Multiple sequence alignment - TraesCS3D01G467200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G467200 chr3D 100.000 3287 0 0 1 3287 570279243 570275957 0.000000e+00 6071.0
1 TraesCS3D01G467200 chr3D 83.768 1380 183 23 922 2287 570270923 570272275 0.000000e+00 1269.0
2 TraesCS3D01G467200 chr3D 80.245 734 122 16 1018 1738 569976371 569977094 6.250000e-147 531.0
3 TraesCS3D01G467200 chr3D 96.774 93 2 1 3195 3286 614159938 614160030 1.580000e-33 154.0
4 TraesCS3D01G467200 chr3D 75.641 234 30 14 600 827 570270699 570270911 1.260000e-14 91.6
5 TraesCS3D01G467200 chr3D 80.870 115 16 5 1079 1189 551427571 551427459 5.840000e-13 86.1
6 TraesCS3D01G467200 chr3A 88.619 2425 176 41 564 2949 703099885 703097522 0.000000e+00 2857.0
7 TraesCS3D01G467200 chr3A 86.234 1758 189 26 554 2286 703135279 703133550 0.000000e+00 1857.0
8 TraesCS3D01G467200 chr3A 88.728 621 66 2 922 1542 703006523 703007139 0.000000e+00 756.0
9 TraesCS3D01G467200 chr3A 80.583 721 112 16 1041 1738 702570419 702571134 6.250000e-147 531.0
10 TraesCS3D01G467200 chr3A 92.553 188 14 0 2944 3131 703097280 703097093 1.500000e-68 270.0
11 TraesCS3D01G467200 chr3A 91.270 126 11 0 435 560 703168825 703168700 4.360000e-39 172.0
12 TraesCS3D01G467200 chr3A 86.301 73 8 2 755 827 703006441 703006511 9.780000e-11 78.7
13 TraesCS3D01G467200 chr3B 87.733 1606 160 25 697 2286 757457628 757456044 0.000000e+00 1840.0
14 TraesCS3D01G467200 chr3B 88.392 1499 108 30 564 2042 757286972 757285520 0.000000e+00 1744.0
15 TraesCS3D01G467200 chr3B 87.129 808 64 15 2030 2819 757284790 757284005 0.000000e+00 880.0
16 TraesCS3D01G467200 chr3B 75.636 1219 228 43 1018 2212 756667179 756668352 2.890000e-150 542.0
17 TraesCS3D01G467200 chr3B 95.122 205 8 2 2993 3195 757284002 757283798 4.090000e-84 322.0
18 TraesCS3D01G467200 chr3B 82.880 368 39 16 7 358 757469910 757469551 3.190000e-80 309.0
19 TraesCS3D01G467200 chr7D 94.231 104 5 1 3184 3286 318031920 318031817 1.220000e-34 158.0
20 TraesCS3D01G467200 chr7D 96.774 93 2 1 3195 3286 452911776 452911684 1.580000e-33 154.0
21 TraesCS3D01G467200 chr7D 96.703 91 2 1 3197 3286 208599181 208599091 2.040000e-32 150.0
22 TraesCS3D01G467200 chr4D 96.774 93 2 1 3195 3286 142166513 142166605 1.580000e-33 154.0
23 TraesCS3D01G467200 chr4D 96.774 93 2 1 3195 3286 146229729 146229637 1.580000e-33 154.0
24 TraesCS3D01G467200 chr4D 95.699 93 3 1 3195 3286 139250524 139250432 7.350000e-32 148.0
25 TraesCS3D01G467200 chr2D 96.774 93 2 1 3195 3286 519025431 519025523 1.580000e-33 154.0
26 TraesCS3D01G467200 chr2D 82.857 105 7 3 463 561 620478519 620478618 2.100000e-12 84.2
27 TraesCS3D01G467200 chr1D 95.699 93 3 1 3195 3286 157680922 157681014 7.350000e-32 148.0
28 TraesCS3D01G467200 chr6B 88.785 107 12 0 435 541 66670491 66670385 7.400000e-27 132.0
29 TraesCS3D01G467200 chr7A 79.333 150 28 1 1502 1648 714867599 714867450 5.800000e-18 102.0
30 TraesCS3D01G467200 chr1B 92.308 39 2 1 2406 2444 279900465 279900428 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G467200 chr3D 570275957 570279243 3286 True 6071.00 6071 100.000000 1 3287 1 chr3D.!!$R2 3286
1 TraesCS3D01G467200 chr3D 570270699 570272275 1576 False 680.30 1269 79.704500 600 2287 2 chr3D.!!$F3 1687
2 TraesCS3D01G467200 chr3D 569976371 569977094 723 False 531.00 531 80.245000 1018 1738 1 chr3D.!!$F1 720
3 TraesCS3D01G467200 chr3A 703133550 703135279 1729 True 1857.00 1857 86.234000 554 2286 1 chr3A.!!$R1 1732
4 TraesCS3D01G467200 chr3A 703097093 703099885 2792 True 1563.50 2857 90.586000 564 3131 2 chr3A.!!$R3 2567
5 TraesCS3D01G467200 chr3A 702570419 702571134 715 False 531.00 531 80.583000 1041 1738 1 chr3A.!!$F1 697
6 TraesCS3D01G467200 chr3A 703006441 703007139 698 False 417.35 756 87.514500 755 1542 2 chr3A.!!$F2 787
7 TraesCS3D01G467200 chr3B 757456044 757457628 1584 True 1840.00 1840 87.733000 697 2286 1 chr3B.!!$R1 1589
8 TraesCS3D01G467200 chr3B 757283798 757286972 3174 True 982.00 1744 90.214333 564 3195 3 chr3B.!!$R3 2631
9 TraesCS3D01G467200 chr3B 756667179 756668352 1173 False 542.00 542 75.636000 1018 2212 1 chr3B.!!$F1 1194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.033504 GCCGCCTATCATCCGAAGAA 59.966 55.000 0.00 0.0 0.00 2.52 F
525 526 0.035458 ACTCCGCTCCAAAGGACTTG 59.965 55.000 0.00 0.0 32.33 3.16 F
941 972 0.311477 TCTGCGCGCGGTATATAACA 59.689 50.000 36.58 16.8 0.00 2.41 F
971 1005 1.080093 GCACCTCGATCGACCACAA 60.080 57.895 15.15 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1011 1056 1.799548 GCGACGAGGATGAGGTCTTTC 60.800 57.143 0.00 0.0 0.00 2.62 R
2187 3051 1.116308 TCTCCTCGTTGAACACCACA 58.884 50.000 0.00 0.0 0.00 4.17 R
2244 3111 1.303155 GTTGCTGCAGAAGAGCCCT 60.303 57.895 20.43 0.0 35.43 5.19 R
2961 4103 0.597637 GGCCACATCTCGGTATCACG 60.598 60.000 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.479352 AACATGATGAGGTCTCTATGGATAG 57.521 40.000 0.00 0.00 0.00 2.08
25 26 6.798766 ACATGATGAGGTCTCTATGGATAGA 58.201 40.000 0.00 0.00 37.76 1.98
26 27 7.420856 ACATGATGAGGTCTCTATGGATAGAT 58.579 38.462 0.00 0.00 38.60 1.98
27 28 8.564370 ACATGATGAGGTCTCTATGGATAGATA 58.436 37.037 0.00 0.00 38.60 1.98
28 29 9.590828 CATGATGAGGTCTCTATGGATAGATAT 57.409 37.037 0.00 0.00 38.60 1.63
29 30 8.993404 TGATGAGGTCTCTATGGATAGATATG 57.007 38.462 0.00 0.00 38.60 1.78
30 31 8.003629 TGATGAGGTCTCTATGGATAGATATGG 58.996 40.741 0.00 0.00 38.60 2.74
31 32 7.530995 TGAGGTCTCTATGGATAGATATGGA 57.469 40.000 0.00 0.00 38.60 3.41
32 33 8.123843 TGAGGTCTCTATGGATAGATATGGAT 57.876 38.462 0.00 0.00 38.60 3.41
33 34 8.224025 TGAGGTCTCTATGGATAGATATGGATC 58.776 40.741 0.00 0.00 38.60 3.36
34 35 8.362051 AGGTCTCTATGGATAGATATGGATCT 57.638 38.462 0.00 0.00 44.90 2.75
35 36 8.226810 AGGTCTCTATGGATAGATATGGATCTG 58.773 40.741 0.00 0.00 42.66 2.90
36 37 7.039784 GGTCTCTATGGATAGATATGGATCTGC 60.040 44.444 0.00 0.00 42.66 4.26
37 38 7.505248 GTCTCTATGGATAGATATGGATCTGCA 59.495 40.741 0.00 0.00 42.66 4.41
38 39 8.233116 TCTCTATGGATAGATATGGATCTGCAT 58.767 37.037 0.00 0.00 42.66 3.96
39 40 8.191534 TCTATGGATAGATATGGATCTGCATG 57.808 38.462 0.00 0.00 42.66 4.06
40 41 5.625568 TGGATAGATATGGATCTGCATGG 57.374 43.478 0.00 0.00 42.66 3.66
41 42 4.141551 TGGATAGATATGGATCTGCATGGC 60.142 45.833 0.00 0.00 42.66 4.40
42 43 4.141551 GGATAGATATGGATCTGCATGGCA 60.142 45.833 0.00 0.00 42.66 4.92
43 44 3.069079 AGATATGGATCTGCATGGCAC 57.931 47.619 0.00 0.00 41.12 5.01
44 45 1.736126 GATATGGATCTGCATGGCACG 59.264 52.381 0.00 0.00 33.79 5.34
45 46 0.886043 TATGGATCTGCATGGCACGC 60.886 55.000 0.00 0.00 33.79 5.34
46 47 2.515523 GGATCTGCATGGCACGCT 60.516 61.111 7.21 0.00 33.79 5.07
47 48 1.227645 GGATCTGCATGGCACGCTA 60.228 57.895 7.21 0.00 33.79 4.26
48 49 1.226686 GGATCTGCATGGCACGCTAG 61.227 60.000 7.21 2.84 33.79 3.42
49 50 1.226686 GATCTGCATGGCACGCTAGG 61.227 60.000 7.21 0.00 33.79 3.02
50 51 1.976132 ATCTGCATGGCACGCTAGGT 61.976 55.000 7.21 0.00 33.79 3.08
51 52 1.746615 CTGCATGGCACGCTAGGTT 60.747 57.895 7.21 0.00 33.79 3.50
52 53 0.461870 CTGCATGGCACGCTAGGTTA 60.462 55.000 7.21 0.00 33.79 2.85
53 54 0.461870 TGCATGGCACGCTAGGTTAG 60.462 55.000 7.21 0.00 31.71 2.34
62 63 3.816580 GCTAGGTTAGCCGCCTATC 57.183 57.895 0.00 0.00 45.95 2.08
63 64 0.966920 GCTAGGTTAGCCGCCTATCA 59.033 55.000 0.00 0.00 45.95 2.15
64 65 1.550976 GCTAGGTTAGCCGCCTATCAT 59.449 52.381 0.00 0.00 45.95 2.45
65 66 2.417515 GCTAGGTTAGCCGCCTATCATC 60.418 54.545 0.00 0.00 45.95 2.92
66 67 0.977395 AGGTTAGCCGCCTATCATCC 59.023 55.000 0.00 0.00 40.50 3.51
67 68 0.389948 GGTTAGCCGCCTATCATCCG 60.390 60.000 0.00 0.00 0.00 4.18
68 69 0.601558 GTTAGCCGCCTATCATCCGA 59.398 55.000 0.00 0.00 0.00 4.55
69 70 1.000506 GTTAGCCGCCTATCATCCGAA 59.999 52.381 0.00 0.00 0.00 4.30
70 71 0.888619 TAGCCGCCTATCATCCGAAG 59.111 55.000 0.00 0.00 0.00 3.79
71 72 0.827925 AGCCGCCTATCATCCGAAGA 60.828 55.000 0.00 0.00 0.00 2.87
72 73 0.033504 GCCGCCTATCATCCGAAGAA 59.966 55.000 0.00 0.00 0.00 2.52
73 74 1.540363 GCCGCCTATCATCCGAAGAAA 60.540 52.381 0.00 0.00 0.00 2.52
74 75 2.833794 CCGCCTATCATCCGAAGAAAA 58.166 47.619 0.00 0.00 0.00 2.29
75 76 2.802816 CCGCCTATCATCCGAAGAAAAG 59.197 50.000 0.00 0.00 0.00 2.27
76 77 3.458189 CGCCTATCATCCGAAGAAAAGT 58.542 45.455 0.00 0.00 0.00 2.66
77 78 4.500887 CCGCCTATCATCCGAAGAAAAGTA 60.501 45.833 0.00 0.00 0.00 2.24
78 79 4.681942 CGCCTATCATCCGAAGAAAAGTAG 59.318 45.833 0.00 0.00 0.00 2.57
