Multiple sequence alignment - TraesCS3D01G463600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G463600 chr3D 100.000 4062 0 0 1 4062 567748049 567743988 0.000000e+00 7502.0
1 TraesCS3D01G463600 chr3D 82.842 915 96 16 3152 4012 512745628 512746535 0.000000e+00 763.0
2 TraesCS3D01G463600 chr3D 88.479 217 23 2 3124 3339 421312278 421312063 1.120000e-65 261.0
3 TraesCS3D01G463600 chr4A 94.124 1770 99 3 1354 3122 603034129 603035894 0.000000e+00 2687.0
4 TraesCS3D01G463600 chr4A 88.578 823 79 4 500 1311 603033313 603034131 0.000000e+00 985.0
5 TraesCS3D01G463600 chr4A 83.237 173 26 3 1 172 639192208 639192038 5.440000e-34 156.0
6 TraesCS3D01G463600 chr4D 85.663 2483 275 36 213 2660 1664231 1666667 0.000000e+00 2538.0
7 TraesCS3D01G463600 chr2B 83.963 979 82 25 3120 4047 595132081 595131127 0.000000e+00 869.0
8 TraesCS3D01G463600 chr2B 88.688 221 21 4 3120 3339 154501142 154501359 2.410000e-67 267.0
9 TraesCS3D01G463600 chr2B 84.416 154 20 4 22 172 142384763 142384915 9.100000e-32 148.0
10 TraesCS3D01G463600 chr6D 83.940 934 91 14 3124 4005 446814019 446813093 0.000000e+00 839.0
11 TraesCS3D01G463600 chr6D 80.114 528 91 10 1617 2142 21077184 21077699 8.240000e-102 381.0
12 TraesCS3D01G463600 chr5B 90.062 644 59 3 3419 4062 531813592 531812954 0.000000e+00 830.0
13 TraesCS3D01G463600 chr5B 86.050 595 77 3 3419 4012 421614263 421614852 5.730000e-178 634.0
14 TraesCS3D01G463600 chr5B 92.694 219 13 2 3121 3339 531813938 531813723 3.050000e-81 313.0
15 TraesCS3D01G463600 chr5B 74.799 623 92 32 3337 3924 589800579 589799987 1.900000e-53 220.0
16 TraesCS3D01G463600 chr5B 82.558 172 25 5 1 171 524453014 524452847 3.270000e-31 147.0
17 TraesCS3D01G463600 chr5B 82.558 172 25 5 1 171 524554879 524554712 3.270000e-31 147.0
18 TraesCS3D01G463600 chr5D 82.729 938 99 28 3127 4011 481974040 481974967 0.000000e+00 776.0
19 TraesCS3D01G463600 chr5D 78.357 499 91 10 1646 2143 447389918 447389436 1.420000e-79 307.0
20 TraesCS3D01G463600 chr5D 76.978 278 43 12 2401 2660 447305356 447305082 5.470000e-29 139.0
21 TraesCS3D01G463600 chr5D 75.875 257 48 10 2408 2654 447388748 447388496 7.130000e-23 119.0
22 TraesCS3D01G463600 chr7D 82.347 946 107 15 3121 4012 29037813 29038752 0.000000e+00 767.0
23 TraesCS3D01G463600 chr7D 83.257 878 87 32 3139 3963 89519291 89520161 0.000000e+00 752.0
24 TraesCS3D01G463600 chr4B 84.788 756 83 16 3333 4062 626111992 626111243 0.000000e+00 730.0
25 TraesCS3D01G463600 chr4B 91.364 220 16 3 3120 3339 626112229 626112013 8.540000e-77 298.0
26 TraesCS3D01G463600 chr5A 83.110 746 76 22 3124 3833 271498652 271497921 5.730000e-178 634.0
27 TraesCS3D01G463600 chr5A 84.706 85 12 1 546 629 458277397 458277481 2.600000e-12 84.2
28 TraesCS3D01G463600 chr1A 85.906 596 76 4 3419 4010 31248908 31249499 2.660000e-176 628.0
29 TraesCS3D01G463600 chr7B 89.140 221 20 4 3120 3339 145972362 145972145 5.170000e-69 272.0
30 TraesCS3D01G463600 chr1D 89.450 218 20 3 3125 3340 21703178 21703394 5.170000e-69 272.0
31 TraesCS3D01G463600 chr7A 89.352 216 21 1 3126 3339 36345793 36345578 1.860000e-68 270.0
32 TraesCS3D01G463600 chr7A 84.507 71 9 2 2995 3063 731464516 731464586 7.290000e-08 69.4
33 TraesCS3D01G463600 chr2D 77.835 388 56 18 3341 3703 522717334 522717716 3.180000e-51 213.0
34 TraesCS3D01G463600 chr2D 86.000 150 19 2 1 149 62964043 62964191 4.200000e-35 159.0
35 TraesCS3D01G463600 chr3A 80.973 226 30 10 3 218 674767285 674767063 2.510000e-37 167.0
36 TraesCS3D01G463600 chr3A 83.766 154 22 2 478 630 544423262 544423413 4.230000e-30 143.0
37 TraesCS3D01G463600 chr2A 83.333 174 26 3 1 172 729485971 729485799 1.510000e-34 158.0
38 TraesCS3D01G463600 chr2A 85.430 151 18 4 1 149 63832252 63832400 1.960000e-33 154.0
39 TraesCS3D01G463600 chr6B 79.885 174 28 6 1 171 34925753 34925922 1.980000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G463600 chr3D 567743988 567748049 4061 True 7502.0 7502 100.000 1 4062 1 chr3D.!!$R2 4061
1 TraesCS3D01G463600 chr3D 512745628 512746535 907 False 763.0 763 82.842 3152 4012 1 chr3D.!!$F1 860
2 TraesCS3D01G463600 chr4A 603033313 603035894 2581 False 1836.0 2687 91.351 500 3122 2 chr4A.!!$F1 2622
3 TraesCS3D01G463600 chr4D 1664231 1666667 2436 False 2538.0 2538 85.663 213 2660 1 chr4D.!!$F1 2447
4 TraesCS3D01G463600 chr2B 595131127 595132081 954 True 869.0 869 83.963 3120 4047 1 chr2B.!!$R1 927
5 TraesCS3D01G463600 chr6D 446813093 446814019 926 True 839.0 839 83.940 3124 4005 1 chr6D.!!$R1 881
6 TraesCS3D01G463600 chr6D 21077184 21077699 515 False 381.0 381 80.114 1617 2142 1 chr6D.!!$F1 525
7 TraesCS3D01G463600 chr5B 421614263 421614852 589 False 634.0 634 86.050 3419 4012 1 chr5B.!!$F1 593
8 TraesCS3D01G463600 chr5B 531812954 531813938 984 True 571.5 830 91.378 3121 4062 2 chr5B.!!$R4 941
9 TraesCS3D01G463600 chr5B 589799987 589800579 592 True 220.0 220 74.799 3337 3924 1 chr5B.!!$R3 587
10 TraesCS3D01G463600 chr5D 481974040 481974967 927 False 776.0 776 82.729 3127 4011 1 chr5D.!!$F1 884
11 TraesCS3D01G463600 chr5D 447388496 447389918 1422 True 213.0 307 77.116 1646 2654 2 chr5D.!!$R2 1008
12 TraesCS3D01G463600 chr7D 29037813 29038752 939 False 767.0 767 82.347 3121 4012 1 chr7D.!!$F1 891
13 TraesCS3D01G463600 chr7D 89519291 89520161 870 False 752.0 752 83.257 3139 3963 1 chr7D.!!$F2 824
14 TraesCS3D01G463600 chr4B 626111243 626112229 986 True 514.0 730 88.076 3120 4062 2 chr4B.!!$R1 942
15 TraesCS3D01G463600 chr5A 271497921 271498652 731 True 634.0 634 83.110 3124 3833 1 chr5A.!!$R1 709
16 TraesCS3D01G463600 chr1A 31248908 31249499 591 False 628.0 628 85.906 3419 4010 1 chr1A.!!$F1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.035152 ATCCAGCCGAGTTTGCATGA 60.035 50.0 0.00 0.0 0.00 3.07 F
192 193 0.040204 ATGGGGGAGGAACTTTGCAG 59.960 55.0 0.00 0.0 41.55 4.41 F
1554 1575 0.172803 GTGTACACCTGGCCTACTCG 59.827 60.0 15.42 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 1983 0.452987 CCGTTGCTCATGTTGATGGG 59.547 55.000 0.00 0.0 32.51 4.00 R
2000 2029 1.444553 CCGACGGTCTCAGCTTCAC 60.445 63.158 5.48 0.0 0.00 3.18 R
