Multiple sequence alignment - TraesCS3D01G463800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G463800 chr3D 100.000 3551 0 0 1 3551 567858244 567854694 0.000000e+00 6558.0
1 TraesCS3D01G463800 chr3D 93.908 1264 69 8 673 1931 569378682 569377422 0.000000e+00 1901.0
2 TraesCS3D01G463800 chr3D 98.219 842 14 1 1924 2764 569376676 569375835 0.000000e+00 1471.0
3 TraesCS3D01G463800 chr3D 89.209 556 23 15 94 634 567859196 567859729 0.000000e+00 660.0
4 TraesCS3D01G463800 chr3D 89.573 422 27 10 70 478 542406227 542406644 1.460000e-143 520.0
5 TraesCS3D01G463800 chr3D 87.121 396 35 7 94 478 542405238 542404848 5.440000e-118 435.0
6 TraesCS3D01G463800 chr3D 98.551 69 1 0 1 69 542406182 542406250 4.810000e-24 122.0
7 TraesCS3D01G463800 chr7A 84.025 964 138 14 983 1938 7833067 7834022 0.000000e+00 913.0
8 TraesCS3D01G463800 chr7A 86.146 397 39 9 96 478 6618816 6619210 7.090000e-112 414.0
9 TraesCS3D01G463800 chr7A 81.461 178 30 3 2228 2404 7834147 7834322 3.700000e-30 143.0
10 TraesCS3D01G463800 chr7A 85.075 67 10 0 2338 2404 7834325 7834391 6.360000e-08 69.4
11 TraesCS3D01G463800 chr7D 81.256 1019 185 3 1474 2487 7292929 7291912 0.000000e+00 819.0
12 TraesCS3D01G463800 chr7D 95.395 152 6 1 2774 2925 555547813 555547663 1.270000e-59 241.0
13 TraesCS3D01G463800 chr7D 95.302 149 6 1 2774 2922 555561834 555561687 5.930000e-58 235.0
14 TraesCS3D01G463800 chr7D 93.407 91 3 3 70 158 515399365 515399454 8.000000e-27 132.0
15 TraesCS3D01G463800 chr7D 98.551 69 1 0 1 69 515399320 515399388 4.810000e-24 122.0
16 TraesCS3D01G463800 chr3A 81.789 626 83 12 2926 3548 702951437 702952034 2.460000e-136 496.0
17 TraesCS3D01G463800 chr3A 81.837 490 52 17 1 478 600246760 600247224 9.310000e-101 377.0
18 TraesCS3D01G463800 chr3A 83.465 127 21 0 2924 3050 702918466 702918592 6.230000e-23 119.0
19 TraesCS3D01G463800 chr6D 89.974 389 25 9 70 447 418277979 418278364 1.150000e-134 490.0
20 TraesCS3D01G463800 chr6D 95.302 149 7 0 2774 2922 451102024 451102172 1.650000e-58 237.0
21 TraesCS3D01G463800 chr6D 98.551 69 1 0 1 69 418277934 418278002 4.810000e-24 122.0
22 TraesCS3D01G463800 chr4A 88.235 408 42 4 70 474 699008752 699008348 1.920000e-132 483.0
23 TraesCS3D01G463800 chr4A 92.667 150 9 2 2774 2922 602800205 602800057 7.720000e-52 215.0
24 TraesCS3D01G463800 chr4A 98.551 69 1 0 1 69 600691009 600691077 4.810000e-24 122.0
25 TraesCS3D01G463800 chr4A 81.098 164 16 8 70 220 600691054 600691215 2.240000e-22 117.0
26 TraesCS3D01G463800 chr2D 86.928 459 23 9 1 447 5383572 5383139 6.890000e-132 481.0
27 TraesCS3D01G463800 chr5A 87.071 379 35 8 102 478 649501399 649501033 1.970000e-112 416.0
28 TraesCS3D01G463800 chr5A 73.064 594 130 15 2961 3548 401316281 401316850 2.180000e-42 183.0
29 TraesCS3D01G463800 chr4B 87.131 373 36 8 116 478 64816449 64816079 2.550000e-111 412.0
30 TraesCS3D01G463800 chr4B 82.172 488 49 20 1 476 458002089 458002550 5.560000e-103 385.0
31 TraesCS3D01G463800 chr4B 88.272 324 32 4 159 478 65141030 65140709 2.000000e-102 383.0
32 TraesCS3D01G463800 chrUn 95.686 255 11 0 377 631 200353383 200353129 9.170000e-111 411.0
33 TraesCS3D01G463800 chrUn 95.294 255 12 0 377 631 200376345 200376091 4.270000e-109 405.0
34 TraesCS3D01G463800 chrUn 95.294 255 12 0 377 631 200380379 200380125 4.270000e-109 405.0
35 TraesCS3D01G463800 chrUn 95.294 255 12 0 377 631 352547520 352547266 4.270000e-109 405.0
36 TraesCS3D01G463800 chrUn 95.294 255 12 0 377 631 366439689 366439943 4.270000e-109 405.0
37 TraesCS3D01G463800 chrUn 95.294 255 12 0 377 631 380594942 380595196 4.270000e-109 405.0
38 TraesCS3D01G463800 chrUn 92.667 150 9 2 2774 2922 134250004 134250152 7.720000e-52 215.0
39 TraesCS3D01G463800 chr5D 95.686 255 11 0 377 631 399195444 399195190 9.170000e-111 411.0
40 TraesCS3D01G463800 chr5D 95.686 255 10 1 377 631 399196656 399196403 3.300000e-110 409.0
41 TraesCS3D01G463800 chr5D 85.572 402 38 16 91 478 21671523 21671918 1.540000e-108 403.0
42 TraesCS3D01G463800 chr5D 72.610 544 122 11 2961 3500 297738246 297737726 1.710000e-33 154.0
43 TraesCS3D01G463800 chr5B 82.041 490 51 17 1 478 141900852 141901316 2.000000e-102 383.0
44 TraesCS3D01G463800 chr5B 72.483 596 137 13 2961 3551 338482596 338482023 2.190000e-37 167.0
45 TraesCS3D01G463800 chr7B 81.109 487 48 19 1 478 61837096 61837547 2.030000e-92 350.0
46 TraesCS3D01G463800 chr7B 95.652 69 3 0 1 69 201533865 201533933 1.040000e-20 111.0
47 TraesCS3D01G463800 chr2B 96.644 149 5 0 2774 2922 768790755 768790607 7.610000e-62 248.0
48 TraesCS3D01G463800 chr2B 92.617 149 7 1 2774 2922 768778887 768778743 9.990000e-51 211.0
49 TraesCS3D01G463800 chr4D 95.302 149 6 1 2774 2922 427020910 427021057 5.930000e-58 235.0
50 TraesCS3D01G463800 chr6A 92.617 149 9 2 2774 2922 615498835 615498689 2.780000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G463800 chr3D 567854694 567858244 3550 True 6558.000000 6558 100.000000 1 3551 1 chr3D.!!$R2 3550
1 TraesCS3D01G463800 chr3D 569375835 569378682 2847 True 1686.000000 1901 96.063500 673 2764 2 chr3D.!!$R3 2091
2 TraesCS3D01G463800 chr3D 567859196 567859729 533 False 660.000000 660 89.209000 94 634 1 chr3D.!!$F1 540
3 TraesCS3D01G463800 chr7A 7833067 7834391 1324 False 375.133333 913 83.520333 983 2404 3 chr7A.!!$F2 1421
4 TraesCS3D01G463800 chr7D 7291912 7292929 1017 True 819.000000 819 81.256000 1474 2487 1 chr7D.!!$R1 1013
5 TraesCS3D01G463800 chr3A 702951437 702952034 597 False 496.000000 496 81.789000 2926 3548 1 chr3A.!!$F3 622
6 TraesCS3D01G463800 chrUn 200376091 200380379 4288 True 405.000000 405 95.294000 377 631 2 chrUn.!!$R3 254
7 TraesCS3D01G463800 chr5D 399195190 399196656 1466 True 410.000000 411 95.686000 377 631 2 chr5D.!!$R2 254

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.034059 GCTCACGGGGAGGATATGTG 59.966 60.0 9.71 0.0 44.22 3.21 F
35 36 0.034059 CTCACGGGGAGGATATGTGC 59.966 60.0 0.00 0.0 40.13 4.57 F
179 191 0.114954 AAAGGGAAGGCCTGCATTCA 59.885 50.0 14.44 0.0 38.33 2.57 F
490 4542 0.175073 GTCAGATTCGGGGTTAGCGT 59.825 55.0 0.00 0.0 0.00 5.07 F
1605 5661 0.796312 CAACCCTCGGAAACATCACG 59.204 55.0 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1395 5451 0.179134 CGCTTAGGTCGAGGACTTGG 60.179 60.000 0.00 0.0 32.47 3.61 R
1563 5619 0.533755 GGATGATCCCGGTGAGCTTG 60.534 60.000 0.00 0.0 0.00 4.01 R
1584 5640 0.768622 TGATGTTTCCGAGGGTTGGT 59.231 50.000 0.00 0.0 0.00 3.67 R