79 80 5.507482 CGCCTATCATCCGAAGAAAAGTAGA 60.507 44.000 0.00 0.00 0.00 2.59
80 81 6.459923 GCCTATCATCCGAAGAAAAGTAGAT 58.540 40.000 0.00 0.00 0.00 1.98
81 82 7.575155 CGCCTATCATCCGAAGAAAAGTAGATA 60.575 40.741 0.00 0.00 0.00 1.98
82 83 7.542824 GCCTATCATCCGAAGAAAAGTAGATAC 59.457 40.741 0.00 0.00 0.00 2.24
83 84 8.577296 CCTATCATCCGAAGAAAAGTAGATACA 58.423 37.037 0.00 0.00 0.00 2.29
84 85 9.967346 CTATCATCCGAAGAAAAGTAGATACAA 57.033 33.333 0.00 0.00 0.00 2.41
86 87 9.838339 ATCATCCGAAGAAAAGTAGATACAAAT 57.162 29.630 0.00 0.00 0.00 2.32
154 155 9.715123 TTATACGAAAAATGTAAGATGTGCATG 57.285 29.630 0.00 0.00 32.17 4.06
155 156 6.252967 ACGAAAAATGTAAGATGTGCATGA 57.747 33.333 0.00 0.00 32.17 3.07
156 157 6.676950 ACGAAAAATGTAAGATGTGCATGAA 58.323 32.000 0.00 0.00 32.17 2.57
157 158 7.144661 ACGAAAAATGTAAGATGTGCATGAAA 58.855 30.769 0.00 0.00 32.17 2.69
158 159 7.651304 ACGAAAAATGTAAGATGTGCATGAAAA 59.349 29.630 0.00 0.00 32.17 2.29
159 160 8.486383 CGAAAAATGTAAGATGTGCATGAAAAA 58.514 29.630 0.00 0.00 32.17 1.94
213 214 9.883142 AAAGAAACACAGAAAATCAATACCAAA 57.117 25.926 0.00 0.00 0.00 3.28
214 215 9.883142 AAGAAACACAGAAAATCAATACCAAAA 57.117 25.926 0.00 0.00 0.00 2.44
222 223 9.956797 CAGAAAATCAATACCAAAATAAAAGCG 57.043 29.630 0.00 0.00 0.00 4.68
223 224 8.655970 AGAAAATCAATACCAAAATAAAAGCGC 58.344 29.630 0.00 0.00 0.00 5.92
224 225 8.546597 AAAATCAATACCAAAATAAAAGCGCT 57.453 26.923 2.64 2.64 0.00 5.92
225 226 7.524294 AATCAATACCAAAATAAAAGCGCTG 57.476 32.000 12.58 0.00 0.00 5.18
226 227 6.260870 TCAATACCAAAATAAAAGCGCTGA 57.739 33.333 12.58 0.00 0.00 4.26
227 228 6.682746 TCAATACCAAAATAAAAGCGCTGAA 58.317 32.000 12.58 0.00 0.00 3.02
228 229 7.148641 TCAATACCAAAATAAAAGCGCTGAAA 58.851 30.769 12.58 0.00 0.00 2.69
229 230 7.653713 TCAATACCAAAATAAAAGCGCTGAAAA 59.346 29.630 12.58 0.00 0.00 2.29
230 231 5.651172 ACCAAAATAAAAGCGCTGAAAAC 57.349 34.783 12.58 0.00 0.00 2.43
231 232 5.112686 ACCAAAATAAAAGCGCTGAAAACA 58.887 33.333 12.58 0.00 0.00 2.83
232 233 5.234116 ACCAAAATAAAAGCGCTGAAAACAG 59.766 36.000 12.58 0.00 0.00 3.16
233 234 5.461737 CCAAAATAAAAGCGCTGAAAACAGA 59.538 36.000 12.58 0.00 0.00 3.41
234 235 6.347110 CAAAATAAAAGCGCTGAAAACAGAC 58.653 36.000 12.58 0.00 0.00 3.51
235 236 2.492019 AAAAGCGCTGAAAACAGACC 57.508 45.000 12.58 0.00 0.00 3.85
236 237 1.680338 AAAGCGCTGAAAACAGACCT 58.320 45.000 12.58 0.00 0.00 3.85
237 238 2.543777 AAGCGCTGAAAACAGACCTA 57.456 45.000 12.58 0.00 0.00 3.08
238 239 2.086054 AGCGCTGAAAACAGACCTAG 57.914 50.000 10.39 0.00 0.00 3.02
239 240 1.618837 AGCGCTGAAAACAGACCTAGA 59.381 47.619 10.39 0.00 0.00 2.43
240 241 2.037251 AGCGCTGAAAACAGACCTAGAA 59.963 45.455 10.39 0.00 0.00 2.10
241 242 2.806244 GCGCTGAAAACAGACCTAGAAA 59.194 45.455 0.00 0.00 0.00 2.52
242 243 3.120511 GCGCTGAAAACAGACCTAGAAAG 60.121 47.826 0.00 0.00 0.00 2.62
243 244 4.058817 CGCTGAAAACAGACCTAGAAAGT 58.941 43.478 0.00 0.00 0.00 2.66
244 245 5.227908 CGCTGAAAACAGACCTAGAAAGTA 58.772 41.667 0.00 0.00 0.00 2.24
245 246 5.346281 CGCTGAAAACAGACCTAGAAAGTAG 59.654 44.000 0.00 0.00 0.00 2.57
246 247 6.224584 GCTGAAAACAGACCTAGAAAGTAGT 58.775 40.000 0.00 0.00 0.00 2.73
247 248 6.146347 GCTGAAAACAGACCTAGAAAGTAGTG 59.854 42.308 0.00 0.00 0.00 2.74
248 249 7.356089 TGAAAACAGACCTAGAAAGTAGTGA 57.644 36.000 0.00 0.00 0.00 3.41
249 250 7.788026 TGAAAACAGACCTAGAAAGTAGTGAA 58.212 34.615 0.00 0.00 0.00 3.18
250 251 8.262227 TGAAAACAGACCTAGAAAGTAGTGAAA 58.738 33.333 0.00 0.00 0.00 2.69
251 252 8.664211 AAAACAGACCTAGAAAGTAGTGAAAG 57.336 34.615 0.00 0.00 0.00 2.62
252 253 6.980416 ACAGACCTAGAAAGTAGTGAAAGT 57.020 37.500 0.00 0.00 0.00 2.66
253 254 6.983984 ACAGACCTAGAAAGTAGTGAAAGTC 58.016 40.000 0.00 0.00 0.00 3.01
254 255 6.015265 ACAGACCTAGAAAGTAGTGAAAGTCC 60.015 42.308 0.00 0.00 0.00 3.85
255 256 5.183522 AGACCTAGAAAGTAGTGAAAGTCCG 59.816 44.000 0.00 0.00 0.00 4.79
256 257 4.174762 CCTAGAAAGTAGTGAAAGTCCGC 58.825 47.826 0.00 0.00 0.00 5.54
257 258 3.746045 AGAAAGTAGTGAAAGTCCGCA 57.254 42.857 0.00 0.00 0.00 5.69
258 259 4.273148 AGAAAGTAGTGAAAGTCCGCAT 57.727 40.909 0.00 0.00 0.00 4.73
259 260 5.401531 AGAAAGTAGTGAAAGTCCGCATA 57.598 39.130 0.00 0.00 0.00 3.14
260 261 5.411781 AGAAAGTAGTGAAAGTCCGCATAG 58.588 41.667 0.00 0.00 0.00 2.23
261 262 5.185249 AGAAAGTAGTGAAAGTCCGCATAGA 59.815 40.000 0.00 0.00 0.00 1.98
262 263 5.401531 AAGTAGTGAAAGTCCGCATAGAA 57.598 39.130 0.00 0.00 0.00 2.10
263 264 5.401531 AGTAGTGAAAGTCCGCATAGAAA 57.598 39.130 0.00 0.00 0.00 2.52
264 265 5.790593 AGTAGTGAAAGTCCGCATAGAAAA 58.209 37.500 0.00 0.00 0.00 2.29
265 266 5.638234 AGTAGTGAAAGTCCGCATAGAAAAC 59.362 40.000 0.00 0.00 0.00 2.43
266 267 3.751698 AGTGAAAGTCCGCATAGAAAACC 59.248 43.478 0.00 0.00 0.00 3.27
267 268 3.500680 GTGAAAGTCCGCATAGAAAACCA 59.499 43.478 0.00 0.00 0.00 3.67
268 269 4.023536 GTGAAAGTCCGCATAGAAAACCAA 60.024 41.667 0.00 0.00 0.00 3.67
269 270 4.580995 TGAAAGTCCGCATAGAAAACCAAA 59.419 37.500 0.00 0.00 0.00 3.28
270 271 4.499037 AAGTCCGCATAGAAAACCAAAC 57.501 40.909 0.00 0.00 0.00 2.93
271 272 3.482436 AGTCCGCATAGAAAACCAAACA 58.518 40.909 0.00 0.00 0.00 2.83
272 273 3.252458 AGTCCGCATAGAAAACCAAACAC 59.748 43.478 0.00 0.00 0.00 3.32
273 274 3.003897 GTCCGCATAGAAAACCAAACACA 59.996 43.478 0.00 0.00 0.00 3.72
274 275 3.632604 TCCGCATAGAAAACCAAACACAA 59.367 39.130 0.00 0.00 0.00 3.33
275 276 4.098044 TCCGCATAGAAAACCAAACACAAA 59.902 37.500 0.00 0.00 0.00 2.83
276 277 4.444056 CCGCATAGAAAACCAAACACAAAG 59.556 41.667 0.00 0.00 0.00 2.77
277 278 5.277825 CGCATAGAAAACCAAACACAAAGA 58.722 37.500 0.00 0.00 0.00 2.52
278 279 5.746245 CGCATAGAAAACCAAACACAAAGAA 59.254 36.000 0.00 0.00 0.00 2.52
279 280 6.254589 CGCATAGAAAACCAAACACAAAGAAA 59.745 34.615 0.00 0.00 0.00 2.52
280 281 7.201478 CGCATAGAAAACCAAACACAAAGAAAA 60.201 33.333 0.00 0.00 0.00 2.29
281 282 7.902917 GCATAGAAAACCAAACACAAAGAAAAC 59.097 33.333 0.00 0.00 0.00 2.43
282 283 8.930760 CATAGAAAACCAAACACAAAGAAAACA 58.069 29.630 0.00 0.00 0.00 2.83
283 284 7.184800 AGAAAACCAAACACAAAGAAAACAC 57.815 32.000 0.00 0.00 0.00 3.32
284 285 6.763610 AGAAAACCAAACACAAAGAAAACACA 59.236 30.769 0.00 0.00 0.00 3.72
285 286 5.915812 AACCAAACACAAAGAAAACACAC 57.084 34.783 0.00 0.00 0.00 3.82
286 287 4.950050 ACCAAACACAAAGAAAACACACA 58.050 34.783 0.00 0.00 0.00 3.72
287 288 5.360591 ACCAAACACAAAGAAAACACACAA 58.639 33.333 0.00 0.00 0.00 3.33
288 289 5.817816 ACCAAACACAAAGAAAACACACAAA 59.182 32.000 0.00 0.00 0.00 2.83
289 290 6.316390 ACCAAACACAAAGAAAACACACAAAA 59.684 30.769 0.00 0.00 0.00 2.44
290 291 7.148239 ACCAAACACAAAGAAAACACACAAAAA 60.148 29.630 0.00 0.00 0.00 1.94
291 292 7.375544 CCAAACACAAAGAAAACACACAAAAAG 59.624 33.333 0.00 0.00 0.00 2.27
292 293 7.778470 AACACAAAGAAAACACACAAAAAGA 57.222 28.000 0.00 0.00 0.00 2.52
293 294 7.778470 ACACAAAGAAAACACACAAAAAGAA 57.222 28.000 0.00 0.00 0.00 2.52
294 295 8.376889 ACACAAAGAAAACACACAAAAAGAAT 57.623 26.923 0.00 0.00 0.00 2.40
295 296 9.482627 ACACAAAGAAAACACACAAAAAGAATA 57.517 25.926 0.00 0.00 0.00 1.75
301 302 9.936759 AGAAAACACACAAAAAGAATAAAAGGA 57.063 25.926 0.00 0.00 0.00 3.36
321 322 9.944663 AAAAGGAAAAAGAAAAACACAAGAAAC 57.055 25.926 0.00 0.00 0.00 2.78
322 323 7.667043 AGGAAAAAGAAAAACACAAGAAACC 57.333 32.000 0.00 0.00 0.00 3.27
323 324 7.220740 AGGAAAAAGAAAAACACAAGAAACCA 58.779 30.769 0.00 0.00 0.00 3.67
324 325 7.172532 AGGAAAAAGAAAAACACAAGAAACCAC 59.827 33.333 0.00 0.00 0.00 4.16
325 326 7.041712 GGAAAAAGAAAAACACAAGAAACCACA 60.042 33.333 0.00 0.00 0.00 4.17
326 327 7.793927 AAAAGAAAAACACAAGAAACCACAA 57.206 28.000 0.00 0.00 0.00 3.33
327 328 7.793927 AAAGAAAAACACAAGAAACCACAAA 57.206 28.000 0.00 0.00 0.00 2.83
328 329 7.793927 AAGAAAAACACAAGAAACCACAAAA 57.206 28.000 0.00 0.00 0.00 2.44
329 330 7.793927 AGAAAAACACAAGAAACCACAAAAA 57.206 28.000 0.00 0.00 0.00 1.94
383 384 7.881775 AAACACTGGAAGATTCTAAAACTGT 57.118 32.000 0.00 0.00 37.43 3.55
384 385 7.881775 AACACTGGAAGATTCTAAAACTGTT 57.118 32.000 0.00 0.00 37.43 3.16
385 386 7.881775 ACACTGGAAGATTCTAAAACTGTTT 57.118 32.000 0.00 0.00 37.43 2.83
386 387 8.293699 ACACTGGAAGATTCTAAAACTGTTTT 57.706 30.769 20.87 20.87 37.43 2.43
387 388 9.403583 ACACTGGAAGATTCTAAAACTGTTTTA 57.596 29.630 20.87 20.87 37.43 1.52
392 393 9.561270 GGAAGATTCTAAAACTGTTTTATCTGC 57.439 33.333 22.00 20.12 34.84 4.26
393 394 9.561270 GAAGATTCTAAAACTGTTTTATCTGCC 57.439 33.333 22.00 15.20 34.84 4.85
394 395 8.635765 AGATTCTAAAACTGTTTTATCTGCCA 57.364 30.769 22.00 4.60 34.84 4.92