3490 4025 0.033503 TGGTGGCGAGATCAGGAGTA 60.034 55.000 0.00 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.816640 AGTTGAAAATATGACCAAAATGTGAC 57.183 30.769 0.00 0.00 0.00 3.67
31 32 7.872483 AGTTGAAAATATGACCAAAATGTGACC 59.128 33.333 0.00 0.00 0.00 4.02
32 33 7.295322 TGAAAATATGACCAAAATGTGACCA 57.705 32.000 0.00 0.00 0.00 4.02
33 34 7.905265 TGAAAATATGACCAAAATGTGACCAT 58.095 30.769 0.00 0.00 0.00 3.55
34 35 8.373981 TGAAAATATGACCAAAATGTGACCATT 58.626 29.630 0.00 0.00 43.14 3.16
47 48 7.718272 AATGTGACCATTTTTGTCTGATTTG 57.282 32.000 0.00 0.00 38.10 2.32
48 49 6.219417 TGTGACCATTTTTGTCTGATTTGT 57.781 33.333 0.00 0.00 33.83 2.83
49 50 7.340122 TGTGACCATTTTTGTCTGATTTGTA 57.660 32.000 0.00 0.00 33.83 2.41
50 51 7.950512 TGTGACCATTTTTGTCTGATTTGTAT 58.049 30.769 0.00 0.00 33.83 2.29
51 52 7.866898 TGTGACCATTTTTGTCTGATTTGTATG 59.133 33.333 0.00 0.00 33.83 2.39
52 53 8.081633 GTGACCATTTTTGTCTGATTTGTATGA 58.918 33.333 0.00 0.00 33.83 2.15
53 54 8.637099 TGACCATTTTTGTCTGATTTGTATGAA 58.363 29.630 0.00 0.00 33.83 2.57
54 55 9.474920 GACCATTTTTGTCTGATTTGTATGAAA 57.525 29.630 0.00 0.00 0.00 2.69
60 61 9.897744 TTTTGTCTGATTTGTATGAAATCTGTC 57.102 29.630 11.31 9.54 37.50 3.51
61 62 8.620116 TTGTCTGATTTGTATGAAATCTGTCA 57.380 30.769 11.31 11.21 37.50 3.58
62 63 8.797350 TGTCTGATTTGTATGAAATCTGTCAT 57.203 30.769 11.31 0.00 41.21 3.06
63 64 8.671028 TGTCTGATTTGTATGAAATCTGTCATG 58.329 33.333 11.31 0.00 38.69 3.07
64 65 8.671921 GTCTGATTTGTATGAAATCTGTCATGT 58.328 33.333 11.31 0.00 38.69 3.21
65 66 9.234827 TCTGATTTGTATGAAATCTGTCATGTT 57.765 29.630 11.31 0.00 38.69 2.71
66 67 9.850628 CTGATTTGTATGAAATCTGTCATGTTT 57.149 29.630 11.31 0.00 38.69 2.83
80 81 8.158169 TCTGTCATGTTTATATGAAATCCAGC 57.842 34.615 0.00 0.00 38.69 4.85
81 82 7.229306 TCTGTCATGTTTATATGAAATCCAGCC 59.771 37.037 0.00 0.00 38.69 4.85
82 83 6.017192 TGTCATGTTTATATGAAATCCAGCCG 60.017 38.462 0.00 0.00 38.69 5.52
83 84 6.204688 GTCATGTTTATATGAAATCCAGCCGA 59.795 38.462 0.00 0.00 38.69 5.54
84 85 6.427853 TCATGTTTATATGAAATCCAGCCGAG 59.572 38.462 0.00 0.00 34.32 4.63
85 86 5.680619 TGTTTATATGAAATCCAGCCGAGT 58.319 37.500 0.00 0.00 0.00 4.18
86 87 6.119536 TGTTTATATGAAATCCAGCCGAGTT 58.880 36.000 0.00 0.00 0.00 3.01
87 88 6.601613 TGTTTATATGAAATCCAGCCGAGTTT 59.398 34.615 0.00 0.00 0.00 2.66
88 89 6.618287 TTATATGAAATCCAGCCGAGTTTG 57.382 37.500 0.00 0.00 0.00 2.93
89 90 0.881118 TGAAATCCAGCCGAGTTTGC 59.119 50.000 0.00 0.00 0.00 3.68
90 91 0.881118 GAAATCCAGCCGAGTTTGCA 59.119 50.000 0.00 0.00 0.00 4.08
91 92 1.474077 GAAATCCAGCCGAGTTTGCAT 59.526 47.619 0.00 0.00 0.00 3.96
92 93 0.813184 AATCCAGCCGAGTTTGCATG 59.187 50.000 0.00 0.00 0.00 4.06
93 94 0.035152 ATCCAGCCGAGTTTGCATGA 60.035 50.000 0.00 0.00 0.00 3.07
94 95 0.250684 TCCAGCCGAGTTTGCATGAA 60.251 50.000 0.00 0.00 0.00 2.57
95 96 0.813184 CCAGCCGAGTTTGCATGAAT 59.187 50.000 0.00 0.00 0.00 2.57
96 97 1.203052 CCAGCCGAGTTTGCATGAATT 59.797 47.619 0.00 0.00 0.00 2.17
97 98 2.353011 CCAGCCGAGTTTGCATGAATTT 60.353 45.455 0.00 0.00 0.00 1.82
98 99 2.919229 CAGCCGAGTTTGCATGAATTTC 59.081 45.455 0.00 0.00 0.00 2.17
99 100 2.557924 AGCCGAGTTTGCATGAATTTCA 59.442 40.909 0.75 0.75 0.00 2.69
100 101 3.194116 AGCCGAGTTTGCATGAATTTCAT 59.806 39.130 6.06 6.06 37.65 2.57
101 102 3.549070 GCCGAGTTTGCATGAATTTCATC 59.451 43.478 8.95 5.62 34.28 2.92
102 103 4.107622 CCGAGTTTGCATGAATTTCATCC 58.892 43.478 8.95 0.95 34.28 3.51
103 104 3.787634 CGAGTTTGCATGAATTTCATCCG 59.212 43.478 8.95 1.10 34.28 4.18
104 105 4.672542 CGAGTTTGCATGAATTTCATCCGT 60.673 41.667 8.95 0.00 34.28 4.69
105 106 5.138125 AGTTTGCATGAATTTCATCCGTT 57.862 34.783 8.95 0.00 34.28 4.44
106 107 5.540911 AGTTTGCATGAATTTCATCCGTTT 58.459 33.333 8.95 0.00 34.28 3.60
107 108 5.406175 AGTTTGCATGAATTTCATCCGTTTG 59.594 36.000 8.95 0.44 34.28 2.93
108 109 3.847542 TGCATGAATTTCATCCGTTTGG 58.152 40.909 8.95 0.00 34.28 3.28
109 110 3.257873 TGCATGAATTTCATCCGTTTGGT 59.742 39.130 8.95 0.00 34.28 3.67
110 111 4.244862 GCATGAATTTCATCCGTTTGGTT 58.755 39.130 8.95 0.00 34.28 3.67
111 112 4.690280 GCATGAATTTCATCCGTTTGGTTT 59.310 37.500 8.95 0.00 34.28 3.27
112 113 5.179182 GCATGAATTTCATCCGTTTGGTTTT 59.821 36.000 8.95 0.00 34.28 2.43
113 114 6.367422 GCATGAATTTCATCCGTTTGGTTTTA 59.633 34.615 8.95 0.00 34.28 1.52
114 115 7.095439 GCATGAATTTCATCCGTTTGGTTTTAA 60.095 33.333 8.95 0.00 34.28 1.52
115 116 8.768955 CATGAATTTCATCCGTTTGGTTTTAAA 58.231 29.630 8.95 0.00 34.28 1.52
116 117 8.718102 TGAATTTCATCCGTTTGGTTTTAAAA 57.282 26.923 0.00 0.00 36.30 1.52
117 118 9.162764 TGAATTTCATCCGTTTGGTTTTAAAAA 57.837 25.926 1.31 0.00 36.30 1.94
118 119 9.644993 GAATTTCATCCGTTTGGTTTTAAAAAG 57.355 29.630 1.31 0.00 36.30 2.27
119 120 8.950208 ATTTCATCCGTTTGGTTTTAAAAAGA 57.050 26.923 1.31 0.00 36.30 2.52
120 121 7.995463 TTCATCCGTTTGGTTTTAAAAAGAG 57.005 32.000 1.31 0.00 36.30 2.85
121 122 7.102847 TCATCCGTTTGGTTTTAAAAAGAGT 57.897 32.000 1.31 0.00 36.30 3.24
122 123 7.548967 TCATCCGTTTGGTTTTAAAAAGAGTT 58.451 30.769 1.31 0.00 36.30 3.01
123 124 8.035984 TCATCCGTTTGGTTTTAAAAAGAGTTT 58.964 29.630 1.31 0.00 36.30 2.66
124 125 7.583860 TCCGTTTGGTTTTAAAAAGAGTTTG 57.416 32.000 1.31 0.00 36.30 2.93
125 126 6.091034 TCCGTTTGGTTTTAAAAAGAGTTTGC 59.909 34.615 1.31 0.00 36.30 3.68
126 127 6.128526 CCGTTTGGTTTTAAAAAGAGTTTGCA 60.129 34.615 1.31 0.00 0.00 4.08
127 128 7.291567 CGTTTGGTTTTAAAAAGAGTTTGCAA 58.708 30.769 1.31 0.00 0.00 4.08
128 129 7.960195 CGTTTGGTTTTAAAAAGAGTTTGCAAT 59.040 29.630 0.00 0.00 0.00 3.56
131 132 9.877178 TTGGTTTTAAAAAGAGTTTGCAATAGA 57.123 25.926 0.00 0.00 0.00 1.98
135 136 9.487790 TTTTAAAAAGAGTTTGCAATAGATGGG 57.512 29.630 0.00 0.00 0.00 4.00
136 137 4.725790 AAAGAGTTTGCAATAGATGGGC 57.274 40.909 0.00 0.00 0.00 5.36
137 138 2.292267 AGAGTTTGCAATAGATGGGCG 58.708 47.619 0.00 0.00 0.00 6.13
138 139 2.092968 AGAGTTTGCAATAGATGGGCGA 60.093 45.455 0.00 0.00 0.00 5.54
139 140 2.289002 GAGTTTGCAATAGATGGGCGAG 59.711 50.000 0.00 0.00 0.00 5.03
140 141 1.334869 GTTTGCAATAGATGGGCGAGG 59.665 52.381 0.00 0.00 0.00 4.63
141 142 0.179020 TTGCAATAGATGGGCGAGGG 60.179 55.000 0.00 0.00 0.00 4.30