2329 7142 1.377202 GCTGGCCAAGGAACGATGA 60.377 57.895 7.01 0.0 0.00 2.92 R
2862 7819 0.041312 CGCCGTGCATGTTTATAGGC 60.041 55.000 4.96 0.0 39.68 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.628989 TGGATACAGGCTCACGGG 58.371 61.111 0.00 0.00 46.17 5.28
24 25 2.063979 TGGATACAGGCTCACGGGG 61.064 63.158 0.00 0.00 46.17 5.73
25 26 1.760875 GGATACAGGCTCACGGGGA 60.761 63.158 0.00 0.00 0.00 4.81
26 27 1.742768 GATACAGGCTCACGGGGAG 59.257 63.158 1.99 1.99 46.93 4.30
27 28 1.749334 GATACAGGCTCACGGGGAGG 61.749 65.000 9.71 0.00 44.22 4.30
28 29 2.238319 ATACAGGCTCACGGGGAGGA 62.238 60.000 9.71 0.00 44.22 3.71
29 30 2.238319 TACAGGCTCACGGGGAGGAT 62.238 60.000 9.71 0.00 44.22 3.24
30 31 1.457643 CAGGCTCACGGGGAGGATA 60.458 63.158 9.71 0.00 44.22 2.59
31 32 0.833834 CAGGCTCACGGGGAGGATAT 60.834 60.000 9.71 0.00 44.22 1.63
32 33 0.833834 AGGCTCACGGGGAGGATATG 60.834 60.000 9.71 0.00 44.22 1.78
33 34 1.122019 GGCTCACGGGGAGGATATGT 61.122 60.000 9.71 0.00 44.22 2.29
34 35 0.034059 GCTCACGGGGAGGATATGTG 59.966 60.000 9.71 0.00 44.22 3.21
35 36 0.034059 CTCACGGGGAGGATATGTGC 59.966 60.000 0.00 0.00 40.13 4.57
36 37 0.398522 TCACGGGGAGGATATGTGCT 60.399 55.000 0.00 0.00 0.00 4.40
37 38 0.250038 CACGGGGAGGATATGTGCTG 60.250 60.000 0.00 0.00 0.00 4.41
38 39 1.302033 CGGGGAGGATATGTGCTGC 60.302 63.158 0.00 0.00 33.32 5.25
39 40 1.302033 GGGGAGGATATGTGCTGCG 60.302 63.158 0.00 0.00 34.93 5.18
40 41 1.447643 GGGAGGATATGTGCTGCGT 59.552 57.895 0.00 0.00 34.93 5.24
41 42 0.679505 GGGAGGATATGTGCTGCGTA 59.320 55.000 0.00 0.00 34.93 4.42
42 43 1.276421 GGGAGGATATGTGCTGCGTAT 59.724 52.381 0.00 0.00 34.93 3.06
43 44 2.611518 GGAGGATATGTGCTGCGTATC 58.388 52.381 10.58 10.58 42.54 2.24
48 49 3.588955 GATATGTGCTGCGTATCCATGA 58.411 45.455 0.00 0.00 39.19 3.07
49 50 2.330440 ATGTGCTGCGTATCCATGAA 57.670 45.000 0.00 0.00 0.00 2.57
50 51 1.655484 TGTGCTGCGTATCCATGAAG 58.345 50.000 0.00 0.00 0.00 3.02
51 52 1.206849 TGTGCTGCGTATCCATGAAGA 59.793 47.619 0.00 0.00 0.00 2.87
52 53 2.279741 GTGCTGCGTATCCATGAAGAA 58.720 47.619 0.00 0.00 0.00 2.52
53 54 2.030946 GTGCTGCGTATCCATGAAGAAC 59.969 50.000 0.00 0.00 0.00 3.01
54 55 2.093500 TGCTGCGTATCCATGAAGAACT 60.093 45.455 0.00 0.00 0.00 3.01
55 56 3.132111 TGCTGCGTATCCATGAAGAACTA 59.868 43.478 0.00 0.00 0.00 2.24
56 57 4.119862 GCTGCGTATCCATGAAGAACTAA 58.880 43.478 0.00 0.00 0.00 2.24
57 58 4.570772 GCTGCGTATCCATGAAGAACTAAA 59.429 41.667 0.00 0.00 0.00 1.85
58 59 5.277058 GCTGCGTATCCATGAAGAACTAAAG 60.277 44.000 0.00 0.00 0.00 1.85
59 60 5.972935 TGCGTATCCATGAAGAACTAAAGA 58.027 37.500 0.00 0.00 0.00 2.52
60 61 6.403049 TGCGTATCCATGAAGAACTAAAGAA 58.597 36.000 0.00 0.00 0.00 2.52
61 62 7.047891 TGCGTATCCATGAAGAACTAAAGAAT 58.952 34.615 0.00 0.00 0.00 2.40
62 63 8.201464 TGCGTATCCATGAAGAACTAAAGAATA 58.799 33.333 0.00 0.00 0.00 1.75
63 64 9.042008 GCGTATCCATGAAGAACTAAAGAATAA 57.958 33.333 0.00 0.00 0.00 1.40
107 108 0.523335 GAAATGCGCGCCAGTTAAGG 60.523 55.000 30.77 0.00 30.84 2.69
108 109 1.241315 AAATGCGCGCCAGTTAAGGT 61.241 50.000 30.77 2.89 28.48 3.50
109 110 0.391927 AATGCGCGCCAGTTAAGGTA 60.392 50.000 30.77 5.62 0.00 3.08
110 111 0.179056 ATGCGCGCCAGTTAAGGTAT 60.179 50.000 30.77 8.15 0.00 2.73
111 112 1.087202 TGCGCGCCAGTTAAGGTATG 61.087 55.000 30.77 0.00 0.00 2.39
114 115 2.004017 CGCGCCAGTTAAGGTATGAAA 58.996 47.619 0.00 0.00 0.00 2.69
157 160 4.335647 CCGGCCCAGTGCTTCAGT 62.336 66.667 0.00 0.00 40.92 3.41
159 162 1.448540 CGGCCCAGTGCTTCAGTAG 60.449 63.158 0.00 0.00 40.92 2.57
179 191 0.114954 AAAGGGAAGGCCTGCATTCA 59.885 50.000 14.44 0.00 38.33 2.57
182 194 1.197812 GGGAAGGCCTGCATTCAAAT 58.802 50.000 14.44 0.00 38.33 2.32
218 230 3.408020 TCGTGGTTAGCGCGTTGC 61.408 61.111 16.65 0.00 46.98 4.17
237 249 3.760035 CCCGTGGACTCCAGGTCG 61.760 72.222 15.17 8.04 45.35 4.79
248 260 1.006805 CCAGGTCGCAGGATCGATC 60.007 63.158 17.36 17.36 40.84 3.69
265 277 4.875713 CCCCGCCAGCGCCTTATT 62.876 66.667 2.29 0.00 38.24 1.40
266 278 2.828549 CCCGCCAGCGCCTTATTT 60.829 61.111 2.29 0.00 38.24 1.40
268 280 1.510844 CCGCCAGCGCCTTATTTTT 59.489 52.632 2.29 0.00 38.24 1.94
269 281 0.525455 CCGCCAGCGCCTTATTTTTC 60.525 55.000 2.29 0.00 38.24 2.29
270 282 0.861450 CGCCAGCGCCTTATTTTTCG 60.861 55.000 2.29 0.00 0.00 3.46
337 351 2.164219 CCAGATTCGGTGGTGGAAATTG 59.836 50.000 0.00 0.00 31.04 2.32
366 381 5.718724 AAAAAGAAAGCCTCTCATGAAGG 57.281 39.130 15.63 15.63 31.02 3.46
409 3655 5.971763 TGGGCATTTTTGTGATTACATACC 58.028 37.500 0.00 0.00 36.53 2.73
490 4542 0.175073 GTCAGATTCGGGGTTAGCGT 59.825 55.000 0.00 0.00 0.00 5.07
585 4638 6.293244 GCACAAAATCGTAGAGTGGTAGTTTT 60.293 38.462 0.00 0.00 43.63 2.43
631 4684 7.778853 TGTGGTAGTTTTTGGTTAAATACTCCA 59.221 33.333 0.00 0.00 38.47 3.86
633 4686 9.369672 TGGTAGTTTTTGGTTAAATACTCCATT 57.630 29.630 0.00 0.00 38.47 3.16
671 4724 9.772973 AAGTTAGTAAATCAGTCATGTTACACA 57.227 29.630 0.00 0.00 0.00 3.72
672 4725 9.772973 AGTTAGTAAATCAGTCATGTTACACAA 57.227 29.630 0.00 0.00 0.00 3.33
782 4835 3.360867 ACTCCACACACAAAATTCACCA 58.639 40.909 0.00 0.00 0.00 4.17
783 4836 3.381272 ACTCCACACACAAAATTCACCAG 59.619 43.478 0.00 0.00 0.00 4.00
891 4945 7.485810 TGTAACAAAAGGGAAAGCTTCTTTAC 58.514 34.615 10.93 7.19 31.39 2.01
898 4952 9.595823 AAAAGGGAAAGCTTCTTTACTAAAAAC 57.404 29.630 10.93 0.00 31.39 2.43
916 4970 5.813080 AAAACAAGTAGATAATGGGCGAC 57.187 39.130 0.00 0.00 0.00 5.19
921 4975 6.588204 ACAAGTAGATAATGGGCGACAATAA 58.412 36.000 0.00 0.00 0.00 1.40
922 4976 7.224297 ACAAGTAGATAATGGGCGACAATAAT 58.776 34.615 0.00 0.00 0.00 1.28
926 4981 2.869233 AATGGGCGACAATAATGCAC 57.131 45.000 0.00 0.00 0.00 4.57
927 4982 2.057137 ATGGGCGACAATAATGCACT 57.943 45.000 0.00 0.00 31.92 4.40
937 4992 6.373779 CGACAATAATGCACTTGAACTCTTT 58.626 36.000 11.29 0.00 0.00 2.52
947 5002 5.605534 CACTTGAACTCTTTCCTCTTGAGA 58.394 41.667 0.00 0.00 0.00 3.27
979 5035 8.281893 GTGATGCATTTAAAAGAGCTCTATCTC 58.718 37.037 18.59 9.74 0.00 2.75
1026 5082 2.803817 AACGTGTCCCAAGCGACCT 61.804 57.895 0.00 0.00 31.35 3.85
1059 5115 4.499188 GGCGTGCTCATACTATTGACACTA 60.499 45.833 0.00 0.00 31.37 2.74
1071 5127 4.530710 ATTGACACTACCGTTGCTTCTA 57.469 40.909 0.00 0.00 0.00 2.10
1157 5213 4.335874 GCAAGCTTTCAGACATGAGATCAT 59.664 41.667 0.00 0.00 36.61 2.45
1203 5259 2.756400 TGGAACTCCAGCGCCAAT 59.244 55.556 2.29 0.00 42.01 3.16
1389 5445 1.134461 CCTCCTCTGAACCATCTGCAG 60.134 57.143 7.63 7.63 0.00 4.41
1395 5451 3.668447 TCTGAACCATCTGCAGAAACTC 58.332 45.455 22.50 14.84 35.87 3.01
