Multiple sequence alignment - TraesCS3D01G463500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G463500 chr3D 100.000 2783 0 0 1 2783 567665437 567662655 0.000000e+00 5140
1 TraesCS3D01G463500 chr3D 94.013 2238 109 14 563 2783 568234827 568237056 0.000000e+00 3367
2 TraesCS3D01G463500 chr3D 80.676 1273 182 33 527 1784 569119656 569118433 0.000000e+00 929
3 TraesCS3D01G463500 chr3D 81.834 1123 178 16 666 1785 58089778 58088679 0.000000e+00 920
4 TraesCS3D01G463500 chr3D 91.767 498 25 5 1 482 68840216 68839719 0.000000e+00 678
5 TraesCS3D01G463500 chr3D 91.296 494 28 6 1 479 252333541 252334034 0.000000e+00 660
6 TraesCS3D01G463500 chr3D 82.164 499 58 16 2314 2783 58088265 58087769 1.550000e-107 399
7 TraesCS3D01G463500 chr3D 77.569 691 111 32 593 1279 567485566 567486216 7.280000e-101 377
8 TraesCS3D01G463500 chr3D 86.636 217 26 3 637 853 520426587 520426800 1.290000e-58 237
9 TraesCS3D01G463500 chr3D 88.793 116 8 4 2171 2286 157035645 157035755 1.340000e-28 137
10 TraesCS3D01G463500 chr3A 81.030 1534 234 38 666 2179 66914203 66912707 0.000000e+00 1168
11 TraesCS3D01G463500 chr3A 78.899 1308 214 33 663 1936 701351715 701352994 0.000000e+00 830
12 TraesCS3D01G463500 chr3A 82.878 549 65 14 2260 2783 66912538 66911994 1.510000e-127 466
13 TraesCS3D01G463500 chr3A 82.014 278 42 8 567 842 699533308 699533579 2.160000e-56 230
14 TraesCS3D01G463500 chrUn 80.775 1238 175 36 562 1784 287633223 287634412 0.000000e+00 909
15 TraesCS3D01G463500 chrUn 80.775 1238 175 36 562 1784 292972791 292971602 0.000000e+00 909
16 TraesCS3D01G463500 chrUn 79.017 977 150 31 821 1784 338767959 338767025 3.940000e-173 617
17 TraesCS3D01G463500 chrUn 79.449 798 142 16 1183 1969 40962870 40963656 1.880000e-151 545
18 TraesCS3D01G463500 chrUn 79.449 798 142 16 1183 1969 326502007 326502793 1.880000e-151 545
19 TraesCS3D01G463500 chrUn 79.185 466 80 10 1598 2060 340248326 340247875 9.680000e-80 307
20 TraesCS3D01G463500 chrUn 74.427 786 157 33 1393 2161 314515553 314514795 5.830000e-77 298
21 TraesCS3D01G463500 chr5B 90.946 497 30 3 1 482 530951256 530950760 0.000000e+00 654
22 TraesCS3D01G463500 chr5B 83.711 485 66 9 1 482 210180229 210179755 1.970000e-121 446
23 TraesCS3D01G463500 chr1A 90.220 501 31 7 1 486 497493998 497493501 3.020000e-179 638
24 TraesCS3D01G463500 chr4B 90.141 497 32 6 1 482 621278020 621278514 5.060000e-177 630
25 TraesCS3D01G463500 chr4B 89.286 112 10 2 2158 2269 484771840 484771731 3.740000e-29 139
26 TraesCS3D01G463500 chr5A 90.144 487 42 5 1 482 481886352 481886837 1.820000e-176 628
27 TraesCS3D01G463500 chr3B 89.738 497 34 7 1 482 768092085 768092579 1.090000e-173 619
28 TraesCS3D01G463500 chr3B 90.476 189 18 0 665 853 685393571 685393759 1.650000e-62 250
29 TraesCS3D01G463500 chr3B 76.645 471 89 18 1595 2058 754849266 754848810 9.960000e-60 241
30 TraesCS3D01G463500 chr1B 88.753 489 50 5 1 486 669787492 669787006 6.640000e-166 593
31 TraesCS3D01G463500 chr2D 88.320 488 45 9 1 482 408330903 408331384 2.400000e-160 575
32 TraesCS3D01G463500 chr7D 85.979 485 57 7 1 482 285264920 285265396 2.470000e-140 508
33 TraesCS3D01G463500 chr7D 86.036 444 57 4 43 485 570687826 570687387 3.240000e-129 472
34 TraesCS3D01G463500 chr7D 95.699 93 4 0 2177 2269 361747123 361747031 1.730000e-32 150
35 TraesCS3D01G463500 chr7D 94.681 94 5 0 2178 2271 220311181 220311088 2.230000e-31 147
36 TraesCS3D01G463500 chr2B 75.766 718 141 24 1082 1784 68196543 68197242 5.750000e-87 331
37 TraesCS3D01G463500 chr2B 92.308 104 5 3 2166 2268 63783824 63783723 8.030000e-31 145
38 TraesCS3D01G463500 chr6B 81.560 282 43 6 637 912 565398519 565398797 1.000000e-54 224
39 TraesCS3D01G463500 chr2A 97.727 88 2 0 2178 2265 7558659 7558746 4.800000e-33 152
40 TraesCS3D01G463500 chr4D 95.699 93 4 0 2177 2269 371601301 371601209 1.730000e-32 150
41 TraesCS3D01G463500 chr1D 93.069 101 7 0 2178 2278 286707548 286707448 6.210000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G463500 chr3D 567662655 567665437 2782 True 5140.0 5140 100.000 1 2783 1 chr3D.!!$R2 2782
1 TraesCS3D01G463500 chr3D 568234827 568237056 2229 False 3367.0 3367 94.013 563 2783 1 chr3D.!!$F5 2220
2 TraesCS3D01G463500 chr3D 569118433 569119656 1223 True 929.0 929 80.676 527 1784 1 chr3D.!!$R3 1257
3 TraesCS3D01G463500 chr3D 58087769 58089778 2009 True 659.5 920 81.999 666 2783 2 chr3D.!!$R4 2117
4 TraesCS3D01G463500 chr3D 567485566 567486216 650 False 377.0 377 77.569 593 1279 1 chr3D.!!$F4 686
5 TraesCS3D01G463500 chr3A 701351715 701352994 1279 False 830.0 830 78.899 663 1936 1 chr3A.!!$F2 1273
6 TraesCS3D01G463500 chr3A 66911994 66914203 2209 True 817.0 1168 81.954 666 2783 2 chr3A.!!$R1 2117
7 TraesCS3D01G463500 chrUn 287633223 287634412 1189 False 909.0 909 80.775 562 1784 1 chrUn.!!$F2 1222
8 TraesCS3D01G463500 chrUn 292971602 292972791 1189 True 909.0 909 80.775 562 1784 1 chrUn.!!$R1 1222
9 TraesCS3D01G463500 chrUn 338767025 338767959 934 True 617.0 617 79.017 821 1784 1 chrUn.!!$R3 963
10 TraesCS3D01G463500 chrUn 40962870 40963656 786 False 545.0 545 79.449 1183 1969 1 chrUn.!!$F1 786
11 TraesCS3D01G463500 chrUn 326502007 326502793 786 False 545.0 545 79.449 1183 1969 1 chrUn.!!$F3 786
12 TraesCS3D01G463500 chrUn 314514795 314515553 758 True 298.0 298 74.427 1393 2161 1 chrUn.!!$R2 768
13 TraesCS3D01G463500 chr2B 68196543 68197242 699 False 331.0 331 75.766 1082 1784 1 chr2B.!!$F1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.036306 ACGGTGGTGGAAGATGAACC 59.964 55.0 0.0 0.0 34.38 3.62 F
207 208 0.103876 AGGGAGGGGCTAAATAGGGG 60.104 60.0 0.0 0.0 0.00 4.79 F
214 215 0.110678 GGCTAAATAGGGGGTGGAGC 59.889 60.0 0.0 0.0 0.00 4.70 F
248 249 0.179045 CGGAATCCTCCTGCCGATTT 60.179 55.0 0.0 0.0 46.29 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1038 1089 1.138859 CGAGTGATGGGGTTGCAGATA 59.861 52.381 0.00 0.0 0.0 1.98 R
1194 1248 1.626321 TGGTCGGAGCCTAATGTGAAA 59.374 47.619 4.54 0.0 0.0 2.69 R
1675 1748 2.501723 GAGTAGGACAGAGGAATTGGCA 59.498 50.000 0.00 0.0 0.0 4.92 R
1907 2014 3.595190 ACAAGGAAAACTAGTGGGCTT 57.405 42.857 0.00 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.816984 GAGGCCATGGCTGCAGCT 62.817 66.667 35.82 23.13 38.98 4.24
18 19 4.377760 AGGCCATGGCTGCAGCTT 62.378 61.111 35.82 21.99 41.70 3.74
19 20 4.143333 GGCCATGGCTGCAGCTTG 62.143 66.667 35.82 29.99 41.70 4.01