142 143 1.344953 TGCAATAGATGGGCGAGGGT 61.345 55.000 0.00 0.00 0.00 4.34
143 144 0.179018 GCAATAGATGGGCGAGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
144 145 1.597742 CAATAGATGGGCGAGGGTTG 58.402 55.000 0.00 0.00 0.00 3.77
145 146 0.474184 AATAGATGGGCGAGGGTTGG 59.526 55.000 0.00 0.00 0.00 3.77
146 147 0.399949 ATAGATGGGCGAGGGTTGGA 60.400 55.000 0.00 0.00 0.00 3.53
147 148 0.399949 TAGATGGGCGAGGGTTGGAT 60.400 55.000 0.00 0.00 0.00 3.41
148 149 1.526917 GATGGGCGAGGGTTGGATG 60.527 63.158 0.00 0.00 0.00 3.51
149 150 2.965716 GATGGGCGAGGGTTGGATGG 62.966 65.000 0.00 0.00 0.00 3.51
150 151 3.728373 GGGCGAGGGTTGGATGGT 61.728 66.667 0.00 0.00 0.00 3.55
151 152 2.438434 GGCGAGGGTTGGATGGTG 60.438 66.667 0.00 0.00 0.00 4.17
152 153 2.438434 GCGAGGGTTGGATGGTGG 60.438 66.667 0.00 0.00 0.00 4.61
153 154 3.077907 CGAGGGTTGGATGGTGGT 58.922 61.111 0.00 0.00 0.00 4.16
154 155 1.078426 CGAGGGTTGGATGGTGGTC 60.078 63.158 0.00 0.00 0.00 4.02
155 156 1.553690 CGAGGGTTGGATGGTGGTCT 61.554 60.000 0.00 0.00 0.00 3.85
156 157 0.253327 GAGGGTTGGATGGTGGTCTC 59.747 60.000 0.00 0.00 0.00 3.36
157 158 1.208165 AGGGTTGGATGGTGGTCTCC 61.208 60.000 0.00 0.00 0.00 3.71
158 159 1.303282 GGTTGGATGGTGGTCTCCC 59.697 63.158 0.00 0.00 0.00 4.30
159 160 1.078426 GTTGGATGGTGGTCTCCCG 60.078 63.158 0.00 0.00 0.00 5.14
160 161 2.966732 TTGGATGGTGGTCTCCCGC 61.967 63.158 0.00 0.00 40.75 6.13
161 162 3.399181 GGATGGTGGTCTCCCGCA 61.399 66.667 0.00 0.00 43.45 5.69
162 163 2.746375 GGATGGTGGTCTCCCGCAT 61.746 63.158 0.00 0.00 43.45 4.73
163 164 1.227674 GATGGTGGTCTCCCGCATC 60.228 63.158 0.00 0.00 43.45 3.91
164 165 2.666596 GATGGTGGTCTCCCGCATCC 62.667 65.000 0.00 0.00 43.45 3.51
165 166 4.530857 GGTGGTCTCCCGCATCCG 62.531 72.222 0.00 0.00 43.45 4.18
166 167 3.771160 GTGGTCTCCCGCATCCGT 61.771 66.667 0.00 0.00 41.16 4.69
167 168 3.770040 TGGTCTCCCGCATCCGTG 61.770 66.667 0.00 0.00 0.00 4.94
168 169 3.771160 GGTCTCCCGCATCCGTGT 61.771 66.667 0.00 0.00 0.00 4.49
169 170 2.202756 GTCTCCCGCATCCGTGTC 60.203 66.667 0.00 0.00 0.00 3.67
170 171 3.458163 TCTCCCGCATCCGTGTCC 61.458 66.667 0.00 0.00 0.00 4.02
171 172 4.873129 CTCCCGCATCCGTGTCCG 62.873 72.222 0.00 0.00 0.00 4.79
173 174 4.444838 CCCGCATCCGTGTCCGAA 62.445 66.667 0.00 0.00 35.63 4.30
174 175 2.202878 CCGCATCCGTGTCCGAAT 60.203 61.111 0.00 0.00 35.63 3.34
175 176 2.525248 CCGCATCCGTGTCCGAATG 61.525 63.158 0.00 0.00 35.63 2.67
176 177 2.525248 CGCATCCGTGTCCGAATGG 61.525 63.158 0.00 0.00 35.63 3.16
177 178 2.180204 GCATCCGTGTCCGAATGGG 61.180 63.158 0.00 0.00 35.63 4.00
178 179 1.523711 CATCCGTGTCCGAATGGGG 60.524 63.158 0.00 0.00 35.63 4.96
179 180 2.742116 ATCCGTGTCCGAATGGGGG 61.742 63.158 0.00 0.00 35.63 5.40
180 181 3.395702 CCGTGTCCGAATGGGGGA 61.396 66.667 0.00 0.00 35.63 4.81
181 182 2.186903 CGTGTCCGAATGGGGGAG 59.813 66.667 0.00 0.00 33.31 4.30
182 183 2.590092 GTGTCCGAATGGGGGAGG 59.410 66.667 0.00 0.00 33.31 4.30
183 184 1.993391 GTGTCCGAATGGGGGAGGA 60.993 63.158 0.00 0.00 33.31 3.71
184 185 1.229690 TGTCCGAATGGGGGAGGAA 60.230 57.895 0.00 0.00 33.31 3.36
185 186 1.223763 GTCCGAATGGGGGAGGAAC 59.776 63.158 0.00 0.00 33.31 3.62
186 187 1.082206 TCCGAATGGGGGAGGAACT 59.918 57.895 0.00 0.00 37.82 3.01
187 188 0.549169 TCCGAATGGGGGAGGAACTT 60.549 55.000 0.00 0.00 35.39 2.66
188 189 0.331616 CCGAATGGGGGAGGAACTTT 59.668 55.000 0.00 0.00 41.55 2.66
189 190 1.463674 CGAATGGGGGAGGAACTTTG 58.536 55.000 0.00 0.00 41.55 2.77
190 191 1.186200 GAATGGGGGAGGAACTTTGC 58.814 55.000 0.00 0.00 41.55 3.68
191 192 0.486879 AATGGGGGAGGAACTTTGCA 59.513 50.000 0.00 0.00 41.55 4.08
192 193 0.040204 ATGGGGGAGGAACTTTGCAG 59.960 55.000 0.00 0.00 41.55 4.41
193 194 1.304464 GGGGGAGGAACTTTGCAGG 60.304 63.158 0.00 0.00 41.55 4.85
194 195 1.460699 GGGGAGGAACTTTGCAGGT 59.539 57.895 0.00 0.00 41.55 4.00
195 196 0.895559 GGGGAGGAACTTTGCAGGTG 60.896 60.000 0.00 0.00 41.55 4.00
196 197 0.895559 GGGAGGAACTTTGCAGGTGG 60.896 60.000 0.00 0.00 41.55 4.61
197 198 1.527433 GGAGGAACTTTGCAGGTGGC 61.527 60.000 0.00 0.00 41.55 5.01
198 199 1.527433 GAGGAACTTTGCAGGTGGCC 61.527 60.000 0.00 0.00 41.55 5.36
199 200 2.644992 GAACTTTGCAGGTGGCCG 59.355 61.111 0.00 0.00 43.89 6.13
200 201 2.123897 AACTTTGCAGGTGGCCGT 60.124 55.556 0.00 0.00 43.89 5.68
201 202 1.734388 GAACTTTGCAGGTGGCCGTT 61.734 55.000 0.00 0.00 43.89 4.44
202 203 2.015227 AACTTTGCAGGTGGCCGTTG 62.015 55.000 0.00 0.00 43.89 4.10
203 204 3.211564 CTTTGCAGGTGGCCGTTGG 62.212 63.158 0.00 0.00 43.89 3.77
204 205 3.723097 TTTGCAGGTGGCCGTTGGA 62.723 57.895 0.00 0.00 43.89 3.53
205 206 4.641645 TGCAGGTGGCCGTTGGAG 62.642 66.667 0.00 0.00 43.89 3.86
206 207 4.329545 GCAGGTGGCCGTTGGAGA 62.330 66.667 0.00 0.00 36.11 3.71
207 208 2.671070 CAGGTGGCCGTTGGAGAT 59.329 61.111 0.00 0.00 0.00 2.75
208 209 1.746615 CAGGTGGCCGTTGGAGATG 60.747 63.158 0.00 0.00 0.00 2.90
209 210 3.134127 GGTGGCCGTTGGAGATGC 61.134 66.667 0.00 0.00 0.00 3.91
210 211 3.134127 GTGGCCGTTGGAGATGCC 61.134 66.667 0.00 0.00 44.27 4.40
211 212 4.424711 TGGCCGTTGGAGATGCCC 62.425 66.667 0.00 0.00 43.35 5.36
214 215 1.223487 GCCGTTGGAGATGCCCTAA 59.777 57.895 0.00 0.00 34.97 2.69
223 224 5.233083 TGGAGATGCCCTAATAGAATGTG 57.767 43.478 0.00 0.00 34.97 3.21
225 226 4.566488 GGAGATGCCCTAATAGAATGTGGG 60.566 50.000 0.00 0.00 40.74 4.61
231 232 4.179133 CCCTAATAGAATGTGGGGGAGAT 58.821 47.826 0.00 0.00 34.71 2.75
236 237 0.753111 GAATGTGGGGGAGATGTGGC 60.753 60.000 0.00 0.00 0.00 5.01
237 238 1.508667 AATGTGGGGGAGATGTGGCA 61.509 55.000 0.00 0.00 0.00 4.92
240 241 3.731728 GGGGGAGATGTGGCAGCA 61.732 66.667 0.00 0.00 0.00 4.41
252 256 1.441729 GGCAGCAGAGCCGTACATA 59.558 57.895 0.00 0.00 46.12 2.29
255 259 1.269778 GCAGCAGAGCCGTACATATCA 60.270 52.381 0.00 0.00 0.00 2.15
263 267 6.216569 CAGAGCCGTACATATCATTGTAACT 58.783 40.000 0.00 0.00 34.05 2.24
272 276 6.653020 ACATATCATTGTAACTTGCCTCTGA 58.347 36.000 0.00 0.00 0.00 3.27
282 286 2.175202 CTTGCCTCTGACAGTAGTCCT 58.825 52.381 1.59 0.00 44.33 3.85
293 297 3.634910 GACAGTAGTCCTTCCTCTCATCC 59.365 52.174 0.00 0.00 38.89 3.51