1503 5559 5.297029 CCTAGCTAAAAACATCTTGGTAGGC 59.703 44.000 0.00 0.00 38.33 3.93
1563 5619 4.682860 TCACATTTACGACTTTCTCGGAAC 59.317 41.667 0.00 0.00 45.32 3.62
1566 5622 5.176958 ACATTTACGACTTTCTCGGAACAAG 59.823 40.000 0.00 0.00 45.32 3.16
1605 5661 0.796312 CAACCCTCGGAAACATCACG 59.204 55.000 0.00 0.00 0.00 4.35
1688 5744 5.886609 TGGGAAACTGACAAATATGAGGAA 58.113 37.500 0.00 0.00 0.00 3.36
1689 5745 6.493166 TGGGAAACTGACAAATATGAGGAAT 58.507 36.000 0.00 0.00 0.00 3.01
1690 5746 6.377996 TGGGAAACTGACAAATATGAGGAATG 59.622 38.462 0.00 0.00 0.00 2.67
1765 5821 9.490379 TCAACCTTTCTAAATCTCTTCAAGTAC 57.510 33.333 0.00 0.00 0.00 2.73
1769 5829 9.308318 CCTTTCTAAATCTCTTCAAGTACTAGC 57.692 37.037 0.00 0.00 0.00 3.42
1844 5904 3.032265 ACCAAACCTCCAAGAGCTTTT 57.968 42.857 0.00 0.00 0.00 2.27
1996 6809 5.553123 ACATGTATGTGTTAAACCTTCGGA 58.447 37.500 0.00 0.00 40.03 4.55
2254 7067 7.371936 TGGCAATAACAATTTAACTGGTACAC 58.628 34.615 0.00 0.00 0.00 2.90
2329 7142 2.530460 TAGCTTCATTGGGCCATTGT 57.470 45.000 23.61 10.45 0.00 2.71
2355 7311 0.324943 TCCTTGGCCAGCTTACTCAC 59.675 55.000 5.11 0.00 0.00 3.51
2747 7704 7.826252 GGCATATTGGACACTCATACAAGATAT 59.174 37.037 0.00 0.00 0.00 1.63
2755 7712 9.019656 GGACACTCATACAAGATATGATAGAGT 57.980 37.037 0.00 0.00 37.26 3.24
2811 7768 8.706322 ACTCTTATCTCTATCTTTCTTCTCCC 57.294 38.462 0.00 0.00 0.00 4.30
2812 7769 8.511126 ACTCTTATCTCTATCTTTCTTCTCCCT 58.489 37.037 0.00 0.00 0.00 4.20
2813 7770 8.934023 TCTTATCTCTATCTTTCTTCTCCCTC 57.066 38.462 0.00 0.00 0.00 4.30
2814 7771 8.506921 TCTTATCTCTATCTTTCTTCTCCCTCA 58.493 37.037 0.00 0.00 0.00 3.86
2815 7772 9.142014 CTTATCTCTATCTTTCTTCTCCCTCAA 57.858 37.037 0.00 0.00 0.00 3.02
2816 7773 7.601705 ATCTCTATCTTTCTTCTCCCTCAAG 57.398 40.000 0.00 0.00 0.00 3.02
2817 7774 6.498538 TCTCTATCTTTCTTCTCCCTCAAGT 58.501 40.000 0.00 0.00 0.00 3.16
2818 7775 6.957020 TCTCTATCTTTCTTCTCCCTCAAGTT 59.043 38.462 0.00 0.00 0.00 2.66
2819 7776 6.940739 TCTATCTTTCTTCTCCCTCAAGTTG 58.059 40.000 0.00 0.00 0.00 3.16
2820 7777 5.574970 ATCTTTCTTCTCCCTCAAGTTGT 57.425 39.130 2.11 0.00 0.00 3.32
2821 7778 6.688073 ATCTTTCTTCTCCCTCAAGTTGTA 57.312 37.500 2.11 0.00 0.00 2.41
2822 7779 6.494666 TCTTTCTTCTCCCTCAAGTTGTAA 57.505 37.500 2.11 0.00 0.00 2.41
2823 7780 7.079451 TCTTTCTTCTCCCTCAAGTTGTAAT 57.921 36.000 2.11 0.00 0.00 1.89
2824 7781 7.162082 TCTTTCTTCTCCCTCAAGTTGTAATC 58.838 38.462 2.11 0.00 0.00 1.75
2825 7782 6.688073 TTCTTCTCCCTCAAGTTGTAATCT 57.312 37.500 2.11 0.00 0.00 2.40
2826 7783 6.287589 TCTTCTCCCTCAAGTTGTAATCTC 57.712 41.667 2.11 0.00 0.00 2.75
2827 7784 5.187967 TCTTCTCCCTCAAGTTGTAATCTCC 59.812 44.000 2.11 0.00 0.00 3.71
2828 7785 3.775316 TCTCCCTCAAGTTGTAATCTCCC 59.225 47.826 2.11 0.00 0.00 4.30
2829 7786 3.519510 CTCCCTCAAGTTGTAATCTCCCA 59.480 47.826 2.11 0.00 0.00 4.37
2830 7787 3.913799 TCCCTCAAGTTGTAATCTCCCAA 59.086 43.478 2.11 0.00 0.00 4.12
2831 7788 4.010349 CCCTCAAGTTGTAATCTCCCAAC 58.990 47.826 2.11 0.00 40.94 3.77
2838 7795 5.485662 GTTGTAATCTCCCAACTGTATGC 57.514 43.478 0.00 0.00 38.30 3.14
2839 7796 3.792401 TGTAATCTCCCAACTGTATGCG 58.208 45.455 0.00 0.00 0.00 4.73
2840 7797 1.668419 AATCTCCCAACTGTATGCGC 58.332 50.000 0.00 0.00 0.00 6.09
2841 7798 0.833287 ATCTCCCAACTGTATGCGCT 59.167 50.000 9.73 0.00 0.00 5.92
2842 7799 1.480789 TCTCCCAACTGTATGCGCTA 58.519 50.000 9.73 0.00 0.00 4.26
2843 7800 2.039418 TCTCCCAACTGTATGCGCTAT 58.961 47.619 9.73 3.00 0.00 2.97
2844 7801 2.035961 TCTCCCAACTGTATGCGCTATC 59.964 50.000 9.73 0.00 0.00 2.08
2845 7802 1.070134 TCCCAACTGTATGCGCTATCC 59.930 52.381 9.73 0.00 0.00 2.59
2846 7803 1.202639 CCCAACTGTATGCGCTATCCA 60.203 52.381 9.73 0.00 0.00 3.41
2847 7804 2.138320 CCAACTGTATGCGCTATCCAG 58.862 52.381 9.73 11.82 0.00 3.86
2848 7805 2.138320 CAACTGTATGCGCTATCCAGG 58.862 52.381 9.73 0.00 0.00 4.45
2849 7806 0.681733 ACTGTATGCGCTATCCAGGG 59.318 55.000 9.73 0.00 37.77 4.45
2850 7807 0.969149 CTGTATGCGCTATCCAGGGA 59.031 55.000 9.73 0.00 36.87 4.20
2851 7808 0.969149 TGTATGCGCTATCCAGGGAG 59.031 55.000 9.73 0.00 36.87 4.30
2852 7809 0.247736 GTATGCGCTATCCAGGGAGG 59.752 60.000 9.73 0.00 36.87 4.30
2853 7810 0.178932 TATGCGCTATCCAGGGAGGT 60.179 55.000 9.73 0.00 36.87 3.85
2854 7811 1.762522 ATGCGCTATCCAGGGAGGTG 61.763 60.000 9.73 0.00 36.87 4.00
2855 7812 2.423446 CGCTATCCAGGGAGGTGC 59.577 66.667 0.00 0.00 36.87 5.01
2856 7813 2.423446 GCTATCCAGGGAGGTGCG 59.577 66.667 0.00 0.00 39.02 5.34
2857 7814 2.423446 CTATCCAGGGAGGTGCGC 59.577 66.667 0.00 0.00 39.02 6.09
2858 7815 3.161450 TATCCAGGGAGGTGCGCC 61.161 66.667 8.71 8.71 39.02 6.53
2868 7825 3.556306 GGTGCGCCCCTGCCTATA 61.556 66.667 4.45 0.00 0.00 1.31
2869 7826 2.508928 GTGCGCCCCTGCCTATAA 59.491 61.111 4.18 0.00 0.00 0.98
2870 7827 1.153046 GTGCGCCCCTGCCTATAAA 60.153 57.895 4.18 0.00 0.00 1.40
2871 7828 1.153046 TGCGCCCCTGCCTATAAAC 60.153 57.895 4.18 0.00 0.00 2.01
2872 7829 1.153046 GCGCCCCTGCCTATAAACA 60.153 57.895 0.00 0.00 0.00 2.83
2873 7830 0.537371 GCGCCCCTGCCTATAAACAT 60.537 55.000 0.00 0.00 0.00 2.71
2874 7831 1.238439 CGCCCCTGCCTATAAACATG 58.762 55.000 0.00 0.00 0.00 3.21
2875 7832 0.961753 GCCCCTGCCTATAAACATGC 59.038 55.000 0.00 0.00 0.00 4.06
2876 7833 1.753847 GCCCCTGCCTATAAACATGCA 60.754 52.381 0.00 0.00 0.00 3.96
2877 7834 1.956477 CCCCTGCCTATAAACATGCAC 59.044 52.381 0.00 0.00 0.00 4.57
2878 7835 1.603802 CCCTGCCTATAAACATGCACG 59.396 52.381 0.00 0.00 0.00 5.34
2879 7836 1.603802 CCTGCCTATAAACATGCACGG 59.396 52.381 0.00 0.00 0.00 4.94
2880 7837 1.002468 CTGCCTATAAACATGCACGGC 60.002 52.381 0.00 0.00 36.64 5.68
2881 7838 0.041312 GCCTATAAACATGCACGGCG 60.041 55.000 4.80 4.80 0.00 6.46
2882 7839 1.295792 CCTATAAACATGCACGGCGT 58.704 50.000 6.77 6.77 0.00 5.68
2883 7840 1.260561 CCTATAAACATGCACGGCGTC 59.739 52.381 10.85 6.01 0.00 5.19
2884 7841 1.260561 CTATAAACATGCACGGCGTCC 59.739 52.381 10.85 0.00 0.00 4.79
2885 7842 1.373590 ATAAACATGCACGGCGTCCC 61.374 55.000 10.85 4.69 0.00 4.46
2893 7850 4.816984 ACGGCGTCCCCTCTCGAT 62.817 66.667 6.77 0.00 0.00 3.59
2894 7851 4.271816 CGGCGTCCCCTCTCGATG 62.272 72.222 0.00 0.00 0.00 3.84
2895 7852 2.833582 GGCGTCCCCTCTCGATGA 60.834 66.667 0.00 0.00 0.00 2.92
2896 7853 2.725008 GCGTCCCCTCTCGATGAG 59.275 66.667 5.27 5.27 42.30 2.90
2907 7864 4.974368 CTCTCGATGAGGTAAGACACTT 57.026 45.455 4.52 0.00 39.08 3.16
2908 7865 5.317733 CTCTCGATGAGGTAAGACACTTT 57.682 43.478 4.52 0.00 39.08 2.66