395 396 9.247861 AGATTCTAAAACTGTTTTATCTGCCAT 57.752 29.630 22.00 10.53 34.84 4.40
396 397 9.508567 GATTCTAAAACTGTTTTATCTGCCATC 57.491 33.333 22.00 14.05 34.84 3.51
397 398 7.391148 TCTAAAACTGTTTTATCTGCCATCC 57.609 36.000 22.00 0.00 34.84 3.51
398 399 7.175104 TCTAAAACTGTTTTATCTGCCATCCT 58.825 34.615 22.00 0.00 34.84 3.24
399 400 8.325787 TCTAAAACTGTTTTATCTGCCATCCTA 58.674 33.333 22.00 2.10 34.84 2.94
400 401 7.396540 AAAACTGTTTTATCTGCCATCCTAG 57.603 36.000 16.35 0.00 0.00 3.02
401 402 5.700402 ACTGTTTTATCTGCCATCCTAGT 57.300 39.130 0.00 0.00 0.00 2.57
402 403 6.808321 ACTGTTTTATCTGCCATCCTAGTA 57.192 37.500 0.00 0.00 0.00 1.82
403 404 7.195374 ACTGTTTTATCTGCCATCCTAGTAA 57.805 36.000 0.00 0.00 0.00 2.24
404 405 7.630082 ACTGTTTTATCTGCCATCCTAGTAAA 58.370 34.615 0.00 0.00 0.00 2.01
405 406 8.107095 ACTGTTTTATCTGCCATCCTAGTAAAA 58.893 33.333 0.00 0.00 0.00 1.52
406 407 8.506168 TGTTTTATCTGCCATCCTAGTAAAAG 57.494 34.615 0.00 0.00 0.00 2.27
407 408 8.325787 TGTTTTATCTGCCATCCTAGTAAAAGA 58.674 33.333 0.00 0.00 0.00 2.52
408 409 9.174166 GTTTTATCTGCCATCCTAGTAAAAGAA 57.826 33.333 0.00 0.00 0.00 2.52
409 410 8.732746 TTTATCTGCCATCCTAGTAAAAGAAC 57.267 34.615 0.00 0.00 0.00 3.01
410 411 5.755409 TCTGCCATCCTAGTAAAAGAACA 57.245 39.130 0.00 0.00 0.00 3.18
411 412 6.121776 TCTGCCATCCTAGTAAAAGAACAA 57.878 37.500 0.00 0.00 0.00 2.83
412 413 6.173339 TCTGCCATCCTAGTAAAAGAACAAG 58.827 40.000 0.00 0.00 0.00 3.16
413 414 4.700213 TGCCATCCTAGTAAAAGAACAAGC 59.300 41.667 0.00 0.00 0.00 4.01
414 415 4.096532 GCCATCCTAGTAAAAGAACAAGCC 59.903 45.833 0.00 0.00 0.00 4.35
415 416 4.640647 CCATCCTAGTAAAAGAACAAGCCC 59.359 45.833 0.00 0.00 0.00 5.19
416 417 5.501156 CATCCTAGTAAAAGAACAAGCCCT 58.499 41.667 0.00 0.00 0.00 5.19
417 418 5.161943 TCCTAGTAAAAGAACAAGCCCTC 57.838 43.478 0.00 0.00 0.00 4.30
418 419 4.844655 TCCTAGTAAAAGAACAAGCCCTCT 59.155 41.667 0.00 0.00 0.00 3.69
419 420 6.021030 TCCTAGTAAAAGAACAAGCCCTCTA 58.979 40.000 0.00 0.00 0.00 2.43
420 421 6.672657 TCCTAGTAAAAGAACAAGCCCTCTAT 59.327 38.462 0.00 0.00 0.00 1.98
421 422 7.842743 TCCTAGTAAAAGAACAAGCCCTCTATA 59.157 37.037 0.00 0.00 0.00 1.31
422 423 8.652290 CCTAGTAAAAGAACAAGCCCTCTATAT 58.348 37.037 0.00 0.00 0.00 0.86
423 424 9.699703 CTAGTAAAAGAACAAGCCCTCTATATC 57.300 37.037 0.00 0.00 0.00 1.63
424 425 8.090788 AGTAAAAGAACAAGCCCTCTATATCA 57.909 34.615 0.00 0.00 0.00 2.15
425 426 8.548877 AGTAAAAGAACAAGCCCTCTATATCAA 58.451 33.333 0.00 0.00 0.00 2.57
426 427 9.174166 GTAAAAGAACAAGCCCTCTATATCAAA 57.826 33.333 0.00 0.00 0.00 2.69
427 428 7.631717 AAAGAACAAGCCCTCTATATCAAAC 57.368 36.000 0.00 0.00 0.00 2.93
428 429 5.360591 AGAACAAGCCCTCTATATCAAACG 58.639 41.667 0.00 0.00 0.00 3.60
429 430 5.128827 AGAACAAGCCCTCTATATCAAACGA 59.871 40.000 0.00 0.00 0.00 3.85
430 431 4.950050 ACAAGCCCTCTATATCAAACGAG 58.050 43.478 0.00 0.00 0.00 4.18
431 432 4.202264 ACAAGCCCTCTATATCAAACGAGG 60.202 45.833 0.00 0.00 42.09 4.63
432 433 2.300437 AGCCCTCTATATCAAACGAGGC 59.700 50.000 0.00 0.00 41.31 4.70
433 434 2.613223 GCCCTCTATATCAAACGAGGCC 60.613 54.545 0.00 0.00 41.31 5.19
434 435 2.900546 CCCTCTATATCAAACGAGGCCT 59.099 50.000 3.86 3.86 41.31 5.19
435 436 3.325135 CCCTCTATATCAAACGAGGCCTT 59.675 47.826 6.77 0.00 41.31 4.35
436 437 4.527038 CCCTCTATATCAAACGAGGCCTTA 59.473 45.833 6.77 0.00 41.31 2.69
437 438 5.336849 CCCTCTATATCAAACGAGGCCTTAG 60.337 48.000 6.77 7.25 41.31 2.18
438 439 5.336849 CCTCTATATCAAACGAGGCCTTAGG 60.337 48.000 6.77 1.63 36.91 2.69
439 440 3.771577 ATATCAAACGAGGCCTTAGGG 57.228 47.619 6.77 0.00 0.00 3.53
440 441 1.580059 ATCAAACGAGGCCTTAGGGA 58.420 50.000 6.77 1.68 33.58 4.20
441 442 0.902531 TCAAACGAGGCCTTAGGGAG 59.097 55.000 6.77 0.00 33.58 4.30
442 443 0.613777 CAAACGAGGCCTTAGGGAGT 59.386 55.000 6.77 0.00 33.58 3.85
443 444 1.003233 CAAACGAGGCCTTAGGGAGTT 59.997 52.381 6.77 4.31 33.58 3.01
444 445 0.903236 AACGAGGCCTTAGGGAGTTC 59.097 55.000 6.77 0.00 33.58 3.01
445 446 0.252103 ACGAGGCCTTAGGGAGTTCA 60.252 55.000 6.77 0.00 33.58 3.18
446 447 0.902531 CGAGGCCTTAGGGAGTTCAA 59.097 55.000 6.77 0.00 33.58 2.69
447 448 1.486726 CGAGGCCTTAGGGAGTTCAAT 59.513 52.381 6.77 0.00 33.58 2.57
448 449 2.483889 CGAGGCCTTAGGGAGTTCAATC 60.484 54.545 6.77 0.00 33.58 2.67
449 450 2.505819 GAGGCCTTAGGGAGTTCAATCA 59.494 50.000 6.77 0.00 33.58 2.57
450 451 3.126453 AGGCCTTAGGGAGTTCAATCAT 58.874 45.455 0.00 0.00 33.58 2.45
451 452 3.117738 AGGCCTTAGGGAGTTCAATCATG 60.118 47.826 0.00 0.00 33.58 3.07
452 453 3.372025 GGCCTTAGGGAGTTCAATCATGT 60.372 47.826 0.00 0.00 33.58 3.21
453 454 4.141482 GGCCTTAGGGAGTTCAATCATGTA 60.141 45.833 0.00 0.00 33.58 2.29
454 455 5.059833 GCCTTAGGGAGTTCAATCATGTAG 58.940 45.833 0.00 0.00 33.58 2.74
455 456 5.059833 CCTTAGGGAGTTCAATCATGTAGC 58.940 45.833 0.00 0.00 33.58 3.58
456 457 3.185246 AGGGAGTTCAATCATGTAGCG 57.815 47.619 0.00 0.00 0.00 4.26
457 458 1.599542 GGGAGTTCAATCATGTAGCGC 59.400 52.381 0.00 0.00 0.00 5.92
458 459 2.279741 GGAGTTCAATCATGTAGCGCA 58.720 47.619 11.47 0.00 0.00 6.09
459 460 2.874701 GGAGTTCAATCATGTAGCGCAT 59.125 45.455 11.47 0.00 38.60 4.73
468 469 1.391577 ATGTAGCGCATGAATTGGCA 58.608 45.000 11.47 0.00 36.26 4.92
469 470 1.172175 TGTAGCGCATGAATTGGCAA 58.828 45.000 11.47 0.68 0.00 4.52
470 471 1.543358 TGTAGCGCATGAATTGGCAAA 59.457 42.857 11.47 0.00 0.00 3.68
471 472 2.029560 TGTAGCGCATGAATTGGCAAAA 60.030 40.909 11.47 0.00 0.00 2.44
472 473 2.389962 AGCGCATGAATTGGCAAAAT 57.610 40.000 11.47 0.00 0.00 1.82
473 474 2.004017 AGCGCATGAATTGGCAAAATG 58.996 42.857 11.47 10.01 0.00 2.32
474 475 1.062880 GCGCATGAATTGGCAAAATGG 59.937 47.619 3.01 4.90 0.00 3.16
475 476 1.666700 CGCATGAATTGGCAAAATGGG 59.333 47.619 17.30 17.30 0.00 4.00
476 477 1.402613 GCATGAATTGGCAAAATGGGC 59.597 47.619 3.01 2.24 0.00 5.36
477 478 2.942306 GCATGAATTGGCAAAATGGGCT 60.942 45.455 3.01 0.00 0.00 5.19
478 479 3.682155 GCATGAATTGGCAAAATGGGCTA 60.682 43.478 3.01 0.00 0.00 3.93
479 480 3.891422 TGAATTGGCAAAATGGGCTAG 57.109 42.857 3.01 0.00 0.00 3.42
480 481 2.500910 TGAATTGGCAAAATGGGCTAGG 59.499 45.455 3.01 0.00 0.00 3.02
481 482 2.252535 ATTGGCAAAATGGGCTAGGT 57.747 45.000 3.01 0.00 0.00 3.08
482 483 2.022718 TTGGCAAAATGGGCTAGGTT 57.977 45.000 0.00 0.00 0.00 3.50
483 484 2.022718 TGGCAAAATGGGCTAGGTTT 57.977 45.000 0.00 0.00 0.00 3.27
484 485 1.622811 TGGCAAAATGGGCTAGGTTTG 59.377 47.619 5.70 5.70 34.74 2.93
485 486 1.725641 GCAAAATGGGCTAGGTTTGC 58.274 50.000 15.55 15.55 46.21 3.68
486 487 1.675714 GCAAAATGGGCTAGGTTTGCC 60.676 52.381 18.26 0.00 46.41 4.52
491 492 2.275748 GGCTAGGTTTGCCCCTCC 59.724 66.667 0.00 0.00 44.32 4.30
492 493 2.309504 GGCTAGGTTTGCCCCTCCT 61.310 63.158 0.00 0.00 44.32 3.69
493 494 0.986550 GGCTAGGTTTGCCCCTCCTA 60.987 60.000 0.00 0.00 44.32 2.94
495 496 1.880941 CTAGGTTTGCCCCTCCTAGT 58.119 55.000 8.72 0.00 43.20 2.57
496 497 1.763545 CTAGGTTTGCCCCTCCTAGTC 59.236 57.143 8.72 0.00 43.20 2.59
497 498 0.119358 AGGTTTGCCCCTCCTAGTCT 59.881 55.000 0.00 0.00 34.57 3.24
498 499 0.992695 GGTTTGCCCCTCCTAGTCTT 59.007 55.000 0.00 0.00 0.00 3.01
499 500 1.354705 GGTTTGCCCCTCCTAGTCTTT 59.645 52.381 0.00 0.00 0.00 2.52
500 501 2.437413 GTTTGCCCCTCCTAGTCTTTG 58.563 52.381 0.00 0.00 0.00 2.77
501 502 0.991920 TTGCCCCTCCTAGTCTTTGG 59.008 55.000 0.00 0.00 0.00 3.28
502 503 0.914417 TGCCCCTCCTAGTCTTTGGG 60.914 60.000 0.00 0.00 37.68 4.12
503 504 0.914902 GCCCCTCCTAGTCTTTGGGT 60.915 60.000 0.00 0.00 36.26 4.51
504 505 1.624391 GCCCCTCCTAGTCTTTGGGTA 60.624 57.143 0.00 0.00 36.26 3.69
505 506 2.399580 CCCCTCCTAGTCTTTGGGTAG 58.600 57.143 0.00 0.00 36.26 3.18
506 507 2.023307 CCCCTCCTAGTCTTTGGGTAGA 60.023 54.545 0.00 0.00 36.26 2.59
507 508 3.032459 CCCTCCTAGTCTTTGGGTAGAC 58.968 54.545 0.00 0.00 43.90 2.59
512 513 3.437746 GTCTTTGGGTAGACTCCGC 57.562 57.895 0.00 0.00 41.07 5.54
513 514 0.896226 GTCTTTGGGTAGACTCCGCT 59.104 55.000 0.00 0.00 41.07 5.52
514 515 1.135053 GTCTTTGGGTAGACTCCGCTC 60.135 57.143 0.00 0.00 41.07 5.03
515 516 0.175989 CTTTGGGTAGACTCCGCTCC 59.824 60.000 0.00 0.00 0.00 4.70
516 517 0.543410 TTTGGGTAGACTCCGCTCCA 60.543 55.000 0.00 0.00 0.00 3.86
517 518 0.543410 TTGGGTAGACTCCGCTCCAA 60.543 55.000 0.00 0.00 32.60 3.53
518 519 0.543410 TGGGTAGACTCCGCTCCAAA 60.543 55.000 0.00 0.00 0.00 3.28
519 520 0.175989 GGGTAGACTCCGCTCCAAAG 59.824 60.000 0.00 0.00 0.00 2.77
520 521 0.175989 GGTAGACTCCGCTCCAAAGG 59.824 60.000 0.00 0.00 0.00 3.11