306 310 4.072839 CCTCTCATCCAATCATCATGGTG 58.927 47.826 0.00 0.00 39.09 4.17
308 312 2.557056 CTCATCCAATCATCATGGTGGC 59.443 50.000 6.03 0.00 39.09 5.01
310 314 2.759839 TCCAATCATCATGGTGGCAT 57.240 45.000 6.03 0.00 39.09 4.40
338 342 8.108551 AGCCTGCTATTTTTCTGATAATCATC 57.891 34.615 0.00 0.00 0.00 2.92
340 344 7.806960 GCCTGCTATTTTTCTGATAATCATCAC 59.193 37.037 0.00 0.00 36.22 3.06
352 356 8.215736 TCTGATAATCATCACCTTCATGTTCAT 58.784 33.333 0.00 0.00 36.22 2.57
357 361 3.251479 TCACCTTCATGTTCATCTCCG 57.749 47.619 0.00 0.00 0.00 4.63
360 364 3.806521 CACCTTCATGTTCATCTCCGATC 59.193 47.826 0.00 0.00 0.00 3.69
362 366 3.243535 CCTTCATGTTCATCTCCGATCGA 60.244 47.826 18.66 1.60 0.00 3.59
367 371 2.294512 TGTTCATCTCCGATCGATCCTG 59.705 50.000 18.66 11.11 0.00 3.86
371 375 1.175347 TCTCCGATCGATCCTGCAGG 61.175 60.000 27.87 27.87 0.00 4.85
420 424 9.862371 CAAATGAACTATGAGTGAACTACTACT 57.138 33.333 0.00 0.00 40.53 2.57
431 435 8.255206 TGAGTGAACTACTACTGAAGAAACAAA 58.745 33.333 0.00 0.00 40.53 2.83
458 462 5.007234 TCACAATTTAAGGAGTGACAACGTG 59.993 40.000 0.00 0.00 36.20 4.49
466 470 2.961526 AGTGACAACGTGTCTCTGTT 57.038 45.000 16.46 0.91 45.90 3.16
474 478 4.214545 ACAACGTGTCTCTGTTTTCAACAA 59.785 37.500 0.00 0.00 41.61 2.83
475 479 5.106317 ACAACGTGTCTCTGTTTTCAACAAT 60.106 36.000 0.00 0.00 41.61 2.71
481 485 6.854892 GTGTCTCTGTTTTCAACAATCATGAG 59.145 38.462 0.09 0.00 41.61 2.90
496 500 5.664294 ATCATGAGTTTGCTATTTGCCAA 57.336 34.783 0.09 0.00 42.00 4.52
498 502 4.280425 TCATGAGTTTGCTATTTGCCAACA 59.720 37.500 9.10 0.00 46.10 3.33
530 534 5.347620 TGGGTATGCGTTAGTATTGACTT 57.652 39.130 0.00 0.00 37.10 3.01
535 539 4.398549 TGCGTTAGTATTGACTTTGTGC 57.601 40.909 0.00 0.00 37.10 4.57
547 551 3.019564 GACTTTGTGCATCCCAGCTATT 58.980 45.455 0.00 0.00 34.99 1.73
560 564 2.307768 CAGCTATTCAGAGACCGGGTA 58.692 52.381 6.32 0.00 0.00 3.69
561 565 2.894126 CAGCTATTCAGAGACCGGGTAT 59.106 50.000 6.32 0.00 0.00 2.73
567 571 0.537188 CAGAGACCGGGTATGTGCTT 59.463 55.000 6.32 0.00 0.00 3.91
594 598 5.106197 TGCGTTTGTATCATCTTGATGCTTT 60.106 36.000 5.78 0.00 39.71 3.51
624 634 8.348285 TGAGTGAATAAAATCCACCCTTTAAG 57.652 34.615 0.00 0.00 0.00 1.85
660 673 0.842635 CCTGGCCTAGCAGGAGAAAT 59.157 55.000 10.11 0.00 40.95 2.17
692 705 1.017701 CACCGTCCCGACCTTTAAGC 61.018 60.000 0.00 0.00 0.00 3.09
719 732 7.145323 CAGAAGAAAACGGTTATTTGACCAAT 58.855 34.615 0.00 0.00 39.78 3.16
725 738 4.145807 ACGGTTATTTGACCAATGGTTCA 58.854 39.130 6.30 3.31 39.78 3.18
726 739 4.585162 ACGGTTATTTGACCAATGGTTCAA 59.415 37.500 6.30 9.60 39.78 2.69
730 743 6.423604 GGTTATTTGACCAATGGTTCAAACTG 59.576 38.462 22.63 0.00 39.57 3.16
733 746 2.616376 TGACCAATGGTTCAAACTGTCG 59.384 45.455 6.30 0.00 35.25 4.35
744 757 5.336744 GTTCAAACTGTCGGTCATCAAAAA 58.663 37.500 0.00 0.00 0.00 1.94
747 760 5.298026 TCAAACTGTCGGTCATCAAAAATCA 59.702 36.000 0.00 0.00 0.00 2.57
748 761 5.766150 AACTGTCGGTCATCAAAAATCAA 57.234 34.783 0.00 0.00 0.00 2.57
852 867 5.428184 ACACATTTTTGTTTTCAAGGGGA 57.572 34.783 0.00 0.00 41.09 4.81
854 869 6.422333 ACACATTTTTGTTTTCAAGGGGAAT 58.578 32.000 0.00 0.00 41.09 3.01
869 884 5.466127 AGGGGAATAAAAAGCCATAGACA 57.534 39.130 0.00 0.00 0.00 3.41
882 897 8.713708 AAAGCCATAGACATGTATACTAGTCT 57.286 34.615 24.22 24.22 43.25 3.24
893 908 6.614694 TGTATACTAGTCTTTTTGGAGGCA 57.385 37.500 0.00 0.00 0.00 4.75
899 914 3.481453 AGTCTTTTTGGAGGCAAGTCTC 58.519 45.455 0.00 0.00 0.00 3.36
910 925 0.787183 GCAAGTCTCTGTGAGAACGC 59.213 55.000 0.00 0.00 40.59 4.84
935 950 4.451629 TCCTCGATGTGGAAGTAGTTTC 57.548 45.455 0.00 0.00 34.93 2.78
961 976 7.147976 GTGAAGTTTGCATACCATCTTCTTTT 58.852 34.615 3.47 0.00 36.56 2.27
962 977 7.653311 GTGAAGTTTGCATACCATCTTCTTTTT 59.347 33.333 3.47 0.00 36.56 1.94
963 978 8.855110 TGAAGTTTGCATACCATCTTCTTTTTA 58.145 29.630 3.47 0.00 36.56 1.52
964 979 9.860898 GAAGTTTGCATACCATCTTCTTTTTAT 57.139 29.630 3.47 0.00 34.69 1.40
1024 1041 6.311935 CACTAACATTTCCAGCCAATCAAATG 59.688 38.462 0.00 0.00 40.55 2.32
1029 1046 7.622713 ACATTTCCAGCCAATCAAATGATTTA 58.377 30.769 5.92 0.00 42.41 1.40
1063 1080 7.455058 TGGCTCTAATTAAGTGGAGTTGTTTA 58.545 34.615 16.20 0.00 0.00 2.01
1134 1151 4.870636 TCCAGCCAATCAAATAAGATGGT 58.129 39.130 0.00 0.00 0.00 3.55
1145 1162 9.851686 AATCAAATAAGATGGTTATGTAGCTCA 57.148 29.630 0.00 0.00 0.00 4.26
1218 1235 1.613437 ACGCTTGCTGGCTAATGTTTT 59.387 42.857 0.00 0.00 0.00 2.43
1315 1332 9.708222 CTGTCTTTCGTTATTGGAATATTGAAG 57.292 33.333 0.00 0.00 0.00 3.02
1366 1385 6.856895 TCATATGTAGCTATCCGAATGACTG 58.143 40.000 1.90 0.00 0.00 3.51
1374 1393 1.737838 TCCGAATGACTGGTGCATTC 58.262 50.000 0.00 0.00 45.01 2.67
1395 1415 2.487762 CGCAAGTTGCCTAGGAAATGAA 59.512 45.455 21.84 0.00 41.12 2.57
1443 1464 2.885135 TCTGCCCACATGAATGTCTT 57.115 45.000 0.00 0.00 39.39 3.01
1444 1465 2.439409 TCTGCCCACATGAATGTCTTG 58.561 47.619 0.00 0.00 39.39 3.02
1480 1501 6.882610 TTATCACAGATTTGCAGTTCACTT 57.117 33.333 0.00 0.00 0.00 3.16
1492 1513 5.270083 TGCAGTTCACTTAACACATTTTCG 58.730 37.500 0.00 0.00 40.83 3.46
1497 1518 7.373441 CAGTTCACTTAACACATTTTCGAAGAC 59.627 37.037 0.00 0.00 40.83 3.01
1516 1537 1.377333 GGCCTCACACACCTTAGCC 60.377 63.158 0.00 0.00 0.00 3.93
1538 1559 4.278669 CCTTAGCGAGTGGTATAGATGTGT 59.721 45.833 0.00 0.00 0.00 3.72
1547 1568 3.386726 TGGTATAGATGTGTACACCTGGC 59.613 47.826 22.91 9.55 0.00 4.85
1548 1569 3.244112 GGTATAGATGTGTACACCTGGCC 60.244 52.174 22.91 11.76 0.00 5.36
1554 1575 0.172803 GTGTACACCTGGCCTACTCG 59.827 60.000 15.42 0.00 0.00 4.18
1602 1623 6.046290 AGTACACCACTGGAATTAGGTAAC 57.954 41.667 0.71 0.00 35.62 2.50
1603 1624 5.783875 AGTACACCACTGGAATTAGGTAACT 59.216 40.000 0.71 0.00 43.96 2.24
1604 1625 6.295688 AGTACACCACTGGAATTAGGTAACTG 60.296 42.308 0.71 0.00 42.10 3.16
1923 1946 2.820787 GGTCGTCGATATCTCCCTGAAT 59.179 50.000 0.00 0.00 0.00 2.57
1960 1983 0.647410 CGTCAATCATGGACTGCGAC 59.353 55.000 0.00 0.00 33.11 5.19
1975 1998 1.026182 GCGACCCATCAACATGAGCA 61.026 55.000 0.00 0.00 30.57 4.26
2000 2029 1.121407 TCCGGCCAGTGGATCATAGG 61.121 60.000 15.20 6.03 0.00 2.57