2909 7866 5.312120 TCTCGATGAGGTAAGACACTTTC 57.688 43.478 0.00 0.00 0.00 2.62
2910 7867 4.092771 TCGATGAGGTAAGACACTTTCG 57.907 45.455 0.00 0.00 0.00 3.46
2911 7868 2.599082 CGATGAGGTAAGACACTTTCGC 59.401 50.000 0.00 0.00 0.00 4.70
2912 7869 2.450609 TGAGGTAAGACACTTTCGCC 57.549 50.000 0.00 0.00 0.00 5.54
2913 7870 1.968493 TGAGGTAAGACACTTTCGCCT 59.032 47.619 0.00 0.00 0.00 5.52
2914 7871 3.159472 TGAGGTAAGACACTTTCGCCTA 58.841 45.455 0.00 0.00 0.00 3.93
2915 7872 3.575256 TGAGGTAAGACACTTTCGCCTAA 59.425 43.478 0.00 0.00 0.00 2.69
2916 7873 3.922910 AGGTAAGACACTTTCGCCTAAC 58.077 45.455 0.00 0.00 0.00 2.34
2917 7874 2.665052 GGTAAGACACTTTCGCCTAACG 59.335 50.000 0.00 0.00 45.62 3.18
2918 7875 1.145803 AAGACACTTTCGCCTAACGC 58.854 50.000 0.00 0.00 43.23 4.84
2919 7876 0.032952 AGACACTTTCGCCTAACGCA 59.967 50.000 0.00 0.00 43.23 5.24
2920 7877 0.163146 GACACTTTCGCCTAACGCAC 59.837 55.000 0.00 0.00 43.23 5.34
2921 7878 0.531090 ACACTTTCGCCTAACGCACA 60.531 50.000 0.00 0.00 43.23 4.57
2922 7879 0.163788 CACTTTCGCCTAACGCACAG 59.836 55.000 0.00 0.00 43.23 3.66
2923 7880 0.949105 ACTTTCGCCTAACGCACAGG 60.949 55.000 0.00 0.00 43.23 4.00
2924 7881 0.669318 CTTTCGCCTAACGCACAGGA 60.669 55.000 1.91 0.00 43.23 3.86
2930 7887 1.943968 GCCTAACGCACAGGATTGACA 60.944 52.381 1.91 0.00 34.91 3.58
2933 7890 0.523072 AACGCACAGGATTGACATGC 59.477 50.000 0.00 0.00 33.22 4.06
2938 7895 0.251354 ACAGGATTGACATGCGAGCT 59.749 50.000 0.00 0.00 33.22 4.09
2939 7896 0.656259 CAGGATTGACATGCGAGCTG 59.344 55.000 0.00 0.00 0.00 4.24
2945 7902 1.742880 GACATGCGAGCTGCCTTGA 60.743 57.895 0.00 0.00 45.60 3.02
2946 7903 1.975363 GACATGCGAGCTGCCTTGAC 61.975 60.000 0.00 0.00 45.60 3.18
2947 7904 2.437359 ATGCGAGCTGCCTTGACC 60.437 61.111 0.00 0.00 45.60 4.02
2953 7910 3.123620 GCTGCCTTGACCGCTCAG 61.124 66.667 0.00 0.00 0.00 3.35
2963 7920 2.507992 CCGCTCAGGTGCTTCTCG 60.508 66.667 0.00 0.00 34.51 4.04
2978 7935 1.079127 CTCGGCGGTCCTCACAAAT 60.079 57.895 7.21 0.00 0.00 2.32
2996 7953 3.872459 AATTCATCCATGACCTCTCCC 57.128 47.619 0.00 0.00 36.36 4.30
3011 7968 1.134098 TCTCCCGAGGATCCAAAATGC 60.134 52.381 15.82 0.00 0.00 3.56
3016 7973 2.094675 CGAGGATCCAAAATGCTGGTT 58.905 47.619 15.82 0.00 37.74 3.67
3030 7987 3.879998 TGCTGGTTTATTATCGGCTCAA 58.120 40.909 0.00 0.00 34.19 3.02
3031 7988 3.876914 TGCTGGTTTATTATCGGCTCAAG 59.123 43.478 0.00 0.00 34.19 3.02
3033 7990 4.260784 GCTGGTTTATTATCGGCTCAAGTG 60.261 45.833 0.00 0.00 0.00 3.16
3034 7991 3.625764 TGGTTTATTATCGGCTCAAGTGC 59.374 43.478 0.00 0.00 0.00 4.40
3043 8000 0.392729 GGCTCAAGTGCAGCTCTCAT 60.393 55.000 0.00 0.00 37.05 2.90
3053 8010 2.288457 TGCAGCTCTCATACTATTCGCC 60.288 50.000 0.00 0.00 0.00 5.54
3055 8012 3.312828 CAGCTCTCATACTATTCGCCAC 58.687 50.000 0.00 0.00 0.00 5.01
3057 8014 2.610727 GCTCTCATACTATTCGCCACCC 60.611 54.545 0.00 0.00 0.00 4.61
3074 8031 3.036431 CCTGTTTGGGGTGAGGAAC 57.964 57.895 0.00 0.00 0.00 3.62
3076 8033 0.179029 CTGTTTGGGGTGAGGAACGT 60.179 55.000 0.00 0.00 0.00 3.99
3077 8034 0.464735 TGTTTGGGGTGAGGAACGTG 60.465 55.000 0.00 0.00 0.00 4.49
3078 8035 1.527380 TTTGGGGTGAGGAACGTGC 60.527 57.895 0.00 0.00 0.00 5.34
3079 8036 1.990160 TTTGGGGTGAGGAACGTGCT 61.990 55.000 0.00 0.00 0.00 4.40
3086 8043 0.037326 TGAGGAACGTGCTGTCCATC 60.037 55.000 6.77 2.64 0.00 3.51
3096 8053 0.392461 GCTGTCCATCCCGCTTGTAA 60.392 55.000 0.00 0.00 0.00 2.41
3098 8055 0.251916 TGTCCATCCCGCTTGTAAGG 59.748 55.000 0.00 0.00 0.00 2.69
3104 8061 1.005394 CCCGCTTGTAAGGTCGTGT 60.005 57.895 0.00 0.00 0.00 4.49
3105 8062 0.244450 CCCGCTTGTAAGGTCGTGTA 59.756 55.000 0.00 0.00 0.00 2.90
3116 8073 1.664321 GGTCGTGTACCCGCATCTCT 61.664 60.000 0.00 0.00 43.16 3.10
3121 8078 1.137086 GTGTACCCGCATCTCTGTGAT 59.863 52.381 0.00 0.00 34.71 3.06
3126 8083 1.579698 CCGCATCTCTGTGATTGAGG 58.420 55.000 0.00 0.00 34.71 3.86
3131 8088 3.493002 GCATCTCTGTGATTGAGGAGGAG 60.493 52.174 0.00 0.00 32.05 3.69
3134 8091 0.179936 CTGTGATTGAGGAGGAGCCC 59.820 60.000 0.00 0.00 37.37 5.19
3149 8106 1.347378 GAGCCCTCTTCCTGGATGATC 59.653 57.143 12.18 4.38 0.00 2.92
3152 8109 2.975075 CCCTCTTCCTGGATGATCTCT 58.025 52.381 12.18 0.00 0.00 3.10
3155 8112 4.225573 CCTCTTCCTGGATGATCTCTCTT 58.774 47.826 12.18 0.00 0.00 2.85
3162 8119 4.460382 CCTGGATGATCTCTCTTAGCTCTC 59.540 50.000 0.00 0.00 0.00 3.20
3163 8120 5.319453 CTGGATGATCTCTCTTAGCTCTCT 58.681 45.833 0.00 0.00 0.00 3.10
3164 8121 5.704354 TGGATGATCTCTCTTAGCTCTCTT 58.296 41.667 0.00 0.00 0.00 2.85
3165 8122 6.135454 TGGATGATCTCTCTTAGCTCTCTTT 58.865 40.000 0.00 0.00 0.00 2.52
3170 8127 4.877773 TCTCTCTTAGCTCTCTTTGGGAT 58.122 43.478 0.00 0.00 0.00 3.85
3173 8130 3.454082 CTCTTAGCTCTCTTTGGGATGGT 59.546 47.826 0.00 0.00 0.00 3.55
3179 8136 3.117888 GCTCTCTTTGGGATGGTCCATAA 60.118 47.826 3.72 0.00 38.64 1.90
3180 8137 4.628715 GCTCTCTTTGGGATGGTCCATAAA 60.629 45.833 3.72 1.22 38.64 1.40
3181 8138 5.699143 CTCTCTTTGGGATGGTCCATAAAT 58.301 41.667 3.72 0.00 38.64 1.40
3182 8139 5.694995 TCTCTTTGGGATGGTCCATAAATC 58.305 41.667 3.72 0.00 38.64 2.17
3185 8142 1.202879 TGGGATGGTCCATAAATCGGC 60.203 52.381 3.72 0.00 38.64 5.54
3217 8174 6.892310 AGAATCAAACTTTGCTTTGTCAAC 57.108 33.333 0.00 0.00 33.54 3.18
3219 8176 4.527509 TCAAACTTTGCTTTGTCAACCA 57.472 36.364 0.00 0.00 33.54 3.67
3232 8189 2.240160 TGTCAACCACACCCTGTTAGTT 59.760 45.455 0.00 0.00 0.00 2.24
3251 8208 7.386848 TGTTAGTTATCCAAAAGAGAAACTCGG 59.613 37.037 0.00 0.00 36.52 4.63
3252 8209 4.695928 AGTTATCCAAAAGAGAAACTCGGC 59.304 41.667 0.00 0.00 32.02 5.54
3255 8212 2.813754 TCCAAAAGAGAAACTCGGCATG 59.186 45.455 0.00 0.00 35.36 4.06
3258 8215 3.695830 AAAGAGAAACTCGGCATGGTA 57.304 42.857 0.00 0.00 35.36 3.25
3264 8221 3.252458 AGAAACTCGGCATGGTAAAACAC 59.748 43.478 0.00 0.00 0.00 3.32
3266 8223 2.423577 ACTCGGCATGGTAAAACACTC 58.576 47.619 0.00 0.00 0.00 3.51
3270 8227 2.487762 CGGCATGGTAAAACACTCACAT 59.512 45.455 0.00 0.00 0.00 3.21
3274 8231 4.726416 CATGGTAAAACACTCACATGCTC 58.274 43.478 0.00 0.00 30.78 4.26
3286 8243 2.672874 TCACATGCTCGCTACAAATGAC 59.327 45.455 0.00 0.00 0.00 3.06
3290 8247 4.023279 ACATGCTCGCTACAAATGACAAAA 60.023 37.500 0.00 0.00 0.00 2.44
3291 8248 4.764679 TGCTCGCTACAAATGACAAAAT 57.235 36.364 0.00 0.00 0.00 1.82
3293 8250 3.853671 GCTCGCTACAAATGACAAAATGG 59.146 43.478 0.00 0.00 0.00 3.16
3294 8251 4.615912 GCTCGCTACAAATGACAAAATGGT 60.616 41.667 0.00 0.00 0.00 3.55
3295 8252 5.446143 TCGCTACAAATGACAAAATGGTT 57.554 34.783 0.00 0.00 0.00 3.67
