AutoCloner

Multiple sequence alignment - TraesCS3D01G463000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G463000	chr3D	100.000	2603	0	0	1	2603	567214686	567217288	0.000000e+00	4807.0
1	TraesCS3D01G463000	chr3D	92.889	1350	81	7	1255	2601	569547410	569546073	0.000000e+00	1947.0
2	TraesCS3D01G463000	chr3D	90.786	369	20	6	908	1267	569549338	569548975	5.040000e-132	481.0
3	TraesCS3D01G463000	chr3D	96.591	88	3	0	2396	2483	567221935	567222022	2.090000e-31	147.0
4	TraesCS3D01G463000	chr3D	77.366	243	26	12	2268	2489	567226114	567226348	1.640000e-22	117.0
5	TraesCS3D01G463000	chr3B	88.474	1605	124	33	782	2370	756181199	756182758	0.000000e+00	1882.0
6	TraesCS3D01G463000	chr3B	88.351	970	79	21	1596	2552	755042746	755041798	0.000000e+00	1134.0
7	TraesCS3D01G463000	chr3B	87.929	845	67	14	795	1609	755043602	755042763	0.000000e+00	963.0
8	TraesCS3D01G463000	chr3B	86.944	360	29	9	771	1114	756135624	756135981	3.140000e-104	388.0
9	TraesCS3D01G463000	chr3B	83.911	404	49	11	1	399	755049889	755049497	3.160000e-99	372.0
10	TraesCS3D01G463000	chr3B	78.006	632	103	24	159	769	756180524	756181140	5.290000e-97	364.0
11	TraesCS3D01G463000	chr3B	94.318	88	5	0	2396	2483	754983847	754983760	4.520000e-28	135.0
12	TraesCS3D01G463000	chr3B	76.419	229	41	11	5	228	756133831	756134051	7.610000e-21	111.0
13	TraesCS3D01G463000	chrUn	88.041	1639	128	37	782	2400	41100287	41101877	0.000000e+00	1879.0
14	TraesCS3D01G463000	chrUn	87.097	496	34	16	782	1272	389810952	389810482	3.810000e-148	534.0
15	TraesCS3D01G463000	chrUn	86.072	359	33	10	771	1114	324345956	324346312	1.140000e-98	370.0
16	TraesCS3D01G463000	chrUn	77.865	637	101	25	159	772	389811627	389811008	2.460000e-95	359.0
17	TraesCS3D01G463000	chrUn	78.005	391	59	15	159	532	289010502	289010122	1.210000e-53	220.0
18	TraesCS3D01G463000	chrUn	88.406	138	13	2	2464	2601	41101876	41102010	2.070000e-36	163.0
19	TraesCS3D01G463000	chrUn	92.045	88	7	0	2396	2483	41108759	41108846	9.780000e-25	124.0
20	TraesCS3D01G463000	chrUn	77.093	227	42	9	5	228	330201522	330201303	3.520000e-24	122.0
21	TraesCS3D01G463000	chr5B	89.290	887	42	16	1599	2483	619015339	619014504	0.000000e+00	1062.0
22	TraesCS3D01G463000	chr7B	89.064	887	44	16	1599	2483	611463217	611462382	0.000000e+00	1051.0
23	TraesCS3D01G463000	chr2B	89.140	884	42	17	1599	2480	726561915	726562746	0.000000e+00	1051.0
24	TraesCS3D01G463000	chr3A	91.922	718	44	8	1892	2601	700575725	700575014	0.000000e+00	992.0