20 21 3.066190 GCCATGGCTGCAGCTTGA 61.066 61.111 35.82 21.29 41.70 3.02
21 22 3.064987 GCCATGGCTGCAGCTTGAG 62.065 63.158 35.82 24.52 41.70 3.02
22 23 2.415608 CCATGGCTGCAGCTTGAGG 61.416 63.158 35.82 26.73 41.70 3.86
23 24 1.378119 CATGGCTGCAGCTTGAGGA 60.378 57.895 35.82 14.74 41.70 3.71
24 25 1.378250 ATGGCTGCAGCTTGAGGAC 60.378 57.895 35.82 19.05 41.70 3.85
25 26 3.123620 GGCTGCAGCTTGAGGACG 61.124 66.667 35.82 0.00 41.70 4.79
26 27 2.047844 GCTGCAGCTTGAGGACGA 60.048 61.111 31.33 0.00 38.21 4.20
27 28 2.099431 GCTGCAGCTTGAGGACGAG 61.099 63.158 31.33 0.00 38.21 4.18
28 29 1.447489 CTGCAGCTTGAGGACGAGG 60.447 63.158 0.00 0.00 0.00 4.63
29 30 2.125350 GCAGCTTGAGGACGAGGG 60.125 66.667 0.00 0.00 0.00 4.30
30 31 2.581354 CAGCTTGAGGACGAGGGG 59.419 66.667 0.00 0.00 0.00 4.79
31 32 2.685380 AGCTTGAGGACGAGGGGG 60.685 66.667 0.00 0.00 0.00 5.40
45 46 4.029809 GGGGGACGGTGGTGGAAG 62.030 72.222 0.00 0.00 0.00 3.46
46 47 2.926242 GGGGACGGTGGTGGAAGA 60.926 66.667 0.00 0.00 0.00 2.87
47 48 2.298661 GGGGACGGTGGTGGAAGAT 61.299 63.158 0.00 0.00 0.00 2.40
48 49 1.078426 GGGACGGTGGTGGAAGATG 60.078 63.158 0.00 0.00 0.00 2.90
49 50 1.550130 GGGACGGTGGTGGAAGATGA 61.550 60.000 0.00 0.00 0.00 2.92
50 51 0.323629 GGACGGTGGTGGAAGATGAA 59.676 55.000 0.00 0.00 0.00 2.57
51 52 1.439679 GACGGTGGTGGAAGATGAAC 58.560 55.000 0.00 0.00 0.00 3.18
52 53 0.036306 ACGGTGGTGGAAGATGAACC 59.964 55.000 0.00 0.00 34.38 3.62
53 54 0.676782 CGGTGGTGGAAGATGAACCC 60.677 60.000 0.00 0.00 32.70 4.11
54 55 0.323451 GGTGGTGGAAGATGAACCCC 60.323 60.000 0.00 0.00 32.70 4.95
55 56 0.676782 GTGGTGGAAGATGAACCCCG 60.677 60.000 0.00 0.00 32.70 5.73
56 57 1.077716 GGTGGAAGATGAACCCCGG 60.078 63.158 0.00 0.00 0.00 5.73
57 58 1.749258 GTGGAAGATGAACCCCGGC 60.749 63.158 0.00 0.00 0.00 6.13
58 59 2.124278 GGAAGATGAACCCCGGCC 60.124 66.667 0.00 0.00 0.00 6.13
59 60 2.513897 GAAGATGAACCCCGGCCG 60.514 66.667 21.04 21.04 0.00 6.13
60 61 4.109675 AAGATGAACCCCGGCCGG 62.110 66.667 37.99 37.99 0.00 6.13
71 72 4.821589 CGGCCGGTGAAGGAGCTC 62.822 72.222 20.10 4.71 0.00 4.09
72 73 3.394836 GGCCGGTGAAGGAGCTCT 61.395 66.667 14.64 0.00 0.00 4.09
73 74 2.125350 GCCGGTGAAGGAGCTCTG 60.125 66.667 14.64 0.00 0.00 3.35
74 75 2.581354 CCGGTGAAGGAGCTCTGG 59.419 66.667 14.64 0.00 0.00 3.86
75 76 2.125350 CGGTGAAGGAGCTCTGGC 60.125 66.667 14.64 3.55 39.06 4.85
76 77 2.125350 GGTGAAGGAGCTCTGGCG 60.125 66.667 14.64 0.00 44.37 5.69
77 78 2.817396 GTGAAGGAGCTCTGGCGC 60.817 66.667 14.64 0.00 44.37 6.53
98 99 4.467084 GGACAGCCGGCCGATGAA 62.467 66.667 30.73 0.00 0.00 2.57
99 100 3.195698 GACAGCCGGCCGATGAAC 61.196 66.667 30.73 18.73 0.00 3.18
100 101 3.950794 GACAGCCGGCCGATGAACA 62.951 63.158 30.73 0.00 0.00 3.18
101 102 2.514592 CAGCCGGCCGATGAACAT 60.515 61.111 30.73 0.00 0.00 2.71
102 103 2.514592 AGCCGGCCGATGAACATG 60.515 61.111 30.73 8.26 0.00 3.21
103 104 4.256090 GCCGGCCGATGAACATGC 62.256 66.667 30.73 15.52 0.00 4.06
104 105 3.940640 CCGGCCGATGAACATGCG 61.941 66.667 30.73 0.44 0.00 4.73
105 106 4.596180 CGGCCGATGAACATGCGC 62.596 66.667 24.07 0.00 0.00 6.09
106 107 4.256090 GGCCGATGAACATGCGCC 62.256 66.667 4.18 6.14 0.00 6.53
107 108 4.596180 GCCGATGAACATGCGCCG 62.596 66.667 4.18 0.00 0.00 6.46
108 109 4.596180 CCGATGAACATGCGCCGC 62.596 66.667 4.18 0.00 0.00 6.53
109 110 3.566853 CGATGAACATGCGCCGCT 61.567 61.111 11.67 0.00 0.00 5.52
110 111 2.793946 GATGAACATGCGCCGCTT 59.206 55.556 11.67 0.00 0.00 4.68
111 112 1.761244 CGATGAACATGCGCCGCTTA 61.761 55.000 11.67 0.00 0.00 3.09
112 113 0.316196 GATGAACATGCGCCGCTTAC 60.316 55.000 11.67 0.04 0.00 2.34
113 114 1.714899 ATGAACATGCGCCGCTTACC 61.715 55.000 11.67 0.00 0.00 2.85
114 115 2.046314 AACATGCGCCGCTTACCT 60.046 55.556 11.67 0.00 0.00 3.08
115 116 2.309764 GAACATGCGCCGCTTACCTG 62.310 60.000 11.67 2.73 0.00 4.00
116 117 4.241999 CATGCGCCGCTTACCTGC 62.242 66.667 11.67 0.00 0.00 4.85
117 118 4.473520 ATGCGCCGCTTACCTGCT 62.474 61.111 11.67 0.00 0.00 4.24
120 121 4.796231 CGCCGCTTACCTGCTCGT 62.796 66.667 0.00 0.00 0.00 4.18
121 122 2.886124 GCCGCTTACCTGCTCGTC 60.886 66.667 0.00 0.00 0.00 4.20
122 123 2.579787 CCGCTTACCTGCTCGTCG 60.580 66.667 0.00 0.00 0.00 5.12
123 124 2.579787 CGCTTACCTGCTCGTCGG 60.580 66.667 0.00 0.00 0.00 4.79
124 125 2.572284 GCTTACCTGCTCGTCGGT 59.428 61.111 0.00 0.00 37.31 4.69
125 126 1.805945 GCTTACCTGCTCGTCGGTG 60.806 63.158 0.00 0.00 34.76 4.94
126 127 1.805945 CTTACCTGCTCGTCGGTGC 60.806 63.158 0.00 0.00 34.76 5.01
127 128 2.214181 CTTACCTGCTCGTCGGTGCT 62.214 60.000 11.21 0.00 34.76 4.40
128 129 2.486636 TTACCTGCTCGTCGGTGCTG 62.487 60.000 11.21 10.40 34.76 4.41
129 130 4.056125 CCTGCTCGTCGGTGCTGA 62.056 66.667 15.32 0.00 34.68 4.26
130 131 2.182791 CTGCTCGTCGGTGCTGAT 59.817 61.111 11.21 0.00 34.68 2.90
131 132 2.125952 TGCTCGTCGGTGCTGATG 60.126 61.111 11.21 0.00 33.89 3.07
132 133 3.558411 GCTCGTCGGTGCTGATGC 61.558 66.667 0.00 0.00 40.20 3.91
133 134 3.250323 CTCGTCGGTGCTGATGCG 61.250 66.667 0.00 0.00 43.34 4.73
157 158 4.367023 CGGGAAGGTGCGAACGGA 62.367 66.667 0.00 0.00 0.00 4.69
158 159 2.434359 GGGAAGGTGCGAACGGAG 60.434 66.667 0.00 0.00 0.00 4.63
159 160 2.434359 GGAAGGTGCGAACGGAGG 60.434 66.667 0.00 0.00 0.00 4.30
160 161 2.654877 GAAGGTGCGAACGGAGGA 59.345 61.111 0.00 0.00 0.00 3.71
161 162 1.005394 GAAGGTGCGAACGGAGGAA 60.005 57.895 0.00 0.00 0.00 3.36
162 163 1.004918 AAGGTGCGAACGGAGGAAG 60.005 57.895 0.00 0.00 0.00 3.46
163 164 1.469335 AAGGTGCGAACGGAGGAAGA 61.469 55.000 0.00 0.00 0.00 2.87
164 165 1.005394 GGTGCGAACGGAGGAAGAA 60.005 57.895 0.00 0.00 0.00 2.52
165 166 0.391263 GGTGCGAACGGAGGAAGAAT 60.391 55.000 0.00 0.00 0.00 2.40
166 167 0.721718 GTGCGAACGGAGGAAGAATG 59.278 55.000 0.00 0.00 0.00 2.67
167 168 0.391130 TGCGAACGGAGGAAGAATGG 60.391 55.000 0.00 0.00 0.00 3.16
168 169 0.391263 GCGAACGGAGGAAGAATGGT 60.391 55.000 0.00 0.00 0.00 3.55
169 170 1.359848 CGAACGGAGGAAGAATGGTG 58.640 55.000 0.00 0.00 0.00 4.17
170 171 1.739067 GAACGGAGGAAGAATGGTGG 58.261 55.000 0.00 0.00 0.00 4.61
171 172 0.322546 AACGGAGGAAGAATGGTGGC 60.323 55.000 0.00 0.00 0.00 5.01
172 173 1.815421 CGGAGGAAGAATGGTGGCG 60.815 63.158 0.00 0.00 0.00 5.69
173 174 1.452108 GGAGGAAGAATGGTGGCGG 60.452 63.158 0.00 0.00 0.00 6.13
174 175 1.452108 GAGGAAGAATGGTGGCGGG 60.452 63.158 0.00 0.00 0.00 6.13
175 176 1.910580 GAGGAAGAATGGTGGCGGGA 61.911 60.000 0.00 0.00 0.00 5.14
