Multiple sequence alignment - TraesCS3D01G461300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G461300 chr3D 100.000 3674 0 0 1 3674 565829748 565833421 0.000000e+00 6785.0
1 TraesCS3D01G461300 chr3D 75.838 1581 293 52 973 2510 565641891 565643425 0.000000e+00 721.0
2 TraesCS3D01G461300 chr3D 79.975 809 97 41 6 773 39624432 39623648 1.500000e-148 536.0
3 TraesCS3D01G461300 chr3D 93.156 263 18 0 3153 3415 118438575 118438837 1.600000e-103 387.0
4 TraesCS3D01G461300 chr3D 76.812 621 128 7 1513 2121 565675926 565676542 5.880000e-88 335.0
5 TraesCS3D01G461300 chr3D 87.054 224 27 2 975 1197 564905450 564905228 6.090000e-63 252.0
6 TraesCS3D01G461300 chr3D 76.781 379 79 5 1704 2080 565814251 565814622 1.730000e-48 204.0
7 TraesCS3D01G461300 chr3D 76.797 306 63 5 1703 2007 565802057 565802355 8.160000e-37 165.0
8 TraesCS3D01G461300 chr3B 92.125 1473 92 13 802 2272 754330158 754331608 0.000000e+00 2056.0
9 TraesCS3D01G461300 chr3B 77.252 1943 289 79 936 2808 754308038 754309897 0.000000e+00 998.0
10 TraesCS3D01G461300 chr3B 87.091 519 27 10 2328 2816 754361921 754362429 5.360000e-153 551.0
11 TraesCS3D01G461300 chr3B 77.337 984 187 22 1519 2484 753916758 753917723 1.930000e-152 549.0
12 TraesCS3D01G461300 chr3B 75.603 1078 208 35 1384 2437 753867728 753868774 1.980000e-132 483.0
13 TraesCS3D01G461300 chr3B 93.208 265 18 0 3151 3415 164490137 164489873 1.240000e-104 390.0
14 TraesCS3D01G461300 chr3B 76.323 756 148 16 1528 2271 753994953 753995689 3.460000e-100 375.0
15 TraesCS3D01G461300 chr3B 76.162 667 133 16 1666 2324 763604832 763605480 9.840000e-86 327.0
16 TraesCS3D01G461300 chr3B 90.455 220 19 2 987 1205 752973262 752973044 4.640000e-74 289.0
17 TraesCS3D01G461300 chr3B 88.785 214 21 3 2818 3029 754362480 754362692 3.640000e-65 259.0
18 TraesCS3D01G461300 chr3B 82.796 279 45 2 991 1266 773747040 773747318 2.830000e-61 246.0
19 TraesCS3D01G461300 chr3B 84.836 244 32 4 961 1202 753867271 753867511 1.320000e-59 241.0
20 TraesCS3D01G461300 chr3B 95.161 124 5 1 3028 3151 754368123 754368245 1.040000e-45 195.0
21 TraesCS3D01G461300 chr3B 90.278 72 7 0 2274 2345 754331773 754331844 1.090000e-15 95.3
22 TraesCS3D01G461300 chr7D 85.281 693 63 16 1 663 554408954 554408271 0.000000e+00 678.0
23 TraesCS3D01G461300 chr7D 90.196 153 13 2 3465 3617 566876734 566876584 8.050000e-47 198.0
24 TraesCS3D01G461300 chr7D 92.857 56 3 1 3398 3452 566876764 566876709 3.040000e-11 80.5
25 TraesCS3D01G461300 chr6B 81.404 812 94 38 1 773 533523291 533522498 8.720000e-171 610.0
26 TraesCS3D01G461300 chr6B 79.604 809 111 34 1 773 622740563 622741353 6.990000e-147 531.0
27 TraesCS3D01G461300 chr3A 78.138 988 176 24 1519 2484 699982975 699983944 3.160000e-165 592.0
28 TraesCS3D01G461300 chr3A 80.098 814 101 40 1 773 700916167 700915374 1.930000e-152 549.0
29 TraesCS3D01G461300 chr3A 75.577 1257 204 51 1231 2446 700249347 700250541 3.250000e-145 525.0