25	TraesCS3D01G463000	chr3A	90.084	716	53	9	901	1609	700576678	700575974	0.000000e+00	913.0
26	TraesCS3D01G463000	chr3A	88.682	751	70	9	869	1609	701864041	701863296	0.000000e+00	902.0
27	TraesCS3D01G463000	chr3A	86.222	675	45	17	1593	2234	701863283	701862624	0.000000e+00	688.0
28	TraesCS3D01G463000	chr3A	88.127	379	19	11	2226	2601	701862442	701862087	6.660000e-116	427.0
29	TraesCS3D01G463000	chr3A	95.455	88	4	0	2396	2483	700570328	700570241	9.710000e-30	141.0
30	TraesCS3D01G463000	chr3A	94.318	88	5	0	2396	2483	701858753	701858666	4.520000e-28	135.0
31	TraesCS3D01G463000	chr2D	79.814	322	51	14	67	385	560321602	560321292	3.370000e-54	222.0
32	TraesCS3D01G463000	chr2D	77.778	324	58	11	71	388	601609210	601609525	1.230000e-43	187.0
33	TraesCS3D01G463000	chr1B	78.932	337	54	16	67	395	453197895	453197568	2.030000e-51	213.0
34	TraesCS3D01G463000	chr1B	80.620	129	16	8	2	122	532150415	532150288	9.920000e-15	91.6
35	TraesCS3D01G463000	chr1A	79.470	302	46	11	62	357	240676153	240675862	1.580000e-47	200.0
36	TraesCS3D01G463000	chr1D	78.462	325	54	15	67	382	338531818	338531501	5.680000e-47	198.0
37	TraesCS3D01G463000	chr7D	76.818	220	36	14	4	214	589505746	589505959	2.740000e-20	110.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G463000	chr3D	567214686	567217288	2602	False	4807.0	4807	100.00000	1	2603	1	chr3D.!!$F1	2602
1	TraesCS3D01G463000	chr3D	569546073	569549338	3265	True	1214.0	1947	91.83750	908	2601	2	chr3D.!!$R1	1693
2	TraesCS3D01G463000	chr3B	756180524	756182758	2234	False	1123.0	1882	83.24000	159	2370	2	chr3B.!!$F2	2211
3	TraesCS3D01G463000	chr3B	755041798	755043602	1804	True	1048.5	1134	88.14000	795	2552	2	chr3B.!!$R3	1757
4	TraesCS3D01G463000	chr3B	756133831	756135981	2150	False	249.5	388	81.68150	5	1114	2	chr3B.!!$F1	1109
5	TraesCS3D01G463000	chrUn	41100287	41102010	1723	False	1021.0	1879	88.22350	782	2601	2	chrUn.!!$F3	1819
6	TraesCS3D01G463000	chrUn	389810482	389811627	1145	True	446.5	534	82.48100	159	1272	2	chrUn.!!$R3	1113
7	TraesCS3D01G463000	chr5B	619014504	619015339	835	True	1062.0	1062	89.29000	1599	2483	1	chr5B.!!$R1	884
8	TraesCS3D01G463000	chr7B	611462382	611463217	835	True	1051.0	1051	89.06400	1599	2483	1	chr7B.!!$R1	884
9	TraesCS3D01G463000	chr2B	726561915	726562746	831	False	1051.0	1051	89.14000	1599	2480	1	chr2B.!!$F1	881
10	TraesCS3D01G463000	chr3A	700575014	700576678	1664	True	952.5	992	91.00300	901	2601	2	chr3A.!!$R2	1700