176 177 1.452108 GGAAGAATGGTGGCGGGAG 60.452 63.158 0.00 0.00 0.00 4.30
177 178 1.299976 GAAGAATGGTGGCGGGAGT 59.700 57.895 0.00 0.00 0.00 3.85
178 179 0.322546 GAAGAATGGTGGCGGGAGTT 60.323 55.000 0.00 0.00 0.00 3.01
179 180 0.609131 AAGAATGGTGGCGGGAGTTG 60.609 55.000 0.00 0.00 0.00 3.16
180 181 2.035626 AATGGTGGCGGGAGTTGG 59.964 61.111 0.00 0.00 0.00 3.77
181 182 3.583882 AATGGTGGCGGGAGTTGGG 62.584 63.158 0.00 0.00 0.00 4.12
189 190 4.410400 GGGAGTTGGGGCGGTGAG 62.410 72.222 0.00 0.00 0.00 3.51
190 191 4.410400 GGAGTTGGGGCGGTGAGG 62.410 72.222 0.00 0.00 0.00 3.86
191 192 4.410400 GAGTTGGGGCGGTGAGGG 62.410 72.222 0.00 0.00 0.00 4.30
192 193 4.974438 AGTTGGGGCGGTGAGGGA 62.974 66.667 0.00 0.00 0.00 4.20
193 194 4.410400 GTTGGGGCGGTGAGGGAG 62.410 72.222 0.00 0.00 0.00 4.30
200 201 2.365105 CGGTGAGGGAGGGGCTAA 60.365 66.667 0.00 0.00 0.00 3.09
201 202 1.993391 CGGTGAGGGAGGGGCTAAA 60.993 63.158 0.00 0.00 0.00 1.85
202 203 1.345715 CGGTGAGGGAGGGGCTAAAT 61.346 60.000 0.00 0.00 0.00 1.40
203 204 1.815757 GGTGAGGGAGGGGCTAAATA 58.184 55.000 0.00 0.00 0.00 1.40
204 205 1.700186 GGTGAGGGAGGGGCTAAATAG 59.300 57.143 0.00 0.00 0.00 1.73
205 206 1.700186 GTGAGGGAGGGGCTAAATAGG 59.300 57.143 0.00 0.00 0.00 2.57
206 207 1.363246 GAGGGAGGGGCTAAATAGGG 58.637 60.000 0.00 0.00 0.00 3.53
207 208 0.103876 AGGGAGGGGCTAAATAGGGG 60.104 60.000 0.00 0.00 0.00 4.79
208 209 1.140772 GGGAGGGGCTAAATAGGGGG 61.141 65.000 0.00 0.00 0.00 5.40
209 210 0.403008 GGAGGGGCTAAATAGGGGGT 60.403 60.000 0.00 0.00 0.00 4.95
210 211 0.771755 GAGGGGCTAAATAGGGGGTG 59.228 60.000 0.00 0.00 0.00 4.61
211 212 0.701310 AGGGGCTAAATAGGGGGTGG 60.701 60.000 0.00 0.00 0.00 4.61
212 213 0.699922 GGGGCTAAATAGGGGGTGGA 60.700 60.000 0.00 0.00 0.00 4.02
213 214 0.771755 GGGCTAAATAGGGGGTGGAG 59.228 60.000 0.00 0.00 0.00 3.86
214 215 0.110678 GGCTAAATAGGGGGTGGAGC 59.889 60.000 0.00 0.00 0.00 4.70
215 216 0.250338 GCTAAATAGGGGGTGGAGCG 60.250 60.000 0.00 0.00 0.00 5.03
216 217 0.396811 CTAAATAGGGGGTGGAGCGG 59.603 60.000 0.00 0.00 0.00 5.52
217 218 1.702022 TAAATAGGGGGTGGAGCGGC 61.702 60.000 0.00 0.00 0.00 6.53
218 219 4.815973 ATAGGGGGTGGAGCGGCA 62.816 66.667 1.45 0.00 0.00 5.69
219 220 4.815973 TAGGGGGTGGAGCGGCAT 62.816 66.667 1.45 0.00 0.00 4.40
222 223 4.864334 GGGGTGGAGCGGCATGAG 62.864 72.222 1.45 0.00 0.00 2.90
223 224 4.864334 GGGTGGAGCGGCATGAGG 62.864 72.222 1.45 0.00 0.00 3.86
224 225 4.101448 GGTGGAGCGGCATGAGGT 62.101 66.667 1.45 0.00 0.00 3.85
225 226 2.821366 GTGGAGCGGCATGAGGTG 60.821 66.667 1.45 0.00 0.00 4.00
226 227 3.002583 TGGAGCGGCATGAGGTGA 61.003 61.111 1.45 0.00 0.00 4.02
227 228 2.202987 GGAGCGGCATGAGGTGAG 60.203 66.667 1.45 0.00 0.00 3.51
228 229 2.894387 GAGCGGCATGAGGTGAGC 60.894 66.667 1.45 0.00 34.55 4.26
229 230 4.479993 AGCGGCATGAGGTGAGCC 62.480 66.667 1.45 0.00 44.89 4.70
232 233 3.785859 GGCATGAGGTGAGCCGGA 61.786 66.667 5.05 0.00 38.86 5.14
233 234 2.268920 GCATGAGGTGAGCCGGAA 59.731 61.111 5.05 0.00 40.50 4.30
234 235 1.153086 GCATGAGGTGAGCCGGAAT 60.153 57.895 5.05 0.00 40.50 3.01
235 236 1.162800 GCATGAGGTGAGCCGGAATC 61.163 60.000 5.05 2.10 40.50 2.52
236 237 0.533755 CATGAGGTGAGCCGGAATCC 60.534 60.000 5.05 0.77 40.50 3.01
237 238 0.692419 ATGAGGTGAGCCGGAATCCT 60.692 55.000 5.05 6.63 40.50 3.24
238 239 1.330655 TGAGGTGAGCCGGAATCCTC 61.331 60.000 20.70 20.70 43.27 3.71
239 240 2.034048 GAGGTGAGCCGGAATCCTCC 62.034 65.000 5.05 7.89 38.81 4.30
240 241 2.066999 GGTGAGCCGGAATCCTCCT 61.067 63.158 5.05 0.00 39.93 3.69
241 242 1.144936 GTGAGCCGGAATCCTCCTG 59.855 63.158 5.05 0.00 39.93 3.86
244 245 4.918201 GCCGGAATCCTCCTGCCG 62.918 72.222 5.05 0.00 44.10 5.69
245 246 3.154473 CCGGAATCCTCCTGCCGA 61.154 66.667 0.00 0.00 46.29 5.54
246 247 2.511452 CCGGAATCCTCCTGCCGAT 61.511 63.158 0.00 0.00 46.29 4.18
247 248 1.447643 CGGAATCCTCCTGCCGATT 59.552 57.895 0.00 0.00 46.29 3.34
248 249 0.179045 CGGAATCCTCCTGCCGATTT 60.179 55.000 0.00 0.00 46.29 2.17
249 250 1.747206 CGGAATCCTCCTGCCGATTTT 60.747 52.381 0.00 0.00 46.29 1.82
250 251 2.379005 GGAATCCTCCTGCCGATTTTT 58.621 47.619 0.00 0.00 38.88 1.94
251 252 2.359214 GGAATCCTCCTGCCGATTTTTC 59.641 50.000 0.00 0.00 38.88 2.29
252 253 1.668419 ATCCTCCTGCCGATTTTTCG 58.332 50.000 0.00 0.00 0.00 3.46
281 282 4.959596 GAGCTCGCGCCATCTCCC 62.960 72.222 0.00 0.00 36.60 4.30
284 285 4.598894 CTCGCGCCATCTCCCCTG 62.599 72.222 0.00 0.00 0.00 4.45
287 288 4.925861 GCGCCATCTCCCCTGCTC 62.926 72.222 0.00 0.00 0.00 4.26
288 289 4.598894 CGCCATCTCCCCTGCTCG 62.599 72.222 0.00 0.00 0.00 5.03
289 290 4.925861 GCCATCTCCCCTGCTCGC 62.926 72.222 0.00 0.00 0.00 5.03
290 291 3.473647 CCATCTCCCCTGCTCGCA 61.474 66.667 0.00 0.00 0.00 5.10
291 292 2.202987 CATCTCCCCTGCTCGCAC 60.203 66.667 0.00 0.00 0.00 5.34
292 293 3.842923 ATCTCCCCTGCTCGCACG 61.843 66.667 0.00 0.00 0.00 5.34
294 295 4.504916 CTCCCCTGCTCGCACGAG 62.505 72.222 15.50 15.50 44.56 4.18
303 304 3.760035 TCGCACGAGGGGAGAAGC 61.760 66.667 0.00 0.00 33.99 3.86
308 309 4.856607 CGAGGGGAGAAGCGCGTC 62.857 72.222 15.94 15.94 39.93 5.19
309 310 4.856607 GAGGGGAGAAGCGCGTCG 62.857 72.222 17.57 0.00 35.19 5.12
337 338 4.554363 CCTCGCGAGGTACTGCCG 62.554 72.222 40.77 17.62 41.55 5.69
338 339 3.506096 CTCGCGAGGTACTGCCGA 61.506 66.667 28.40 0.00 41.55 5.54
339 340 3.047718 CTCGCGAGGTACTGCCGAA 62.048 63.158 28.40 0.00 41.55 4.30
340 341 2.104331 CGCGAGGTACTGCCGAAT 59.896 61.111 0.00 0.00 41.55 3.34
341 342 1.944676 CGCGAGGTACTGCCGAATC 60.945 63.158 0.00 0.00 41.55 2.52
342 343 1.944676 GCGAGGTACTGCCGAATCG 60.945 63.158 0.00 0.00 41.55 3.34
343 344 1.432251 CGAGGTACTGCCGAATCGT 59.568 57.895 0.82 0.00 41.55 3.73
344 345 0.866061 CGAGGTACTGCCGAATCGTG 60.866 60.000 0.82 0.00 41.55 4.35
345 346 1.146358 GAGGTACTGCCGAATCGTGC 61.146 60.000 0.82 5.55 41.55 5.34
346 347 2.514013 GGTACTGCCGAATCGTGCG 61.514 63.158 0.82 4.56 0.00 5.34
347 348 1.804326 GTACTGCCGAATCGTGCGT 60.804 57.895 0.82 9.55 0.00 5.24
348 349 1.080366 TACTGCCGAATCGTGCGTT 60.080 52.632 0.82 0.00 0.00 4.84
349 350 0.668096 TACTGCCGAATCGTGCGTTT 60.668 50.000 0.82 0.00 0.00 3.60
350 351 1.225745 CTGCCGAATCGTGCGTTTC 60.226 57.895 0.82 5.59 0.00 2.78
351 352 2.097728 GCCGAATCGTGCGTTTCC 59.902 61.111 0.82 0.00 0.00 3.13
352 353 2.782615 CCGAATCGTGCGTTTCCC 59.217 61.111 0.82 0.00 0.00 3.97
353 354 2.746803 CCGAATCGTGCGTTTCCCC 61.747 63.158 0.82 0.00 0.00 4.81