30 TraesCS3D01G461300 chr3A 76.355 1070 196 37 1394 2437 699976318 699977356 4.200000e-144 521.0
31 TraesCS3D01G461300 chr3A 87.500 320 36 4 2835 3151 30244111 30244429 2.080000e-97 366.0
32 TraesCS3D01G461300 chr3A 89.333 225 18 5 985 1205 699533367 699533589 1.000000e-70 278.0
33 TraesCS3D01G461300 chr3A 76.993 439 92 7 1688 2124 699190219 699189788 3.670000e-60 243.0
34 TraesCS3D01G461300 chr3A 82.593 270 47 0 991 1260 714595621 714595890 4.740000e-59 239.0
35 TraesCS3D01G461300 chr3A 84.772 197 30 0 1005 1201 700739286 700739482 8.050000e-47 198.0
36 TraesCS3D01G461300 chr2A 85.366 574 63 15 20 583 599447443 599446881 3.180000e-160 575.0
37 TraesCS3D01G461300 chr2A 91.503 153 11 2 3465 3617 589540658 589540508 3.720000e-50 209.0
38 TraesCS3D01G461300 chr2A 94.545 55 3 0 3395 3449 589540691 589540637 6.540000e-13 86.1
39 TraesCS3D01G461300 chr5A 80.268 821 103 39 1 781 52720898 52720097 6.890000e-157 564.0
40 TraesCS3D01G461300 chrUn 80.297 807 101 36 1 773 18087472 18086690 1.150000e-154 556.0
41 TraesCS3D01G461300 chrUn 79.082 588 92 23 1809 2390 39287694 39288256 3.460000e-100 375.0
42 TraesCS3D01G461300 chr4A 79.848 789 101 45 3 758 713591559 713590796 1.170000e-144 523.0
43 TraesCS3D01G461300 chr4A 81.667 300 47 6 976 1269 611418687 611418390 3.670000e-60 243.0
44 TraesCS3D01G461300 chr2B 92.708 288 18 3 3151 3436 43209784 43210070 2.640000e-111 412.0
45 TraesCS3D01G461300 chr6D 95.582 249 11 0 3151 3399 6984403 6984155 2.060000e-107 399.0
46 TraesCS3D01G461300 chr6D 92.989 271 15 4 3147 3415 6991897 6991629 3.440000e-105 392.0
47 TraesCS3D01G461300 chr6D 73.575 579 116 20 1693 2251 25767550 25768111 1.740000e-43 187.0
48 TraesCS3D01G461300 chr1D 93.040 273 18 1 3151 3422 18582301 18582573 7.390000e-107 398.0
49 TraesCS3D01G461300 chr1D 95.565 248 11 0 3151 3398 468306851 468307098 7.390000e-107 398.0
50 TraesCS3D01G461300 chr4B 93.893 262 15 1 3151 3411 556069207 556068946 9.560000e-106 394.0
51 TraesCS3D01G461300 chr7B 93.511 262 16 1 3151 3411 640080058 640080319 4.450000e-104 388.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G461300 chr3D 565829748 565833421 3673 False 6785.00 6785 100.0000 1 3674 1 chr3D.!!$F6 3673
1 TraesCS3D01G461300 chr3D 565641891 565643425 1534 False 721.00 721 75.8380 973 2510 1 chr3D.!!$F2 1537
2 TraesCS3D01G461300 chr3D 39623648 39624432 784 True 536.00 536 79.9750 6 773 1 chr3D.!!$R1 767
3 TraesCS3D01G461300 chr3D 565675926 565676542 616 False 335.00 335 76.8120 1513 2121 1 chr3D.!!$F3 608
4 TraesCS3D01G461300 chr3B 754330158 754331844 1686 False 1075.65 2056 91.2015 802 2345 2 chr3B.!!$F8 1543
5 TraesCS3D01G461300 chr3B 754308038 754309897 1859 False 998.00 998 77.2520 936 2808 1 chr3B.!!$F3 1872
6 TraesCS3D01G461300 chr3B 753916758 753917723 965 False 549.00 549 77.3370 1519 2484 1 chr3B.!!$F1 965
7 TraesCS3D01G461300 chr3B 754361921 754362692 771 False 405.00 551 87.9380 2328 3029 2 chr3B.!!$F9 701