11	TraesCS3D01G463000	chr3A	701858666	701864041	5375	True	538.0	902	89.33725	869	2601	4	chr3A.!!$R3	1732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
756	1826	1.904287	ACACGAAATGGGCTTTAGCA	58.096	45.0	3.88	0.0	44.36	3.49	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2499	5499	0.389391	ATAATCTCCAGTCGCCCACG	59.611	55.0	0.0	0.0	42.01	4.94	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
105	435	5.598416	ATTGGTATTGCCCTTAAAGAAGC	57.402	39.130	0.00	0.00	36.04	3.86
127	457	9.691362	GAAGCAAGGAAATGAAACAAATACTAA	57.309	29.630	0.00	0.00	0.00	2.24
188	520	9.920946	AATGAATTAGTGACATTGGTATTACCT	57.079	29.630	13.90	0.00	39.58	3.08
264	596	8.909708	TGCACATAACTTATACAGAAAATTGC	57.090	30.769	0.00	0.00	0.00	3.56
266	598	8.798153	GCACATAACTTATACAGAAAATTGCAC	58.202	33.333	0.00	0.00	0.00	4.57
304	636	8.907222	TGCAAGAATAAGCATATCATAGTGAA	57.093	30.769	0.00	0.00	35.51	3.18
382	718	9.538508	ACCATGAAAGAAGAAAGAAAATGAAAG	57.461	29.630	0.00	0.00	0.00	2.62
448	802	9.586435	GGAACATTGGTTTAAGATAGAAAATGG	57.414	33.333	0.00	0.00	37.36	3.16
489	847	4.727507	ACCATAACACACAACTTTGCAA	57.272	36.364	0.00	0.00	0.00	4.08
495	853	7.639461	CCATAACACACAACTTTGCAATTTTTC	59.361	33.333	0.00	0.00	0.00	2.29
583	1649	8.774890	TTACATGTATTCATTTTGCATTTGCT	57.225	26.923	6.36	0.00	35.50	3.91
602	1669	5.560966	TGCTCAACTTCCGAAAAATATCC	57.439	39.130	0.00	0.00	0.00	2.59
604	1671	5.652014	TGCTCAACTTCCGAAAAATATCCAT	59.348	36.000	0.00	0.00	0.00	3.41
612	1679	6.380095	TCCGAAAAATATCCATAAAACCGG	57.620	37.500	0.00	0.00	0.00	5.28
615	1682	6.016943	CCGAAAAATATCCATAAAACCGGCTA	60.017	38.462	0.00	0.00	0.00	3.93
699	1768	9.934190	AAACAAATTCAGAAAATGCATACAAAC	57.066	25.926	0.00	0.00	0.00	2.93
726	1796	9.914834	ATAAAATATTAAGGCACTGTTGGTCTA	57.085	29.630	0.00	0.00	40.86	2.59
756	1826	1.904287	ACACGAAATGGGCTTTAGCA	58.096	45.000	3.88	0.00	44.36	3.49
775	1891	4.957971	AGCACAATAAGAAATCGACAACG	58.042	39.130	0.00	0.00	41.26	4.10
780	1896	5.642063	ACAATAAGAAATCGACAACGGTCAT	59.358	36.000	0.00	0.00	44.54	3.06
788	1904	3.311106	TCGACAACGGTCATAACAGAAC	58.689	45.455	0.00	0.00	44.54	3.01
806	1926	5.769662	ACAGAACAAAATATCAAGGAGCACA	59.230	36.000	0.00	0.00	0.00	4.57
812	1932	7.318141	ACAAAATATCAAGGAGCACAAATCTG	58.682	34.615	0.00	0.00	0.00	2.90
816	1936	4.038271	TCAAGGAGCACAAATCTGGAAT	57.962	40.909	0.00	0.00	0.00	3.01
886	2012	7.924541	AGGGAAGTTACATGTACCTAAATTGA	58.075	34.615	4.68	0.00	0.00	2.57
1093	2246	1.076923	GCCGTACTCCTCCTCCTCA	60.077	63.158	0.00	0.00	0.00	3.86