2004 2033 1.490490 GGCCAGTGGATCATAGGTGAA 59.510 52.381 15.20 0.00 38.01 3.18
2014 2043 1.751351 TCATAGGTGAAGCTGAGACCG 59.249 52.381 0.00 0.00 34.72 4.79
2068 2097 2.106511 CCGGGGTCCAATGAGTTCATAT 59.893 50.000 0.00 0.00 35.10 1.78
2165 2201 0.455410 TTTGGTGATGGCATTAGCGC 59.545 50.000 15.38 0.00 43.41 5.92
2284 2752 1.070601 TCAAGCAGCTCAACTACAGCA 59.929 47.619 0.00 0.00 39.56 4.41
2383 2851 2.420687 GAGGTGGTCATGAACCTGGATC 60.421 54.545 21.38 5.94 46.97 3.36
2384 2852 5.571835 GAGGTGGTCATGAACCTGGATCC 62.572 56.522 21.38 4.20 46.97 3.36
2444 2916 2.499685 GGTCCCCGTGATTCTCGG 59.500 66.667 17.99 17.99 46.49 4.63
2454 2926 1.259142 TGATTCTCGGGTGGGCGTTA 61.259 55.000 0.00 0.00 0.00 3.18
2472 2944 2.869801 GTTAGCACACAACACAGCAGTA 59.130 45.455 0.00 0.00 0.00 2.74
2475 2947 3.329386 AGCACACAACACAGCAGTATAG 58.671 45.455 0.00 0.00 0.00 1.31
2565 3037 1.531149 AGCGTCGGAAACACAATTGAG 59.469 47.619 13.59 6.93 0.00 3.02
2593 3071 3.102097 GCTATTCGTGCCACTGCC 58.898 61.111 0.00 0.00 36.33 4.85
2663 3141 4.211164 TGAGTTTACAACTTGACATGCGAG 59.789 41.667 0.00 0.00 43.03 5.03
2666 3144 5.065988 AGTTTACAACTTGACATGCGAGTTT 59.934 36.000 15.80 11.63 46.80 2.66
2690 3168 8.736751 TTCGTAAACTTGATTCTATTTTTGCC 57.263 30.769 0.00 0.00 0.00 4.52
2776 3254 2.882876 GGCGTCTGCGAGGAACTA 59.117 61.111 0.00 0.00 44.10 2.24
2852 3330 2.528743 GGTGCCTGCATCATCGACG 61.529 63.158 0.00 0.00 0.00 5.12
2860 3338 0.877649 GCATCATCGACGCTGTGGAT 60.878 55.000 0.00 1.59 31.45 3.41
2880 3358 4.826183 GGATACAATCCGAGGTACACTAGT 59.174 45.833 0.00 0.00 40.13 2.57
2969 3447 1.207089 TCCACCTAGGAGTGAAATGCG 59.793 52.381 17.98 0.00 43.07 4.73
3019 3497 7.102346 TGATCGATTTTGGCCATAAAATTGTT 58.898 30.769 21.79 16.66 39.60 2.83
3047 3525 7.639113 TTGATCAAATAAGGCTAAAACCGAT 57.361 32.000 5.45 0.00 33.69 4.18
3049 3527 6.262273 TGATCAAATAAGGCTAAAACCGATCC 59.738 38.462 0.00 0.00 33.69 3.36
3098 3576 2.691409 TTGTCAGCCTCCCTTATTCG 57.309 50.000 0.00 0.00 0.00 3.34
3112 3590 5.048507 CCCTTATTCGGCTAGTGAACTAAC 58.951 45.833 2.26 0.00 0.00 2.34
3113 3591 5.048507 CCTTATTCGGCTAGTGAACTAACC 58.951 45.833 0.56 0.56 32.66 2.85
3141 3622 1.422402 TGCCGAAAAAGAGTTACCCCT 59.578 47.619 0.00 0.00 0.00 4.79
3214 3696 1.580845 GGAAGCAGCACAATCACGCT 61.581 55.000 0.00 0.00 39.66 5.07
3220 3702 2.730069 CAGCACAATCACGCTCAAAAA 58.270 42.857 0.00 0.00 35.96 1.94
3293 3777 1.523758 AAACAAAGAAGCCTCGCGAT 58.476 45.000 10.36 0.00 0.00 4.58
3481 4016 0.042731 TTCTCCCGATCCCAACCTCT 59.957 55.000 0.00 0.00 0.00 3.69
3496 4031 2.575713 ACCTCTACCTCAGGTACTCCT 58.424 52.381 0.00 0.00 42.91 3.69
3526 4062 1.599797 CAAACCGACCACCACCCTC 60.600 63.158 0.00 0.00 0.00 4.30
3562 4098 4.803426 GCTCCCCACGCTGTCTCG 62.803 72.222 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.872483 GGTCACATTTTGGTCATATTTTCAACT 59.128 33.333 0.00 0.00 0.00 3.16
6 7 7.655328 TGGTCACATTTTGGTCATATTTTCAAC 59.345 33.333 0.00 0.00 0.00 3.18
7 8 7.730084 TGGTCACATTTTGGTCATATTTTCAA 58.270 30.769 0.00 0.00 0.00 2.69
8 9 7.295322 TGGTCACATTTTGGTCATATTTTCA 57.705 32.000 0.00 0.00 0.00 2.69
9 10 8.776376 AATGGTCACATTTTGGTCATATTTTC 57.224 30.769 0.00 0.00 44.69 2.29
24 25 6.819284 ACAAATCAGACAAAAATGGTCACAT 58.181 32.000 0.00 0.00 39.54 3.21
25 26 6.219417 ACAAATCAGACAAAAATGGTCACA 57.781 33.333 0.00 0.00 37.74 3.58
26 27 8.081633 TCATACAAATCAGACAAAAATGGTCAC 58.918 33.333 0.00 0.00 37.74 3.67
27 28 8.175925 TCATACAAATCAGACAAAAATGGTCA 57.824 30.769 0.00 0.00 37.74 4.02
28 29 9.474920 TTTCATACAAATCAGACAAAAATGGTC 57.525 29.630 0.00 0.00 35.50 4.02
34 35 9.897744 GACAGATTTCATACAAATCAGACAAAA 57.102 29.630 9.21 0.00 38.70 2.44
35 36 9.065798 TGACAGATTTCATACAAATCAGACAAA 57.934 29.630 9.21 0.00 38.70 2.83
36 37 8.620116 TGACAGATTTCATACAAATCAGACAA 57.380 30.769 9.21 0.00 38.70 3.18
37 38 8.671028 CATGACAGATTTCATACAAATCAGACA 58.329 33.333 9.21 7.98 38.70 3.41
38 39 8.671921 ACATGACAGATTTCATACAAATCAGAC 58.328 33.333 0.00 3.41 38.70 3.51
39 40 8.797350 ACATGACAGATTTCATACAAATCAGA 57.203 30.769 0.00 0.00 38.70 3.27
40 41 9.850628 AAACATGACAGATTTCATACAAATCAG 57.149 29.630 0.00 4.41 38.70 2.90
54 55 8.790718 GCTGGATTTCATATAAACATGACAGAT 58.209 33.333 0.00 0.00 34.69 2.90
55 56 7.229306 GGCTGGATTTCATATAAACATGACAGA 59.771 37.037 0.00 0.00 34.69 3.41
56 57 7.365741 GGCTGGATTTCATATAAACATGACAG 58.634 38.462 0.00 0.00 34.69 3.51
57 58 6.017192 CGGCTGGATTTCATATAAACATGACA 60.017 38.462 0.00 0.00 34.69 3.58
58 59 6.204688 TCGGCTGGATTTCATATAAACATGAC 59.795 38.462 0.00 0.00 34.69 3.06
59 60 6.295249 TCGGCTGGATTTCATATAAACATGA 58.705 36.000 0.00 0.00 33.10 3.07
60 61 6.205464 ACTCGGCTGGATTTCATATAAACATG 59.795 38.462 0.00 0.00 0.00 3.21
61 62 6.299141 ACTCGGCTGGATTTCATATAAACAT 58.701 36.000 0.00 0.00 0.00 2.71
62 63 5.680619 ACTCGGCTGGATTTCATATAAACA 58.319 37.500 0.00 0.00 0.00 2.83
63 64 6.619801 AACTCGGCTGGATTTCATATAAAC 57.380 37.500 0.00 0.00 0.00 2.01
64 65 6.459573 GCAAACTCGGCTGGATTTCATATAAA 60.460 38.462 0.00 0.00 0.00 1.40
65 66 5.008613 GCAAACTCGGCTGGATTTCATATAA 59.991 40.000 0.00 0.00 0.00 0.98
66 67 4.515191 GCAAACTCGGCTGGATTTCATATA 59.485 41.667 0.00 0.00 0.00 0.86
67 68 3.316308 GCAAACTCGGCTGGATTTCATAT 59.684 43.478 0.00 0.00 0.00 1.78
68 69 2.682856 GCAAACTCGGCTGGATTTCATA 59.317 45.455 0.00 0.00 0.00 2.15
69 70 1.474077 GCAAACTCGGCTGGATTTCAT 59.526 47.619 0.00 0.00 0.00 2.57
70 71 0.881118 GCAAACTCGGCTGGATTTCA 59.119 50.000 0.00 0.00 0.00 2.69
71 72 0.881118 TGCAAACTCGGCTGGATTTC 59.119 50.000 0.00 0.00 0.00 2.17
72 73 1.203052 CATGCAAACTCGGCTGGATTT 59.797 47.619 0.00 0.00 0.00 2.17
73 74 0.813184 CATGCAAACTCGGCTGGATT 59.187 50.000 0.00 0.00 0.00 3.01
74 75 0.035152 TCATGCAAACTCGGCTGGAT 60.035 50.000 0.00 0.00 0.00 3.41
75 76 0.250684 TTCATGCAAACTCGGCTGGA 60.251 50.000 0.00 0.00 0.00 3.86
76 77 0.813184 ATTCATGCAAACTCGGCTGG 59.187 50.000 0.00 0.00 0.00 4.85
77 78 2.642139 AATTCATGCAAACTCGGCTG 57.358 45.000 0.00 0.00 0.00 4.85
78 79 2.557924 TGAAATTCATGCAAACTCGGCT 59.442 40.909 0.00 0.00 0.00 5.52
79 80 2.945278 TGAAATTCATGCAAACTCGGC 58.055 42.857 0.00 0.00 0.00 5.54
80 81 4.107622 GGATGAAATTCATGCAAACTCGG 58.892 43.478 20.18 0.00 43.55 4.63