8 TraesCS3D01G461300 chr3B 753994953 753995689 736 False 375.00 375 76.3230 1528 2271 1 chr3B.!!$F2 743
9 TraesCS3D01G461300 chr3B 753867271 753868774 1503 False 362.00 483 80.2195 961 2437 2 chr3B.!!$F7 1476
10 TraesCS3D01G461300 chr3B 763604832 763605480 648 False 327.00 327 76.1620 1666 2324 1 chr3B.!!$F5 658
11 TraesCS3D01G461300 chr7D 554408271 554408954 683 True 678.00 678 85.2810 1 663 1 chr7D.!!$R1 662
12 TraesCS3D01G461300 chr6B 533522498 533523291 793 True 610.00 610 81.4040 1 773 1 chr6B.!!$R1 772
13 TraesCS3D01G461300 chr6B 622740563 622741353 790 False 531.00 531 79.6040 1 773 1 chr6B.!!$F1 772
14 TraesCS3D01G461300 chr3A 699982975 699983944 969 False 592.00 592 78.1380 1519 2484 1 chr3A.!!$F4 965
15 TraesCS3D01G461300 chr3A 700915374 700916167 793 True 549.00 549 80.0980 1 773 1 chr3A.!!$R2 772
16 TraesCS3D01G461300 chr3A 700249347 700250541 1194 False 525.00 525 75.5770 1231 2446 1 chr3A.!!$F5 1215
17 TraesCS3D01G461300 chr3A 699976318 699977356 1038 False 521.00 521 76.3550 1394 2437 1 chr3A.!!$F3 1043
18 TraesCS3D01G461300 chr2A 599446881 599447443 562 True 575.00 575 85.3660 20 583 1 chr2A.!!$R1 563
19 TraesCS3D01G461300 chr5A 52720097 52720898 801 True 564.00 564 80.2680 1 781 1 chr5A.!!$R1 780
20 TraesCS3D01G461300 chrUn 18086690 18087472 782 True 556.00 556 80.2970 1 773 1 chrUn.!!$R1 772
21 TraesCS3D01G461300 chrUn 39287694 39288256 562 False 375.00 375 79.0820 1809 2390 1 chrUn.!!$F1 581
22 TraesCS3D01G461300 chr4A 713590796 713591559 763 True 523.00 523 79.8480 3 758 1 chr4A.!!$R2 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 836 0.041684 TCAGACAGGAGCTCCCATGA 59.958 55.000 29.54 22.74 37.41 3.07 F
781 839 0.108207 GACAGGAGCTCCCATGATGG 59.892 60.000 29.54 3.98 37.41 3.51 F
792 850 0.259647 CCATGATGGCCTTCCCTCAA 59.740 55.000 15.62 0.00 39.82 3.02 F
878 936 1.135460 CCGTCCGTTTCAGAGGTCTAC 60.135 57.143 0.00 0.00 0.00 2.59 F
2448 2781 0.679505 TCCTTGAACTGGACAGTCCG 59.320 55.000 15.24 11.84 41.58 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1843 1988 0.036010 CGGCACTTGAAGGTCCAGAT 60.036 55.000 0.0 0.0 0.00 2.90 R
2157 2305 0.314302 ACGCACGAGCTCACTTAACT 59.686 50.000 15.4 0.0 39.10 2.24 R
2205 2353 0.824109 TTCACCCATACTCCAGCTCG 59.176 55.000 0.0 0.0 0.00 5.03 R
2637 2974 1.987770 GCAATCTGCCACATTTTGTCG 59.012 47.619 0.0 0.0 37.42 4.35 R
3423 3841 0.030908 CCTCCGACTCGTCCTATTGC 59.969 60.000 0.0 0.0 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
312 338 6.925165 GGCATATATCCCAAAAATGTTCAGTG 59.075 38.462 0.00 0.00 0.00 3.66
445 473 5.573669 TCACTGTTTTAAAAAGTTTGTCCGC 59.426 36.000 1.31 0.00 0.00 5.54
566 595 8.443937 TCGAAAAATTTCAAAATTTGTTCGGTT 58.556 25.926 28.60 16.85 45.16 4.44
584 613 3.616821 CGGTTCTTTATGATCTCGTGCAA 59.383 43.478 0.00 0.00 0.00 4.08
666 719 2.545532 GCTGTGCAGTGTATTTTTGGCA 60.546 45.455 0.00 0.00 0.00 4.92
668 721 4.118410 CTGTGCAGTGTATTTTTGGCAAA 58.882 39.130 8.93 8.93 32.50 3.68