3296 8253 5.218885 TCGCTACAAATGACAAAATGGTTG 58.781 37.500 0.00 0.00 0.00 3.77
3297 8254 5.009110 TCGCTACAAATGACAAAATGGTTGA 59.991 36.000 0.00 0.00 0.00 3.18
3298 8255 5.689514 CGCTACAAATGACAAAATGGTTGAA 59.310 36.000 0.00 0.00 0.00 2.69
3299 8256 6.199908 CGCTACAAATGACAAAATGGTTGAAA 59.800 34.615 0.00 0.00 0.00 2.69
3300 8257 7.095691 CGCTACAAATGACAAAATGGTTGAAAT 60.096 33.333 0.00 0.00 0.00 2.17
3301 8258 8.011106 GCTACAAATGACAAAATGGTTGAAATG 58.989 33.333 0.00 0.00 0.00 2.32
3302 8259 7.862512 ACAAATGACAAAATGGTTGAAATGT 57.137 28.000 0.00 0.00 0.00 2.71
3303 8260 8.954950 ACAAATGACAAAATGGTTGAAATGTA 57.045 26.923 0.00 0.00 0.00 2.29
3304 8261 9.388506 ACAAATGACAAAATGGTTGAAATGTAA 57.611 25.926 0.00 0.00 0.00 2.41
3307 8264 9.612066 AATGACAAAATGGTTGAAATGTAAAGT 57.388 25.926 0.00 0.00 0.00 2.66
3309 8266 9.743057 TGACAAAATGGTTGAAATGTAAAGTAG 57.257 29.630 0.00 0.00 0.00 2.57
3310 8267 9.744468 GACAAAATGGTTGAAATGTAAAGTAGT 57.256 29.630 0.00 0.00 0.00 2.73
3362 8319 2.114616 CTGAGCTACAGTTCCCCAGAT 58.885 52.381 0.00 0.00 41.30 2.90
3369 8326 2.555664 ACAGTTCCCCAGATGTGAGAT 58.444 47.619 0.00 0.00 0.00 2.75
3371 8328 1.759445 AGTTCCCCAGATGTGAGATCG 59.241 52.381 0.00 0.00 0.00 3.69
3372 8329 1.757118 GTTCCCCAGATGTGAGATCGA 59.243 52.381 0.00 0.00 0.00 3.59
3380 8337 4.026228 CCAGATGTGAGATCGATTTCGTTG 60.026 45.833 10.98 5.17 40.80 4.10
3388 8345 5.289434 TGAGATCGATTTCGTTGATGAGTTG 59.711 40.000 10.98 0.00 40.80 3.16
3393 8350 5.062183 TCGATTTCGTTGATGAGTTGATCAC 59.938 40.000 0.00 0.00 39.76 3.06
3404 8361 1.002624 TTGATCACAACGCCTCCCC 60.003 57.895 0.00 0.00 0.00 4.81
3406 8363 4.096003 ATCACAACGCCTCCCCGG 62.096 66.667 0.00 0.00 0.00 5.73
3430 8387 1.546029 GGAAACAACCATCCTGCCTTC 59.454 52.381 0.00 0.00 32.75 3.46
3431 8388 2.519013 GAAACAACCATCCTGCCTTCT 58.481 47.619 0.00 0.00 0.00 2.85
3435 8392 1.867595 AACCATCCTGCCTTCTGGGG 61.868 60.000 0.00 0.00 35.12 4.96
3470 8427 2.893489 TCTCAGCTGCAAGAGAAGTGTA 59.107 45.455 18.44 0.21 37.91 2.90
3488 8445 8.568794 AGAAGTGTAAAATCTTTCCTAAACTGC 58.431 33.333 0.00 0.00 0.00 4.40
3506 8463 3.412363 TGCCTTGCATAAGCTCCAGCT 62.412 52.381 0.00 0.00 43.70 4.24
3525 8482 0.892755 TACCACCGCGAGTCTTTCAT 59.107 50.000 8.23 0.00 0.00 2.57
3548 8505 3.329114 GACATGCTCGTCGATGTCA 57.671 52.632 18.18 8.10 45.27 3.58
3549 8506 1.845266 GACATGCTCGTCGATGTCAT 58.155 50.000 18.18 9.73 45.27 3.06
3550 8507 3.000082 GACATGCTCGTCGATGTCATA 58.000 47.619 18.18 0.00 45.27 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.338337 CCGTGAGCCTGTATCCACTAG 59.662 57.143 0.00 0.00 0.00 2.57
3 4 1.399714 CCGTGAGCCTGTATCCACTA 58.600 55.000 0.00 0.00 0.00 2.74
5 6 1.144057 CCCGTGAGCCTGTATCCAC 59.856 63.158 0.00 0.00 0.00 4.02
6 7 2.063979 CCCCGTGAGCCTGTATCCA 61.064 63.158 0.00 0.00 0.00 3.41
7 8 1.749334 CTCCCCGTGAGCCTGTATCC 61.749 65.000 0.00 0.00 33.47 2.59
8 9 1.742768 CTCCCCGTGAGCCTGTATC 59.257 63.158 0.00 0.00 33.47 2.24
9 10 1.762460 CCTCCCCGTGAGCCTGTAT 60.762 63.158 0.00 0.00 39.98 2.29
10 11 2.238319 ATCCTCCCCGTGAGCCTGTA 62.238 60.000 0.00 0.00 39.98 2.74
11 12 2.238319 TATCCTCCCCGTGAGCCTGT 62.238 60.000 0.00 0.00 39.98 4.00
12 13 0.833834 ATATCCTCCCCGTGAGCCTG 60.834 60.000 0.00 0.00 39.98 4.85
13 14 0.833834 CATATCCTCCCCGTGAGCCT 60.834 60.000 0.00 0.00 39.98 4.58
14 15 1.122019 ACATATCCTCCCCGTGAGCC 61.122 60.000 0.00 0.00 39.98 4.70
15 16 0.034059 CACATATCCTCCCCGTGAGC 59.966 60.000 0.00 0.00 39.98 4.26
16 17 0.034059 GCACATATCCTCCCCGTGAG 59.966 60.000 0.00 0.00 41.07 3.51
17 18 0.398522 AGCACATATCCTCCCCGTGA 60.399 55.000 0.00 0.00 0.00 4.35
18 19 0.250038 CAGCACATATCCTCCCCGTG 60.250 60.000 0.00 0.00 0.00 4.94
19 20 2.044806 GCAGCACATATCCTCCCCGT 62.045 60.000 0.00 0.00 0.00 5.28
20 21 1.302033 GCAGCACATATCCTCCCCG 60.302 63.158 0.00 0.00 0.00 5.73
21 22 1.302033 CGCAGCACATATCCTCCCC 60.302 63.158 0.00 0.00 0.00 4.81
22 23 0.679505 TACGCAGCACATATCCTCCC 59.320 55.000 0.00 0.00 0.00 4.30
23 24 2.611518 GATACGCAGCACATATCCTCC 58.388 52.381 0.00 0.00 0.00 4.30
24 25 2.029020 TGGATACGCAGCACATATCCTC 60.029 50.000 20.48 4.38 42.89 3.71
25 26 1.970640 TGGATACGCAGCACATATCCT 59.029 47.619 20.48 0.00 42.89 3.24
26 27 2.455674 TGGATACGCAGCACATATCC 57.544 50.000 15.93 15.93 42.79 2.59
27 28 3.588955 TCATGGATACGCAGCACATATC 58.411 45.455 0.00 0.00 42.51 1.63
28 29 3.683365 TCATGGATACGCAGCACATAT 57.317 42.857 0.00 0.00 42.51 1.78
29 30 3.069443 TCTTCATGGATACGCAGCACATA 59.931 43.478 0.00 0.00 42.51 2.29
30 31 2.158914 TCTTCATGGATACGCAGCACAT 60.159 45.455 0.00 0.00 42.51 3.21
31 32 1.206849 TCTTCATGGATACGCAGCACA 59.793 47.619 0.00 0.00 42.51 4.57
32 33 1.939974 TCTTCATGGATACGCAGCAC 58.060 50.000 0.00 0.00 42.51 4.40
33 34 2.093500 AGTTCTTCATGGATACGCAGCA 60.093 45.455 0.00 0.00 42.51 4.41
34 35 2.555199 AGTTCTTCATGGATACGCAGC 58.445 47.619 0.00 0.00 42.51 5.25
35 36 6.042777 TCTTTAGTTCTTCATGGATACGCAG 58.957 40.000 0.00 0.00 42.51 5.18
36 37 5.972935 TCTTTAGTTCTTCATGGATACGCA 58.027 37.500 0.00 0.00 42.51 5.24
37 38 6.903883 TTCTTTAGTTCTTCATGGATACGC 57.096 37.500 0.00 0.00 42.51 4.42
69 70 9.994432 CGCATTTCTTATTCTTTAGTTCTTCAT 57.006 29.630 0.00 0.00 0.00 2.57
70 71 7.962918 GCGCATTTCTTATTCTTTAGTTCTTCA 59.037 33.333 0.30 0.00 0.00 3.02
71 72 7.162708 CGCGCATTTCTTATTCTTTAGTTCTTC 59.837 37.037 8.75 0.00 0.00 2.87
72 73 6.961554 CGCGCATTTCTTATTCTTTAGTTCTT 59.038 34.615 8.75 0.00 0.00 2.52
73 74 6.478588 CGCGCATTTCTTATTCTTTAGTTCT 58.521 36.000 8.75 0.00 0.00 3.01
74 75 5.169738 GCGCGCATTTCTTATTCTTTAGTTC 59.830 40.000 29.10 0.00 0.00 3.01
75 76 5.028375 GCGCGCATTTCTTATTCTTTAGTT 58.972 37.500 29.10 0.00 0.00 2.24
76 77 4.495844 GGCGCGCATTTCTTATTCTTTAGT 60.496 41.667 34.42 0.00 0.00 2.24
77 78 3.968724 GGCGCGCATTTCTTATTCTTTAG 59.031 43.478 34.42 0.00 0.00 1.85
78 79 3.375610 TGGCGCGCATTTCTTATTCTTTA 59.624 39.130 34.42 0.00 0.00 1.85
79 80 2.163412 TGGCGCGCATTTCTTATTCTTT 59.837 40.909 34.42 0.00 0.00 2.52
80 81 1.742831 TGGCGCGCATTTCTTATTCTT 59.257 42.857 34.42 0.00 0.00 2.52
81 82 1.331756 CTGGCGCGCATTTCTTATTCT 59.668 47.619 34.42 0.00 0.00 2.40
82 83 1.064060 ACTGGCGCGCATTTCTTATTC 59.936 47.619 34.42 11.73 0.00 1.75
83 84 1.094785 ACTGGCGCGCATTTCTTATT 58.905 45.000 34.42 2.51 0.00 1.40
84 85 1.094785 AACTGGCGCGCATTTCTTAT 58.905 45.000 34.42 7.04 0.00 1.73
85 86 1.728068 TAACTGGCGCGCATTTCTTA 58.272 45.000 34.42 16.38 0.00 2.10
86 87 0.878416 TTAACTGGCGCGCATTTCTT 59.122 45.000 34.42 17.40 0.00 2.52