521 522 1.183549 GTAGACTCCGCTCCAAAGGA 58.816 55.000 0.00 0.00 34.93 3.36
522 523 1.135053 GTAGACTCCGCTCCAAAGGAC 60.135 57.143 0.00 0.00 32.33 3.85
523 524 0.543174 AGACTCCGCTCCAAAGGACT 60.543 55.000 0.00 0.00 32.33 3.85
524 525 0.321996 GACTCCGCTCCAAAGGACTT 59.678 55.000 0.00 0.00 32.33 3.01
525 526 0.035458 ACTCCGCTCCAAAGGACTTG 59.965 55.000 0.00 0.00 32.33 3.16
526 527 0.321671 CTCCGCTCCAAAGGACTTGA 59.678 55.000 0.00 0.00 37.17 3.02
527 528 0.984230 TCCGCTCCAAAGGACTTGAT 59.016 50.000 0.00 0.00 37.17 2.57
528 529 1.351017 TCCGCTCCAAAGGACTTGATT 59.649 47.619 0.00 0.00 37.17 2.57
529 530 1.740025 CCGCTCCAAAGGACTTGATTC 59.260 52.381 0.00 0.00 37.17 2.52
530 531 1.740025 CGCTCCAAAGGACTTGATTCC 59.260 52.381 0.00 0.00 37.17 3.01
532 533 3.013219 GCTCCAAAGGACTTGATTCCTC 58.987 50.000 0.00 0.00 46.06 3.71
533 534 3.308046 GCTCCAAAGGACTTGATTCCTCT 60.308 47.826 0.00 0.00 46.06 3.69
534 535 4.080863 GCTCCAAAGGACTTGATTCCTCTA 60.081 45.833 0.00 0.00 46.06 2.43
535 536 5.422214 TCCAAAGGACTTGATTCCTCTAC 57.578 43.478 0.00 0.00 46.06 2.59
536 537 5.094387 TCCAAAGGACTTGATTCCTCTACT 58.906 41.667 0.00 0.00 46.06 2.57
537 538 5.548056 TCCAAAGGACTTGATTCCTCTACTT 59.452 40.000 0.00 0.00 46.06 2.24
538 539 5.645497 CCAAAGGACTTGATTCCTCTACTTG 59.355 44.000 0.00 0.00 46.06 3.16
539 540 6.234177 CAAAGGACTTGATTCCTCTACTTGT 58.766 40.000 0.00 0.00 46.06 3.16
540 541 7.386851 CAAAGGACTTGATTCCTCTACTTGTA 58.613 38.462 0.00 0.00 46.06 2.41
541 542 7.741554 AAGGACTTGATTCCTCTACTTGTAT 57.258 36.000 0.00 0.00 46.06 2.29
542 543 7.118496 AGGACTTGATTCCTCTACTTGTATG 57.882 40.000 0.00 0.00 42.98 2.39
543 544 5.755861 GGACTTGATTCCTCTACTTGTATGC 59.244 44.000 0.00 0.00 32.24 3.14
544 545 5.352284 ACTTGATTCCTCTACTTGTATGCG 58.648 41.667 0.00 0.00 0.00 4.73
545 546 5.105310 ACTTGATTCCTCTACTTGTATGCGT 60.105 40.000 0.00 0.00 0.00 5.24
546 547 4.933330 TGATTCCTCTACTTGTATGCGTC 58.067 43.478 0.00 0.00 0.00 5.19
547 548 4.401202 TGATTCCTCTACTTGTATGCGTCA 59.599 41.667 0.00 0.00 0.00 4.35
548 549 4.794278 TTCCTCTACTTGTATGCGTCAA 57.206 40.909 0.00 0.00 0.00 3.18
549 550 5.339008 TTCCTCTACTTGTATGCGTCAAT 57.661 39.130 0.00 0.00 0.00 2.57
550 551 5.339008 TCCTCTACTTGTATGCGTCAATT 57.661 39.130 0.00 0.00 0.00 2.32
551 552 5.109210 TCCTCTACTTGTATGCGTCAATTG 58.891 41.667 0.00 0.00 0.00 2.32
552 553 4.870426 CCTCTACTTGTATGCGTCAATTGT 59.130 41.667 5.13 0.00 0.00 2.71
559 560 5.816449 TGTATGCGTCAATTGTCATGAAT 57.184 34.783 5.13 0.00 0.00 2.57
560 561 5.809464 TGTATGCGTCAATTGTCATGAATC 58.191 37.500 5.13 0.00 0.00 2.52
562 563 3.080319 TGCGTCAATTGTCATGAATCCA 58.920 40.909 5.13 0.00 0.00 3.41
578 579 6.416631 TGAATCCAAATTCCACATGAAACA 57.583 33.333 0.00 0.00 40.57 2.83
598 600 1.789506 ACGTGCAGAGCTTCTCTTTC 58.210 50.000 0.00 0.00 38.99 2.62
646 657 7.604164 CCAAGCAGAGTTTCTTCTATAGTTTGA 59.396 37.037 0.00 0.00 0.00 2.69
647 658 9.160496 CAAGCAGAGTTTCTTCTATAGTTTGAT 57.840 33.333 0.00 0.00 0.00 2.57
648 659 8.715191 AGCAGAGTTTCTTCTATAGTTTGATG 57.285 34.615 0.00 0.00 0.00 3.07
675 686 9.730705 ATCGATCATTTGACCATAATTATCACT 57.269 29.630 0.00 0.00 0.00 3.41
701 716 1.376466 GGAGTGCCACACCATCAGT 59.624 57.895 6.42 0.00 34.49 3.41
790 805 2.573869 CTCATGGCTCCGTCGTGT 59.426 61.111 0.00 0.00 0.00 4.49
836 855 0.589223 CGCTCATCGGGTCTACTCTC 59.411 60.000 0.00 0.00 33.78 3.20
837 856 1.812324 CGCTCATCGGGTCTACTCTCT 60.812 57.143 0.00 0.00 33.78 3.10
838 857 2.548280 CGCTCATCGGGTCTACTCTCTA 60.548 54.545 0.00 0.00 33.78 2.43
851 876 5.711036 GTCTACTCTCTAACTTCCACTTCCA 59.289 44.000 0.00 0.00 0.00 3.53
941 972 0.311477 TCTGCGCGCGGTATATAACA 59.689 50.000 36.58 16.80 0.00 2.41
947 978 2.981805 CGCGCGGTATATAACAAGCTAA 59.018 45.455 24.84 0.00 32.93 3.09
971 1005 1.080093 GCACCTCGATCGACCACAA 60.080 57.895 15.15 0.00 0.00 3.33
982 1027 1.356624 GACCACAACACAGCACTGC 59.643 57.895 0.00 0.00 0.00 4.40
1011 1056 4.968788 CCAAATTTCAAAATGTGGCAAACG 59.031 37.500 10.92 0.00 44.46 3.60
1741 1841 2.061182 CTACTACGTCTCGGCCAGCC 62.061 65.000 2.24 0.00 0.00 4.85
2004 2125 1.080974 CTACTTCGTGCCGACGGTT 60.081 57.895 16.73 0.00 46.11 4.44
2244 3111 2.268920 GGGCAGATCAACGGCAGA 59.731 61.111 0.00 0.00 41.24 4.26
2292 3159 2.746277 GTGCCCGCCTAGTGGTTG 60.746 66.667 0.00 0.00 35.27 3.77
2295 3162 2.267961 CCCGCCTAGTGGTTGGTC 59.732 66.667 0.00 0.00 35.27 4.02
2305 3172 5.476614 CCTAGTGGTTGGTCTTAGTTACAC 58.523 45.833 0.00 0.00 0.00 2.90
2347 3214 3.311322 TGGTCAAAGTTTGTGATCGTGTC 59.689 43.478 15.08 0.00 0.00 3.67
2360 3227 0.665068 TCGTGTCGTGTGGATTTCGG 60.665 55.000 0.00 0.00 0.00 4.30
2383 3253 7.017645 CGGATTTCCTTGCATCTATTATTTCG 58.982 38.462 0.00 0.00 0.00 3.46
2443 3315 1.430479 ACACGTGTGACGAACAAACA 58.570 45.000 22.71 0.00 46.05 2.83
2458 3330 5.622007 CGAACAAACACCCTGCATCAAATAT 60.622 40.000 0.00 0.00 0.00 1.28
2527 3408 7.966339 AAAAGGAGGTTAACAAAGTAAAGGT 57.034 32.000 8.10 0.00 0.00 3.50
2545 3426 6.862469 AAAGGTGATCATGGTTGAATCATT 57.138 33.333 0.00 0.00 34.96 2.57
2643 3524 0.621571 TCCCAGGGATGGAGTTGGAG 60.622 60.000 3.01 0.00 32.34 3.86
2677 3571 4.677378 CGTGACATGGCGTTAAAAATTTCA 59.323 37.500 0.00 0.00 0.00 2.69
2880 3774 9.358872 GATTCACTTCCTTGATTATTTTTGACC 57.641 33.333 0.00 0.00 0.00 4.02
2942 3839 6.466812 CATCACTAATGTTAGTTGTACGCAC 58.533 40.000 2.77 0.00 41.82 5.34
2960 4102 2.958016 GTATACGGTGGTGGCGCG 60.958 66.667 0.00 0.00 0.00 6.86
2961 4103 4.876828 TATACGGTGGTGGCGCGC 62.877 66.667 25.94 25.94 0.00 6.86
2976 4118 1.299165 GCGCGTGATACCGAGATGT 60.299 57.895 8.43 0.00 0.00 3.06
2980 4122 0.597637 CGTGATACCGAGATGTGGCC 60.598 60.000 0.00 0.00 0.00 5.36
2985 4127 2.275134 TACCGAGATGTGGCCGTATA 57.725 50.000 0.00 0.00 0.00 1.47
3117 4259 3.243941 TGAATCCGAAACCTTGAGAACGA 60.244 43.478 0.00 0.00 0.00 3.85
3131 4273 6.423905 CCTTGAGAACGACTTCATTACTCAAA 59.576 38.462 0.00 0.00 40.58 2.69
3142 4284 6.366332 ACTTCATTACTCAAACGTCATCTCAC 59.634 38.462 0.00 0.00 0.00 3.51
3150 4292 0.036952 ACGTCATCTCACTTGGCCTG 60.037 55.000 3.32 0.00 0.00 4.85
3169 4311 6.127101 GGCCTGGTTCCTTGTTATTACTATT 58.873 40.000 0.00 0.00 0.00 1.73
3197 4339 9.667107 TTATCTTCTTGTCATGTTTAGTTAGGG 57.333 33.333 0.00 0.00 0.00 3.53
3198 4340 5.938125 TCTTCTTGTCATGTTTAGTTAGGGC 59.062 40.000 0.00 0.00 0.00 5.19
3199 4341 5.235850 TCTTGTCATGTTTAGTTAGGGCA 57.764 39.130 0.00 0.00 0.00 5.36
3200 4342 5.815581 TCTTGTCATGTTTAGTTAGGGCAT 58.184 37.500 0.00 0.00 0.00 4.40
3201 4343 5.647658 TCTTGTCATGTTTAGTTAGGGCATG 59.352 40.000 0.00 0.00 38.49 4.06
3202 4344 4.917385 TGTCATGTTTAGTTAGGGCATGT 58.083 39.130 0.00 0.00 38.35 3.21
3203 4345 6.056090 TGTCATGTTTAGTTAGGGCATGTA 57.944 37.500 0.00 0.00 38.35 2.29
3204 4346 5.878116 TGTCATGTTTAGTTAGGGCATGTAC 59.122 40.000 0.00 0.00 38.35 2.90
3205 4347 5.878116 GTCATGTTTAGTTAGGGCATGTACA 59.122 40.000 0.00 0.00 38.35 2.90
3206 4348 6.373216 GTCATGTTTAGTTAGGGCATGTACAA 59.627 38.462 0.00 0.00 38.35 2.41
3207 4349 6.373216 TCATGTTTAGTTAGGGCATGTACAAC 59.627 38.462 0.00 0.00 38.35 3.32
3208 4350 5.622180 TGTTTAGTTAGGGCATGTACAACA 58.378 37.500 0.00 0.00 0.00 3.33
3209 4351 5.703592 TGTTTAGTTAGGGCATGTACAACAG 59.296 40.000 0.00 0.00 0.00 3.16
3210 4352 5.492855 TTAGTTAGGGCATGTACAACAGT 57.507 39.130 0.00 0.00 0.00 3.55
3211 4353 4.367039 AGTTAGGGCATGTACAACAGTT 57.633 40.909 0.00 0.00 0.00 3.16
3212 4354 4.324267 AGTTAGGGCATGTACAACAGTTC 58.676 43.478 0.00 0.00 0.00 3.01
3213 4355 2.949177 AGGGCATGTACAACAGTTCA 57.051 45.000 0.00 0.00 0.00 3.18
3214 4356 2.783135 AGGGCATGTACAACAGTTCAG 58.217 47.619 0.00 0.00 0.00 3.02
3215 4357 2.371841 AGGGCATGTACAACAGTTCAGA 59.628 45.455 0.00 0.00 0.00 3.27
3216 4358 2.484264 GGGCATGTACAACAGTTCAGAC 59.516 50.000 0.00 0.00 0.00 3.51
3217 4359 3.138304 GGCATGTACAACAGTTCAGACA 58.862 45.455 0.00 0.00 0.00 3.41
3218 4360 3.563808 GGCATGTACAACAGTTCAGACAA 59.436 43.478 0.00 0.00 0.00 3.18
3219 4361 4.527564 GCATGTACAACAGTTCAGACAAC 58.472 43.478 0.00 0.00 0.00 3.32
3220 4362 4.554723 GCATGTACAACAGTTCAGACAACC 60.555 45.833 0.00 0.00 0.00 3.77
3221 4363 3.191669 TGTACAACAGTTCAGACAACCG 58.808 45.455 0.00 0.00 0.00 4.44
3222 4364 1.014352 ACAACAGTTCAGACAACCGC 58.986 50.000 0.00 0.00 0.00 5.68
3223 4365 1.299541 CAACAGTTCAGACAACCGCT 58.700 50.000 0.00 0.00 0.00 5.52
3224 4366 1.003545 CAACAGTTCAGACAACCGCTG 60.004 52.381 0.00 0.00 34.71 5.18
3225 4367 0.178068 ACAGTTCAGACAACCGCTGT 59.822 50.000 0.00 0.00 42.61 4.40
3240 4382 8.773404 ACAACCGCTGTCTATAATATTATTCC 57.227 34.615 13.09 3.23 29.87 3.01