81 82 3.787634 CGGATGAAATTCATGCAAACTCG 59.212 43.478 23.55 5.98 44.18 4.18
82 83 4.737054 ACGGATGAAATTCATGCAAACTC 58.263 39.130 23.55 5.32 44.18 3.01
83 84 4.789012 ACGGATGAAATTCATGCAAACT 57.211 36.364 23.55 3.84 44.18 2.66
84 85 5.389725 CCAAACGGATGAAATTCATGCAAAC 60.390 40.000 23.55 5.81 44.18 2.93
85 86 4.689812 CCAAACGGATGAAATTCATGCAAA 59.310 37.500 23.55 0.00 44.18 3.68
86 87 4.244066 CCAAACGGATGAAATTCATGCAA 58.756 39.130 23.55 0.00 44.18 4.08
87 88 3.257873 ACCAAACGGATGAAATTCATGCA 59.742 39.130 23.55 0.00 44.18 3.96
88 89 3.848726 ACCAAACGGATGAAATTCATGC 58.151 40.909 13.82 15.08 41.12 4.06
89 90 6.783892 AAAACCAAACGGATGAAATTCATG 57.216 33.333 13.82 2.52 37.20 3.07
90 91 8.894768 TTTAAAACCAAACGGATGAAATTCAT 57.105 26.923 8.39 8.39 40.34 2.57
91 92 8.718102 TTTTAAAACCAAACGGATGAAATTCA 57.282 26.923 0.00 0.00 0.00 2.57
92 93 9.644993 CTTTTTAAAACCAAACGGATGAAATTC 57.355 29.630 0.00 0.00 0.00 2.17
93 94 9.384764 TCTTTTTAAAACCAAACGGATGAAATT 57.615 25.926 0.00 0.00 0.00 1.82
94 95 8.950208 TCTTTTTAAAACCAAACGGATGAAAT 57.050 26.923 0.00 0.00 0.00 2.17
95 96 8.035984 ACTCTTTTTAAAACCAAACGGATGAAA 58.964 29.630 0.00 0.00 0.00 2.69
96 97 7.548967 ACTCTTTTTAAAACCAAACGGATGAA 58.451 30.769 0.00 0.00 0.00 2.57
97 98 7.102847 ACTCTTTTTAAAACCAAACGGATGA 57.897 32.000 0.00 0.00 0.00 2.92
98 99 7.764695 AACTCTTTTTAAAACCAAACGGATG 57.235 32.000 0.00 0.00 0.00 3.51
99 100 7.201574 GCAAACTCTTTTTAAAACCAAACGGAT 60.202 33.333 0.00 0.00 0.00 4.18
100 101 6.091034 GCAAACTCTTTTTAAAACCAAACGGA 59.909 34.615 0.00 0.00 0.00 4.69
101 102 6.128526 TGCAAACTCTTTTTAAAACCAAACGG 60.129 34.615 0.00 0.00 0.00 4.44
102 103 6.822506 TGCAAACTCTTTTTAAAACCAAACG 58.177 32.000 0.00 0.00 0.00 3.60
105 106 9.877178 TCTATTGCAAACTCTTTTTAAAACCAA 57.123 25.926 1.71 0.00 0.00 3.67
109 110 9.487790 CCCATCTATTGCAAACTCTTTTTAAAA 57.512 29.630 1.71 0.00 0.00 1.52
110 111 7.602265 GCCCATCTATTGCAAACTCTTTTTAAA 59.398 33.333 1.71 0.00 0.00 1.52
111 112 7.096551 GCCCATCTATTGCAAACTCTTTTTAA 58.903 34.615 1.71 0.00 0.00 1.52
112 113 6.624861 CGCCCATCTATTGCAAACTCTTTTTA 60.625 38.462 1.71 0.00 0.00 1.52
113 114 5.482006 GCCCATCTATTGCAAACTCTTTTT 58.518 37.500 1.71 0.00 0.00 1.94
114 115 4.380867 CGCCCATCTATTGCAAACTCTTTT 60.381 41.667 1.71 0.00 0.00 2.27
115 116 3.129287 CGCCCATCTATTGCAAACTCTTT 59.871 43.478 1.71 0.00 0.00 2.52
116 117 2.684881 CGCCCATCTATTGCAAACTCTT 59.315 45.455 1.71 0.00 0.00 2.85
117 118 2.092968 TCGCCCATCTATTGCAAACTCT 60.093 45.455 1.71 0.00 0.00 3.24
118 119 2.288666 TCGCCCATCTATTGCAAACTC 58.711 47.619 1.71 0.00 0.00 3.01
119 120 2.292267 CTCGCCCATCTATTGCAAACT 58.708 47.619 1.71 0.00 0.00 2.66
120 121 1.334869 CCTCGCCCATCTATTGCAAAC 59.665 52.381 1.71 0.00 0.00 2.93
121 122 1.679139 CCTCGCCCATCTATTGCAAA 58.321 50.000 1.71 0.00 0.00 3.68
122 123 0.179020 CCCTCGCCCATCTATTGCAA 60.179 55.000 0.00 0.00 0.00 4.08
123 124 1.344953 ACCCTCGCCCATCTATTGCA 61.345 55.000 0.00 0.00 0.00 4.08
124 125 0.179018 AACCCTCGCCCATCTATTGC 60.179 55.000 0.00 0.00 0.00 3.56
125 126 1.597742 CAACCCTCGCCCATCTATTG 58.402 55.000 0.00 0.00 0.00 1.90
126 127 0.474184 CCAACCCTCGCCCATCTATT 59.526 55.000 0.00 0.00 0.00 1.73
127 128 0.399949 TCCAACCCTCGCCCATCTAT 60.400 55.000 0.00 0.00 0.00 1.98
128 129 0.399949 ATCCAACCCTCGCCCATCTA 60.400 55.000 0.00 0.00 0.00 1.98
129 130 1.694169 ATCCAACCCTCGCCCATCT 60.694 57.895 0.00 0.00 0.00 2.90
130 131 1.526917 CATCCAACCCTCGCCCATC 60.527 63.158 0.00 0.00 0.00 3.51
131 132 2.597340 CATCCAACCCTCGCCCAT 59.403 61.111 0.00 0.00 0.00 4.00
132 133 3.727258 CCATCCAACCCTCGCCCA 61.727 66.667 0.00 0.00 0.00 5.36
133 134 3.728373 ACCATCCAACCCTCGCCC 61.728 66.667 0.00 0.00 0.00 6.13
134 135 2.438434 CACCATCCAACCCTCGCC 60.438 66.667 0.00 0.00 0.00 5.54
135 136 2.438434 CCACCATCCAACCCTCGC 60.438 66.667 0.00 0.00 0.00 5.03
136 137 1.078426 GACCACCATCCAACCCTCG 60.078 63.158 0.00 0.00 0.00 4.63
137 138 0.253327 GAGACCACCATCCAACCCTC 59.747 60.000 0.00 0.00 0.00 4.30
138 139 1.208165 GGAGACCACCATCCAACCCT 61.208 60.000 0.00 0.00 35.54 4.34
139 140 1.303282 GGAGACCACCATCCAACCC 59.697 63.158 0.00 0.00 35.54 4.11
152 153 2.202756 GACACGGATGCGGGAGAC 60.203 66.667 18.37 2.59 0.00 3.36
153 154 3.458163 GGACACGGATGCGGGAGA 61.458 66.667 18.37 0.00 0.00 3.71
154 155 4.873129 CGGACACGGATGCGGGAG 62.873 72.222 18.37 5.04 36.18 4.30
156 157 3.733344 ATTCGGACACGGATGCGGG 62.733 63.158 7.56 7.56 36.82 6.13
157 158 2.202878 ATTCGGACACGGATGCGG 60.203 61.111 12.44 2.33 36.82 5.69
161 162 2.742116 CCCCCATTCGGACACGGAT 61.742 63.158 0.00 0.00 39.40 4.18
162 163 3.395702 CCCCCATTCGGACACGGA 61.396 66.667 0.00 0.00 41.39 4.69
163 164 3.385749 CTCCCCCATTCGGACACGG 62.386 68.421 0.00 0.00 41.39 4.94
164 165 2.186903 CTCCCCCATTCGGACACG 59.813 66.667 0.00 0.00 42.74 4.49
165 166 1.559065 TTCCTCCCCCATTCGGACAC 61.559 60.000 0.00 0.00 0.00 3.67
166 167 1.229690 TTCCTCCCCCATTCGGACA 60.230 57.895 0.00 0.00 0.00 4.02
167 168 1.223763 GTTCCTCCCCCATTCGGAC 59.776 63.158 0.00 0.00 0.00 4.79
168 169 0.549169 AAGTTCCTCCCCCATTCGGA 60.549 55.000 0.00 0.00 0.00 4.55
169 170 0.331616 AAAGTTCCTCCCCCATTCGG 59.668 55.000 0.00 0.00 0.00 4.30
170 171 1.463674 CAAAGTTCCTCCCCCATTCG 58.536 55.000 0.00 0.00 0.00 3.34
171 172 1.186200 GCAAAGTTCCTCCCCCATTC 58.814 55.000 0.00 0.00 0.00 2.67
172 173 0.486879 TGCAAAGTTCCTCCCCCATT 59.513 50.000 0.00 0.00 0.00 3.16
173 174 0.040204 CTGCAAAGTTCCTCCCCCAT 59.960 55.000 0.00 0.00 0.00 4.00
174 175 1.460255 CTGCAAAGTTCCTCCCCCA 59.540 57.895 0.00 0.00 0.00 4.96
175 176 1.304464 CCTGCAAAGTTCCTCCCCC 60.304 63.158 0.00 0.00 0.00 5.40
176 177 0.895559 CACCTGCAAAGTTCCTCCCC 60.896 60.000 0.00 0.00 0.00 4.81
177 178 0.895559 CCACCTGCAAAGTTCCTCCC 60.896 60.000 0.00 0.00 0.00 4.30
178 179 1.527433 GCCACCTGCAAAGTTCCTCC 61.527 60.000 0.00 0.00 40.77 4.30
179 180 1.527433 GGCCACCTGCAAAGTTCCTC 61.527 60.000 0.00 0.00 43.89 3.71
180 181 1.531602 GGCCACCTGCAAAGTTCCT 60.532 57.895 0.00 0.00 43.89 3.36
181 182 2.919494 CGGCCACCTGCAAAGTTCC 61.919 63.158 2.24 0.00 43.89 3.62
182 183 1.734388 AACGGCCACCTGCAAAGTTC 61.734 55.000 2.24 0.00 43.89 3.01