87 88 0.447801 CTTAACTGGCGCGCATTTCT 59.552 50.000 34.42 15.00 0.00 2.52
88 89 0.523335 CCTTAACTGGCGCGCATTTC 60.523 55.000 34.42 16.23 0.00 2.17
89 90 1.241315 ACCTTAACTGGCGCGCATTT 61.241 50.000 34.42 23.06 0.00 2.32
90 91 0.391927 TACCTTAACTGGCGCGCATT 60.392 50.000 34.42 24.47 0.00 3.56
91 92 0.179056 ATACCTTAACTGGCGCGCAT 60.179 50.000 34.42 17.77 0.00 4.73
92 93 1.087202 CATACCTTAACTGGCGCGCA 61.087 55.000 34.42 17.93 0.00 6.09
149 152 2.290323 GCCTTCCCTTTCTACTGAAGCA 60.290 50.000 0.00 0.00 34.31 3.91
157 160 1.298953 ATGCAGGCCTTCCCTTTCTA 58.701 50.000 0.00 0.00 43.06 2.10
159 162 0.820226 GAATGCAGGCCTTCCCTTTC 59.180 55.000 0.00 5.16 43.06 2.62
219 231 4.083862 GACCTGGAGTCCACGGGC 62.084 72.222 23.56 19.81 39.84 6.13
220 232 3.760035 CGACCTGGAGTCCACGGG 61.760 72.222 23.56 19.66 43.08 5.28
221 233 4.436998 GCGACCTGGAGTCCACGG 62.437 72.222 18.98 19.60 43.08 4.94
222 234 3.633094 CTGCGACCTGGAGTCCACG 62.633 68.421 8.12 12.08 43.08 4.94
223 235 2.262915 CTGCGACCTGGAGTCCAC 59.737 66.667 8.12 0.00 43.08 4.02
224 236 2.805313 ATCCTGCGACCTGGAGTCCA 62.805 60.000 12.40 12.40 43.08 4.02
225 237 2.022240 GATCCTGCGACCTGGAGTCC 62.022 65.000 0.73 0.73 43.08 3.85
226 238 1.439644 GATCCTGCGACCTGGAGTC 59.560 63.158 0.00 0.00 41.62 3.36
227 239 2.418910 CGATCCTGCGACCTGGAGT 61.419 63.158 0.00 0.00 41.62 3.85
228 240 1.459455 ATCGATCCTGCGACCTGGAG 61.459 60.000 0.00 0.00 43.79 3.86
229 241 1.455773 ATCGATCCTGCGACCTGGA 60.456 57.895 0.00 0.00 43.79 3.86
230 242 1.006805 GATCGATCCTGCGACCTGG 60.007 63.158 14.76 0.00 43.79 4.45
231 243 1.006805 GGATCGATCCTGCGACCTG 60.007 63.158 32.91 0.00 43.79 4.00
232 244 2.203771 GGGATCGATCCTGCGACCT 61.204 63.158 36.72 0.00 46.35 3.85
248 260 4.875713 AATAAGGCGCTGGCGGGG 62.876 66.667 16.61 5.93 41.24 5.73
252 264 0.170339 ACGAAAAATAAGGCGCTGGC 59.830 50.000 7.64 0.00 38.90 4.85
384 399 7.047271 GGTATGTAATCACAAAAATGCCCAAT 58.953 34.615 0.00 0.00 38.42 3.16
409 3655 0.879090 GCAGAAAACCCCCTTACGTG 59.121 55.000 0.00 0.00 0.00 4.49
645 4698 9.772973 TGTGTAACATGACTGATTTACTAACTT 57.227 29.630 0.00 0.00 45.67 2.66
763 4816 3.360867 ACTGGTGAATTTTGTGTGTGGA 58.639 40.909 0.00 0.00 0.00 4.02
865 4919 6.731292 AAGAAGCTTTCCCTTTTGTTACAT 57.269 33.333 0.00 0.00 0.00 2.29
866 4920 6.538945 AAAGAAGCTTTCCCTTTTGTTACA 57.461 33.333 0.00 0.00 0.00 2.41
867 4921 7.713750 AGTAAAGAAGCTTTCCCTTTTGTTAC 58.286 34.615 14.64 8.52 32.92 2.50
891 4945 7.065324 TGTCGCCCATTATCTACTTGTTTTTAG 59.935 37.037 0.00 0.00 0.00 1.85
898 4952 7.521529 CATTATTGTCGCCCATTATCTACTTG 58.478 38.462 0.00 0.00 0.00 3.16
916 4970 6.917533 AGGAAAGAGTTCAAGTGCATTATTG 58.082 36.000 0.00 0.00 35.25 1.90
921 4975 4.363991 AGAGGAAAGAGTTCAAGTGCAT 57.636 40.909 0.00 0.00 35.25 3.96
922 4976 3.845781 AGAGGAAAGAGTTCAAGTGCA 57.154 42.857 0.00 0.00 35.25 4.57
947 5002 5.105595 GCTCTTTTAAATGCATCACTTCCCT 60.106 40.000 0.00 0.00 0.00 4.20
950 5005 6.850555 AGAGCTCTTTTAAATGCATCACTTC 58.149 36.000 11.45 0.00 0.00 3.01
979 5035 7.701924 CACCATTGTTACCTGCAAAATATACAG 59.298 37.037 0.00 0.00 0.00 2.74
1059 5115 1.821216 CACCCAATAGAAGCAACGGT 58.179 50.000 0.00 0.00 0.00 4.83
1071 5127 6.819649 CACAATTGATTTTGATAGCACCCAAT 59.180 34.615 13.59 0.00 0.00 3.16
1389 5445 1.619332 AGGTCGAGGACTTGGAGTTTC 59.381 52.381 0.00 0.00 32.47 2.78
1395 5451 0.179134 CGCTTAGGTCGAGGACTTGG 60.179 60.000 0.00 0.00 32.47 3.61
1503 5559 4.402474 AGGCTTAATTTTGGAGGGATTTCG 59.598 41.667 0.00 0.00 0.00 3.46
1563 5619 0.533755 GGATGATCCCGGTGAGCTTG 60.534 60.000 0.00 0.00 0.00 4.01
1584 5640 0.768622 TGATGTTTCCGAGGGTTGGT 59.231 50.000 0.00 0.00 0.00 3.67
1622 5678 8.618240 TCCAGTTAGATTATTGTAGGAAAGGA 57.382 34.615 0.00 0.00 0.00 3.36
1688 5744 1.912862 ATTTCCTCCTAGGGCCACAT 58.087 50.000 9.46 0.00 35.59 3.21
1689 5745 2.408565 CTATTTCCTCCTAGGGCCACA 58.591 52.381 9.46 0.00 35.59 4.17
1690 5746 1.700186 CCTATTTCCTCCTAGGGCCAC 59.300 57.143 9.46 0.00 35.59 5.01
1765 5821 3.006323 AGCATATTCGACTCCAAGGCTAG 59.994 47.826 0.00 0.00 0.00 3.42
1769 5829 3.743396 GCTTAGCATATTCGACTCCAAGG 59.257 47.826 0.00 0.00 0.00 3.61
1844 5904 6.037098 CCTTCAAACACGTTGGTATTCAAAA 58.963 36.000 0.00 0.00 37.85 2.44
2254 7067 4.021916 AGCTTCCCAATCCATTCTTCAAG 58.978 43.478 0.00 0.00 0.00 3.02
2329 7142 1.377202 GCTGGCCAAGGAACGATGA 60.377 57.895 7.01 0.00 0.00 2.92
2355 7311 7.205992 TGTTTCCTAGATCAAGATCGATCAAG 58.794 38.462 26.47 17.68 43.61 3.02
2723 7680 9.933723 TCATATCTTGTATGAGTGTCCAATATG 57.066 33.333 0.00 0.00 31.09 1.78
2785 7742 9.802039 GGGAGAAGAAAGATAGAGATAAGAGTA 57.198 37.037 0.00 0.00 0.00 2.59
2786 7743 8.511126 AGGGAGAAGAAAGATAGAGATAAGAGT 58.489 37.037 0.00 0.00 0.00 3.24
2787 7744 8.940397 AGGGAGAAGAAAGATAGAGATAAGAG 57.060 38.462 0.00 0.00 0.00 2.85
2788 7745 8.506921 TGAGGGAGAAGAAAGATAGAGATAAGA 58.493 37.037 0.00 0.00 0.00 2.10
2789 7746 8.704849 TGAGGGAGAAGAAAGATAGAGATAAG 57.295 38.462 0.00 0.00 0.00 1.73
2790 7747 9.142014 CTTGAGGGAGAAGAAAGATAGAGATAA 57.858 37.037 0.00 0.00 0.00 1.75
2791 7748 8.285891 ACTTGAGGGAGAAGAAAGATAGAGATA 58.714 37.037 0.00 0.00 0.00 1.98
2792 7749 7.132128 ACTTGAGGGAGAAGAAAGATAGAGAT 58.868 38.462 0.00 0.00 0.00 2.75
2793 7750 6.498538 ACTTGAGGGAGAAGAAAGATAGAGA 58.501 40.000 0.00 0.00 0.00 3.10
2794 7751 6.790232 ACTTGAGGGAGAAGAAAGATAGAG 57.210 41.667 0.00 0.00 0.00 2.43
2795 7752 6.498651 ACAACTTGAGGGAGAAGAAAGATAGA 59.501 38.462 0.00 0.00 0.00 1.98
2796 7753 6.706295 ACAACTTGAGGGAGAAGAAAGATAG 58.294 40.000 0.00 0.00 0.00 2.08
2797 7754 6.688073 ACAACTTGAGGGAGAAGAAAGATA 57.312 37.500 0.00 0.00 0.00 1.98
2798 7755 5.574970 ACAACTTGAGGGAGAAGAAAGAT 57.425 39.130 0.00 0.00 0.00 2.40
2799 7756 6.494666 TTACAACTTGAGGGAGAAGAAAGA 57.505 37.500 0.00 0.00 0.00 2.52
2800 7757 7.164803 AGATTACAACTTGAGGGAGAAGAAAG 58.835 38.462 0.00 0.00 0.00 2.62
2801 7758 7.079451 AGATTACAACTTGAGGGAGAAGAAA 57.921 36.000 0.00 0.00 0.00 2.52
2802 7759 6.295916 GGAGATTACAACTTGAGGGAGAAGAA 60.296 42.308 0.00 0.00 0.00 2.52
2803 7760 5.187967 GGAGATTACAACTTGAGGGAGAAGA 59.812 44.000 0.00 0.00 0.00 2.87
2804 7761 5.423886 GGAGATTACAACTTGAGGGAGAAG 58.576 45.833 0.00 0.00 0.00 2.85
2805 7762 4.225267 GGGAGATTACAACTTGAGGGAGAA 59.775 45.833 0.00 0.00 0.00 2.87
2806 7763 3.775316 GGGAGATTACAACTTGAGGGAGA 59.225 47.826 0.00 0.00 0.00 3.71
2807 7764 3.519510 TGGGAGATTACAACTTGAGGGAG 59.480 47.826 0.00 0.00 0.00 4.30
2808 7765 3.526899 TGGGAGATTACAACTTGAGGGA 58.473 45.455 0.00 0.00 0.00 4.20