1097	2250	1.107945	GTACTCCTCCTCCTCACTGC	58.892	60.000	0.00	0.00	0.00	4.40
1166	2319	1.066215	CACCACCATCTCAACGATCCA	60.066	52.381	0.00	0.00	0.00	3.41
1196	2352	2.359404	GTCTCTCTCCCCCGGACA	59.641	66.667	0.73	0.00	0.00	4.02
1289	4018	4.379243	CGGCCACGCTGAGGTCTT	62.379	66.667	2.24	0.00	37.02	3.01
1389	4118	2.182791	CTCACGGTGCTCGCTGAT	59.817	61.111	2.51	0.00	43.89	2.90
1420	4149	2.337246	TACGCGCCTCAGCTGTACA	61.337	57.895	14.67	0.00	36.60	2.90
1422	4151	2.262915	GCGCCTCAGCTGTACAGT	59.737	61.111	23.44	8.30	36.60	3.55
1675	4441	1.594331	AAGGTTGGTGAACGCTCTTC	58.406	50.000	0.00	0.00	32.28	2.87
1679	4445	1.880027	GTTGGTGAACGCTCTTCCAAT	59.120	47.619	15.09	0.00	37.99	3.16
1824	4601	5.548406	TGCTAAGAGAACTAAGGAACCAAC	58.452	41.667	0.00	0.00	0.00	3.77
2092	4895	1.275291	CCTTCAACTGAGCTCCCGTTA	59.725	52.381	12.15	0.31	0.00	3.18
2193	4997	1.830279	TGGCAGATGAGGAAGCAAAG	58.170	50.000	0.00	0.00	0.00	2.77
2247	5241	6.995091	GCAGATGAAAATGTAGAGGGTCTAAT	59.005	38.462	0.00	0.00	29.58	1.73
2373	5367	5.173664	TGTCTATCAGAAACATGCAGACTG	58.826	41.667	0.00	0.00	35.09	3.51
2374	5368	4.033817	GTCTATCAGAAACATGCAGACTGC	59.966	45.833	20.86	20.86	45.29	4.40
2375	5369	2.556144	TCAGAAACATGCAGACTGCT	57.444	45.000	26.94	10.88	45.31	4.24
2473	5473	6.965500	CAGATGCAAACTATCATCACAAGTTC	59.035	38.462	0.00	0.00	41.02	3.01
2491	5491	5.200368	AGTTCATGTTGCAAAAGGGTTAG	57.800	39.130	0.00	0.00	0.00	2.34
2499	5499	4.053469	TGCAAAAGGGTTAGCAAAGAAC	57.947	40.909	0.00	0.00	33.48	3.01
2511	5511	1.597027	AAAGAACGTGGGCGACTGG	60.597	57.895	0.00	0.00	42.00	4.00
2548	5551	1.879380	CTTTGTCTCGGCATTCACCAA	59.121	47.619	0.00	0.00	0.00	3.67
2552	5555	3.884895	TGTCTCGGCATTCACCAAATAT	58.115	40.909	0.00	0.00	0.00	1.28
2553	5556	5.029807	TGTCTCGGCATTCACCAAATATA	57.970	39.130	0.00	0.00	0.00	0.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	8.641541	ACATCTGTTTTGTGGAATTCTATTGTT	58.358	29.630	5.23	0.00	0.00	2.83
36	37	9.520515	AGTAACATCTGTTTTGTGGAATTCTAT	57.479	29.630	5.23	0.00	39.31	1.98
38	39	7.823745	AGTAACATCTGTTTTGTGGAATTCT	57.176	32.000	5.23	0.00	39.31	2.40
44	45	7.925993	TCTTTGTAGTAACATCTGTTTTGTGG	58.074	34.615	0.20	0.00	39.31	4.17
45	46	9.950680	ATTCTTTGTAGTAACATCTGTTTTGTG	57.049	29.630	0.20	0.00	39.31	3.33
46	47	9.950680	CATTCTTTGTAGTAACATCTGTTTTGT	57.049	29.630	0.20	0.00	39.31	2.83
73	403	9.875708	TTAAGGGCAATACCAATATCACTAATT	57.124	29.630	0.00	0.00	42.05	1.40
78	408	7.817418	TCTTTAAGGGCAATACCAATATCAC	57.183	36.000	0.00	0.00	42.05	3.06