183 184 1.756561 AACGGCCACCTGCAAAGTT 60.757 52.632 2.24 0.00 43.89 2.66
184 185 2.123897 AACGGCCACCTGCAAAGT 60.124 55.556 2.24 0.00 43.89 2.66
185 186 2.336088 CAACGGCCACCTGCAAAG 59.664 61.111 2.24 0.00 43.89 2.77
186 187 3.222855 CCAACGGCCACCTGCAAA 61.223 61.111 2.24 0.00 43.89 3.68
187 188 4.196778 TCCAACGGCCACCTGCAA 62.197 61.111 2.24 0.00 43.89 4.08
188 189 4.641645 CTCCAACGGCCACCTGCA 62.642 66.667 2.24 0.00 43.89 4.41
189 190 3.628646 ATCTCCAACGGCCACCTGC 62.629 63.158 2.24 0.00 40.16 4.85
190 191 1.746615 CATCTCCAACGGCCACCTG 60.747 63.158 2.24 0.00 0.00 4.00
191 192 2.671070 CATCTCCAACGGCCACCT 59.329 61.111 2.24 0.00 0.00 4.00
192 193 3.134127 GCATCTCCAACGGCCACC 61.134 66.667 2.24 0.00 0.00 4.61
193 194 3.134127 GGCATCTCCAACGGCCAC 61.134 66.667 2.24 0.00 45.70 5.01
195 196 2.265467 TTAGGGCATCTCCAACGGCC 62.265 60.000 0.00 0.00 45.67 6.13
196 197 0.179018 ATTAGGGCATCTCCAACGGC 60.179 55.000 0.00 0.00 36.21 5.68
197 198 2.632996 TCTATTAGGGCATCTCCAACGG 59.367 50.000 0.00 0.00 36.21 4.44
198 199 4.336889 TTCTATTAGGGCATCTCCAACG 57.663 45.455 0.00 0.00 36.21 4.10
199 200 5.471456 CACATTCTATTAGGGCATCTCCAAC 59.529 44.000 0.00 0.00 36.21 3.77
200 201 5.456619 CCACATTCTATTAGGGCATCTCCAA 60.457 44.000 0.00 0.00 36.21 3.53
201 202 4.042062 CCACATTCTATTAGGGCATCTCCA 59.958 45.833 0.00 0.00 36.21 3.86
202 203 4.566488 CCCACATTCTATTAGGGCATCTCC 60.566 50.000 0.00 0.00 31.81 3.71
203 204 4.566488 CCCCACATTCTATTAGGGCATCTC 60.566 50.000 0.00 0.00 38.22 2.75
204 205 3.331889 CCCCACATTCTATTAGGGCATCT 59.668 47.826 0.00 0.00 38.22 2.90
205 206 3.562176 CCCCCACATTCTATTAGGGCATC 60.562 52.174 0.00 0.00 38.22 3.91
206 207 2.379907 CCCCCACATTCTATTAGGGCAT 59.620 50.000 0.00 0.00 38.22 4.40
207 208 1.780309 CCCCCACATTCTATTAGGGCA 59.220 52.381 0.00 0.00 38.22 5.36
208 209 2.040412 CTCCCCCACATTCTATTAGGGC 59.960 54.545 0.00 0.00 38.22 5.19
209 210 3.598264 TCTCCCCCACATTCTATTAGGG 58.402 50.000 0.00 0.00 39.29 3.53
210 211 4.599241 ACATCTCCCCCACATTCTATTAGG 59.401 45.833 0.00 0.00 0.00 2.69
211 212 5.513788 CCACATCTCCCCCACATTCTATTAG 60.514 48.000 0.00 0.00 0.00 1.73
214 215 2.713167 CCACATCTCCCCCACATTCTAT 59.287 50.000 0.00 0.00 0.00 1.98
223 224 3.711059 CTGCTGCCACATCTCCCCC 62.711 68.421 0.00 0.00 0.00 5.40
225 226 1.153208 CTCTGCTGCCACATCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
236 237 2.800881 TGATATGTACGGCTCTGCTG 57.199 50.000 0.00 0.00 41.29 4.41
237 238 3.070159 ACAATGATATGTACGGCTCTGCT 59.930 43.478 0.00 0.00 0.00 4.24
240 241 6.406692 AGTTACAATGATATGTACGGCTCT 57.593 37.500 0.00 0.00 35.60 4.09
252 256 4.910195 TGTCAGAGGCAAGTTACAATGAT 58.090 39.130 0.00 0.00 0.00 2.45
255 259 4.357918 ACTGTCAGAGGCAAGTTACAAT 57.642 40.909 6.91 0.00 0.00 2.71
263 267 2.310779 AGGACTACTGTCAGAGGCAA 57.689 50.000 6.91 0.00 44.61 4.52
272 276 3.011821 TGGATGAGAGGAAGGACTACTGT 59.988 47.826 0.00 0.00 0.00 3.55
282 286 4.414514 ACCATGATGATTGGATGAGAGGAA 59.585 41.667 0.00 0.00 37.69 3.36
293 297 5.244785 GCTATATGCCACCATGATGATTG 57.755 43.478 0.00 0.00 35.15 2.67
316 320 9.064706 AGGTGATGATTATCAGAAAAATAGCAG 57.935 33.333 0.00 0.00 43.66 4.24
318 322 9.890352 GAAGGTGATGATTATCAGAAAAATAGC 57.110 33.333 0.00 0.00 43.66 2.97
326 330 7.567458 TGAACATGAAGGTGATGATTATCAGA 58.433 34.615 0.00 0.00 43.66 3.27
327 331 7.797038 TGAACATGAAGGTGATGATTATCAG 57.203 36.000 0.00 0.00 43.66 2.90
338 342 3.251479 TCGGAGATGAACATGAAGGTG 57.749 47.619 0.00 0.00 0.00 4.00
340 344 3.055591 CGATCGGAGATGAACATGAAGG 58.944 50.000 7.38 0.00 45.12 3.46
352 356 1.175347 CCTGCAGGATCGATCGGAGA 61.175 60.000 29.88 0.00 38.30 3.71
357 361 7.044181 TGAATATATTTCCTGCAGGATCGATC 58.956 38.462 35.42 24.07 44.98 3.69
360 364 6.312426 GTCTGAATATATTTCCTGCAGGATCG 59.688 42.308 35.42 21.08 44.98 3.69
362 366 7.327064 AGTCTGAATATATTTCCTGCAGGAT 57.673 36.000 35.42 23.96 44.98 3.24
367 371 7.442364 TGTGCTAAGTCTGAATATATTTCCTGC 59.558 37.037 0.00 0.00 0.00 4.85
420 424 7.706179 CCTTAAATTGTGAGCTTTGTTTCTTCA 59.294 33.333 0.00 0.00 0.00 3.02
431 435 4.973168 TGTCACTCCTTAAATTGTGAGCT 58.027 39.130 0.00 0.00 39.65 4.09
465 469 9.545105 AAATAGCAAACTCATGATTGTTGAAAA 57.455 25.926 14.19 2.92 0.00 2.29
466 470 8.980610 CAAATAGCAAACTCATGATTGTTGAAA 58.019 29.630 14.19 4.72 0.00 2.69
510 514 6.475207 CACAAAGTCAATACTAACGCATACC 58.525 40.000 0.00 0.00 33.75 2.73
513 517 4.454161 TGCACAAAGTCAATACTAACGCAT 59.546 37.500 0.00 0.00 33.75 4.73
523 527 1.547372 GCTGGGATGCACAAAGTCAAT 59.453 47.619 0.00 0.00 0.00 2.57
530 534 2.239402 TCTGAATAGCTGGGATGCACAA 59.761 45.455 0.00 0.00 34.99 3.33
535 539 2.288702 CGGTCTCTGAATAGCTGGGATG 60.289 54.545 0.00 0.00 0.00 3.51
547 551 0.324368 AGCACATACCCGGTCTCTGA 60.324 55.000 0.00 0.00 0.00 3.27
560 564 5.559427 TGATACAAACGCAATAAGCACAT 57.441 34.783 0.00 0.00 46.13 3.21
561 565 5.353956 AGATGATACAAACGCAATAAGCACA 59.646 36.000 0.00 0.00 46.13 4.57
567 571 6.260714 AGCATCAAGATGATACAAACGCAATA 59.739 34.615 13.93 0.00 41.20 1.90
594 598 8.893563 AGGGTGGATTTTATTCACTCAAAATA 57.106 30.769 1.07 0.00 35.14 1.40
624 634 4.872124 GGCCAGGAACATCAATGATTTTTC 59.128 41.667 0.00 0.00 0.00 2.29
660 673 1.829222 GGACGGTGATTCCAACCTCTA 59.171 52.381 0.00 0.00 35.57 2.43
692 705 4.611366 GTCAAATAACCGTTTTCTTCTGCG 59.389 41.667 0.00 0.00 0.00 5.18
719 732 2.158885 TGATGACCGACAGTTTGAACCA 60.159 45.455 0.00 0.00 0.00 3.67
725 738 5.766150 TGATTTTTGATGACCGACAGTTT 57.234 34.783 0.00 0.00 0.00 2.66
726 739 5.766150 TTGATTTTTGATGACCGACAGTT 57.234 34.783 0.00 0.00 0.00 3.16
730 743 3.543494 CGCATTGATTTTTGATGACCGAC 59.457 43.478 0.00 0.00 0.00 4.79
733 746 3.189285 CCCGCATTGATTTTTGATGACC 58.811 45.455 0.00 0.00 0.00 4.02
744 757 4.189580 CCCGGGACCCGCATTGAT 62.190 66.667 28.37 0.00 46.86 2.57
765 778 1.415672 AAGACTTGGACTTGGCCGGA 61.416 55.000 5.05 0.00 0.00 5.14
869 884 7.195374 TGCCTCCAAAAAGACTAGTATACAT 57.805 36.000 5.50 0.00 0.00 2.29
882 897 2.951642 CACAGAGACTTGCCTCCAAAAA 59.048 45.455 0.00 0.00 33.76 1.94
893 908 0.318762 GGGCGTTCTCACAGAGACTT 59.681 55.000 0.00 0.00 38.51 3.01
899 914 0.460987 GAGGATGGGCGTTCTCACAG 60.461 60.000 0.00 0.00 0.00 3.66