2809 7766 4.010349 GTTGGGAGATTACAACTTGAGGG 58.990 47.826 0.00 0.00 42.67 4.30
2816 7773 4.034048 CGCATACAGTTGGGAGATTACAAC 59.966 45.833 0.00 0.00 45.45 3.32
2817 7774 4.188462 CGCATACAGTTGGGAGATTACAA 58.812 43.478 0.00 0.00 0.00 2.41
2818 7775 3.792401 CGCATACAGTTGGGAGATTACA 58.208 45.455 0.00 0.00 0.00 2.41
2819 7776 2.544267 GCGCATACAGTTGGGAGATTAC 59.456 50.000 0.30 0.00 0.00 1.89
2820 7777 2.434336 AGCGCATACAGTTGGGAGATTA 59.566 45.455 11.47 0.00 0.00 1.75
2821 7778 1.210478 AGCGCATACAGTTGGGAGATT 59.790 47.619 11.47 0.00 0.00 2.40
2822 7779 0.833287 AGCGCATACAGTTGGGAGAT 59.167 50.000 11.47 0.00 0.00 2.75
2823 7780 1.480789 TAGCGCATACAGTTGGGAGA 58.519 50.000 11.47 0.00 0.00 3.71
2824 7781 2.408050 GATAGCGCATACAGTTGGGAG 58.592 52.381 11.47 0.00 0.00 4.30
2825 7782 1.070134 GGATAGCGCATACAGTTGGGA 59.930 52.381 11.47 0.00 0.00 4.37
2826 7783 1.202639 TGGATAGCGCATACAGTTGGG 60.203 52.381 11.47 0.00 0.00 4.12
2827 7784 2.138320 CTGGATAGCGCATACAGTTGG 58.862 52.381 18.46 1.08 40.35 3.77
2828 7785 2.138320 CCTGGATAGCGCATACAGTTG 58.862 52.381 22.39 10.62 43.35 3.16
2829 7786 1.070758 CCCTGGATAGCGCATACAGTT 59.929 52.381 22.39 0.51 43.35 3.16
2830 7787 0.681733 CCCTGGATAGCGCATACAGT 59.318 55.000 22.39 1.18 43.35 3.55
2831 7788 0.969149 TCCCTGGATAGCGCATACAG 59.031 55.000 19.31 19.31 44.36 2.74
2832 7789 0.969149 CTCCCTGGATAGCGCATACA 59.031 55.000 11.47 7.39 0.00 2.29
2833 7790 0.247736 CCTCCCTGGATAGCGCATAC 59.752 60.000 11.47 2.23 38.35 2.39
2834 7791 0.178932 ACCTCCCTGGATAGCGCATA 60.179 55.000 11.47 0.00 39.71 3.14
2835 7792 1.460305 ACCTCCCTGGATAGCGCAT 60.460 57.895 11.47 0.06 39.71 4.73
2836 7793 2.041922 ACCTCCCTGGATAGCGCA 60.042 61.111 11.47 0.00 39.71 6.09
2837 7794 2.423446 CACCTCCCTGGATAGCGC 59.577 66.667 0.00 0.00 39.71 5.92
2838 7795 2.423446 GCACCTCCCTGGATAGCG 59.577 66.667 0.00 0.00 39.71 4.26
2839 7796 2.423446 CGCACCTCCCTGGATAGC 59.577 66.667 0.00 0.00 39.71 2.97
2840 7797 2.423446 GCGCACCTCCCTGGATAG 59.577 66.667 0.30 0.00 39.71 2.08
2841 7798 3.161450 GGCGCACCTCCCTGGATA 61.161 66.667 10.83 0.00 39.71 2.59
2851 7808 2.618368 TTTATAGGCAGGGGCGCACC 62.618 60.000 24.88 24.88 42.47 5.01
2852 7809 1.153046 TTTATAGGCAGGGGCGCAC 60.153 57.895 10.83 4.83 42.47 5.34
2853 7810 1.153046 GTTTATAGGCAGGGGCGCA 60.153 57.895 10.83 0.00 42.47 6.09
2854 7811 0.537371 ATGTTTATAGGCAGGGGCGC 60.537 55.000 0.00 0.00 42.47 6.53
2855 7812 1.238439 CATGTTTATAGGCAGGGGCG 58.762 55.000 0.00 0.00 42.47 6.13
2856 7813 0.961753 GCATGTTTATAGGCAGGGGC 59.038 55.000 0.00 0.00 40.13 5.80
2857 7814 1.956477 GTGCATGTTTATAGGCAGGGG 59.044 52.381 0.00 0.00 36.86 4.79
2858 7815 1.603802 CGTGCATGTTTATAGGCAGGG 59.396 52.381 0.00 0.00 38.19 4.45
2859 7816 1.603802 CCGTGCATGTTTATAGGCAGG 59.396 52.381 4.96 0.00 40.65 4.85
2860 7817 1.002468 GCCGTGCATGTTTATAGGCAG 60.002 52.381 4.96 0.00 42.37 4.85
2861 7818 1.021202 GCCGTGCATGTTTATAGGCA 58.979 50.000 4.96 0.00 42.37 4.75
2862 7819 0.041312 CGCCGTGCATGTTTATAGGC 60.041 55.000 4.96 0.00 39.68 3.93
2863 7820 1.260561 GACGCCGTGCATGTTTATAGG 59.739 52.381 0.00 0.00 0.00 2.57
2864 7821 1.260561 GGACGCCGTGCATGTTTATAG 59.739 52.381 3.13 0.00 0.00 1.31
2865 7822 1.292061 GGACGCCGTGCATGTTTATA 58.708 50.000 3.13 0.00 0.00 0.98
2866 7823 1.373590 GGGACGCCGTGCATGTTTAT 61.374 55.000 11.71 0.00 0.00 1.40
2867 7824 2.036006 GGGACGCCGTGCATGTTTA 61.036 57.895 11.71 0.00 0.00 2.01
2868 7825 3.361977 GGGACGCCGTGCATGTTT 61.362 61.111 11.71 0.00 0.00 2.83
2876 7833 4.816984 ATCGAGAGGGGACGCCGT 62.817 66.667 2.39 0.00 0.00 5.68
2877 7834 4.271816 CATCGAGAGGGGACGCCG 62.272 72.222 2.39 0.00 0.00 6.46
2878 7835 2.833582 TCATCGAGAGGGGACGCC 60.834 66.667 0.00 0.00 0.00 5.68
2879 7836 2.725008 CTCATCGAGAGGGGACGC 59.275 66.667 0.00 0.00 40.84 5.19
2886 7843 4.974368 AAGTGTCTTACCTCATCGAGAG 57.026 45.455 0.00 0.00 44.31 3.20
2887 7844 4.142665 CGAAAGTGTCTTACCTCATCGAGA 60.143 45.833 0.00 0.00 0.00 4.04
2888 7845 4.099120 CGAAAGTGTCTTACCTCATCGAG 58.901 47.826 0.00 0.00 0.00 4.04
2889 7846 3.672511 GCGAAAGTGTCTTACCTCATCGA 60.673 47.826 0.00 0.00 0.00 3.59
2890 7847 2.599082 GCGAAAGTGTCTTACCTCATCG 59.401 50.000 0.00 0.00 0.00 3.84
2891 7848 2.930682 GGCGAAAGTGTCTTACCTCATC 59.069 50.000 0.00 0.00 0.00 2.92
2892 7849 2.567615 AGGCGAAAGTGTCTTACCTCAT 59.432 45.455 0.00 0.00 0.00 2.90
2893 7850 1.968493 AGGCGAAAGTGTCTTACCTCA 59.032 47.619 0.00 0.00 0.00 3.86
2894 7851 2.745515 AGGCGAAAGTGTCTTACCTC 57.254 50.000 0.00 0.00 0.00 3.85
2895 7852 3.613432 CGTTAGGCGAAAGTGTCTTACCT 60.613 47.826 0.00 0.00 44.77 3.08
2896 7853 2.665052 CGTTAGGCGAAAGTGTCTTACC 59.335 50.000 0.00 0.00 44.77 2.85
2897 7854 2.091744 GCGTTAGGCGAAAGTGTCTTAC 59.908 50.000 0.00 0.00 44.77 2.34
2898 7855 2.331194 GCGTTAGGCGAAAGTGTCTTA 58.669 47.619 0.00 0.00 44.77 2.10
2899 7856 1.145803 GCGTTAGGCGAAAGTGTCTT 58.854 50.000 0.00 0.00 44.77 3.01
2900 7857 2.823628 GCGTTAGGCGAAAGTGTCT 58.176 52.632 0.00 0.00 44.77 3.41
2910 7867 0.727398 GTCAATCCTGTGCGTTAGGC 59.273 55.000 0.00 0.00 43.96 3.93
2911 7868 2.093306 TGTCAATCCTGTGCGTTAGG 57.907 50.000 0.00 0.00 36.63 2.69
2912 7869 2.223112 GCATGTCAATCCTGTGCGTTAG 60.223 50.000 0.00 0.00 0.00 2.34
2913 7870 1.737236 GCATGTCAATCCTGTGCGTTA 59.263 47.619 0.00 0.00 0.00 3.18
2914 7871 0.523072 GCATGTCAATCCTGTGCGTT 59.477 50.000 0.00 0.00 0.00 4.84
2915 7872 2.174334 GCATGTCAATCCTGTGCGT 58.826 52.632 0.00 0.00 0.00 5.24
2917 7874 0.376152 CTCGCATGTCAATCCTGTGC 59.624 55.000 0.00 0.00 0.00 4.57
2918 7875 0.376152 GCTCGCATGTCAATCCTGTG 59.624 55.000 0.00 0.00 0.00 3.66
2919 7876 0.251354 AGCTCGCATGTCAATCCTGT 59.749 50.000 0.00 0.00 0.00 4.00
2920 7877 0.656259 CAGCTCGCATGTCAATCCTG 59.344 55.000 0.00 0.00 0.00 3.86
2921 7878 1.094073 GCAGCTCGCATGTCAATCCT 61.094 55.000 0.00 0.00 41.79 3.24
2922 7879 1.354506 GCAGCTCGCATGTCAATCC 59.645 57.895 0.00 0.00 41.79 3.01
2923 7880 1.094073 AGGCAGCTCGCATGTCAATC 61.094 55.000 9.78 0.00 45.17 2.67
2924 7881 0.679002 AAGGCAGCTCGCATGTCAAT 60.679 50.000 9.78 0.00 45.17 2.57
2930 7887 2.437359 GGTCAAGGCAGCTCGCAT 60.437 61.111 9.78 0.56 45.17 4.73
2933 7890 4.749310 AGCGGTCAAGGCAGCTCG 62.749 66.667 0.00 0.00 35.04 5.03
2938 7895 3.241530 ACCTGAGCGGTCAAGGCA 61.242 61.111 23.98 3.41 44.93 4.75
2939 7896 2.743928 CACCTGAGCGGTCAAGGC 60.744 66.667 23.98 0.00 44.93 4.35
2946 7903 2.507992 CGAGAAGCACCTGAGCGG 60.508 66.667 0.00 0.00 40.15 5.52
2947 7904 2.507992 CCGAGAAGCACCTGAGCG 60.508 66.667 0.00 0.00 40.15 5.03