81	411	6.838612	TGCTTCTTTAAGGGCAATACCAATAT	59.161	34.615	9.97	0.00	42.05	1.28
82	412	6.191315	TGCTTCTTTAAGGGCAATACCAATA	58.809	36.000	9.97	0.00	42.05	1.90
93	423	5.982890	TCATTTCCTTGCTTCTTTAAGGG	57.017	39.130	0.00	0.00	42.92	3.95
150	482	7.669304	TGTCACTAATTCATTCTTCCATGGAAA	59.331	33.333	26.87	14.63	33.34	3.13
157	489	7.396540	ACCAATGTCACTAATTCATTCTTCC	57.603	36.000	0.00	0.00	30.74	3.46
464	822	5.934625	TGCAAAGTTGTGTGTTATGGTTTTT	59.065	32.000	0.00	0.00	0.00	1.94
465	823	5.482908	TGCAAAGTTGTGTGTTATGGTTTT	58.517	33.333	0.00	0.00	0.00	2.43
466	824	5.078411	TGCAAAGTTGTGTGTTATGGTTT	57.922	34.783	0.00	0.00	0.00	3.27
467	825	4.727507	TGCAAAGTTGTGTGTTATGGTT	57.272	36.364	0.00	0.00	0.00	3.67
468	826	4.727507	TTGCAAAGTTGTGTGTTATGGT	57.272	36.364	0.00	0.00	0.00	3.55
469	827	6.601741	AAATTGCAAAGTTGTGTGTTATGG	57.398	33.333	1.71	0.00	30.25	2.74
470	828	8.173775	TGAAAAATTGCAAAGTTGTGTGTTATG	58.826	29.630	1.71	0.00	32.69	1.90
471	829	8.261492	TGAAAAATTGCAAAGTTGTGTGTTAT	57.739	26.923	1.71	0.00	32.69	1.89
472	830	7.658179	TGAAAAATTGCAAAGTTGTGTGTTA	57.342	28.000	1.71	0.00	32.69	2.41
473	831	6.551385	TGAAAAATTGCAAAGTTGTGTGTT	57.449	29.167	1.71	0.00	32.69	3.32
474	832	6.551385	TTGAAAAATTGCAAAGTTGTGTGT	57.449	29.167	1.71	0.00	32.69	3.72
475	833	9.160576	CATATTGAAAAATTGCAAAGTTGTGTG	57.839	29.630	1.71	0.00	32.69	3.82
476	834	8.891720	ACATATTGAAAAATTGCAAAGTTGTGT	58.108	25.926	1.71	0.00	32.69	3.72
577	1643	7.035612	GGATATTTTTCGGAAGTTGAGCAAAT	58.964	34.615	0.00	0.00	0.00	2.32
581	1647	5.560966	TGGATATTTTTCGGAAGTTGAGC	57.439	39.130	0.00	0.00	0.00	4.26
583	1649	9.849166	GTTTTATGGATATTTTTCGGAAGTTGA	57.151	29.630	0.00	0.00	0.00	3.18
699	1768	8.686334	AGACCAACAGTGCCTTAATATTTTATG	58.314	33.333	0.00	0.00	0.00	1.90
708	1777	6.535540	TGTTTATAGACCAACAGTGCCTTAA	58.464	36.000	0.00	0.00	0.00	1.85
710	1780	4.980573	TGTTTATAGACCAACAGTGCCTT	58.019	39.130	0.00	0.00	0.00	4.35
712	1782	3.689649	CCTGTTTATAGACCAACAGTGCC	59.310	47.826	12.02	0.00	45.77	5.01
720	1790	5.981088	TCGTGTTACCTGTTTATAGACCA	57.019	39.130	0.00	0.00	0.00	4.02
726	1796	4.157105	GCCCATTTCGTGTTACCTGTTTAT	59.843	41.667	0.00	0.00	0.00	1.40
733	1803	3.427098	GCTAAAGCCCATTTCGTGTTACC	60.427	47.826	0.00	0.00	34.31	2.85
734	1804	3.189702	TGCTAAAGCCCATTTCGTGTTAC	59.810	43.478	0.00	0.00	41.18	2.50
735	1805	3.189702	GTGCTAAAGCCCATTTCGTGTTA	59.810	43.478	0.00	0.00	41.18	2.41
739	1809	1.904287	TGTGCTAAAGCCCATTTCGT	58.096	45.000	0.00	0.00	41.18	3.85