354 355 1.740296 CGAATCGTGCGTTTCCCCT 60.740 57.895 9.03 0.00 0.00 4.79
355 356 1.794222 GAATCGTGCGTTTCCCCTG 59.206 57.895 4.58 0.00 0.00 4.45
356 357 1.644786 GAATCGTGCGTTTCCCCTGG 61.645 60.000 4.58 0.00 0.00 4.45
357 358 3.622060 ATCGTGCGTTTCCCCTGGG 62.622 63.158 5.50 5.50 0.00 4.45
362 363 4.740822 CGTTTCCCCTGGGCCTGG 62.741 72.222 21.83 21.83 34.68 4.45
375 376 4.673375 CCTGGCCTGCAGGTGCTT 62.673 66.667 32.81 0.00 42.66 3.91
376 377 2.599578 CTGGCCTGCAGGTGCTTT 60.600 61.111 32.81 0.00 42.66 3.51
377 378 1.303561 CTGGCCTGCAGGTGCTTTA 60.304 57.895 32.81 12.54 42.66 1.85
378 379 0.895100 CTGGCCTGCAGGTGCTTTAA 60.895 55.000 32.81 10.62 42.66 1.52
379 380 0.895100 TGGCCTGCAGGTGCTTTAAG 60.895 55.000 32.81 5.52 42.66 1.85
380 381 0.895559 GGCCTGCAGGTGCTTTAAGT 60.896 55.000 32.81 0.00 42.66 2.24
381 382 0.961753 GCCTGCAGGTGCTTTAAGTT 59.038 50.000 32.81 0.00 42.66 2.66
382 383 1.341209 GCCTGCAGGTGCTTTAAGTTT 59.659 47.619 32.81 0.00 42.66 2.66
383 384 2.608016 GCCTGCAGGTGCTTTAAGTTTC 60.608 50.000 32.81 8.48 42.66 2.78
384 385 2.350772 CCTGCAGGTGCTTTAAGTTTCG 60.351 50.000 25.53 0.00 42.66 3.46
385 386 2.290641 CTGCAGGTGCTTTAAGTTTCGT 59.709 45.455 5.57 0.00 42.66 3.85
386 387 2.032799 TGCAGGTGCTTTAAGTTTCGTG 59.967 45.455 3.18 0.00 42.66 4.35
387 388 2.650608 CAGGTGCTTTAAGTTTCGTGC 58.349 47.619 0.00 0.00 0.00 5.34
388 389 1.263217 AGGTGCTTTAAGTTTCGTGCG 59.737 47.619 0.00 0.00 0.00 5.34
389 390 1.262151 GGTGCTTTAAGTTTCGTGCGA 59.738 47.619 0.00 0.00 0.00 5.10
390 391 2.095919 GGTGCTTTAAGTTTCGTGCGAT 60.096 45.455 0.00 0.00 0.00 4.58
391 392 2.902484 GTGCTTTAAGTTTCGTGCGATG 59.098 45.455 0.00 0.00 0.00 3.84
392 393 1.905049 GCTTTAAGTTTCGTGCGATGC 59.095 47.619 0.00 0.00 0.00 3.91
393 394 2.158143 CTTTAAGTTTCGTGCGATGCG 58.842 47.619 0.00 0.00 0.00 4.73
394 395 0.440758 TTAAGTTTCGTGCGATGCGG 59.559 50.000 0.00 0.00 0.00 5.69
395 396 1.355796 TAAGTTTCGTGCGATGCGGG 61.356 55.000 0.00 0.00 0.00 6.13
396 397 4.811761 GTTTCGTGCGATGCGGGC 62.812 66.667 0.00 0.00 0.00 6.13
409 410 2.102749 CGGGCCGCACAATGAATG 59.897 61.111 15.42 0.00 0.00 2.67
410 411 2.202783 GGGCCGCACAATGAATGC 60.203 61.111 0.00 0.00 39.81 3.56
411 412 2.572812 GGCCGCACAATGAATGCA 59.427 55.556 0.00 0.00 43.57 3.96
412 413 1.517694 GGCCGCACAATGAATGCAG 60.518 57.895 0.00 0.00 43.57 4.41
413 414 1.517694 GCCGCACAATGAATGCAGG 60.518 57.895 0.00 1.35 43.57 4.85
414 415 1.936436 GCCGCACAATGAATGCAGGA 61.936 55.000 10.58 0.00 43.57 3.86
415 416 0.527113 CCGCACAATGAATGCAGGAA 59.473 50.000 0.00 0.00 43.57 3.36
416 417 1.067706 CCGCACAATGAATGCAGGAAA 60.068 47.619 0.00 0.00 43.57 3.13
417 418 1.987770 CGCACAATGAATGCAGGAAAC 59.012 47.619 0.00 0.00 43.57 2.78
418 419 2.340337 GCACAATGAATGCAGGAAACC 58.660 47.619 0.00 0.00 42.88 3.27
419 420 2.288948 GCACAATGAATGCAGGAAACCA 60.289 45.455 0.00 0.00 42.88 3.67
420 421 3.803021 GCACAATGAATGCAGGAAACCAA 60.803 43.478 0.00 0.00 42.88 3.67
421 422 4.378774 CACAATGAATGCAGGAAACCAAA 58.621 39.130 0.00 0.00 0.00 3.28
422 423 4.211794 CACAATGAATGCAGGAAACCAAAC 59.788 41.667 0.00 0.00 0.00 2.93
423 424 2.791383 TGAATGCAGGAAACCAAACG 57.209 45.000 0.00 0.00 0.00 3.60
424 425 1.339610 TGAATGCAGGAAACCAAACGG 59.660 47.619 0.00 0.00 0.00 4.44
425 426 1.611491 GAATGCAGGAAACCAAACGGA 59.389 47.619 0.00 0.00 0.00 4.69
426 427 0.958822 ATGCAGGAAACCAAACGGAC 59.041 50.000 0.00 0.00 0.00 4.79
427 428 1.104577 TGCAGGAAACCAAACGGACC 61.105 55.000 0.00 0.00 0.00 4.46
428 429 1.104577 GCAGGAAACCAAACGGACCA 61.105 55.000 0.00 0.00 0.00 4.02
429 430 1.394618 CAGGAAACCAAACGGACCAA 58.605 50.000 0.00 0.00 0.00 3.67
430 431 1.751924 CAGGAAACCAAACGGACCAAA 59.248 47.619 0.00 0.00 0.00 3.28
431 432 2.364002 CAGGAAACCAAACGGACCAAAT 59.636 45.455 0.00 0.00 0.00 2.32
432 433 3.035363 AGGAAACCAAACGGACCAAATT 58.965 40.909 0.00 0.00 0.00 1.82
433 434 3.069016 AGGAAACCAAACGGACCAAATTC 59.931 43.478 0.00 0.00 0.00 2.17
434 435 3.069016 GGAAACCAAACGGACCAAATTCT 59.931 43.478 0.00 0.00 0.00 2.40
435 436 4.442332 GGAAACCAAACGGACCAAATTCTT 60.442 41.667 0.00 0.00 0.00 2.52
436 437 4.316205 AACCAAACGGACCAAATTCTTC 57.684 40.909 0.00 0.00 0.00 2.87
437 438 2.626266 ACCAAACGGACCAAATTCTTCC 59.374 45.455 0.00 0.00 0.00 3.46
438 439 2.029380 CCAAACGGACCAAATTCTTCCC 60.029 50.000 0.00 0.00 0.00 3.97
439 440 1.530323 AACGGACCAAATTCTTCCCG 58.470 50.000 0.00 0.00 42.30 5.14
440 441 0.958876 ACGGACCAAATTCTTCCCGC 60.959 55.000 0.00 0.00 40.48 6.13
441 442 0.676782 CGGACCAAATTCTTCCCGCT 60.677 55.000 0.00 0.00 0.00 5.52
442 443 1.095600 GGACCAAATTCTTCCCGCTC 58.904 55.000 0.00 0.00 0.00 5.03
443 444 0.727398 GACCAAATTCTTCCCGCTCG 59.273 55.000 0.00 0.00 0.00 5.03
444 445 0.676782 ACCAAATTCTTCCCGCTCGG 60.677 55.000 0.48 0.48 0.00 4.63
482 483 3.532155 GGCAACCAAACACGCCCA 61.532 61.111 0.00 0.00 38.67 5.36
483 484 2.733945 GCAACCAAACACGCCCAT 59.266 55.556 0.00 0.00 0.00 4.00
484 485 1.528292 GGCAACCAAACACGCCCATA 61.528 55.000 0.00 0.00 38.67 2.74
485 486 0.315568 GCAACCAAACACGCCCATAA 59.684 50.000 0.00 0.00 0.00 1.90
486 487 1.269831 GCAACCAAACACGCCCATAAA 60.270 47.619 0.00 0.00 0.00 1.40
487 488 2.803492 GCAACCAAACACGCCCATAAAA 60.803 45.455 0.00 0.00 0.00 1.52
488 489 3.458189 CAACCAAACACGCCCATAAAAA 58.542 40.909 0.00 0.00 0.00 1.94
510 511 3.790437 CCCAGCCCAGACGCATCT 61.790 66.667 0.00 0.00 34.57 2.90
511 512 2.270205 CCAGCCCAGACGCATCTT 59.730 61.111 0.00 0.00 30.42 2.40
512 513 2.110967 CCAGCCCAGACGCATCTTG 61.111 63.158 0.00 0.00 30.42 3.02
513 514 1.376424 CAGCCCAGACGCATCTTGT 60.376 57.895 0.00 0.00 30.42 3.16
514 515 1.376424 AGCCCAGACGCATCTTGTG 60.376 57.895 0.00 0.00 30.42 3.33
515 516 1.672356 GCCCAGACGCATCTTGTGT 60.672 57.895 0.00 0.00 44.78 3.72
516 517 1.915614 GCCCAGACGCATCTTGTGTG 61.916 60.000 0.00 0.00 41.77 3.82
550 551 0.856311 ACCTACCCACCTCTCCTCCT 60.856 60.000 0.00 0.00 0.00 3.69
552 553 0.631753 CTACCCACCTCTCCTCCTCA 59.368 60.000 0.00 0.00 0.00 3.86
554 555 1.687493 CCCACCTCTCCTCCTCACC 60.687 68.421 0.00 0.00 0.00 4.02
555 556 1.687493 CCACCTCTCCTCCTCACCC 60.687 68.421 0.00 0.00 0.00 4.61
556 557 1.390125 CACCTCTCCTCCTCACCCT 59.610 63.158 0.00 0.00 0.00 4.34
557 558 0.686112 CACCTCTCCTCCTCACCCTC 60.686 65.000 0.00 0.00 0.00 4.30
558 559 1.149782 ACCTCTCCTCCTCACCCTCA 61.150 60.000 0.00 0.00 0.00 3.86
559 560 0.396974 CCTCTCCTCCTCACCCTCAG 60.397 65.000 0.00 0.00 0.00 3.35