672 726 6.135400 GTGCAGTGTATTTTTGGCAAATTTC 58.865 36.000 14.29 5.86 32.50 2.17
674 728 6.541641 TGCAGTGTATTTTTGGCAAATTTCTT 59.458 30.769 14.29 0.23 0.00 2.52
687 741 1.634702 ATTTCTTCACGCTCGAGCTC 58.365 50.000 32.88 2.73 39.32 4.09
692 746 1.315981 TTCACGCTCGAGCTCCTGAT 61.316 55.000 32.88 10.18 39.32 2.90
695 749 1.282570 CGCTCGAGCTCCTGATCTC 59.717 63.158 32.88 2.59 39.32 2.75
702 756 4.211125 TCGAGCTCCTGATCTCTAAATGT 58.789 43.478 8.47 0.00 0.00 2.71
715 769 0.840617 TAAATGTGCCGGCCCATCTA 59.159 50.000 25.07 13.18 0.00 1.98
726 780 2.289072 CGGCCCATCTACATCTACCTTG 60.289 54.545 0.00 0.00 0.00 3.61
736 794 4.273148 ACATCTACCTTGAGCGAAACTT 57.727 40.909 0.00 0.00 0.00 2.66
773 831 0.102120 CGTCATCAGACAGGAGCTCC 59.898 60.000 26.22 26.22 45.23 4.70
776 834 1.129917 CATCAGACAGGAGCTCCCAT 58.870 55.000 29.54 17.83 37.41 4.00
777 835 1.129917 ATCAGACAGGAGCTCCCATG 58.870 55.000 29.54 23.24 37.41 3.66
778 836 0.041684 TCAGACAGGAGCTCCCATGA 59.958 55.000 29.54 22.74 37.41 3.07
779 837 1.129917 CAGACAGGAGCTCCCATGAT 58.870 55.000 29.54 12.88 37.41 2.45
780 838 1.129917 AGACAGGAGCTCCCATGATG 58.870 55.000 29.54 21.77 37.41 3.07
781 839 0.108207 GACAGGAGCTCCCATGATGG 59.892 60.000 29.54 3.98 37.41 3.51
782 840 1.228184 CAGGAGCTCCCATGATGGC 60.228 63.158 29.54 0.46 35.79 4.40
783 841 2.114838 GGAGCTCCCATGATGGCC 59.885 66.667 23.19 0.00 35.79 5.36
784 842 2.459086 GGAGCTCCCATGATGGCCT 61.459 63.158 23.19 1.45 35.79 5.19
785 843 1.535685 GAGCTCCCATGATGGCCTT 59.464 57.895 5.79 0.00 35.79 4.35
786 844 0.536915 GAGCTCCCATGATGGCCTTC 60.537 60.000 5.79 11.69 35.79 3.46
787 845 1.530183 GCTCCCATGATGGCCTTCC 60.530 63.158 15.62 0.00 35.79 3.46
788 846 1.152368 CTCCCATGATGGCCTTCCC 59.848 63.158 15.62 0.00 35.79 3.97
789 847 1.309013 TCCCATGATGGCCTTCCCT 60.309 57.895 15.62 0.89 35.79 4.20
790 848 1.152368 CCCATGATGGCCTTCCCTC 59.848 63.158 15.62 0.14 35.79 4.30
791 849 1.648302 CCCATGATGGCCTTCCCTCA 61.648 60.000 15.62 5.71 40.51 3.86
792 850 0.259647 CCATGATGGCCTTCCCTCAA 59.740 55.000 15.62 0.00 39.82 3.02
793 851 1.342275 CCATGATGGCCTTCCCTCAAA 60.342 52.381 15.62 0.00 39.82 2.69
794 852 2.459644 CATGATGGCCTTCCCTCAAAA 58.540 47.619 15.62 0.00 39.82 2.44
795 853 2.692709 TGATGGCCTTCCCTCAAAAA 57.307 45.000 15.62 0.00 34.64 1.94
844 902 4.473520 GGCTAAGCCCAGCTCGCA 62.474 66.667 7.06 0.00 44.06 5.10
874 932 3.057337 CCCGTCCGTTTCAGAGGT 58.943 61.111 0.00 0.00 0.00 3.85
877 935 1.171308 CCGTCCGTTTCAGAGGTCTA 58.829 55.000 0.00 0.00 0.00 2.59
878 936 1.135460 CCGTCCGTTTCAGAGGTCTAC 60.135 57.143 0.00 0.00 0.00 2.59
879 937 1.538512 CGTCCGTTTCAGAGGTCTACA 59.461 52.381 0.00 0.00 0.00 2.74
880 938 2.163815 CGTCCGTTTCAGAGGTCTACAT 59.836 50.000 0.00 0.00 0.00 2.29
881 939 3.512680 GTCCGTTTCAGAGGTCTACATG 58.487 50.000 0.00 0.00 0.00 3.21
882 940 2.094182 TCCGTTTCAGAGGTCTACATGC 60.094 50.000 0.00 0.00 0.00 4.06
891 949 5.046663 TCAGAGGTCTACATGCACATTGTAA 60.047 40.000 0.00 0.00 0.00 2.41