2954 7911 3.991536 GAGGACCGCCGAGAAGCAC 62.992 68.421 0.00 0.00 39.96 4.40
2956 7913 3.760035 TGAGGACCGCCGAGAAGC 61.760 66.667 0.00 0.00 39.96 3.86
2963 7920 1.401905 GATGAATTTGTGAGGACCGCC 59.598 52.381 0.00 0.00 0.00 6.13
2978 7935 1.123077 CGGGAGAGGTCATGGATGAA 58.877 55.000 0.00 0.00 38.75 2.57
2996 7953 1.755179 ACCAGCATTTTGGATCCTCG 58.245 50.000 14.23 0.00 40.87 4.63
3011 7968 4.260784 GCACTTGAGCCGATAATAAACCAG 60.261 45.833 0.00 0.00 0.00 4.00
3016 7973 2.872245 GCTGCACTTGAGCCGATAATAA 59.128 45.455 0.00 0.00 0.00 1.40
3030 7987 3.551863 GCGAATAGTATGAGAGCTGCACT 60.552 47.826 1.02 0.00 0.00 4.40
3031 7988 2.728839 GCGAATAGTATGAGAGCTGCAC 59.271 50.000 1.02 0.00 0.00 4.57
3033 7990 2.288457 TGGCGAATAGTATGAGAGCTGC 60.288 50.000 0.00 0.00 0.00 5.25
3034 7991 3.312828 GTGGCGAATAGTATGAGAGCTG 58.687 50.000 0.00 0.00 0.00 4.24
3043 8000 2.355310 CCAAACAGGGTGGCGAATAGTA 60.355 50.000 0.00 0.00 0.00 1.82
3057 8014 0.179029 ACGTTCCTCACCCCAAACAG 60.179 55.000 0.00 0.00 0.00 3.16
3072 8029 2.047274 CGGGATGGACAGCACGTT 60.047 61.111 3.78 0.00 39.02 3.99
3076 8033 1.549243 TACAAGCGGGATGGACAGCA 61.549 55.000 0.00 0.00 0.00 4.41
3077 8034 0.392461 TTACAAGCGGGATGGACAGC 60.392 55.000 0.00 0.00 0.00 4.40
3078 8035 1.656652 CTTACAAGCGGGATGGACAG 58.343 55.000 0.00 0.00 0.00 3.51
3079 8036 0.251916 CCTTACAAGCGGGATGGACA 59.748 55.000 0.00 0.00 0.00 4.02
3086 8043 0.244450 TACACGACCTTACAAGCGGG 59.756 55.000 0.00 0.00 0.00 6.13
3098 8055 0.525668 CAGAGATGCGGGTACACGAC 60.526 60.000 24.33 13.38 35.47 4.34
3104 8061 2.101415 CTCAATCACAGAGATGCGGGTA 59.899 50.000 0.00 0.00 36.96 3.69
3105 8062 0.904649 TCAATCACAGAGATGCGGGT 59.095 50.000 0.00 0.00 36.96 5.28
3108 8065 2.471818 CTCCTCAATCACAGAGATGCG 58.528 52.381 0.00 0.00 36.96 4.73
3116 8073 0.252881 AGGGCTCCTCCTCAATCACA 60.253 55.000 0.00 0.00 29.56 3.58
3131 8088 1.347378 GAGATCATCCAGGAAGAGGGC 59.653 57.143 0.01 0.00 0.00 5.19
3134 8091 5.047802 GCTAAGAGAGATCATCCAGGAAGAG 60.048 48.000 0.01 0.00 0.00 2.85
3149 8106 4.202243 CCATCCCAAAGAGAGCTAAGAGAG 60.202 50.000 0.00 0.00 0.00 3.20
3152 8109 3.452627 GACCATCCCAAAGAGAGCTAAGA 59.547 47.826 0.00 0.00 0.00 2.10
3155 8112 2.119495 GGACCATCCCAAAGAGAGCTA 58.881 52.381 0.00 0.00 0.00 3.32
3162 8119 3.569701 CCGATTTATGGACCATCCCAAAG 59.430 47.826 11.17 0.00 40.04 2.77
3163 8120 3.561143 CCGATTTATGGACCATCCCAAA 58.439 45.455 11.17 6.81 40.04 3.28
3164 8121 2.751479 GCCGATTTATGGACCATCCCAA 60.751 50.000 11.17 3.18 40.04 4.12
3165 8122 1.202879 GCCGATTTATGGACCATCCCA 60.203 52.381 11.17 0.00 41.05 4.37
3170 8127 2.727123 ACATGCCGATTTATGGACCA 57.273 45.000 0.00 0.00 0.00 4.02
3173 8130 5.924356 TCTTTCTACATGCCGATTTATGGA 58.076 37.500 0.00 0.00 0.00 3.41
3179 8136 6.375455 AGTTTGATTCTTTCTACATGCCGATT 59.625 34.615 0.00 0.00 0.00 3.34
3180 8137 5.882557 AGTTTGATTCTTTCTACATGCCGAT 59.117 36.000 0.00 0.00 0.00 4.18
3181 8138 5.245531 AGTTTGATTCTTTCTACATGCCGA 58.754 37.500 0.00 0.00 0.00 5.54
3182 8139 5.551760 AGTTTGATTCTTTCTACATGCCG 57.448 39.130 0.00 0.00 0.00 5.69
3185 8142 8.807667 AAGCAAAGTTTGATTCTTTCTACATG 57.192 30.769 19.82 0.00 33.30 3.21
3217 8174 3.992943 TGGATAACTAACAGGGTGTGG 57.007 47.619 0.00 0.00 0.00 4.17
3219 8176 6.043938 TCTCTTTTGGATAACTAACAGGGTGT 59.956 38.462 0.00 0.00 0.00 4.16
3232 8189 4.280436 TGCCGAGTTTCTCTTTTGGATA 57.720 40.909 0.00 0.00 0.00 2.59
3251 8208 3.057315 AGCATGTGAGTGTTTTACCATGC 60.057 43.478 13.01 13.01 45.20 4.06
3252 8209 4.669965 CGAGCATGTGAGTGTTTTACCATG 60.670 45.833 0.00 0.00 32.75 3.66
3255 8212 2.412847 GCGAGCATGTGAGTGTTTTACC 60.413 50.000 0.00 0.00 0.00 2.85
3258 8215 1.597742 AGCGAGCATGTGAGTGTTTT 58.402 45.000 0.00 0.00 0.00 2.43
3264 8221 2.931969 TCATTTGTAGCGAGCATGTGAG 59.068 45.455 0.00 0.00 0.00 3.51
3266 8223 2.416202 TGTCATTTGTAGCGAGCATGTG 59.584 45.455 0.00 0.00 0.00 3.21
3270 8227 4.475028 CATTTTGTCATTTGTAGCGAGCA 58.525 39.130 0.00 0.00 0.00 4.26
3272 8229 5.046910 ACCATTTTGTCATTTGTAGCGAG 57.953 39.130 0.00 0.00 0.00 5.03
3274 8231 5.218885 TCAACCATTTTGTCATTTGTAGCG 58.781 37.500 0.00 0.00 0.00 4.26
3300 8257 9.075678 GCCTCAGAGGTAATATACTACTTTACA 57.924 37.037 18.37 0.00 37.80 2.41
3301 8258 8.522003 GGCCTCAGAGGTAATATACTACTTTAC 58.478 40.741 18.37 0.00 37.80 2.01
3302 8259 8.229605 TGGCCTCAGAGGTAATATACTACTTTA 58.770 37.037 18.37 0.00 37.80 1.85
3303 8260 7.073854 TGGCCTCAGAGGTAATATACTACTTT 58.926 38.462 18.37 0.00 37.80 2.66
3304 8261 6.621394 TGGCCTCAGAGGTAATATACTACTT 58.379 40.000 18.37 0.00 37.80 2.24
3305 8262 6.215515 TGGCCTCAGAGGTAATATACTACT 57.784 41.667 18.37 0.00 37.80 2.57
3306 8263 6.663953 TCATGGCCTCAGAGGTAATATACTAC 59.336 42.308 18.37 0.00 37.80 2.73
3307 8264 6.800890 TCATGGCCTCAGAGGTAATATACTA 58.199 40.000 18.37 0.00 37.80 1.82
3308 8265 5.655394 TCATGGCCTCAGAGGTAATATACT 58.345 41.667 18.37 0.00 37.80 2.12
3309 8266 6.344500 CATCATGGCCTCAGAGGTAATATAC 58.656 44.000 18.37 0.00 37.80 1.47
3310 8267 5.426509 CCATCATGGCCTCAGAGGTAATATA 59.573 44.000 18.37 4.69 37.80 0.86
3311 8268 4.226846 CCATCATGGCCTCAGAGGTAATAT 59.773 45.833 18.37 4.91 37.80 1.28
3312 8269 3.584406 CCATCATGGCCTCAGAGGTAATA 59.416 47.826 18.37 2.71 37.80 0.98
3313 8270 2.374504 CCATCATGGCCTCAGAGGTAAT 59.625 50.000 18.37 9.05 37.80 1.89
3314 8271 1.770658 CCATCATGGCCTCAGAGGTAA 59.229 52.381 18.37 7.00 37.80 2.85
3315 8272 1.427809 CCATCATGGCCTCAGAGGTA 58.572 55.000 18.37 8.10 37.80 3.08
3316 8273 2.228711 CCATCATGGCCTCAGAGGT 58.771 57.895 18.37 0.00 37.80 3.85
3362 8319 4.743493 TCATCAACGAAATCGATCTCACA 58.257 39.130 10.16 0.00 43.02 3.58
3369 8326 5.062183 GTGATCAACTCATCAACGAAATCGA 59.938 40.000 10.16 0.00 38.35 3.59
3371 8328 6.169419 TGTGATCAACTCATCAACGAAATC 57.831 37.500 0.00 0.00 34.50 2.17
3372 8329 6.558771 TTGTGATCAACTCATCAACGAAAT 57.441 33.333 0.00 0.00 34.50 2.17
3388 8345 2.511600 CGGGGAGGCGTTGTGATC 60.512 66.667 0.00 0.00 0.00 2.92
3393 8350 4.856801 CATCCCGGGGAGGCGTTG 62.857 72.222 23.50 10.57 39.21 4.10
3409 8366 0.482446 AGGCAGGATGGTTGTTTCCA 59.518 50.000 0.00 0.00 42.01 3.53
3418 8375 2.599597 CCCCAGAAGGCAGGATGG 59.400 66.667 0.00 0.00 35.86 3.51
3470 8427 5.070313 TGCAAGGCAGTTTAGGAAAGATTTT 59.930 36.000 0.00 0.00 33.32 1.82
3506 8463 0.892755 ATGAAAGACTCGCGGTGGTA 59.107 50.000 6.13 0.00 0.00 3.25
3514 8471 2.084610 TGTCAGGCATGAAAGACTCG 57.915 50.000 0.92 0.00 37.14 4.18
3525 8482 1.948721 ATCGACGAGCATGTCAGGCA 61.949 55.000 12.67 0.00 38.84 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.