560 561 0.396974 CTCTCCTCCTCACCCTCAGG 60.397 65.000 0.00 0.00 40.04 3.86
594 610 2.447572 TCACTGCCACCCACTCCA 60.448 61.111 0.00 0.00 0.00 3.86
640 666 4.504916 CTCCAGTCCAGAGCGCCG 62.505 72.222 2.29 0.00 0.00 6.46
749 775 4.776322 TGCCGCCCAAGTCCATCG 62.776 66.667 0.00 0.00 0.00 3.84
863 889 1.154016 CTCTACGGTCGCAGTGGTG 60.154 63.158 0.00 0.00 0.00 4.17
871 915 2.046988 CGCAGTGGTGATGGCTCA 60.047 61.111 0.00 0.00 0.00 4.26
969 1019 4.308526 CGGCATCTTTCTGCAGGT 57.691 55.556 15.13 0.00 44.12 4.00
1038 1089 1.797211 GCTACGCTATGACGGCCTCT 61.797 60.000 0.00 0.00 37.37 3.69
1050 1101 1.149401 GGCCTCTATCTGCAACCCC 59.851 63.158 0.00 0.00 0.00 4.95
1051 1102 1.635817 GGCCTCTATCTGCAACCCCA 61.636 60.000 0.00 0.00 0.00 4.96
1074 1125 1.414181 ACTCGTCAATATGCTCCCCTG 59.586 52.381 0.00 0.00 0.00 4.45
1080 1131 0.855598 AATATGCTCCCCTGCACCAT 59.144 50.000 0.00 0.00 46.33 3.55
1147 1198 1.202268 ACGAGTACCGACTATTGCTGC 60.202 52.381 10.17 0.00 41.76 5.25
1194 1248 1.608283 GCTCAAAGTGGCTCCTACGTT 60.608 52.381 0.00 0.00 0.00 3.99
1349 1403 1.546029 CACCATCTCAGAGTCGTTCCA 59.454 52.381 0.00 0.00 0.00 3.53
1488 1555 2.093235 GCTGGACTATGAGAGCCAAGTT 60.093 50.000 0.00 0.00 32.90 2.66
1675 1748 4.074970 CAAGTTGGTTGCTAGTCTCCATT 58.925 43.478 0.00 0.00 0.00 3.16
1704 1777 1.062880 CTCTGTCCTACTCGACTTCGC 59.937 57.143 0.00 0.00 39.60 4.70
1788 1862 2.557317 TCACCTTTCGTTTGACCAGAC 58.443 47.619 0.00 0.00 0.00 3.51
1923 2036 6.049790 CACTCTATAAGCCCACTAGTTTTCC 58.950 44.000 0.00 0.00 0.00 3.13
2121 2241 9.778993 CATGTCTATGTTTTCATTAACTGAAGG 57.221 33.333 0.00 0.00 44.48 3.46
2134 2254 7.607991 TCATTAACTGAAGGATGGACTTCTTTC 59.392 37.037 7.38 3.96 45.49 2.62
2361 2578 8.723942 ATTACCTGCTTGTCTTCTTAATACTG 57.276 34.615 0.00 0.00 0.00 2.74
2364 2581 6.651225 ACCTGCTTGTCTTCTTAATACTGAAC 59.349 38.462 0.00 0.00 0.00 3.18
2447 2675 9.970553 ATGCATATTATCATCTTATTGACCAGT 57.029 29.630 0.00 0.00 0.00 4.00
2453 2682 5.939764 TCATCTTATTGACCAGTAGCAGT 57.060 39.130 0.00 0.00 0.00 4.40
2470 2699 8.033038 CAGTAGCAGTACCTGAACTTATACAAA 58.967 37.037 0.00 0.00 32.44 2.83
2566 2798 7.769044 AGGCATCGAAACATACTGTTATAGTTT 59.231 33.333 0.00 0.00 40.14 2.66
2680 2928 7.941238 AGAAGATATGTTATAATGTGCAGGCTT 59.059 33.333 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.816984 AGCTGCAGCCATGGCCTC 62.817 66.667 34.39 23.95 43.38 4.70
1 2 4.377760 AAGCTGCAGCCATGGCCT 62.378 61.111 34.39 19.41 43.38 5.19
2 3 4.143333 CAAGCTGCAGCCATGGCC 62.143 66.667 34.39 19.25 43.38 5.36
3 4 3.064987 CTCAAGCTGCAGCCATGGC 62.065 63.158 34.39 30.12 43.38 4.40
4 5 2.415608 CCTCAAGCTGCAGCCATGG 61.416 63.158 34.39 25.32 43.38 3.66
5 6 1.378119 TCCTCAAGCTGCAGCCATG 60.378 57.895 34.39 30.51 43.38 3.66
6 7 1.378250 GTCCTCAAGCTGCAGCCAT 60.378 57.895 34.39 21.47 43.38 4.40
7 8 2.033141 GTCCTCAAGCTGCAGCCA 59.967 61.111 34.39 17.98 43.38 4.75
8 9 3.123620 CGTCCTCAAGCTGCAGCC 61.124 66.667 34.39 16.40 43.38 4.85
9 10 2.047844 TCGTCCTCAAGCTGCAGC 60.048 61.111 31.53 31.53 42.49 5.25
10 11 1.447489 CCTCGTCCTCAAGCTGCAG 60.447 63.158 10.11 10.11 0.00 4.41
11 12 2.659016 CCTCGTCCTCAAGCTGCA 59.341 61.111 1.02 0.00 0.00 4.41
12 13 2.125350 CCCTCGTCCTCAAGCTGC 60.125 66.667 0.00 0.00 0.00 5.25
13 14 2.581354 CCCCTCGTCCTCAAGCTG 59.419 66.667 0.00 0.00 0.00 4.24
14 15 2.685380 CCCCCTCGTCCTCAAGCT 60.685 66.667 0.00 0.00 0.00 3.74
28 29 4.029809 CTTCCACCACCGTCCCCC 62.030 72.222 0.00 0.00 0.00 5.40
29 30 2.298661 ATCTTCCACCACCGTCCCC 61.299 63.158 0.00 0.00 0.00 4.81
30 31 1.078426 CATCTTCCACCACCGTCCC 60.078 63.158 0.00 0.00 0.00 4.46
31 32 0.323629 TTCATCTTCCACCACCGTCC 59.676 55.000 0.00 0.00 0.00 4.79
32 33 1.439679 GTTCATCTTCCACCACCGTC 58.560 55.000 0.00 0.00 0.00 4.79
33 34 0.036306 GGTTCATCTTCCACCACCGT 59.964 55.000 0.00 0.00 0.00 4.83
34 35 0.676782 GGGTTCATCTTCCACCACCG 60.677 60.000 0.00 0.00 31.50 4.94
35 36 0.323451 GGGGTTCATCTTCCACCACC 60.323 60.000 0.00 0.00 31.50 4.61
36 37 0.676782 CGGGGTTCATCTTCCACCAC 60.677 60.000 0.00 0.00 31.50 4.16
37 38 1.682849 CGGGGTTCATCTTCCACCA 59.317 57.895 0.00 0.00 31.50 4.17
38 39 1.077716 CCGGGGTTCATCTTCCACC 60.078 63.158 0.00 0.00 0.00 4.61
39 40 1.749258 GCCGGGGTTCATCTTCCAC 60.749 63.158 2.18 0.00 0.00 4.02
40 41 2.674754 GCCGGGGTTCATCTTCCA 59.325 61.111 2.18 0.00 0.00 3.53
41 42 2.124278 GGCCGGGGTTCATCTTCC 60.124 66.667 2.18 0.00 0.00 3.46
42 43 2.513897 CGGCCGGGGTTCATCTTC 60.514 66.667 20.10 0.00 0.00 2.87
43 44 4.109675 CCGGCCGGGGTTCATCTT 62.110 66.667 37.42 0.00 0.00 2.40
54 55 4.821589 GAGCTCCTTCACCGGCCG 62.822 72.222 21.04 21.04 0.00 6.13
55 56 3.394836 AGAGCTCCTTCACCGGCC 61.395 66.667 10.93 0.00 0.00 6.13
56 57 2.125350 CAGAGCTCCTTCACCGGC 60.125 66.667 10.93 0.00 0.00 6.13
57 58 2.581354 CCAGAGCTCCTTCACCGG 59.419 66.667 10.93 0.00 0.00 5.28
58 59 2.125350 GCCAGAGCTCCTTCACCG 60.125 66.667 10.93 0.00 35.50 4.94
59 60 2.125350 CGCCAGAGCTCCTTCACC 60.125 66.667 10.93 0.00 36.60 4.02
60 61 2.817396 GCGCCAGAGCTCCTTCAC 60.817 66.667 10.93 0.00 36.60 3.18
61 62 4.087892 GGCGCCAGAGCTCCTTCA 62.088 66.667 24.80 0.00 40.94 3.02
81 82 4.467084 TTCATCGGCCGGCTGTCC 62.467 66.667 33.59 12.96 0.00 4.02
82 83 3.195698 GTTCATCGGCCGGCTGTC 61.196 66.667 33.59 13.36 0.00 3.51
83 84 3.329542 ATGTTCATCGGCCGGCTGT 62.330 57.895 33.59 18.87 0.00 4.40
84 85 2.514592 ATGTTCATCGGCCGGCTG 60.515 61.111 30.18 30.18 0.00 4.85
85 86 2.514592 CATGTTCATCGGCCGGCT 60.515 61.111 28.56 10.71 0.00 5.52
86 87 4.256090 GCATGTTCATCGGCCGGC 62.256 66.667 27.83 21.18 0.00 6.13
87 88 3.940640 CGCATGTTCATCGGCCGG 61.941 66.667 27.83 10.69 0.00 6.13
88 89 4.596180 GCGCATGTTCATCGGCCG 62.596 66.667 22.12 22.12 0.00 6.13
89 90 4.256090 GGCGCATGTTCATCGGCC 62.256 66.667 10.83 0.00 41.93 6.13
90 91 4.596180 CGGCGCATGTTCATCGGC 62.596 66.667 10.83 15.15 43.86 5.54
91 92 4.596180 GCGGCGCATGTTCATCGG 62.596 66.667 29.21 0.00 0.00 4.18
92 93 1.761244 TAAGCGGCGCATGTTCATCG 61.761 55.000 35.02 1.11 0.00 3.84
93 94 0.316196 GTAAGCGGCGCATGTTCATC 60.316 55.000 35.02 10.91 0.00 2.92
94 95 1.714899 GGTAAGCGGCGCATGTTCAT 61.715 55.000 35.02 8.42 0.00 2.57
95 96 2.395360 GGTAAGCGGCGCATGTTCA 61.395 57.895 35.02 3.44 0.00 3.18
96 97 2.106683 AGGTAAGCGGCGCATGTTC 61.107 57.895 35.02 18.20 0.00 3.18
97 98 2.046314 AGGTAAGCGGCGCATGTT 60.046 55.556 35.02 21.72 0.00 2.71
98 99 2.819595 CAGGTAAGCGGCGCATGT 60.820 61.111 35.02 20.55 0.00 3.21