909 967 3.188873 TGTAAACGGTTTAAGCCCATTCG 59.811 43.478 14.45 0.00 0.00 3.34
912 970 2.014128 ACGGTTTAAGCCCATTCGATG 58.986 47.619 2.36 0.00 0.00 3.84
913 971 2.014128 CGGTTTAAGCCCATTCGATGT 58.986 47.619 2.36 0.00 0.00 3.06
914 972 2.031683 CGGTTTAAGCCCATTCGATGTC 59.968 50.000 2.36 0.00 0.00 3.06
916 974 3.013921 GTTTAAGCCCATTCGATGTCCA 58.986 45.455 0.00 0.00 0.00 4.02
917 975 3.576078 TTAAGCCCATTCGATGTCCAT 57.424 42.857 0.00 0.00 0.00 3.41
921 979 3.099141 AGCCCATTCGATGTCCATTTTT 58.901 40.909 0.00 0.00 0.00 1.94
922 980 3.131046 AGCCCATTCGATGTCCATTTTTC 59.869 43.478 0.00 0.00 0.00 2.29
923 981 3.737972 GCCCATTCGATGTCCATTTTTCC 60.738 47.826 0.00 0.00 0.00 3.13
924 982 3.446873 CCCATTCGATGTCCATTTTTCCA 59.553 43.478 0.00 0.00 0.00 3.53
925 983 4.423732 CCATTCGATGTCCATTTTTCCAC 58.576 43.478 0.00 0.00 0.00 4.02
926 984 3.822594 TTCGATGTCCATTTTTCCACG 57.177 42.857 0.00 0.00 0.00 4.94
927 985 3.046968 TCGATGTCCATTTTTCCACGA 57.953 42.857 0.00 0.00 0.00 4.35
928 986 2.739913 TCGATGTCCATTTTTCCACGAC 59.260 45.455 0.00 0.00 0.00 4.34
1229 1296 2.808543 CCAAACTCCTCGACAAGAAAGG 59.191 50.000 0.00 0.00 0.00 3.11
1245 1333 7.536625 ACAAGAAAGGCTACTCCCTAGATATA 58.463 38.462 0.00 0.00 33.97 0.86
1303 1400 1.366494 CAATCCGTCGCGCGATTTC 60.366 57.895 37.03 22.08 44.77 2.17
1348 1451 4.742201 GCTGCGACGGCCTCTTCA 62.742 66.667 0.00 0.00 38.85 3.02
1440 1570 3.758554 TGCTTTCAGGCTACAGGATTTTC 59.241 43.478 0.00 0.00 0.00 2.29
1486 1616 2.943690 GGCGAGTACAGACTACTCATGA 59.056 50.000 6.27 0.00 42.94 3.07
1493 1623 3.779444 ACAGACTACTCATGAACCCTCA 58.221 45.455 0.00 0.00 35.56 3.86
1742 1884 1.172812 GCTCCGGTTGTTTCTGGCTT 61.173 55.000 0.00 0.00 34.12 4.35
1821 1966 7.118971 GCAGCAACAAAAATTGATATTTGGGTA 59.881 33.333 5.56 0.00 40.09 3.69
1834 1979 7.168219 TGATATTTGGGTATTGCAGGACTATC 58.832 38.462 0.00 0.00 0.00 2.08
1843 1988 1.824852 TGCAGGACTATCAAAGCGAGA 59.175 47.619 0.00 0.00 0.00 4.04
1882 2027 2.477189 CGGATTGAATTGCCGGTTACAC 60.477 50.000 1.90 0.00 41.29 2.90
1891 2036 1.621317 TGCCGGTTACACAGATCAAGA 59.379 47.619 1.90 0.00 0.00 3.02
1926 2071 8.131100 GGAAATCATGACGATGACATATTTTGT 58.869 33.333 0.00 0.00 41.52 2.83
2137 2283 7.553881 TTTGTGAAGGAGACTAGTTTTTCTG 57.446 36.000 0.00 0.00 42.68 3.02
2146 2292 2.076863 CTAGTTTTTCTGCTCCCGGTG 58.923 52.381 0.00 0.00 0.00 4.94
2157 2305 1.610624 GCTCCCGGTGATTTGAAGACA 60.611 52.381 0.00 0.00 0.00 3.41
2161 2309 3.325425 TCCCGGTGATTTGAAGACAGTTA 59.675 43.478 0.00 0.00 0.00 2.24
2205 2353 8.738645 AATGTCCTAGATGTTTTTATCCTCAC 57.261 34.615 0.00 0.00 0.00 3.51
2371 2693 2.031245 TGTGTGTGTCGATGCCAAAATC 60.031 45.455 0.00 0.00 0.00 2.17
2390 2715 4.589216 ATCACAAGTCATTTTGGTGTGG 57.411 40.909 0.00 0.00 39.98 4.17
2422 2755 1.583054 GGCTAACTAATCTGCCCGTG 58.417 55.000 0.00 0.00 39.49 4.94
2448 2781 0.679505 TCCTTGAACTGGACAGTCCG 59.320 55.000 15.24 11.84 41.58 4.79