3241 4383 8.372459 ACAACCGCTGTCTATAATATTATTCCA 58.628 33.333 13.09 7.12 29.87 3.53
3242 4384 8.656849 CAACCGCTGTCTATAATATTATTCCAC 58.343 37.037 13.09 8.27 0.00 4.02
3243 4385 7.033791 ACCGCTGTCTATAATATTATTCCACG 58.966 38.462 13.09 9.75 0.00 4.94
3244 4386 7.033791 CCGCTGTCTATAATATTATTCCACGT 58.966 38.462 13.09 0.00 0.00 4.49
3245 4387 7.220300 CCGCTGTCTATAATATTATTCCACGTC 59.780 40.741 13.09 3.94 0.00 4.34
3246 4388 7.753580 CGCTGTCTATAATATTATTCCACGTCA 59.246 37.037 13.09 4.05 0.00 4.35
3247 4389 8.861101 GCTGTCTATAATATTATTCCACGTCAC 58.139 37.037 13.09 1.24 0.00 3.67
3260 4402 7.739498 ATTCCACGTCACTTATAACAAAACT 57.261 32.000 0.00 0.00 0.00 2.66
3261 4403 8.836268 ATTCCACGTCACTTATAACAAAACTA 57.164 30.769 0.00 0.00 0.00 2.24
3262 4404 7.642071 TCCACGTCACTTATAACAAAACTAC 57.358 36.000 0.00 0.00 0.00 2.73
3263 4405 7.208777 TCCACGTCACTTATAACAAAACTACA 58.791 34.615 0.00 0.00 0.00 2.74
3264 4406 7.383029 TCCACGTCACTTATAACAAAACTACAG 59.617 37.037 0.00 0.00 0.00 2.74
3265 4407 7.383029 CCACGTCACTTATAACAAAACTACAGA 59.617 37.037 0.00 0.00 0.00 3.41
3266 4408 8.212495 CACGTCACTTATAACAAAACTACAGAC 58.788 37.037 0.00 0.00 0.00 3.51
3267 4409 7.922278 ACGTCACTTATAACAAAACTACAGACA 59.078 33.333 0.00 0.00 0.00 3.41
3268 4410 8.922676 CGTCACTTATAACAAAACTACAGACAT 58.077 33.333 0.00 0.00 0.00 3.06
3279 4421 9.772973 ACAAAACTACAGACATATTCTACAACA 57.227 29.630 0.00 0.00 31.12 3.33
3281 4423 9.436957 AAAACTACAGACATATTCTACAACAGG 57.563 33.333 0.00 0.00 31.12 4.00
3282 4424 7.113658 ACTACAGACATATTCTACAACAGGG 57.886 40.000 0.00 0.00 31.12 4.45
3283 4425 6.668283 ACTACAGACATATTCTACAACAGGGT 59.332 38.462 0.00 0.00 31.12 4.34
3284 4426 5.734720 ACAGACATATTCTACAACAGGGTG 58.265 41.667 0.00 0.00 31.12 4.61
3285 4427 5.248477 ACAGACATATTCTACAACAGGGTGT 59.752 40.000 0.00 0.00 31.12 4.16
3286 4428 6.173339 CAGACATATTCTACAACAGGGTGTT 58.827 40.000 0.00 0.00 35.19 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.244558 TCTATCCATAGAGACCTCATCATGTT 58.755 38.462 0.00 0.00 34.63 2.71
1 2 6.798766 TCTATCCATAGAGACCTCATCATGT 58.201 40.000 0.00 0.00 34.63 3.21
2 3 7.901283 ATCTATCCATAGAGACCTCATCATG 57.099 40.000 2.82 0.00 42.20 3.07
3 4 9.590828 CATATCTATCCATAGAGACCTCATCAT 57.409 37.037 2.82 0.00 42.20 2.45
4 5 8.003629 CCATATCTATCCATAGAGACCTCATCA 58.996 40.741 2.82 0.00 42.20 3.07
5 6 8.224025 TCCATATCTATCCATAGAGACCTCATC 58.776 40.741 2.82 0.00 42.20 2.92
6 7 8.123843 TCCATATCTATCCATAGAGACCTCAT 57.876 38.462 2.82 0.00 42.20 2.90
7 8 7.530995 TCCATATCTATCCATAGAGACCTCA 57.469 40.000 2.82 0.00 42.20 3.86
8 9 8.448008 AGATCCATATCTATCCATAGAGACCTC 58.552 40.741 2.82 0.00 42.20 3.85
9 10 8.226810 CAGATCCATATCTATCCATAGAGACCT 58.773 40.741 2.82 0.00 40.65 3.85
10 11 7.039784 GCAGATCCATATCTATCCATAGAGACC 60.040 44.444 2.82 0.00 40.65 3.85
11 12 7.505248 TGCAGATCCATATCTATCCATAGAGAC 59.495 40.741 2.82 0.00 40.65 3.36
12 13 7.589993 TGCAGATCCATATCTATCCATAGAGA 58.410 38.462 2.82 0.00 40.65 3.10
13 14 7.836479 TGCAGATCCATATCTATCCATAGAG 57.164 40.000 2.82 0.00 40.65 2.43
14 15 7.234988 CCATGCAGATCCATATCTATCCATAGA 59.765 40.741 0.00 0.00 40.65 1.98
15 16 7.387643 CCATGCAGATCCATATCTATCCATAG 58.612 42.308 0.00 0.00 40.65 2.23
16 17 6.239800 GCCATGCAGATCCATATCTATCCATA 60.240 42.308 0.00 0.00 40.65 2.74
17 18 5.456330 GCCATGCAGATCCATATCTATCCAT 60.456 44.000 0.00 0.00 40.65 3.41
18 19 4.141551 GCCATGCAGATCCATATCTATCCA 60.142 45.833 0.00 0.00 40.65 3.41
19 20 4.141551 TGCCATGCAGATCCATATCTATCC 60.142 45.833 0.00 0.00 40.65 2.59
20 21 4.815308 GTGCCATGCAGATCCATATCTATC 59.185 45.833 0.00 0.00 40.65 2.08
21 22 4.682589 CGTGCCATGCAGATCCATATCTAT 60.683 45.833 0.00 0.00 40.65 1.98
22 23 3.368739 CGTGCCATGCAGATCCATATCTA 60.369 47.826 0.00 0.00 40.65 1.98
23 24 2.614734 CGTGCCATGCAGATCCATATCT 60.615 50.000 0.00 0.00 43.54 1.98
24 25 1.736126 CGTGCCATGCAGATCCATATC 59.264 52.381 0.00 0.00 40.08 1.63
25 26 1.817357 CGTGCCATGCAGATCCATAT 58.183 50.000 0.00 0.00 40.08 1.78
26 27 0.886043 GCGTGCCATGCAGATCCATA 60.886 55.000 3.49 0.00 40.08 2.74
27 28 2.191513 GCGTGCCATGCAGATCCAT 61.192 57.895 3.49 0.00 40.08 3.41
28 29 1.970352 TAGCGTGCCATGCAGATCCA 61.970 55.000 12.14 0.00 40.08 3.41
29 30 1.226686 CTAGCGTGCCATGCAGATCC 61.227 60.000 12.14 0.00 40.08 3.36
30 31 1.226686 CCTAGCGTGCCATGCAGATC 61.227 60.000 12.14 0.00 40.08 2.75
31 32 1.227764 CCTAGCGTGCCATGCAGAT 60.228 57.895 12.14 0.00 40.08 2.90
32 33 2.184020 AACCTAGCGTGCCATGCAGA 62.184 55.000 12.14 0.00 40.08 4.26
33 34 0.461870 TAACCTAGCGTGCCATGCAG 60.462 55.000 12.14 6.53 40.08 4.41
34 35 0.461870 CTAACCTAGCGTGCCATGCA 60.462 55.000 12.14 0.00 35.60 3.96
35 36 1.776034 GCTAACCTAGCGTGCCATGC 61.776 60.000 0.00 0.00 42.62 4.06
36 37 2.311294 GCTAACCTAGCGTGCCATG 58.689 57.895 0.00 0.00 42.62 3.66
37 38 4.857251 GCTAACCTAGCGTGCCAT 57.143 55.556 0.00 0.00 42.62 4.40
45 46 2.166664 GGATGATAGGCGGCTAACCTAG 59.833 54.545 23.58 0.00 42.94 3.02
46 47 2.176889 GGATGATAGGCGGCTAACCTA 58.823 52.381 23.58 5.44 43.80 3.08
47 48 0.977395 GGATGATAGGCGGCTAACCT 59.023 55.000 23.58 13.22 41.57 3.50
48 49 0.389948 CGGATGATAGGCGGCTAACC 60.390 60.000 23.58 20.03 0.00 2.85
49 50 0.601558 TCGGATGATAGGCGGCTAAC 59.398 55.000 23.58 20.48 0.00 2.34
50 51 1.272490 CTTCGGATGATAGGCGGCTAA 59.728 52.381 23.58 7.91 0.00 3.09
51 52 0.888619 CTTCGGATGATAGGCGGCTA 59.111 55.000 22.02 22.02 0.00 3.93
52 53 0.827925 TCTTCGGATGATAGGCGGCT 60.828 55.000 18.33 18.33 0.00 5.52
53 54 0.033504 TTCTTCGGATGATAGGCGGC 59.966 55.000 0.00 0.00 0.00 6.53
54 55 2.526304 TTTCTTCGGATGATAGGCGG 57.474 50.000 0.00 0.00 0.00 6.13
55 56 3.458189 ACTTTTCTTCGGATGATAGGCG 58.542 45.455 0.00 0.00 0.00 5.52
56 57 5.844004 TCTACTTTTCTTCGGATGATAGGC 58.156 41.667 0.00 0.00 0.00 3.93
57 58 8.577296 TGTATCTACTTTTCTTCGGATGATAGG 58.423 37.037 0.00 0.00 0.00 2.57
58 59 9.967346 TTGTATCTACTTTTCTTCGGATGATAG 57.033 33.333 0.00 0.00 0.00 2.08
60 61 9.838339 ATTTGTATCTACTTTTCTTCGGATGAT 57.162 29.630 0.00 0.00 0.00 2.45
128 129 9.715123 CATGCACATCTTACATTTTTCGTATAA 57.285 29.630 0.00 0.00 0.00 0.98
129 130 9.103861 TCATGCACATCTTACATTTTTCGTATA 57.896 29.630 0.00 0.00 0.00 1.47
130 131 7.984391 TCATGCACATCTTACATTTTTCGTAT 58.016 30.769 0.00 0.00 0.00 3.06
131 132 7.371126 TCATGCACATCTTACATTTTTCGTA 57.629 32.000 0.00 0.00 0.00 3.43
132 133 6.252967 TCATGCACATCTTACATTTTTCGT 57.747 33.333 0.00 0.00 0.00 3.85
133 134 7.565450 TTTCATGCACATCTTACATTTTTCG 57.435 32.000 0.00 0.00 0.00 3.46
187 188 9.883142 TTTGGTATTGATTTTCTGTGTTTCTTT 57.117 25.926 0.00 0.00 0.00 2.52
188 189 9.883142 TTTTGGTATTGATTTTCTGTGTTTCTT 57.117 25.926 0.00 0.00 0.00 2.52
196 197 9.956797 CGCTTTTATTTTGGTATTGATTTTCTG 57.043 29.630 0.00 0.00 0.00 3.02
197 198 8.655970 GCGCTTTTATTTTGGTATTGATTTTCT 58.344 29.630 0.00 0.00 0.00 2.52
198 199 8.655970 AGCGCTTTTATTTTGGTATTGATTTTC 58.344 29.630 2.64 0.00 0.00 2.29
199 200 8.442384 CAGCGCTTTTATTTTGGTATTGATTTT 58.558 29.630 7.50 0.00 0.00 1.82
200 201 7.816995 TCAGCGCTTTTATTTTGGTATTGATTT 59.183 29.630 7.50 0.00 0.00 2.17
201 202 7.319646 TCAGCGCTTTTATTTTGGTATTGATT 58.680 30.769 7.50 0.00 0.00 2.57
202 203 6.862209 TCAGCGCTTTTATTTTGGTATTGAT 58.138 32.000 7.50 0.00 0.00 2.57
203 204 6.260870 TCAGCGCTTTTATTTTGGTATTGA 57.739 33.333 7.50 0.00 0.00 2.57
204 205 6.942886 TTCAGCGCTTTTATTTTGGTATTG 57.057 33.333 7.50 0.00 0.00 1.90
205 206 7.439655 TGTTTTCAGCGCTTTTATTTTGGTATT 59.560 29.630 7.50 0.00 0.00 1.89
206 207 6.926272 TGTTTTCAGCGCTTTTATTTTGGTAT 59.074 30.769 7.50 0.00 0.00 2.73
207 208 6.273825 TGTTTTCAGCGCTTTTATTTTGGTA 58.726 32.000 7.50 0.00 0.00 3.25
208 209 5.112686 TGTTTTCAGCGCTTTTATTTTGGT 58.887 33.333 7.50 0.00 0.00 3.67
209 210 5.461737 TCTGTTTTCAGCGCTTTTATTTTGG 59.538 36.000 7.50 0.00 46.59 3.28
210 211 6.347110 GTCTGTTTTCAGCGCTTTTATTTTG 58.653 36.000 7.50 0.00 46.59 2.44
211 212 5.462068 GGTCTGTTTTCAGCGCTTTTATTTT 59.538 36.000 7.50 0.00 46.59 1.82
212 213 4.982295 GGTCTGTTTTCAGCGCTTTTATTT 59.018 37.500 7.50 0.00 46.59 1.40
213 214 4.278419 AGGTCTGTTTTCAGCGCTTTTATT 59.722 37.500 7.50 0.00 46.59 1.40
214 215 3.821033 AGGTCTGTTTTCAGCGCTTTTAT 59.179 39.130 7.50 0.00 46.59 1.40
215 216 3.211045 AGGTCTGTTTTCAGCGCTTTTA 58.789 40.909 7.50 0.00 46.59 1.52
216 217 2.024414 AGGTCTGTTTTCAGCGCTTTT 58.976 42.857 7.50 0.00 46.59 2.27
217 218 1.680338 AGGTCTGTTTTCAGCGCTTT 58.320 45.000 7.50 0.00 46.59 3.51
218 219 2.037251 TCTAGGTCTGTTTTCAGCGCTT 59.963 45.455 7.50 0.00 46.59 4.68