99 100 4.241999 GCAGGTAAGCGGCGCATG 62.242 66.667 35.02 22.73 0.00 4.06
100 101 4.473520 AGCAGGTAAGCGGCGCAT 62.474 61.111 35.02 25.83 40.15 4.73
103 104 4.796231 ACGAGCAGGTAAGCGGCG 62.796 66.667 0.51 0.51 40.92 6.46
104 105 2.886124 GACGAGCAGGTAAGCGGC 60.886 66.667 0.00 0.00 40.15 6.53
105 106 2.579787 CGACGAGCAGGTAAGCGG 60.580 66.667 0.00 0.00 40.15 5.52
106 107 2.579787 CCGACGAGCAGGTAAGCG 60.580 66.667 0.00 0.00 40.15 4.68
107 108 1.805945 CACCGACGAGCAGGTAAGC 60.806 63.158 0.00 0.00 39.00 3.09
108 109 1.805945 GCACCGACGAGCAGGTAAG 60.806 63.158 0.00 0.00 39.00 2.34
109 110 2.260434 GCACCGACGAGCAGGTAA 59.740 61.111 0.00 0.00 39.00 2.85
110 111 2.675423 AGCACCGACGAGCAGGTA 60.675 61.111 13.37 0.00 39.00 3.08
111 112 4.363990 CAGCACCGACGAGCAGGT 62.364 66.667 13.37 0.00 42.34 4.00
112 113 3.362399 ATCAGCACCGACGAGCAGG 62.362 63.158 13.37 6.38 0.00 4.85
113 114 2.163390 CATCAGCACCGACGAGCAG 61.163 63.158 13.37 6.66 0.00 4.24
114 115 2.125952 CATCAGCACCGACGAGCA 60.126 61.111 13.37 0.00 0.00 4.26
115 116 3.558411 GCATCAGCACCGACGAGC 61.558 66.667 0.00 0.00 41.58 5.03
116 117 3.250323 CGCATCAGCACCGACGAG 61.250 66.667 0.00 0.00 42.27 4.18
140 141 4.367023 TCCGTTCGCACCTTCCCG 62.367 66.667 0.00 0.00 0.00 5.14
141 142 2.434359 CTCCGTTCGCACCTTCCC 60.434 66.667 0.00 0.00 0.00 3.97
142 143 2.434359 CCTCCGTTCGCACCTTCC 60.434 66.667 0.00 0.00 0.00 3.46
143 144 1.005394 TTCCTCCGTTCGCACCTTC 60.005 57.895 0.00 0.00 0.00 3.46
144 145 1.004918 CTTCCTCCGTTCGCACCTT 60.005 57.895 0.00 0.00 0.00 3.50
145 146 1.469335 TTCTTCCTCCGTTCGCACCT 61.469 55.000 0.00 0.00 0.00 4.00
146 147 0.391263 ATTCTTCCTCCGTTCGCACC 60.391 55.000 0.00 0.00 0.00 5.01
147 148 0.721718 CATTCTTCCTCCGTTCGCAC 59.278 55.000 0.00 0.00 0.00 5.34
148 149 0.391130 CCATTCTTCCTCCGTTCGCA 60.391 55.000 0.00 0.00 0.00 5.10
149 150 0.391263 ACCATTCTTCCTCCGTTCGC 60.391 55.000 0.00 0.00 0.00 4.70
150 151 1.359848 CACCATTCTTCCTCCGTTCG 58.640 55.000 0.00 0.00 0.00 3.95
151 152 1.739067 CCACCATTCTTCCTCCGTTC 58.261 55.000 0.00 0.00 0.00 3.95
152 153 0.322546 GCCACCATTCTTCCTCCGTT 60.323 55.000 0.00 0.00 0.00 4.44
153 154 1.299976 GCCACCATTCTTCCTCCGT 59.700 57.895 0.00 0.00 0.00 4.69
154 155 1.815421 CGCCACCATTCTTCCTCCG 60.815 63.158 0.00 0.00 0.00 4.63
155 156 1.452108 CCGCCACCATTCTTCCTCC 60.452 63.158 0.00 0.00 0.00 4.30
156 157 1.452108 CCCGCCACCATTCTTCCTC 60.452 63.158 0.00 0.00 0.00 3.71
157 158 1.915078 CTCCCGCCACCATTCTTCCT 61.915 60.000 0.00 0.00 0.00 3.36
158 159 1.452108 CTCCCGCCACCATTCTTCC 60.452 63.158 0.00 0.00 0.00 3.46
159 160 0.322546 AACTCCCGCCACCATTCTTC 60.323 55.000 0.00 0.00 0.00 2.87
160 161 0.609131 CAACTCCCGCCACCATTCTT 60.609 55.000 0.00 0.00 0.00 2.52
161 162 1.002134 CAACTCCCGCCACCATTCT 60.002 57.895 0.00 0.00 0.00 2.40
162 163 2.046285 CCAACTCCCGCCACCATTC 61.046 63.158 0.00 0.00 0.00 2.67
163 164 2.035626 CCAACTCCCGCCACCATT 59.964 61.111 0.00 0.00 0.00 3.16
164 165 4.047125 CCCAACTCCCGCCACCAT 62.047 66.667 0.00 0.00 0.00 3.55
172 173 4.410400 CTCACCGCCCCAACTCCC 62.410 72.222 0.00 0.00 0.00 4.30
173 174 4.410400 CCTCACCGCCCCAACTCC 62.410 72.222 0.00 0.00 0.00 3.85
174 175 4.410400 CCCTCACCGCCCCAACTC 62.410 72.222 0.00 0.00 0.00 3.01
175 176 4.974438 TCCCTCACCGCCCCAACT 62.974 66.667 0.00 0.00 0.00 3.16
176 177 4.410400 CTCCCTCACCGCCCCAAC 62.410 72.222 0.00 0.00 0.00 3.77
183 184 1.345715 ATTTAGCCCCTCCCTCACCG 61.346 60.000 0.00 0.00 0.00 4.94
184 185 1.700186 CTATTTAGCCCCTCCCTCACC 59.300 57.143 0.00 0.00 0.00 4.02
185 186 1.700186 CCTATTTAGCCCCTCCCTCAC 59.300 57.143 0.00 0.00 0.00 3.51
186 187 1.416013 CCCTATTTAGCCCCTCCCTCA 60.416 57.143 0.00 0.00 0.00 3.86
187 188 1.363246 CCCTATTTAGCCCCTCCCTC 58.637 60.000 0.00 0.00 0.00 4.30
188 189 0.103876 CCCCTATTTAGCCCCTCCCT 60.104 60.000 0.00 0.00 0.00 4.20
189 190 1.140772 CCCCCTATTTAGCCCCTCCC 61.141 65.000 0.00 0.00 0.00 4.30
190 191 0.403008 ACCCCCTATTTAGCCCCTCC 60.403 60.000 0.00 0.00 0.00 4.30
191 192 0.771755 CACCCCCTATTTAGCCCCTC 59.228 60.000 0.00 0.00 0.00 4.30
192 193 0.701310 CCACCCCCTATTTAGCCCCT 60.701 60.000 0.00 0.00 0.00 4.79
193 194 0.699922 TCCACCCCCTATTTAGCCCC 60.700 60.000 0.00 0.00 0.00 5.80
194 195 0.771755 CTCCACCCCCTATTTAGCCC 59.228 60.000 0.00 0.00 0.00 5.19
195 196 0.110678 GCTCCACCCCCTATTTAGCC 59.889 60.000 0.00 0.00 0.00 3.93
196 197 0.250338 CGCTCCACCCCCTATTTAGC 60.250 60.000 0.00 0.00 0.00 3.09
197 198 0.396811 CCGCTCCACCCCCTATTTAG 59.603 60.000 0.00 0.00 0.00 1.85
198 199 1.702022 GCCGCTCCACCCCCTATTTA 61.702 60.000 0.00 0.00 0.00 1.40
199 200 3.056754 GCCGCTCCACCCCCTATTT 62.057 63.158 0.00 0.00 0.00 1.40
200 201 3.489513 GCCGCTCCACCCCCTATT 61.490 66.667 0.00 0.00 0.00 1.73
201 202 4.815973 TGCCGCTCCACCCCCTAT 62.816 66.667 0.00 0.00 0.00 2.57
202 203 4.815973 ATGCCGCTCCACCCCCTA 62.816 66.667 0.00 0.00 0.00 3.53
205 206 4.864334 CTCATGCCGCTCCACCCC 62.864 72.222 0.00 0.00 0.00 4.95
206 207 4.864334 CCTCATGCCGCTCCACCC 62.864 72.222 0.00 0.00 0.00 4.61
207 208 4.101448 ACCTCATGCCGCTCCACC 62.101 66.667 0.00 0.00 0.00 4.61
208 209 2.821366 CACCTCATGCCGCTCCAC 60.821 66.667 0.00 0.00 0.00 4.02
209 210 3.002583 TCACCTCATGCCGCTCCA 61.003 61.111 0.00 0.00 0.00 3.86
210 211 2.202987 CTCACCTCATGCCGCTCC 60.203 66.667 0.00 0.00 0.00 4.70
211 212 2.894387 GCTCACCTCATGCCGCTC 60.894 66.667 0.00 0.00 0.00 5.03
212 213 4.479993 GGCTCACCTCATGCCGCT 62.480 66.667 0.00 0.00 37.11 5.52
215 216 2.615227 ATTCCGGCTCACCTCATGCC 62.615 60.000 0.00 0.00 42.94 4.40
216 217 1.153086 ATTCCGGCTCACCTCATGC 60.153 57.895 0.00 0.00 0.00 4.06
217 218 0.533755 GGATTCCGGCTCACCTCATG 60.534 60.000 0.00 0.00 0.00 3.07
218 219 0.692419 AGGATTCCGGCTCACCTCAT 60.692 55.000 0.00 0.00 0.00 2.90
219 220 1.306141 AGGATTCCGGCTCACCTCA 60.306 57.895 0.00 0.00 0.00 3.86
220 221 1.443828 GAGGATTCCGGCTCACCTC 59.556 63.158 16.46 16.46 39.90 3.85
221 222 2.066999 GGAGGATTCCGGCTCACCT 61.067 63.158 0.00 2.40 32.79 4.00
222 223 2.506472 GGAGGATTCCGGCTCACC 59.494 66.667 0.00 0.00 32.79 4.02
230 231 2.058593 AAAATCGGCAGGAGGATTCC 57.941 50.000 0.00 0.00 44.39 3.01
231 232 2.032178 CGAAAAATCGGCAGGAGGATTC 59.968 50.000 0.00 0.00 31.95 2.52
232 233 2.017049 CGAAAAATCGGCAGGAGGATT 58.983 47.619 0.00 0.00 34.48 3.01
233 234 1.668419 CGAAAAATCGGCAGGAGGAT 58.332 50.000 0.00 0.00 0.00 3.24
234 235 0.392461 CCGAAAAATCGGCAGGAGGA 60.392 55.000 4.12 0.00 46.76 3.71