910 925 0.833287 ACTTCCACATCGAGGATGGG 59.167 55.000 3.06 5.77 43.60 4.00
935 950 4.393062 AGAAGATGGTATGCAAACTTCACG 59.607 41.667 10.17 0.00 37.00 4.35
978 995 4.624452 GTGAGTCGAGGTATTTTGGTGTAC 59.376 45.833 0.00 0.00 0.00 2.90
991 1008 4.177026 CTGGAAATGTTAGTGAGTCGAGG 58.823 47.826 0.00 0.00 0.00 4.63
1024 1041 9.998106 TTAATTAGAGCCAGACCTATGTAAATC 57.002 33.333 0.00 0.00 0.00 2.17
1029 1046 6.183361 CCACTTAATTAGAGCCAGACCTATGT 60.183 42.308 0.00 0.00 0.00 2.29
1145 1162 5.789575 AGCCCTCAACATATTGATAGATCCT 59.210 40.000 0.00 0.00 43.92 3.24
1179 1196 1.599542 GTCTGTTTGAGTGGTGCAGAC 59.400 52.381 7.15 7.15 45.70 3.51
1184 1201 1.003545 CAAGCGTCTGTTTGAGTGGTG 60.004 52.381 0.00 0.00 38.45 4.17
1218 1235 2.402564 TGGCCAAATCCCTGTTGAAAA 58.597 42.857 0.61 0.00 0.00 2.29
1334 1351 7.594714 TCGGATAGCTACATATGAGACTTTTC 58.405 38.462 10.38 4.34 0.00 2.29
1344 1363 5.717178 ACCAGTCATTCGGATAGCTACATAT 59.283 40.000 0.00 0.00 0.00 1.78
1345 1364 5.048013 CACCAGTCATTCGGATAGCTACATA 60.048 44.000 0.00 0.00 0.00 2.29
1400 1420 8.299570 AGAAAATAACAGAACTCATTCGCAATT 58.700 29.630 0.00 0.00 40.04 2.32
1401 1421 7.752239 CAGAAAATAACAGAACTCATTCGCAAT 59.248 33.333 0.00 0.00 40.04 3.56
1415 1435 5.389859 TTCATGTGGGCAGAAAATAACAG 57.610 39.130 0.00 0.00 0.00 3.16
1459 1480 6.262944 TGTTAAGTGAACTGCAAATCTGTGAT 59.737 34.615 0.00 0.00 38.98 3.06
1480 1501 2.481185 GGCCGTCTTCGAAAATGTGTTA 59.519 45.455 0.00 0.00 39.71 2.41
1492 1513 1.668151 GGTGTGTGAGGCCGTCTTC 60.668 63.158 0.00 0.00 0.00 2.87
1497 1518 1.741770 GCTAAGGTGTGTGAGGCCG 60.742 63.158 0.00 0.00 0.00 6.13
1516 1537 5.440234 ACACATCTATACCACTCGCTAAG 57.560 43.478 0.00 0.00 0.00 2.18
1538 1559 1.601419 GCACGAGTAGGCCAGGTGTA 61.601 60.000 5.01 0.00 0.00 2.90
1547 1568 0.657659 CGCTACGATGCACGAGTAGG 60.658 60.000 19.92 10.76 45.77 3.18
1548 1569 1.262824 GCGCTACGATGCACGAGTAG 61.263 60.000 16.32 16.32 45.77 2.57
1554 1575 1.071239 CAGTTATGCGCTACGATGCAC 60.071 52.381 9.73 0.00 45.07 4.57
1602 1623 1.783284 TTGACTTGTCGCTACAGCAG 58.217 50.000 1.61 0.00 42.21 4.24
1603 1624 2.337583 GATTGACTTGTCGCTACAGCA 58.662 47.619 1.61 0.00 42.21 4.41
1604 1625 1.661112 GGATTGACTTGTCGCTACAGC 59.339 52.381 0.00 0.00 36.83 4.40
1733 1756 3.314331 AGCCCGGCATCCCTATCG 61.314 66.667 13.15 0.00 0.00 2.92
1782 1805 2.203015 CCCATGCCGAACGGGTAG 60.203 66.667 15.01 0.00 38.44 3.18
1889 1912 2.126071 CGACCTCGAACACGCCAT 60.126 61.111 0.00 0.00 43.02 4.40
1923 1946 2.005995 GATGCGCATCGTGCTGTTA 58.994 52.632 32.60 0.00 42.25 2.41
1960 1983 0.452987 CCGTTGCTCATGTTGATGGG 59.547 55.000 0.00 0.00 32.51 4.00
2000 2029 1.444553 CCGACGGTCTCAGCTTCAC 60.445 63.158 5.48 0.00 0.00 3.18
2068 2097 2.918345 GCACATTGCAGCCCGTCAA 61.918 57.895 0.00 0.00 44.26 3.18
2091 2120 2.593436 CCGTTCCCCAGCAACGTT 60.593 61.111 0.00 0.00 44.16 3.99
2165 2201 7.489239 TTTCCCCTTTCATAAATTTGGGTAG 57.511 36.000 0.00 0.00 33.13 3.18
2226 2694 0.676466 CGCTGGCAGTTTGGATGGTA 60.676 55.000 17.16 0.00 0.00 3.25
2284 2752 1.269448 CCCAAAATTGCTGTACACGCT 59.731 47.619 15.28 0.00 0.00 5.07
2444 2916 1.894756 TTGTGTGCTAACGCCCACC 60.895 57.895 0.00 0.00 42.83 4.61
2454 2926 2.260844 ATACTGCTGTGTTGTGTGCT 57.739 45.000 6.48 0.00 0.00 4.40
2461 2933 4.569943 CCAGTGTTCTATACTGCTGTGTT 58.430 43.478 6.48 0.00 43.19 3.32
2464 2936 2.093447 GGCCAGTGTTCTATACTGCTGT 60.093 50.000 0.00 0.66 43.19 4.40
2472 2944 1.668419 GCGAATGGCCAGTGTTCTAT 58.332 50.000 12.17 0.00 34.80 1.98
2475 2947 1.852067 AACGCGAATGGCCAGTGTTC 61.852 55.000 12.17 9.22 38.94 3.18
2565 3037 2.545946 GCACGAATAGCCTCTGATTTCC 59.454 50.000 0.00 0.00 0.00 3.13
2593 3071 3.541713 GCCCTCGTAGCCCTCCTG 61.542 72.222 0.00 0.00 0.00 3.86
2663 3141 9.989394 GCAAAAATAGAATCAAGTTTACGAAAC 57.011 29.630 0.00 0.00 41.69 2.78
2666 3144 8.020819 CAGGCAAAAATAGAATCAAGTTTACGA 58.979 33.333 0.00 0.00 0.00 3.43
2708 3186 7.895975 TGCACTCTTTGATATCTGCATATAC 57.104 36.000 10.14 0.00 29.85 1.47
2838 3316 1.520120 ACAGCGTCGATGATGCAGG 60.520 57.895 22.15 0.00 45.92 4.85
2860 3338 4.397103 CACACTAGTGTACCTCGGATTGTA 59.603 45.833 27.48 0.00 42.83 2.41
2880 3358 2.858839 CACGCACTAGTAATCGACACA 58.141 47.619 15.33 0.00 0.00 3.72
2894 3372 0.179150 TTGTTTCCTGTTGCACGCAC 60.179 50.000 0.00 0.00 0.00 5.34
2953 3431 2.271800 GTGACGCATTTCACTCCTAGG 58.728 52.381 0.82 0.82 42.36 3.02
2969 3447 3.921677 TCCGAATTGTTGGACTAGTGAC 58.078 45.455 0.00 0.00 0.00 3.67
2995 3473 7.538303 AACAATTTTATGGCCAAAATCGATC 57.462 32.000 10.96 0.00 37.17 3.69
3004 3482 9.730705 TTGATCAAATAAACAATTTTATGGCCA 57.269 25.926 8.56 8.56 37.85 5.36
3019 3497 9.796120 CGGTTTTAGCCTTATTTGATCAAATAA 57.204 29.630 34.90 34.90 45.62 1.40
3037 3515 3.795623 TTCCTCTCGGATCGGTTTTAG 57.204 47.619 0.00 0.00 39.58 1.85
3038 3516 4.540359 TTTTCCTCTCGGATCGGTTTTA 57.460 40.909 0.00 0.00 39.58 1.52
3069 3547 3.364441 GCTGACAATGCGGGCACA 61.364 61.111 0.00 0.00 0.00 4.57
3078 3556 2.158755 CCGAATAAGGGAGGCTGACAAT 60.159 50.000 0.00 0.00 0.00 2.71
3079 3557 1.209504 CCGAATAAGGGAGGCTGACAA 59.790 52.381 0.00 0.00 0.00 3.18
3136 3617 3.706600 TTTGTATACAAAGCGAGGGGT 57.293 42.857 23.91 0.00 40.55 4.95
3191 3673 3.386867 GATTGTGCTGCTTCCGCCG 62.387 63.158 0.00 0.00 34.43 6.46
3447 3982 2.833943 GGGAGAAATCCATGTTGGCTTT 59.166 45.455 0.00 0.00 38.43 3.51
3490 4025 0.033503 TGGTGGCGAGATCAGGAGTA 60.034 55.000 0.00 0.00 0.00 2.59
3496 4031 1.375396 CGGTTTGGTGGCGAGATCA 60.375 57.895 0.00 0.00 0.00 2.92
3526 4062 3.910914 TTCATGACCGGGTTGGCGG 62.911 63.158 6.32 0.00 43.94 6.13
3652 4189 1.202521 CCGTCATTGATGGTGGATCGA 60.203 52.381 15.63 0.00 34.27 3.59
3653 4190 1.220529 CCGTCATTGATGGTGGATCG 58.779 55.000 15.63 0.01 34.27 3.69
3654 4191 6.544646 AGCTACCGTCATTGATGGTGGATC 62.545 50.000 33.54 21.47 43.42 3.36
3817 4355 4.785453 CCTCTGTGCGGGGAAGCC 62.785 72.222 0.00 0.00 36.02 4.35
4013 4559 3.713205 CTCATGGCAGCGCGACTCT 62.713 63.158 12.10 0.00 0.00 3.24
4039 4585 1.602323 GACAATGGTTCCGGTGGCA 60.602 57.895 0.00 0.00 0.00 4.92
4043 4589 2.359478 GCCGACAATGGTTCCGGT 60.359 61.111 0.00 0.00 43.51 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.