2492 2825 4.166531 ACTCTAGGGGTCTTCACTAGTAGG 59.833 50.000 1.45 0.00 36.47 3.18
2512 2847 8.363761 AGTAGGTACTAGTTAGCAATCTGTTT 57.636 34.615 0.00 0.00 42.86 2.83
2516 2851 8.154856 AGGTACTAGTTAGCAATCTGTTTTTCA 58.845 33.333 0.00 0.00 36.02 2.69
2521 2856 9.897744 CTAGTTAGCAATCTGTTTTTCATTGAA 57.102 29.630 0.00 0.00 0.00 2.69
2523 2858 9.034544 AGTTAGCAATCTGTTTTTCATTGAAAC 57.965 29.630 11.30 3.06 37.48 2.78
2524 2859 6.515043 AGCAATCTGTTTTTCATTGAAACG 57.485 33.333 11.30 1.88 39.30 3.60
2525 2860 6.272318 AGCAATCTGTTTTTCATTGAAACGA 58.728 32.000 11.30 6.68 39.30 3.85
2526 2861 6.756074 AGCAATCTGTTTTTCATTGAAACGAA 59.244 30.769 11.30 2.11 39.30 3.85
2527 2862 7.439056 AGCAATCTGTTTTTCATTGAAACGAAT 59.561 29.630 11.30 0.00 39.30 3.34
2637 2974 4.273148 TCTTGGTTCTCTTCCAGCTAAC 57.727 45.455 0.00 0.00 36.28 2.34
2640 2977 2.029290 TGGTTCTCTTCCAGCTAACGAC 60.029 50.000 0.00 0.00 0.00 4.34
2704 3068 1.202976 AGCTTGGAGCACATTCACCTT 60.203 47.619 2.47 0.00 45.56 3.50
2747 3112 9.129209 GAGCACTACTCATTTAATTGAAAAACC 57.871 33.333 2.00 0.00 45.49 3.27
2816 3183 8.344546 AGTATGGATACTAGGCTCACCATTATA 58.655 37.037 13.10 0.00 41.55 0.98
2891 3308 1.167851 CTGGTGCAACATTGGTCGAT 58.832 50.000 4.06 0.00 39.98 3.59
2896 3313 1.271871 TGCAACATTGGTCGATCCCTT 60.272 47.619 0.00 0.00 34.77 3.95
2901 3318 2.283298 CATTGGTCGATCCCTTGACAG 58.717 52.381 0.00 0.00 37.50 3.51
2908 3325 5.104527 TGGTCGATCCCTTGACAGATTAAAT 60.105 40.000 0.00 0.00 37.50 1.40
2920 3337 2.961062 CAGATTAAATGGGAAGGGCCTG 59.039 50.000 6.92 0.00 36.66 4.85
2924 3341 2.116869 AAATGGGAAGGGCCTGTTTT 57.883 45.000 6.92 0.00 36.66 2.43
2926 3343 1.644509 ATGGGAAGGGCCTGTTTTTC 58.355 50.000 6.92 0.00 36.66 2.29
2928 3345 0.178932 GGGAAGGGCCTGTTTTTCCT 60.179 55.000 18.37 0.00 39.21 3.36
2942 3359 7.099120 CCTGTTTTTCCTTCCATATTTTCCTG 58.901 38.462 0.00 0.00 0.00 3.86
2961 3378 9.528018 TTTTCCTGTTGAAGTATTTTGACATTC 57.472 29.630 0.00 0.00 33.63 2.67
2962 3379 6.898041 TCCTGTTGAAGTATTTTGACATTCG 58.102 36.000 0.00 0.00 0.00 3.34
2989 3407 4.752661 TTTTCGCGGCAAAGTAGTTAAT 57.247 36.364 6.13 0.00 0.00 1.40
3032 3450 9.959749 TTTTTGCTTATTGGTAGTTCAGTAAAG 57.040 29.630 0.00 0.00 0.00 1.85
3033 3451 8.911918 TTTGCTTATTGGTAGTTCAGTAAAGA 57.088 30.769 0.00 0.00 0.00 2.52
3034 3452 7.900782 TGCTTATTGGTAGTTCAGTAAAGAC 57.099 36.000 0.00 0.00 0.00 3.01
3035 3453 7.446769 TGCTTATTGGTAGTTCAGTAAAGACA 58.553 34.615 0.00 0.00 0.00 3.41
3036 3454 7.386848 TGCTTATTGGTAGTTCAGTAAAGACAC 59.613 37.037 0.00 0.00 0.00 3.67
3037 3455 7.603024 GCTTATTGGTAGTTCAGTAAAGACACT 59.397 37.037 0.00 0.00 0.00 3.55
3038 3456 9.141400 CTTATTGGTAGTTCAGTAAAGACACTC 57.859 37.037 0.00 0.00 0.00 3.51
3039 3457 5.464030 TGGTAGTTCAGTAAAGACACTCC 57.536 43.478 0.00 0.00 0.00 3.85
3040 3458 4.282703 TGGTAGTTCAGTAAAGACACTCCC 59.717 45.833 0.00 0.00 0.00 4.30
3041 3459 4.282703 GGTAGTTCAGTAAAGACACTCCCA 59.717 45.833 0.00 0.00 0.00 4.37
3042 3460 5.221581 GGTAGTTCAGTAAAGACACTCCCAA 60.222 44.000 0.00 0.00 0.00 4.12