235 236 2.098293 CCGAAAAATCGGCAGGAGG 58.902 57.895 4.12 0.00 46.76 4.30
243 244 2.640457 CGCGTCGCCGAAAAATCG 60.640 61.111 12.44 0.00 35.63 3.34
244 245 2.276430 CCGCGTCGCCGAAAAATC 60.276 61.111 12.44 0.00 35.63 2.17
245 246 3.795342 CCCGCGTCGCCGAAAAAT 61.795 61.111 12.44 0.00 35.63 1.82
267 268 4.598894 CAGGGGAGATGGCGCGAG 62.599 72.222 12.10 0.00 0.00 5.03
270 271 4.925861 GAGCAGGGGAGATGGCGC 62.926 72.222 0.00 0.00 0.00 6.53
271 272 4.598894 CGAGCAGGGGAGATGGCG 62.599 72.222 0.00 0.00 0.00 5.69
272 273 4.925861 GCGAGCAGGGGAGATGGC 62.926 72.222 0.00 0.00 0.00 4.40
273 274 3.473647 TGCGAGCAGGGGAGATGG 61.474 66.667 0.00 0.00 0.00 3.51
274 275 2.202987 GTGCGAGCAGGGGAGATG 60.203 66.667 0.00 0.00 0.00 2.90
275 276 3.842923 CGTGCGAGCAGGGGAGAT 61.843 66.667 9.63 0.00 0.00 2.75
277 278 4.504916 CTCGTGCGAGCAGGGGAG 62.505 72.222 11.78 8.68 34.53 4.30
282 283 4.504916 CTCCCCTCGTGCGAGCAG 62.505 72.222 15.32 8.95 40.69 4.24
284 285 3.708220 CTTCTCCCCTCGTGCGAGC 62.708 68.421 15.32 0.00 40.69 5.03
285 286 2.492090 CTTCTCCCCTCGTGCGAG 59.508 66.667 13.99 13.99 41.63 5.03
286 287 3.760035 GCTTCTCCCCTCGTGCGA 61.760 66.667 0.00 0.00 0.00 5.10
291 292 4.856607 GACGCGCTTCTCCCCTCG 62.857 72.222 5.73 0.00 0.00 4.63
292 293 4.856607 CGACGCGCTTCTCCCCTC 62.857 72.222 12.41 0.00 0.00 4.30
321 322 2.337749 ATTCGGCAGTACCTCGCGAG 62.338 60.000 29.06 29.06 35.61 5.03
322 323 2.332362 GATTCGGCAGTACCTCGCGA 62.332 60.000 9.26 9.26 35.61 5.87
323 324 1.944676 GATTCGGCAGTACCTCGCG 60.945 63.158 0.00 0.00 35.61 5.87
324 325 1.944676 CGATTCGGCAGTACCTCGC 60.945 63.158 0.00 0.00 35.61 5.03
325 326 0.866061 CACGATTCGGCAGTACCTCG 60.866 60.000 11.29 0.00 35.61 4.63
326 327 1.146358 GCACGATTCGGCAGTACCTC 61.146 60.000 11.29 0.00 35.61 3.85
327 328 1.153628 GCACGATTCGGCAGTACCT 60.154 57.895 11.29 0.00 35.61 3.08
328 329 2.514013 CGCACGATTCGGCAGTACC 61.514 63.158 11.29 0.00 0.00 3.34
329 330 1.349259 AACGCACGATTCGGCAGTAC 61.349 55.000 11.29 0.00 0.00 2.73
330 331 0.668096 AAACGCACGATTCGGCAGTA 60.668 50.000 11.29 0.00 0.00 2.74
331 332 1.897398 GAAACGCACGATTCGGCAGT 61.897 55.000 11.29 10.04 0.00 4.40
332 333 1.225745 GAAACGCACGATTCGGCAG 60.226 57.895 11.29 9.51 0.00 4.85
333 334 2.673114 GGAAACGCACGATTCGGCA 61.673 57.895 11.29 0.00 0.00 5.69
334 335 2.097728 GGAAACGCACGATTCGGC 59.902 61.111 11.29 9.85 0.00 5.54
335 336 2.746803 GGGGAAACGCACGATTCGG 61.747 63.158 11.29 0.73 43.99 4.30
336 337 2.782615 GGGGAAACGCACGATTCG 59.217 61.111 4.14 4.14 43.99 3.34
345 346 4.740822 CCAGGCCCAGGGGAAACG 62.741 72.222 7.91 0.00 37.50 3.60
359 360 0.895100 TTAAAGCACCTGCAGGCCAG 60.895 55.000 33.06 22.65 45.16 4.85
360 361 0.895100 CTTAAAGCACCTGCAGGCCA 60.895 55.000 33.06 8.51 45.16 5.36
361 362 0.895559 ACTTAAAGCACCTGCAGGCC 60.896 55.000 33.06 22.97 45.16 5.19
362 363 0.961753 AACTTAAAGCACCTGCAGGC 59.038 50.000 33.06 19.55 45.16 4.85
363 364 2.350772 CGAAACTTAAAGCACCTGCAGG 60.351 50.000 31.60 31.60 45.16 4.85
364 365 2.290641 ACGAAACTTAAAGCACCTGCAG 59.709 45.455 6.78 6.78 45.16 4.41
365 366 2.032799 CACGAAACTTAAAGCACCTGCA 59.967 45.455 0.00 0.00 45.16 4.41
366 367 2.650608 CACGAAACTTAAAGCACCTGC 58.349 47.619 0.00 0.00 42.49 4.85
367 368 2.650608 GCACGAAACTTAAAGCACCTG 58.349 47.619 0.00 0.00 0.00 4.00
368 369 1.263217 CGCACGAAACTTAAAGCACCT 59.737 47.619 0.00 0.00 0.00 4.00
369 370 1.262151 TCGCACGAAACTTAAAGCACC 59.738 47.619 0.00 0.00 0.00 5.01
370 371 2.656192 TCGCACGAAACTTAAAGCAC 57.344 45.000 0.00 0.00 0.00 4.40
371 372 2.664424 GCATCGCACGAAACTTAAAGCA 60.664 45.455 0.00 0.00 0.00 3.91
372 373 1.905049 GCATCGCACGAAACTTAAAGC 59.095 47.619 0.00 0.00 0.00 3.51
373 374 2.158143 CGCATCGCACGAAACTTAAAG 58.842 47.619 0.00 0.00 0.00 1.85
374 375 1.136197 CCGCATCGCACGAAACTTAAA 60.136 47.619 0.00 0.00 0.00 1.52
375 376 0.440758 CCGCATCGCACGAAACTTAA 59.559 50.000 0.00 0.00 0.00 1.85
376 377 1.355796 CCCGCATCGCACGAAACTTA 61.356 55.000 0.00 0.00 0.00 2.24
377 378 2.677003 CCCGCATCGCACGAAACTT 61.677 57.895 0.00 0.00 0.00 2.66
378 379 3.118454 CCCGCATCGCACGAAACT 61.118 61.111 0.00 0.00 0.00 2.66
379 380 4.811761 GCCCGCATCGCACGAAAC 62.812 66.667 0.00 0.00 0.00 2.78
392 393 2.102749 CATTCATTGTGCGGCCCG 59.897 61.111 0.00 0.00 0.00 6.13
393 394 2.202783 GCATTCATTGTGCGGCCC 60.203 61.111 0.00 0.00 32.29 5.80
394 395 1.517694 CTGCATTCATTGTGCGGCC 60.518 57.895 0.00 0.00 45.37 6.13
395 396 1.517694 CCTGCATTCATTGTGCGGC 60.518 57.895 1.53 0.00 45.41 6.53
396 397 0.527113 TTCCTGCATTCATTGTGCGG 59.473 50.000 0.00 0.11 45.37 5.69
397 398 1.987770 GTTTCCTGCATTCATTGTGCG 59.012 47.619 0.00 0.00 45.37 5.34
398 399 2.288948 TGGTTTCCTGCATTCATTGTGC 60.289 45.455 0.00 0.00 42.81 4.57
399 400 3.663995 TGGTTTCCTGCATTCATTGTG 57.336 42.857 0.00 0.00 0.00 3.33
400 401 4.379652 GTTTGGTTTCCTGCATTCATTGT 58.620 39.130 0.00 0.00 0.00 2.71
401 402 3.429543 CGTTTGGTTTCCTGCATTCATTG 59.570 43.478 0.00 0.00 0.00 2.82
402 403 3.554752 CCGTTTGGTTTCCTGCATTCATT 60.555 43.478 0.00 0.00 0.00 2.57
403 404 2.029110 CCGTTTGGTTTCCTGCATTCAT 60.029 45.455 0.00 0.00 0.00 2.57
404 405 1.339610 CCGTTTGGTTTCCTGCATTCA 59.660 47.619 0.00 0.00 0.00 2.57
405 406 1.611491 TCCGTTTGGTTTCCTGCATTC 59.389 47.619 0.00 0.00 36.30 2.67
406 407 1.339929 GTCCGTTTGGTTTCCTGCATT 59.660 47.619 0.00 0.00 36.30 3.56
407 408 0.958822 GTCCGTTTGGTTTCCTGCAT 59.041 50.000 0.00 0.00 36.30 3.96
408 409 1.104577 GGTCCGTTTGGTTTCCTGCA 61.105 55.000 0.00 0.00 36.30 4.41
409 410 1.104577 TGGTCCGTTTGGTTTCCTGC 61.105 55.000 0.00 0.00 36.30 4.85
410 411 1.394618 TTGGTCCGTTTGGTTTCCTG 58.605 50.000 0.00 0.00 36.30 3.86
411 412 2.146920 TTTGGTCCGTTTGGTTTCCT 57.853 45.000 0.00 0.00 36.30 3.36
412 413 3.069016 AGAATTTGGTCCGTTTGGTTTCC 59.931 43.478 0.00 0.00 36.30 3.13
413 414 4.316205 AGAATTTGGTCCGTTTGGTTTC 57.684 40.909 0.00 0.00 36.30 2.78
414 415 4.442332 GGAAGAATTTGGTCCGTTTGGTTT 60.442 41.667 0.00 0.00 36.30 3.27
415 416 3.069016 GGAAGAATTTGGTCCGTTTGGTT 59.931 43.478 0.00 0.00 36.30 3.67
416 417 2.626266 GGAAGAATTTGGTCCGTTTGGT 59.374 45.455 0.00 0.00 36.30 3.67
417 418 2.029380 GGGAAGAATTTGGTCCGTTTGG 60.029 50.000 0.00 0.00 31.73 3.28
418 419 2.351350 CGGGAAGAATTTGGTCCGTTTG 60.351 50.000 0.00 0.00 33.63 2.93
419 420 1.883926 CGGGAAGAATTTGGTCCGTTT 59.116 47.619 0.00 0.00 33.63 3.60
420 421 1.530323 CGGGAAGAATTTGGTCCGTT 58.470 50.000 0.00 0.00 33.63 4.44
421 422 0.958876 GCGGGAAGAATTTGGTCCGT 60.959 55.000 11.07 0.00 39.64 4.69