219 220 1.618837 TCTAGGTCTGTTTTCAGCGCT 59.381 47.619 2.64 2.64 46.59 5.92
220 221 2.080286 TCTAGGTCTGTTTTCAGCGC 57.920 50.000 0.00 0.00 46.59 5.92
221 222 4.058817 ACTTTCTAGGTCTGTTTTCAGCG 58.941 43.478 0.00 0.00 46.59 5.18
222 223 6.146347 CACTACTTTCTAGGTCTGTTTTCAGC 59.854 42.308 0.00 0.00 46.59 4.26
224 225 7.356089 TCACTACTTTCTAGGTCTGTTTTCA 57.644 36.000 0.00 0.00 0.00 2.69
225 226 8.658499 TTTCACTACTTTCTAGGTCTGTTTTC 57.342 34.615 0.00 0.00 0.00 2.29
226 227 8.265764 ACTTTCACTACTTTCTAGGTCTGTTTT 58.734 33.333 0.00 0.00 0.00 2.43
227 228 7.793036 ACTTTCACTACTTTCTAGGTCTGTTT 58.207 34.615 0.00 0.00 0.00 2.83
228 229 7.362802 ACTTTCACTACTTTCTAGGTCTGTT 57.637 36.000 0.00 0.00 0.00 3.16
229 230 6.015265 GGACTTTCACTACTTTCTAGGTCTGT 60.015 42.308 0.00 0.00 0.00 3.41
230 231 6.391537 GGACTTTCACTACTTTCTAGGTCTG 58.608 44.000 0.00 0.00 0.00 3.51
231 232 5.183522 CGGACTTTCACTACTTTCTAGGTCT 59.816 44.000 0.00 0.00 0.00 3.85
232 233 5.400703 CGGACTTTCACTACTTTCTAGGTC 58.599 45.833 0.00 0.00 0.00 3.85
233 234 4.321824 GCGGACTTTCACTACTTTCTAGGT 60.322 45.833 0.00 0.00 0.00 3.08
234 235 4.174762 GCGGACTTTCACTACTTTCTAGG 58.825 47.826 0.00 0.00 0.00 3.02
235 236 4.806330 TGCGGACTTTCACTACTTTCTAG 58.194 43.478 0.00 0.00 0.00 2.43
236 237 4.859304 TGCGGACTTTCACTACTTTCTA 57.141 40.909 0.00 0.00 0.00 2.10
237 238 3.746045 TGCGGACTTTCACTACTTTCT 57.254 42.857 0.00 0.00 0.00 2.52
238 239 5.408356 TCTATGCGGACTTTCACTACTTTC 58.592 41.667 0.00 0.00 0.00 2.62
239 240 5.401531 TCTATGCGGACTTTCACTACTTT 57.598 39.130 0.00 0.00 0.00 2.66
240 241 5.401531 TTCTATGCGGACTTTCACTACTT 57.598 39.130 0.00 0.00 0.00 2.24
241 242 5.401531 TTTCTATGCGGACTTTCACTACT 57.598 39.130 0.00 0.00 0.00 2.57
242 243 5.163884 GGTTTTCTATGCGGACTTTCACTAC 60.164 44.000 0.00 0.00 0.00 2.73
243 244 4.933400 GGTTTTCTATGCGGACTTTCACTA 59.067 41.667 0.00 0.00 0.00 2.74
244 245 3.751698 GGTTTTCTATGCGGACTTTCACT 59.248 43.478 0.00 0.00 0.00 3.41
245 246 3.500680 TGGTTTTCTATGCGGACTTTCAC 59.499 43.478 0.00 0.00 0.00 3.18
246 247 3.745799 TGGTTTTCTATGCGGACTTTCA 58.254 40.909 0.00 0.00 0.00 2.69
247 248 4.759516 TTGGTTTTCTATGCGGACTTTC 57.240 40.909 0.00 0.00 0.00 2.62
248 249 4.339814 TGTTTGGTTTTCTATGCGGACTTT 59.660 37.500 0.00 0.00 0.00 2.66
249 250 3.886505 TGTTTGGTTTTCTATGCGGACTT 59.113 39.130 0.00 0.00 0.00 3.01
250 251 3.252458 GTGTTTGGTTTTCTATGCGGACT 59.748 43.478 0.00 0.00 0.00 3.85
251 252 3.003897 TGTGTTTGGTTTTCTATGCGGAC 59.996 43.478 0.00 0.00 0.00 4.79
252 253 3.215151 TGTGTTTGGTTTTCTATGCGGA 58.785 40.909 0.00 0.00 0.00 5.54
253 254 3.634568 TGTGTTTGGTTTTCTATGCGG 57.365 42.857 0.00 0.00 0.00 5.69
254 255 5.277825 TCTTTGTGTTTGGTTTTCTATGCG 58.722 37.500 0.00 0.00 0.00 4.73
255 256 7.532682 TTTCTTTGTGTTTGGTTTTCTATGC 57.467 32.000 0.00 0.00 0.00 3.14
256 257 8.930760 TGTTTTCTTTGTGTTTGGTTTTCTATG 58.069 29.630 0.00 0.00 0.00 2.23
257 258 8.931775 GTGTTTTCTTTGTGTTTGGTTTTCTAT 58.068 29.630 0.00 0.00 0.00 1.98
258 259 7.926555 TGTGTTTTCTTTGTGTTTGGTTTTCTA 59.073 29.630 0.00 0.00 0.00 2.10
259 260 6.763610 TGTGTTTTCTTTGTGTTTGGTTTTCT 59.236 30.769 0.00 0.00 0.00 2.52
260 261 6.848800 GTGTGTTTTCTTTGTGTTTGGTTTTC 59.151 34.615 0.00 0.00 0.00 2.29
261 262 6.316390 TGTGTGTTTTCTTTGTGTTTGGTTTT 59.684 30.769 0.00 0.00 0.00 2.43
262 263 5.817816 TGTGTGTTTTCTTTGTGTTTGGTTT 59.182 32.000 0.00 0.00 0.00 3.27
263 264 5.360591 TGTGTGTTTTCTTTGTGTTTGGTT 58.639 33.333 0.00 0.00 0.00 3.67
264 265 4.950050 TGTGTGTTTTCTTTGTGTTTGGT 58.050 34.783 0.00 0.00 0.00 3.67
265 266 5.914085 TTGTGTGTTTTCTTTGTGTTTGG 57.086 34.783 0.00 0.00 0.00 3.28
266 267 8.119226 TCTTTTTGTGTGTTTTCTTTGTGTTTG 58.881 29.630 0.00 0.00 0.00 2.93
267 268 8.202745 TCTTTTTGTGTGTTTTCTTTGTGTTT 57.797 26.923 0.00 0.00 0.00 2.83
268 269 7.778470 TCTTTTTGTGTGTTTTCTTTGTGTT 57.222 28.000 0.00 0.00 0.00 3.32
269 270 7.778470 TTCTTTTTGTGTGTTTTCTTTGTGT 57.222 28.000 0.00 0.00 0.00 3.72
275 276 9.936759 TCCTTTTATTCTTTTTGTGTGTTTTCT 57.063 25.926 0.00 0.00 0.00 2.52
295 296 9.944663 GTTTCTTGTGTTTTTCTTTTTCCTTTT 57.055 25.926 0.00 0.00 0.00 2.27
296 297 8.564574 GGTTTCTTGTGTTTTTCTTTTTCCTTT 58.435 29.630 0.00 0.00 0.00 3.11
297 298 7.717436 TGGTTTCTTGTGTTTTTCTTTTTCCTT 59.283 29.630 0.00 0.00 0.00 3.36
298 299 7.172532 GTGGTTTCTTGTGTTTTTCTTTTTCCT 59.827 33.333 0.00 0.00 0.00 3.36
299 300 7.041712 TGTGGTTTCTTGTGTTTTTCTTTTTCC 60.042 33.333 0.00 0.00 0.00 3.13
300 301 7.856556 TGTGGTTTCTTGTGTTTTTCTTTTTC 58.143 30.769 0.00 0.00 0.00 2.29
301 302 7.793927 TGTGGTTTCTTGTGTTTTTCTTTTT 57.206 28.000 0.00 0.00 0.00 1.94
302 303 7.793927 TTGTGGTTTCTTGTGTTTTTCTTTT 57.206 28.000 0.00 0.00 0.00 2.27
303 304 7.793927 TTTGTGGTTTCTTGTGTTTTTCTTT 57.206 28.000 0.00 0.00 0.00 2.52
304 305 7.793927 TTTTGTGGTTTCTTGTGTTTTTCTT 57.206 28.000 0.00 0.00 0.00 2.52
305 306 7.793927 TTTTTGTGGTTTCTTGTGTTTTTCT 57.206 28.000 0.00 0.00 0.00 2.52
357 358 8.749354 ACAGTTTTAGAATCTTCCAGTGTTTTT 58.251 29.630 0.00 0.00 0.00 1.94
358 359 8.293699 ACAGTTTTAGAATCTTCCAGTGTTTT 57.706 30.769 0.00 0.00 0.00 2.43
359 360 7.881775 ACAGTTTTAGAATCTTCCAGTGTTT 57.118 32.000 0.00 0.00 0.00 2.83
360 361 7.881775 AACAGTTTTAGAATCTTCCAGTGTT 57.118 32.000 0.00 0.00 0.00 3.32
361 362 7.881775 AAACAGTTTTAGAATCTTCCAGTGT 57.118 32.000 0.00 0.00 0.00 3.55
366 367 9.561270 GCAGATAAAACAGTTTTAGAATCTTCC 57.439 33.333 20.52 10.95 38.40 3.46
367 368 9.561270 GGCAGATAAAACAGTTTTAGAATCTTC 57.439 33.333 20.52 14.48 38.40 2.87
368 369 9.077885 TGGCAGATAAAACAGTTTTAGAATCTT 57.922 29.630 20.52 5.96 38.40 2.40
369 370 8.635765 TGGCAGATAAAACAGTTTTAGAATCT 57.364 30.769 20.52 16.80 38.40 2.40
370 371 9.508567 GATGGCAGATAAAACAGTTTTAGAATC 57.491 33.333 20.52 15.19 38.40 2.52
371 372 8.470002 GGATGGCAGATAAAACAGTTTTAGAAT 58.530 33.333 20.52 8.13 38.40 2.40
372 373 7.669722 AGGATGGCAGATAAAACAGTTTTAGAA 59.330 33.333 20.52 3.78 38.40 2.10
373 374 7.175104 AGGATGGCAGATAAAACAGTTTTAGA 58.825 34.615 20.52 4.45 38.40 2.10
374 375 7.396540 AGGATGGCAGATAAAACAGTTTTAG 57.603 36.000 20.52 10.64 38.40 1.85
375 376 8.107095 ACTAGGATGGCAGATAAAACAGTTTTA 58.893 33.333 18.71 18.71 39.24 1.52
376 377 6.948309 ACTAGGATGGCAGATAAAACAGTTTT 59.052 34.615 15.58 15.58 36.67 2.43
377 378 6.485171 ACTAGGATGGCAGATAAAACAGTTT 58.515 36.000 0.00 0.00 0.00 2.66
378 379 6.067217 ACTAGGATGGCAGATAAAACAGTT 57.933 37.500 0.00 0.00 0.00 3.16
379 380 5.700402 ACTAGGATGGCAGATAAAACAGT 57.300 39.130 0.00 0.00 0.00 3.55
380 381 8.506168 TTTTACTAGGATGGCAGATAAAACAG 57.494 34.615 0.00 0.00 0.00 3.16
381 382 8.325787 TCTTTTACTAGGATGGCAGATAAAACA 58.674 33.333 0.00 0.00 0.00 2.83
382 383 8.732746 TCTTTTACTAGGATGGCAGATAAAAC 57.267 34.615 0.00 0.00 0.00 2.43
383 384 9.174166 GTTCTTTTACTAGGATGGCAGATAAAA 57.826 33.333 0.00 0.00 0.00 1.52
384 385 8.325787 TGTTCTTTTACTAGGATGGCAGATAAA 58.674 33.333 0.00 0.00 0.00 1.40
385 386 7.857456 TGTTCTTTTACTAGGATGGCAGATAA 58.143 34.615 0.00 0.00 0.00 1.75
386 387 7.432148 TGTTCTTTTACTAGGATGGCAGATA 57.568 36.000 0.00 0.00 0.00 1.98
387 388 6.313519 TGTTCTTTTACTAGGATGGCAGAT 57.686 37.500 0.00 0.00 0.00 2.90
388 389 5.755409 TGTTCTTTTACTAGGATGGCAGA 57.245 39.130 0.00 0.00 0.00 4.26
389 390 5.163713 GCTTGTTCTTTTACTAGGATGGCAG 60.164 44.000 0.00 0.00 0.00 4.85
390 391 4.700213 GCTTGTTCTTTTACTAGGATGGCA 59.300 41.667 0.00 0.00 0.00 4.92
391 392 4.096532 GGCTTGTTCTTTTACTAGGATGGC 59.903 45.833 0.00 0.00 0.00 4.40
392 393 4.640647 GGGCTTGTTCTTTTACTAGGATGG 59.359 45.833 0.00 0.00 0.00 3.51
393 394 5.501156 AGGGCTTGTTCTTTTACTAGGATG 58.499 41.667 0.00 0.00 0.00 3.51
394 395 5.489278 AGAGGGCTTGTTCTTTTACTAGGAT 59.511 40.000 0.00 0.00 0.00 3.24
395 396 4.844655 AGAGGGCTTGTTCTTTTACTAGGA 59.155 41.667 0.00 0.00 0.00 2.94
396 397 5.167303 AGAGGGCTTGTTCTTTTACTAGG 57.833 43.478 0.00 0.00 0.00 3.02
397 398 9.699703 GATATAGAGGGCTTGTTCTTTTACTAG 57.300 37.037 0.00 0.00 0.00 2.57
398 399 9.209048 TGATATAGAGGGCTTGTTCTTTTACTA 57.791 33.333 0.00 0.00 0.00 1.82
399 400 8.090788 TGATATAGAGGGCTTGTTCTTTTACT 57.909 34.615 0.00 0.00 0.00 2.24
400 401 8.732746 TTGATATAGAGGGCTTGTTCTTTTAC 57.267 34.615 0.00 0.00 0.00 2.01
401 402 9.174166 GTTTGATATAGAGGGCTTGTTCTTTTA 57.826 33.333 0.00 0.00 0.00 1.52
402 403 7.148239 CGTTTGATATAGAGGGCTTGTTCTTTT 60.148 37.037 0.00 0.00 0.00 2.27
403 404 6.316390 CGTTTGATATAGAGGGCTTGTTCTTT 59.684 38.462 0.00 0.00 0.00 2.52
404 405 5.817816 CGTTTGATATAGAGGGCTTGTTCTT 59.182 40.000 0.00 0.00 0.00 2.52