3043 3461 4.962155 AGTTCAGTAAAGACACTCCCAAG 58.038 43.478 0.00 0.00 0.00 3.61
3044 3462 3.402628 TCAGTAAAGACACTCCCAAGC 57.597 47.619 0.00 0.00 0.00 4.01
3045 3463 2.972713 TCAGTAAAGACACTCCCAAGCT 59.027 45.455 0.00 0.00 0.00 3.74
3046 3464 3.391296 TCAGTAAAGACACTCCCAAGCTT 59.609 43.478 0.00 0.00 0.00 3.74
3047 3465 3.499918 CAGTAAAGACACTCCCAAGCTTG 59.500 47.826 19.93 19.93 0.00 4.01
3057 3475 4.606071 CAAGCTTGGAGTCGGGAG 57.394 61.111 19.14 0.00 0.00 4.30
3058 3476 1.743252 CAAGCTTGGAGTCGGGAGC 60.743 63.158 19.14 3.58 35.42 4.70
3059 3477 1.915769 AAGCTTGGAGTCGGGAGCT 60.916 57.895 0.00 7.48 46.71 4.09
3060 3478 2.125350 GCTTGGAGTCGGGAGCTG 60.125 66.667 0.00 0.00 32.54 4.24
3061 3479 2.650116 GCTTGGAGTCGGGAGCTGA 61.650 63.158 0.00 0.00 32.54 4.26
3062 3480 1.965754 GCTTGGAGTCGGGAGCTGAT 61.966 60.000 0.00 0.00 32.54 2.90
3063 3481 0.103937 CTTGGAGTCGGGAGCTGATC 59.896 60.000 0.00 0.00 0.00 2.92
3064 3482 1.667154 TTGGAGTCGGGAGCTGATCG 61.667 60.000 0.00 0.00 0.00 3.69
3065 3483 2.122167 GGAGTCGGGAGCTGATCGT 61.122 63.158 0.00 0.00 0.00 3.73
3066 3484 0.818445 GGAGTCGGGAGCTGATCGTA 60.818 60.000 0.00 0.00 0.00 3.43
3067 3485 0.589223 GAGTCGGGAGCTGATCGTAG 59.411 60.000 0.00 0.00 0.00 3.51
3068 3486 0.180642 AGTCGGGAGCTGATCGTAGA 59.819 55.000 0.00 0.00 45.75 2.59
3069 3487 1.202830 AGTCGGGAGCTGATCGTAGAT 60.203 52.381 0.00 0.00 45.12 1.98
3070 3488 1.068885 GTCGGGAGCTGATCGTAGATG 60.069 57.143 0.00 0.00 45.12 2.90
3071 3489 0.955178 CGGGAGCTGATCGTAGATGT 59.045 55.000 0.00 0.00 45.12 3.06
3072 3490 1.335415 CGGGAGCTGATCGTAGATGTG 60.335 57.143 0.00 0.00 45.12 3.21
3073 3491 1.957177 GGGAGCTGATCGTAGATGTGA 59.043 52.381 0.00 0.00 45.12 3.58
3074 3492 2.362397 GGGAGCTGATCGTAGATGTGAA 59.638 50.000 0.00 0.00 45.12 3.18
3075 3493 3.181475 GGGAGCTGATCGTAGATGTGAAA 60.181 47.826 0.00 0.00 45.12 2.69
3076 3494 4.502259 GGGAGCTGATCGTAGATGTGAAAT 60.502 45.833 0.00 0.00 45.12 2.17
3077 3495 5.053145 GGAGCTGATCGTAGATGTGAAATT 58.947 41.667 0.00 0.00 45.12 1.82
3078 3496 5.176590 GGAGCTGATCGTAGATGTGAAATTC 59.823 44.000 0.00 0.00 45.12 2.17
3079 3497 5.911752 AGCTGATCGTAGATGTGAAATTCT 58.088 37.500 0.00 0.00 45.12 2.40
3080 3498 6.344500 AGCTGATCGTAGATGTGAAATTCTT 58.656 36.000 0.00 0.00 45.12 2.52
3081 3499 6.478344 AGCTGATCGTAGATGTGAAATTCTTC 59.522 38.462 0.00 0.00 45.12 2.87
3082 3500 6.256539 GCTGATCGTAGATGTGAAATTCTTCA 59.743 38.462 0.00 0.00 45.12 3.02
3094 3512 5.554070 TGAAATTCTTCACTCAGCATCTCA 58.446 37.500 0.00 0.00 36.62 3.27
3095 3513 5.642491 TGAAATTCTTCACTCAGCATCTCAG 59.358 40.000 0.00 0.00 36.62 3.35
3096 3514 2.669300 TCTTCACTCAGCATCTCAGC 57.331 50.000 0.00 0.00 0.00 4.26
3097 3515 1.135170 TCTTCACTCAGCATCTCAGCG 60.135 52.381 0.00 0.00 40.15 5.18
3098 3516 0.890683 TTCACTCAGCATCTCAGCGA 59.109 50.000 0.00 0.00 40.15 4.93
3099 3517 0.455005 TCACTCAGCATCTCAGCGAG 59.545 55.000 0.00 0.00 39.40 5.03