422 423 0.676782 AGCGGGAAGAATTTGGTCCG 60.677 55.000 0.00 0.00 40.33 4.79
423 424 1.095600 GAGCGGGAAGAATTTGGTCC 58.904 55.000 0.00 0.00 0.00 4.46
424 425 0.727398 CGAGCGGGAAGAATTTGGTC 59.273 55.000 0.00 0.00 0.00 4.02
425 426 0.676782 CCGAGCGGGAAGAATTTGGT 60.677 55.000 0.00 0.00 38.47 3.67
426 427 2.098293 CCGAGCGGGAAGAATTTGG 58.902 57.895 0.00 0.00 38.47 3.28
456 457 2.274645 TTTGGTTGCCCGCATCTGG 61.275 57.895 0.00 0.00 0.00 3.86
457 458 1.080569 GTTTGGTTGCCCGCATCTG 60.081 57.895 0.00 0.00 0.00 2.90
458 459 1.530419 TGTTTGGTTGCCCGCATCT 60.530 52.632 0.00 0.00 0.00 2.90
459 460 1.372872 GTGTTTGGTTGCCCGCATC 60.373 57.895 0.00 0.00 0.00 3.91
460 461 2.733945 GTGTTTGGTTGCCCGCAT 59.266 55.556 0.00 0.00 0.00 4.73
461 462 3.893763 CGTGTTTGGTTGCCCGCA 61.894 61.111 0.00 0.00 0.00 5.69
463 464 4.639171 GGCGTGTTTGGTTGCCCG 62.639 66.667 0.00 0.00 41.70 6.13
465 466 1.528292 TATGGGCGTGTTTGGTTGCC 61.528 55.000 0.00 0.00 46.82 4.52
466 467 0.315568 TTATGGGCGTGTTTGGTTGC 59.684 50.000 0.00 0.00 0.00 4.17
467 468 2.802787 TTTATGGGCGTGTTTGGTTG 57.197 45.000 0.00 0.00 0.00 3.77
468 469 3.821421 TTTTTATGGGCGTGTTTGGTT 57.179 38.095 0.00 0.00 0.00 3.67
493 494 3.335356 AAGATGCGTCTGGGCTGGG 62.335 63.158 9.75 0.00 34.13 4.45
494 495 2.110967 CAAGATGCGTCTGGGCTGG 61.111 63.158 9.75 0.00 34.13 4.85
495 496 1.376424 ACAAGATGCGTCTGGGCTG 60.376 57.895 14.95 9.28 34.13 4.85
496 497 1.376424 CACAAGATGCGTCTGGGCT 60.376 57.895 14.95 0.00 34.13 5.19
497 498 1.672356 ACACAAGATGCGTCTGGGC 60.672 57.895 14.95 0.00 34.13 5.36
498 499 0.603707 ACACACAAGATGCGTCTGGG 60.604 55.000 14.95 10.33 34.13 4.45
499 500 0.514255 CACACACAAGATGCGTCTGG 59.486 55.000 9.75 9.30 34.13 3.86
500 501 1.220529 ACACACACAAGATGCGTCTG 58.779 50.000 9.75 6.52 34.13 3.51
501 502 1.953559 AACACACACAAGATGCGTCT 58.046 45.000 1.48 1.48 35.82 4.18
502 503 5.718649 ATATAACACACACAAGATGCGTC 57.281 39.130 0.00 0.00 0.00 5.19
503 504 5.753438 CCTATATAACACACACAAGATGCGT 59.247 40.000 0.00 0.00 0.00 5.24
504 505 5.983118 TCCTATATAACACACACAAGATGCG 59.017 40.000 0.00 0.00 0.00 4.73
505 506 7.657354 TCATCCTATATAACACACACAAGATGC 59.343 37.037 0.00 0.00 0.00 3.91
506 507 8.982685 GTCATCCTATATAACACACACAAGATG 58.017 37.037 0.00 0.00 0.00 2.90
507 508 8.150945 GGTCATCCTATATAACACACACAAGAT 58.849 37.037 0.00 0.00 0.00 2.40
508 509 7.344612 AGGTCATCCTATATAACACACACAAGA 59.655 37.037 0.00 0.00 43.12 3.02
509 510 7.500992 AGGTCATCCTATATAACACACACAAG 58.499 38.462 0.00 0.00 43.12 3.16
510 511 7.432148 AGGTCATCCTATATAACACACACAA 57.568 36.000 0.00 0.00 43.12 3.33
511 512 7.014905 GGTAGGTCATCCTATATAACACACACA 59.985 40.741 0.00 0.00 46.48 3.72
512 513 7.376615 GGTAGGTCATCCTATATAACACACAC 58.623 42.308 0.00 0.00 46.48 3.82
513 514 6.495872 GGGTAGGTCATCCTATATAACACACA 59.504 42.308 0.00 0.00 46.48 3.72
514 515 6.495872 TGGGTAGGTCATCCTATATAACACAC 59.504 42.308 0.00 0.00 46.48 3.82
515 516 6.495872 GTGGGTAGGTCATCCTATATAACACA 59.504 42.308 0.00 0.00 46.48 3.72
516 517 6.070938 GGTGGGTAGGTCATCCTATATAACAC 60.071 46.154 0.00 0.00 46.48 3.32
517 518 6.021030 GGTGGGTAGGTCATCCTATATAACA 58.979 44.000 0.00 0.00 46.48 2.41
518 519 6.262207 AGGTGGGTAGGTCATCCTATATAAC 58.738 44.000 0.00 0.00 46.48 1.89
519 520 6.279682 AGAGGTGGGTAGGTCATCCTATATAA 59.720 42.308 0.00 0.00 46.48 0.98
520 521 5.801713 AGAGGTGGGTAGGTCATCCTATATA 59.198 44.000 0.00 0.00 46.48 0.86
521 522 4.612945 AGAGGTGGGTAGGTCATCCTATAT 59.387 45.833 0.00 0.00 46.48 0.86
522 523 3.995077 AGAGGTGGGTAGGTCATCCTATA 59.005 47.826 0.00 0.00 46.48 1.31
523 524 2.798368 AGAGGTGGGTAGGTCATCCTAT 59.202 50.000 0.00 0.00 46.48 2.57
524 525 2.177233 GAGAGGTGGGTAGGTCATCCTA 59.823 54.545 0.00 0.00 44.58 2.94
550 551 1.000993 GAGAGGAGCCTGAGGGTGA 59.999 63.158 8.45 0.00 31.55 4.02
552 553 2.366570 GGAGAGGAGCCTGAGGGT 59.633 66.667 1.18 1.18 35.46 4.34
554 555 3.535962 GCGGAGAGGAGCCTGAGG 61.536 72.222 0.00 0.00 0.00 3.86
594 610 0.707616 AGCAGTGGTAGAGGAGGAGT 59.292 55.000 0.00 0.00 0.00 3.85
656 682 2.667536 CGCTCCTGCTGCACTTGT 60.668 61.111 0.00 0.00 36.97 3.16
710 736 1.448922 CGGACGAGGATCTCCCAGAC 61.449 65.000 0.00 0.00 37.41 3.51
736 762 2.511600 CGGACGATGGACTTGGGC 60.512 66.667 0.00 0.00 0.00 5.36
842 868 1.384989 CCACTGCGACCGTAGAGGAT 61.385 60.000 16.05 0.00 45.00 3.24
871 915 4.026744 CGTAGGGGATGATGTCTATGGAT 58.973 47.826 0.00 0.00 0.00 3.41
948 998 2.830370 GCAGAAAGATGCCGGGGG 60.830 66.667 2.18 0.00 40.43 5.40
949 999 2.045045 TGCAGAAAGATGCCGGGG 60.045 61.111 2.18 0.00 45.91 5.73
950 1000 2.117156 CCTGCAGAAAGATGCCGGG 61.117 63.158 17.39 0.00 44.30 5.73
951 1001 3.506108 CCTGCAGAAAGATGCCGG 58.494 61.111 17.39 0.00 45.91 6.13
952 1002 0.392193 AGACCTGCAGAAAGATGCCG 60.392 55.000 17.39 0.00 45.91 5.69
953 1003 1.093159 CAGACCTGCAGAAAGATGCC 58.907 55.000 17.39 0.00 45.91 4.40
969 1019 3.695606 GGAGGCCGTCACAGCAGA 61.696 66.667 0.00 0.00 0.00 4.26
1038 1089 1.138859 CGAGTGATGGGGTTGCAGATA 59.861 52.381 0.00 0.00 0.00 1.98
1050 1101 3.062763 GGGAGCATATTGACGAGTGATG 58.937 50.000 0.00 0.00 0.00 3.07
1051 1102 2.037772 GGGGAGCATATTGACGAGTGAT 59.962 50.000 0.00 0.00 0.00 3.06
1080 1131 4.012374 CCAAGAAGCTAAAGCCATCAAGA 58.988 43.478 0.00 0.00 43.38 3.02
1147 1198 4.410400 GAACCTCGGGGCCAGGTG 62.410 72.222 15.78 4.23 44.03 4.00
1194 1248 1.626321 TGGTCGGAGCCTAATGTGAAA 59.374 47.619 4.54 0.00 0.00 2.69
1675 1748 2.501723 GAGTAGGACAGAGGAATTGGCA 59.498 50.000 0.00 0.00 0.00 4.92
1704 1777 5.601662 TGTGAAACTAGAGACTGTTTGAGG 58.398 41.667 0.00 0.00 36.64 3.86
1788 1862 9.950680 AAAGGCTAAATATTGACAACATAATCG 57.049 29.630 0.00 0.00 0.00 3.34
1907 2014 3.595190 ACAAGGAAAACTAGTGGGCTT 57.405 42.857 0.00 0.00 0.00 4.35
2087 2206 6.065976 TGAAAACATAGACATGGGTCAGAT 57.934 37.500 0.00 0.00 46.80 2.90
2236 2382 4.283467 CCTCCGTCCCACAATATAAGATCA 59.717 45.833 0.00 0.00 0.00 2.92
2361 2578 7.148590 GGAACACATGCATATTTTCCAAAGTTC 60.149 37.037 16.33 5.26 33.96 3.01
2364 2581 6.400568 AGGAACACATGCATATTTTCCAAAG 58.599 36.000 21.75 0.00 35.87 2.77
2453 2682 7.446769 TCACAGCTTTTGTATAAGTTCAGGTA 58.553 34.615 0.00 0.00 38.16 3.08
2470 2699 4.510167 ATTAATGTAGGGCTCACAGCTT 57.490 40.909 0.00 0.00 41.99 3.74
2566 2798 3.773860 AACGATGCAACACAAAGACAA 57.226 38.095 0.00 0.00 0.00 3.18
2680 2928 5.304686 ACCACTTCACAGTTTTGGATCTA 57.695 39.130 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.