405 406 5.128827 TCGTTTGATATAGAGGGCTTGTTCT 59.871 40.000 0.00 0.00 0.00 3.01
406 407 5.357257 TCGTTTGATATAGAGGGCTTGTTC 58.643 41.667 0.00 0.00 0.00 3.18
407 408 5.353394 TCGTTTGATATAGAGGGCTTGTT 57.647 39.130 0.00 0.00 0.00 2.83
408 409 4.202264 CCTCGTTTGATATAGAGGGCTTGT 60.202 45.833 2.61 0.00 44.78 3.16
409 410 4.310769 CCTCGTTTGATATAGAGGGCTTG 58.689 47.826 2.61 0.00 44.78 4.01
410 411 4.608948 CCTCGTTTGATATAGAGGGCTT 57.391 45.455 2.61 0.00 44.78 4.35
415 416 5.336849 CCCTAAGGCCTCGTTTGATATAGAG 60.337 48.000 5.23 0.00 0.00 2.43
416 417 4.527038 CCCTAAGGCCTCGTTTGATATAGA 59.473 45.833 5.23 0.00 0.00 1.98
417 418 4.527038 TCCCTAAGGCCTCGTTTGATATAG 59.473 45.833 5.23 0.00 0.00 1.31
418 419 4.485875 TCCCTAAGGCCTCGTTTGATATA 58.514 43.478 5.23 0.00 0.00 0.86
419 420 3.314693 TCCCTAAGGCCTCGTTTGATAT 58.685 45.455 5.23 0.00 0.00 1.63
420 421 2.698797 CTCCCTAAGGCCTCGTTTGATA 59.301 50.000 5.23 0.00 0.00 2.15
421 422 1.486726 CTCCCTAAGGCCTCGTTTGAT 59.513 52.381 5.23 0.00 0.00 2.57
422 423 0.902531 CTCCCTAAGGCCTCGTTTGA 59.097 55.000 5.23 0.00 0.00 2.69
423 424 0.613777 ACTCCCTAAGGCCTCGTTTG 59.386 55.000 5.23 0.00 0.00 2.93
424 425 1.278413 GAACTCCCTAAGGCCTCGTTT 59.722 52.381 5.23 0.00 0.00 3.60
425 426 0.903236 GAACTCCCTAAGGCCTCGTT 59.097 55.000 5.23 2.87 0.00 3.85
426 427 0.252103 TGAACTCCCTAAGGCCTCGT 60.252 55.000 5.23 0.00 0.00 4.18
427 428 0.902531 TTGAACTCCCTAAGGCCTCG 59.097 55.000 5.23 0.00 0.00 4.63
428 429 2.505819 TGATTGAACTCCCTAAGGCCTC 59.494 50.000 5.23 0.00 0.00 4.70
429 430 2.562296 TGATTGAACTCCCTAAGGCCT 58.438 47.619 0.00 0.00 0.00 5.19
430 431 3.217626 CATGATTGAACTCCCTAAGGCC 58.782 50.000 0.00 0.00 0.00 5.19
431 432 3.891049 ACATGATTGAACTCCCTAAGGC 58.109 45.455 0.00 0.00 0.00 4.35
432 433 5.059833 GCTACATGATTGAACTCCCTAAGG 58.940 45.833 0.00 0.00 0.00 2.69
433 434 4.747108 CGCTACATGATTGAACTCCCTAAG 59.253 45.833 0.00 0.00 0.00 2.18
434 435 4.693283 CGCTACATGATTGAACTCCCTAA 58.307 43.478 0.00 0.00 0.00 2.69
435 436 3.492656 GCGCTACATGATTGAACTCCCTA 60.493 47.826 0.00 0.00 0.00 3.53
436 437 2.743183 GCGCTACATGATTGAACTCCCT 60.743 50.000 0.00 0.00 0.00 4.20
437 438 1.599542 GCGCTACATGATTGAACTCCC 59.400 52.381 0.00 0.00 0.00 4.30
438 439 2.279741 TGCGCTACATGATTGAACTCC 58.720 47.619 9.73 0.00 0.00 3.85
449 450 1.391577 TGCCAATTCATGCGCTACAT 58.608 45.000 9.73 0.00 40.66 2.29
450 451 1.172175 TTGCCAATTCATGCGCTACA 58.828 45.000 9.73 0.00 0.00 2.74
451 452 2.276472 TTTGCCAATTCATGCGCTAC 57.724 45.000 9.73 0.00 0.00 3.58
452 453 3.188492 CATTTTGCCAATTCATGCGCTA 58.812 40.909 9.73 0.00 0.00 4.26
453 454 2.004017 CATTTTGCCAATTCATGCGCT 58.996 42.857 9.73 0.00 0.00 5.92
454 455 1.062880 CCATTTTGCCAATTCATGCGC 59.937 47.619 0.00 0.00 0.00 6.09
455 456 1.666700 CCCATTTTGCCAATTCATGCG 59.333 47.619 0.00 0.00 0.00 4.73
456 457 1.402613 GCCCATTTTGCCAATTCATGC 59.597 47.619 0.00 0.00 0.00 4.06
457 458 2.993937 AGCCCATTTTGCCAATTCATG 58.006 42.857 0.00 0.00 0.00 3.07
458 459 3.135167 CCTAGCCCATTTTGCCAATTCAT 59.865 43.478 0.00 0.00 0.00 2.57
459 460 2.500910 CCTAGCCCATTTTGCCAATTCA 59.499 45.455 0.00 0.00 0.00 2.57
460 461 2.501316 ACCTAGCCCATTTTGCCAATTC 59.499 45.455 0.00 0.00 0.00 2.17
461 462 2.550175 ACCTAGCCCATTTTGCCAATT 58.450 42.857 0.00 0.00 0.00 2.32
462 463 2.252535 ACCTAGCCCATTTTGCCAAT 57.747 45.000 0.00 0.00 0.00 3.16
463 464 2.022718 AACCTAGCCCATTTTGCCAA 57.977 45.000 0.00 0.00 0.00 4.52
464 465 1.622811 CAAACCTAGCCCATTTTGCCA 59.377 47.619 0.00 0.00 0.00 4.92
465 466 1.675714 GCAAACCTAGCCCATTTTGCC 60.676 52.381 10.74 0.00 45.24 4.52
466 467 1.725641 GCAAACCTAGCCCATTTTGC 58.274 50.000 7.45 7.45 44.95 3.68
467 468 2.385013 GGCAAACCTAGCCCATTTTG 57.615 50.000 0.00 0.00 46.50 2.44
475 476 0.470341 CTAGGAGGGGCAAACCTAGC 59.530 60.000 13.96 0.00 44.02 3.42
477 478 1.365028 AGACTAGGAGGGGCAAACCTA 59.635 52.381 0.00 0.00 42.10 3.08
478 479 0.119358 AGACTAGGAGGGGCAAACCT 59.881 55.000 0.00 0.00 45.57 3.50
479 480 0.992695 AAGACTAGGAGGGGCAAACC 59.007 55.000 0.00 0.00 39.11 3.27
480 481 2.437413 CAAAGACTAGGAGGGGCAAAC 58.563 52.381 0.00 0.00 0.00 2.93
481 482 1.354368 CCAAAGACTAGGAGGGGCAAA 59.646 52.381 0.00 0.00 0.00 3.68
482 483 0.991920 CCAAAGACTAGGAGGGGCAA 59.008 55.000 0.00 0.00 0.00 4.52
483 484 0.914417 CCCAAAGACTAGGAGGGGCA 60.914 60.000 0.00 0.00 35.83 5.36
484 485 0.914902 ACCCAAAGACTAGGAGGGGC 60.915 60.000 0.00 0.00 43.96 5.80
485 486 2.023307 TCTACCCAAAGACTAGGAGGGG 60.023 54.545 0.00 8.35 43.96 4.79
486 487 3.032459 GTCTACCCAAAGACTAGGAGGG 58.968 54.545 0.00 0.00 42.21 4.30
494 495 0.896226 AGCGGAGTCTACCCAAAGAC 59.104 55.000 0.00 0.00 45.20 3.01
495 496 1.183549 GAGCGGAGTCTACCCAAAGA 58.816 55.000 0.00 0.00 0.00 2.52
496 497 0.175989 GGAGCGGAGTCTACCCAAAG 59.824 60.000 0.00 0.00 0.00 2.77
497 498 0.543410 TGGAGCGGAGTCTACCCAAA 60.543 55.000 0.00 0.00 0.00 3.28
498 499 0.543410 TTGGAGCGGAGTCTACCCAA 60.543 55.000 0.00 0.00 0.00 4.12
499 500 0.543410 TTTGGAGCGGAGTCTACCCA 60.543 55.000 0.00 0.00 0.00 4.51
500 501 0.175989 CTTTGGAGCGGAGTCTACCC 59.824 60.000 0.00 0.00 0.00 3.69
501 502 0.175989 CCTTTGGAGCGGAGTCTACC 59.824 60.000 0.00 0.00 0.00 3.18
502 503 1.135053 GTCCTTTGGAGCGGAGTCTAC 60.135 57.143 0.00 0.00 29.39 2.59
503 504 1.183549 GTCCTTTGGAGCGGAGTCTA 58.816 55.000 0.00 0.00 29.39 2.59
504 505 0.543174 AGTCCTTTGGAGCGGAGTCT 60.543 55.000 0.00 0.00 29.39 3.24
505 506 0.321996 AAGTCCTTTGGAGCGGAGTC 59.678 55.000 0.00 0.00 31.86 3.36
506 507 0.035458 CAAGTCCTTTGGAGCGGAGT 59.965 55.000 0.00 0.00 34.48 3.85
507 508 0.321671 TCAAGTCCTTTGGAGCGGAG 59.678 55.000 0.00 0.00 37.39 4.63
508 509 0.984230 ATCAAGTCCTTTGGAGCGGA 59.016 50.000 0.00 0.00 37.39 5.54
509 510 1.740025 GAATCAAGTCCTTTGGAGCGG 59.260 52.381 0.00 0.00 37.39 5.52
510 511 1.740025 GGAATCAAGTCCTTTGGAGCG 59.260 52.381 0.00 0.00 37.39 5.03
511 512 3.078891 AGGAATCAAGTCCTTTGGAGC 57.921 47.619 0.00 0.00 46.42 4.70
519 520 5.755861 GCATACAAGTAGAGGAATCAAGTCC 59.244 44.000 0.00 0.00 38.03 3.85
520 521 5.460419 CGCATACAAGTAGAGGAATCAAGTC 59.540 44.000 0.00 0.00 0.00 3.01
521 522 5.105310 ACGCATACAAGTAGAGGAATCAAGT 60.105 40.000 0.00 0.00 0.00 3.16
522 523 5.352284 ACGCATACAAGTAGAGGAATCAAG 58.648 41.667 0.00 0.00 0.00 3.02
523 524 5.105513 TGACGCATACAAGTAGAGGAATCAA 60.106 40.000 0.00 0.00 0.00 2.57
524 525 4.401202 TGACGCATACAAGTAGAGGAATCA 59.599 41.667 0.00 0.00 0.00 2.57
525 526 4.933330 TGACGCATACAAGTAGAGGAATC 58.067 43.478 0.00 0.00 0.00 2.52
526 527 5.339008 TTGACGCATACAAGTAGAGGAAT 57.661 39.130 0.00 0.00 0.00 3.01
527 528 4.794278 TTGACGCATACAAGTAGAGGAA 57.206 40.909 0.00 0.00 0.00 3.36
528 529 5.109210 CAATTGACGCATACAAGTAGAGGA 58.891 41.667 0.00 0.00 0.00 3.71
529 530 4.870426 ACAATTGACGCATACAAGTAGAGG 59.130 41.667 13.59 0.00 0.00 3.69
530 531 5.576774 TGACAATTGACGCATACAAGTAGAG 59.423 40.000 13.59 0.00 0.00 2.43
531 532 5.474825 TGACAATTGACGCATACAAGTAGA 58.525 37.500 13.59 0.00 0.00 2.59
532 533 5.778161 TGACAATTGACGCATACAAGTAG 57.222 39.130 13.59 0.00 0.00 2.57
533 534 5.872070 TCATGACAATTGACGCATACAAGTA 59.128 36.000 13.59 0.00 0.00 2.24
534 535 4.694982 TCATGACAATTGACGCATACAAGT 59.305 37.500 13.59 0.00 0.00 3.16
535 536 5.220557 TCATGACAATTGACGCATACAAG 57.779 39.130 13.59 1.89 0.00 3.16
536 537 5.619625 TTCATGACAATTGACGCATACAA 57.380 34.783 13.59 6.37 0.00 2.41
537 538 5.220835 GGATTCATGACAATTGACGCATACA 60.221 40.000 13.59 3.62 0.00 2.29
538 539 5.207768 GGATTCATGACAATTGACGCATAC 58.792 41.667 13.59 5.54 0.00 2.39
539 540 4.880696 TGGATTCATGACAATTGACGCATA 59.119 37.500 13.59 0.00 0.00 3.14
540 541 3.695556 TGGATTCATGACAATTGACGCAT 59.304 39.130 13.59 9.59 0.00 4.73
541 542 3.080319 TGGATTCATGACAATTGACGCA 58.920 40.909 13.59 7.61 0.00 5.24
542 543 3.763097 TGGATTCATGACAATTGACGC 57.237 42.857 13.59 1.65 0.00 5.19
543 544 6.254157 GGAATTTGGATTCATGACAATTGACG 59.746 38.462 13.59 0.00 42.82 4.35
544 545 7.063780 GTGGAATTTGGATTCATGACAATTGAC 59.936 37.037 13.59 6.72 42.82 3.18
545 546 7.098477 GTGGAATTTGGATTCATGACAATTGA 58.902 34.615 13.59 0.00 42.82 2.57
546 547 6.874664 TGTGGAATTTGGATTCATGACAATTG 59.125 34.615 3.24 3.24 42.82 2.32
547 548 7.006865 TGTGGAATTTGGATTCATGACAATT 57.993 32.000 0.00 0.00 42.82 2.32
548 549 6.608539 TGTGGAATTTGGATTCATGACAAT 57.391 33.333 0.00 0.00 42.82 2.71
549 550 6.210984 TCATGTGGAATTTGGATTCATGACAA 59.789 34.615 0.00 0.00 42.82 3.18
550 551 5.715753 TCATGTGGAATTTGGATTCATGACA 59.284 36.000 0.00 0.00 42.82 3.58