756	1826	4.992319	TGACCGTTGTCGATTTCTTATTGT	59.008	37.500	0.00	0.00	44.86	2.71
764	1834	4.562082	TCTGTTATGACCGTTGTCGATTT	58.438	39.130	0.00	0.00	44.86	2.17
775	1891	8.956426	TCCTTGATATTTTGTTCTGTTATGACC	58.044	33.333	0.00	0.00	0.00	4.02
780	1896	7.446931	TGTGCTCCTTGATATTTTGTTCTGTTA	59.553	33.333	0.00	0.00	0.00	2.41
788	1904	6.755141	CCAGATTTGTGCTCCTTGATATTTTG	59.245	38.462	0.00	0.00	0.00	2.44
812	1932	0.665298	GGCCGCTGATTTCTGATTCC	59.335	55.000	0.00	0.00	0.00	3.01
816	1936	0.321210	TTTCGGCCGCTGATTTCTGA	60.321	50.000	23.51	0.00	0.00	3.27
826	1946	1.812507	AGTCGGTTATTTCGGCCGC	60.813	57.895	23.51	4.66	44.58	6.53
897	2023	3.560896	TGCTTGACCCGTTTTTGTACTAC	59.439	43.478	0.00	0.00	0.00	2.73
898	2024	3.806380	TGCTTGACCCGTTTTTGTACTA	58.194	40.909	0.00	0.00	0.00	1.82
899	2025	2.616842	CTGCTTGACCCGTTTTTGTACT	59.383	45.455	0.00	0.00	0.00	2.73
1009	2150	4.250305	GTGGTGGTCACAGGCGGT	62.250	66.667	3.40	0.00	45.39	5.68
1143	2296	1.338107	TCGTTGAGATGGTGGTGTCT	58.662	50.000	0.00	0.00	0.00	3.41
1196	2352	2.143594	GAGCGTCACGTTGAGGGAGT	62.144	60.000	0.00	0.00	33.25	3.85
1366	4095	2.581354	GAGCACCGTGAGCCTGAT	59.419	61.111	1.65	0.00	0.00	2.90
1400	4129	2.337246	TACAGCTGAGGCGCGTACA	61.337	57.895	23.35	4.88	44.37	2.90
1623	4385	8.744008	ATAACGATTCTAGTAAATGATCACCG	57.256	34.615	0.00	0.00	0.00	4.94
1675	4441	7.550196	ACAATAAAAGCTTGGCAAGAATATTGG	59.450	33.333	30.87	22.35	0.00	3.16
1679	4445	8.900983	AAAACAATAAAAGCTTGGCAAGAATA	57.099	26.923	30.45	15.84	0.00	1.75
1824	4601	7.587629	TCTGTCTAATTTTGAGCAACATGAAG	58.412	34.615	0.00	0.00	0.00	3.02
2004	4807	2.494073	TGGGTCTTTGTTTGGTCACAAC	59.506	45.455	0.00	0.00	36.36	3.32
2092	4895	6.564328	GGAAATTTGAGTTTCGAAGCCATAT	58.436	36.000	8.51	4.87	38.64	1.78
2193	4997	3.548818	GCACATCACCAAAACAGTCTCAC	60.549	47.826	0.00	0.00	0.00	3.51
2333	5327	4.889832	AGACAAGAAACAGCACTGAAAG	57.110	40.909	4.31	0.00	42.29	2.62
2373	5367	3.320541	ACTGCAGGTCTGATACTGATAGC	59.679	47.826	19.93	2.35	36.86	2.97
2374	5368	4.582240	TCACTGCAGGTCTGATACTGATAG	59.418	45.833	19.93	12.67	36.86	2.08
2375	5369	4.536765	TCACTGCAGGTCTGATACTGATA	58.463	43.478	19.93	4.07	36.86	2.15
2473	5473	3.383620	TGCTAACCCTTTTGCAACATG	57.616	42.857	0.00	0.00	39.99	3.21
2491	5491	2.251371	GTCGCCCACGTTCTTTGC	59.749	61.111	0.00	0.00	41.18	3.68
2499	5499	0.389391	ATAATCTCCAGTCGCCCACG	59.611	55.000	0.00	0.00	42.01	4.94
2511	5511	5.077134	ACAAAGCCCTTGCAAATAATCTC	57.923	39.130	0.00	0.00	41.13	2.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.