551 552 6.211587 TCATGTGGAATTTGGATTCATGAC 57.788 37.500 0.00 0.00 42.82 3.06
552 553 6.854091 TTCATGTGGAATTTGGATTCATGA 57.146 33.333 0.00 0.00 42.82 3.07
559 560 4.098654 ACGTTGTTTCATGTGGAATTTGGA 59.901 37.500 0.00 0.00 34.91 3.53
560 561 4.208873 CACGTTGTTTCATGTGGAATTTGG 59.791 41.667 0.00 0.00 34.91 3.28
562 563 3.801594 GCACGTTGTTTCATGTGGAATTT 59.198 39.130 0.00 0.00 34.91 1.82
578 579 2.139118 GAAAGAGAAGCTCTGCACGTT 58.861 47.619 0.00 0.00 40.28 3.99
598 600 0.109365 CCAGATCTCTCCGCGCATAG 60.109 60.000 8.75 3.53 0.00 2.23
647 658 9.723601 TGATAATTATGGTCAAATGATCGATCA 57.276 29.630 29.09 29.09 41.70 2.92
648 659 9.979270 GTGATAATTATGGTCAAATGATCGATC 57.021 33.333 18.72 18.72 29.77 3.69
654 665 9.013229 GCCATAGTGATAATTATGGTCAAATGA 57.987 33.333 12.16 0.00 45.26 2.57
656 667 8.938801 TGCCATAGTGATAATTATGGTCAAAT 57.061 30.769 12.16 0.00 45.26 2.32
701 716 4.458295 GGCGTACATAGTGGATCTAGCTAA 59.542 45.833 0.00 0.00 31.67 3.09
790 805 0.035152 ATTCTCGTTGATGGCTGCCA 60.035 50.000 25.65 25.65 38.19 4.92
794 809 0.179073 CGGGATTCTCGTTGATGGCT 60.179 55.000 0.00 0.00 0.00 4.75
836 855 2.743636 TCGCTGGAAGTGGAAGTTAG 57.256 50.000 0.00 0.00 46.62 2.34
837 856 3.478857 TTTCGCTGGAAGTGGAAGTTA 57.521 42.857 0.00 0.00 46.62 2.24
838 857 2.341846 TTTCGCTGGAAGTGGAAGTT 57.658 45.000 0.00 0.00 46.62 2.66
884 909 5.594926 TCGATAGTGTGTACGTGAGAGATA 58.405 41.667 0.00 0.00 37.40 1.98
941 972 1.003118 TCGAGGTGCCATTGTTAGCTT 59.997 47.619 0.00 0.00 0.00 3.74
947 978 0.460284 GTCGATCGAGGTGCCATTGT 60.460 55.000 20.09 0.00 0.00 2.71
971 1005 2.111878 GACTGGGCAGTGCTGTGT 59.888 61.111 16.11 10.81 42.66 3.72
982 1027 4.756135 CCACATTTTGAAATTTGGACTGGG 59.244 41.667 13.78 0.00 44.97 4.45
1011 1056 1.799548 GCGACGAGGATGAGGTCTTTC 60.800 57.143 0.00 0.00 0.00 2.62
1575 1657 2.765785 CAGAGCGCGAACGAGTTG 59.234 61.111 12.10 0.00 43.93 3.16
1773 1873 2.431942 GGTGCGTACGTGTCCAGG 60.432 66.667 17.90 0.00 0.00 4.45
2004 2125 3.983420 CCCTCCAGCCCAAAGCCA 61.983 66.667 0.00 0.00 45.47 4.75
2079 2943 3.291167 GAAACCGAAGCACGCCGTC 62.291 63.158 0.00 0.00 41.07 4.79
2187 3051 1.116308 TCTCCTCGTTGAACACCACA 58.884 50.000 0.00 0.00 0.00 4.17
2244 3111 1.303155 GTTGCTGCAGAAGAGCCCT 60.303 57.895 20.43 0.00 35.43 5.19
2292 3159 3.241067 TCCATGCGTGTAACTAAGACC 57.759 47.619 4.96 0.00 31.75 3.85
2295 3162 5.687730 CACTAGATCCATGCGTGTAACTAAG 59.312 44.000 4.96 0.00 31.75 2.18
2305 3172 1.945387 AGCAACACTAGATCCATGCG 58.055 50.000 0.00 0.00 38.74 4.73
2347 3214 2.356135 AGGAAATCCGAAATCCACACG 58.644 47.619 5.81 0.00 42.08 4.49
2360 3227 8.778358 AGTCGAAATAATAGATGCAAGGAAATC 58.222 33.333 0.00 0.00 0.00 2.17
2407 3279 7.485418 ACACGTGTGACACTTATTATTTGAA 57.515 32.000 22.71 0.00 31.34 2.69
2443 3315 4.240881 ACTGTGATATTTGATGCAGGGT 57.759 40.909 0.00 0.00 0.00 4.34
2458 3330 1.810755 CGCTCCTGTACTGTACTGTGA 59.189 52.381 17.98 14.44 0.00 3.58
2520 3400 6.757897 TGATTCAACCATGATCACCTTTAC 57.242 37.500 0.00 0.00 34.96 2.01
2571 3452 8.242085 TGTTGCGAAAATAATCGACTTAGTAA 57.758 30.769 0.24 0.00 45.48 2.24
2572 3453 7.815398 TGTTGCGAAAATAATCGACTTAGTA 57.185 32.000 0.24 0.00 45.48 1.82
2633 3514 1.345741 CTGACTTGAGCTCCAACTCCA 59.654 52.381 12.15 1.11 35.72 3.86
2761 3655 6.064717 AGTTAGCCCATTGATTGGTATCTTC 58.935 40.000 0.00 0.00 44.83 2.87
2809 3703 6.877611 TCCAAGACATCTTTTCCAAGTAAC 57.122 37.500 0.00 0.00 33.11 2.50
2942 3839 2.958016 GCGCCACCACCGTATACG 60.958 66.667 18.40 18.40 39.44 3.06
2960 4102 1.215655 GCCACATCTCGGTATCACGC 61.216 60.000 0.00 0.00 0.00 5.34
2961 4103 0.597637 GGCCACATCTCGGTATCACG 60.598 60.000 0.00 0.00 0.00 4.35
2962 4104 0.597637 CGGCCACATCTCGGTATCAC 60.598 60.000 2.24 0.00 0.00 3.06
2976 4118 7.389330 CCATATAAAGACACATTTATACGGCCA 59.611 37.037 2.24 0.00 39.30 5.36
2980 4122 9.424319 AGAGCCATATAAAGACACATTTATACG 57.576 33.333 2.04 0.00 39.30 3.06
2985 4127 6.382869 GCAGAGCCATATAAAGACACATTT 57.617 37.500 0.00 0.00 0.00 2.32
3087 4229 1.743394 GGTTTCGGATTCATCACCACC 59.257 52.381 0.00 0.00 0.00 4.61
3117 4259 6.366332 GTGAGATGACGTTTGAGTAATGAAGT 59.634 38.462 0.00 0.00 0.00 3.01
3131 4273 0.036952 CAGGCCAAGTGAGATGACGT 60.037 55.000 5.01 0.00 0.00 4.34
3142 4284 2.286365 TAACAAGGAACCAGGCCAAG 57.714 50.000 5.01 0.00 0.00 3.61
3182 4324 6.056090 TGTACATGCCCTAACTAAACATGA 57.944 37.500 0.00 0.00 40.39 3.07
3183 4325 6.150307 TGTTGTACATGCCCTAACTAAACATG 59.850 38.462 0.00 0.00 42.92 3.21
3184 4326 6.242396 TGTTGTACATGCCCTAACTAAACAT 58.758 36.000 0.00 0.00 0.00 2.71
3185 4327 5.622180 TGTTGTACATGCCCTAACTAAACA 58.378 37.500 0.00 0.00 0.00 2.83
3186 4328 5.704053 ACTGTTGTACATGCCCTAACTAAAC 59.296 40.000 0.00 0.00 0.00 2.01
3187 4329 5.871834 ACTGTTGTACATGCCCTAACTAAA 58.128 37.500 0.00 0.00 0.00 1.85
3188 4330 5.492855 ACTGTTGTACATGCCCTAACTAA 57.507 39.130 0.00 0.00 0.00 2.24
3190 4332 4.202419 TGAACTGTTGTACATGCCCTAACT 60.202 41.667 0.00 0.00 0.00 2.24
3191 4333 4.069304 TGAACTGTTGTACATGCCCTAAC 58.931 43.478 0.00 0.00 0.00 2.34
3192 4334 4.041075 TCTGAACTGTTGTACATGCCCTAA 59.959 41.667 0.00 0.00 0.00 2.69
3193 4335 3.580895 TCTGAACTGTTGTACATGCCCTA 59.419 43.478 0.00 0.00 0.00 3.53
3194 4336 2.371841 TCTGAACTGTTGTACATGCCCT 59.628 45.455 0.00 0.00 0.00 5.19
3195 4337 2.484264 GTCTGAACTGTTGTACATGCCC 59.516 50.000 0.00 0.00 0.00 5.36
3196 4338 3.138304 TGTCTGAACTGTTGTACATGCC 58.862 45.455 0.00 0.00 0.00 4.40
3197 4339 4.527564 GTTGTCTGAACTGTTGTACATGC 58.472 43.478 0.00 0.00 0.00 4.06
3198 4340 4.318760 CGGTTGTCTGAACTGTTGTACATG 60.319 45.833 0.00 0.00 0.00 3.21
3199 4341 3.807622 CGGTTGTCTGAACTGTTGTACAT 59.192 43.478 0.00 0.00 0.00 2.29
3200 4342 3.191669 CGGTTGTCTGAACTGTTGTACA 58.808 45.455 0.00 0.00 0.00 2.90
3201 4343 2.033151 GCGGTTGTCTGAACTGTTGTAC 60.033 50.000 0.00 0.00 0.00 2.90
3202 4344 2.159014 AGCGGTTGTCTGAACTGTTGTA 60.159 45.455 0.00 0.00 0.00 2.41
3203 4345 1.014352 GCGGTTGTCTGAACTGTTGT 58.986 50.000 0.00 0.00 0.00 3.32
3204 4346 1.003545 CAGCGGTTGTCTGAACTGTTG 60.004 52.381 0.00 0.00 33.54 3.33
3205 4347 1.299541 CAGCGGTTGTCTGAACTGTT 58.700 50.000 0.00 0.00 33.54 3.16
3206 4348 0.178068 ACAGCGGTTGTCTGAACTGT 59.822 50.000 0.00 0.00 33.87 3.55
3207 4349 2.992089 ACAGCGGTTGTCTGAACTG 58.008 52.632 0.00 0.00 33.87 3.16
3215 4357 8.372459 TGGAATAATATTATAGACAGCGGTTGT 58.628 33.333 8.39 0.00 44.55 3.32
3216 4358 8.656849 GTGGAATAATATTATAGACAGCGGTTG 58.343 37.037 8.39 0.00 0.00 3.77
3217 4359 7.544566 CGTGGAATAATATTATAGACAGCGGTT 59.455 37.037 8.39 0.00 0.00 4.44
3218 4360 7.033791 CGTGGAATAATATTATAGACAGCGGT 58.966 38.462 8.39 0.00 0.00 5.68
3219 4361 7.033791 ACGTGGAATAATATTATAGACAGCGG 58.966 38.462 8.39 4.23 0.00 5.52
3220 4362 7.753580 TGACGTGGAATAATATTATAGACAGCG 59.246 37.037 8.39 13.74 0.00 5.18
3221 4363 8.861101 GTGACGTGGAATAATATTATAGACAGC 58.139 37.037 8.39 2.55 0.00 4.40
3234 4376 9.275398 AGTTTTGTTATAAGTGACGTGGAATAA 57.725 29.630 0.00 0.00 0.00 1.40
3235 4377 8.836268 AGTTTTGTTATAAGTGACGTGGAATA 57.164 30.769 0.00 0.00 0.00 1.75
3236 4378 7.739498 AGTTTTGTTATAAGTGACGTGGAAT 57.261 32.000 0.00 0.00 0.00 3.01
3237 4379 7.710044 TGTAGTTTTGTTATAAGTGACGTGGAA 59.290 33.333 0.00 0.00 0.00 3.53
3238 4380 7.208777 TGTAGTTTTGTTATAAGTGACGTGGA 58.791 34.615 0.00 0.00 0.00 4.02
3239 4381 7.383029 TCTGTAGTTTTGTTATAAGTGACGTGG 59.617 37.037 0.00 0.00 0.00 4.94
3240 4382 8.212495 GTCTGTAGTTTTGTTATAAGTGACGTG 58.788 37.037 0.00 0.00 0.00 4.49
3241 4383 7.922278 TGTCTGTAGTTTTGTTATAAGTGACGT 59.078 33.333 0.00 0.00 0.00 4.34
3242 4384 8.289440 TGTCTGTAGTTTTGTTATAAGTGACG 57.711 34.615 0.00 0.00 0.00 4.35
3253 4395 9.772973 TGTTGTAGAATATGTCTGTAGTTTTGT 57.227 29.630 0.00 0.00 37.12 2.83
3255 4397 9.436957 CCTGTTGTAGAATATGTCTGTAGTTTT 57.563 33.333 0.00 0.00 37.12 2.43
3256 4398 8.041323 CCCTGTTGTAGAATATGTCTGTAGTTT 58.959 37.037 0.00 0.00 37.12 2.66
3257 4399 7.180408 ACCCTGTTGTAGAATATGTCTGTAGTT 59.820 37.037 0.00 0.00 37.12 2.24
3258 4400 6.668283 ACCCTGTTGTAGAATATGTCTGTAGT 59.332 38.462 0.00 0.00 37.12 2.73
3259 4401 6.980978 CACCCTGTTGTAGAATATGTCTGTAG 59.019 42.308 0.00 0.00 37.12 2.74
3260 4402 6.439375 ACACCCTGTTGTAGAATATGTCTGTA 59.561 38.462 0.00 0.00 37.12 2.74
3261 4403 5.248477 ACACCCTGTTGTAGAATATGTCTGT 59.752 40.000 0.00 0.00 37.12 3.41
3262 4404 5.734720 ACACCCTGTTGTAGAATATGTCTG 58.265 41.667 0.00 0.00 37.12 3.51
3263 4405 6.374417 AACACCCTGTTGTAGAATATGTCT 57.626 37.500 0.00 0.00 39.45 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.