3100 3518 0.173029 CACTCAGCATCTCAGCGAGT 59.827 55.000 0.00 0.00 43.66 4.18
3101 3519 0.894141 ACTCAGCATCTCAGCGAGTT 59.106 50.000 0.00 0.00 41.79 3.01
3102 3520 2.095461 ACTCAGCATCTCAGCGAGTTA 58.905 47.619 0.00 0.00 41.79 2.24
3103 3521 2.159310 ACTCAGCATCTCAGCGAGTTAC 60.159 50.000 0.00 0.00 41.79 2.50
3104 3522 2.095461 TCAGCATCTCAGCGAGTTACT 58.905 47.619 5.66 0.00 40.15 2.24
3105 3523 2.159324 TCAGCATCTCAGCGAGTTACTG 60.159 50.000 0.00 7.59 40.15 2.74
3106 3524 1.821753 AGCATCTCAGCGAGTTACTGT 59.178 47.619 0.00 0.00 40.15 3.55
3107 3525 2.159310 AGCATCTCAGCGAGTTACTGTC 60.159 50.000 0.00 0.00 40.15 3.51
3108 3526 2.159310 GCATCTCAGCGAGTTACTGTCT 60.159 50.000 0.00 0.00 36.50 3.41
3109 3527 3.690422 CATCTCAGCGAGTTACTGTCTC 58.310 50.000 0.00 0.00 36.50 3.36
3110 3528 2.779506 TCTCAGCGAGTTACTGTCTCA 58.220 47.619 0.00 0.00 36.50 3.27
3111 3529 2.744741 TCTCAGCGAGTTACTGTCTCAG 59.255 50.000 0.00 0.00 36.50 3.35
3113 3531 3.671716 TCAGCGAGTTACTGTCTCAGTA 58.328 45.455 5.64 5.64 43.46 2.74
3114 3532 4.262617 TCAGCGAGTTACTGTCTCAGTAT 58.737 43.478 9.86 0.00 44.85 2.12
3115 3533 4.700692 TCAGCGAGTTACTGTCTCAGTATT 59.299 41.667 9.86 3.23 44.85 1.89
3116 3534 5.031578 CAGCGAGTTACTGTCTCAGTATTC 58.968 45.833 9.86 9.76 44.85 1.75
3117 3535 4.700692 AGCGAGTTACTGTCTCAGTATTCA 59.299 41.667 9.86 0.00 44.85 2.57
3118 3536 5.031578 GCGAGTTACTGTCTCAGTATTCAG 58.968 45.833 9.86 8.66 44.85 3.02
3119 3537 5.574082 CGAGTTACTGTCTCAGTATTCAGG 58.426 45.833 9.86 0.00 44.85 3.86
3120 3538 5.124138 CGAGTTACTGTCTCAGTATTCAGGT 59.876 44.000 9.86 0.00 44.85 4.00
3121 3539 6.349445 CGAGTTACTGTCTCAGTATTCAGGTT 60.349 42.308 9.86 0.00 44.85 3.50
3122 3540 7.304497 AGTTACTGTCTCAGTATTCAGGTTT 57.696 36.000 9.86 0.00 44.85 3.27
3123 3541 7.736893 AGTTACTGTCTCAGTATTCAGGTTTT 58.263 34.615 9.86 0.00 44.85 2.43
3124 3542 7.657761 AGTTACTGTCTCAGTATTCAGGTTTTG 59.342 37.037 9.86 0.00 44.85 2.44
3125 3543 6.174720 ACTGTCTCAGTATTCAGGTTTTGA 57.825 37.500 0.27 0.00 43.46 2.69
3126 3544 6.226787 ACTGTCTCAGTATTCAGGTTTTGAG 58.773 40.000 0.27 0.00 43.46 3.02
3127 3545 6.174720 TGTCTCAGTATTCAGGTTTTGAGT 57.825 37.500 0.00 0.00 37.07 3.41
3128 3546 5.991606 TGTCTCAGTATTCAGGTTTTGAGTG 59.008 40.000 0.00 0.00 37.07 3.51
3129 3547 6.183360 TGTCTCAGTATTCAGGTTTTGAGTGA 60.183 38.462 0.00 0.00 37.07 3.41
3130 3548 6.876257 GTCTCAGTATTCAGGTTTTGAGTGAT 59.124 38.462 0.00 0.00 37.07 3.06
3131 3549 7.389053 GTCTCAGTATTCAGGTTTTGAGTGATT 59.611 37.037 0.00 0.00 37.07 2.57
3132 3550 7.939039 TCTCAGTATTCAGGTTTTGAGTGATTT 59.061 33.333 0.00 0.00 37.07 2.17
3133 3551 8.099364 TCAGTATTCAGGTTTTGAGTGATTTC 57.901 34.615 0.00 0.00 37.07 2.17
3134 3552 7.174946 TCAGTATTCAGGTTTTGAGTGATTTCC 59.825 37.037 0.00 0.00 37.07 3.13
3135 3553 7.004086 AGTATTCAGGTTTTGAGTGATTTCCA 58.996 34.615 0.00 0.00 37.07 3.53
3136 3554 6.923199 ATTCAGGTTTTGAGTGATTTCCAT 57.077 33.333 0.00 0.00 37.07 3.41
3137 3555 5.710513 TCAGGTTTTGAGTGATTTCCATG 57.289 39.130 0.00 0.00 0.00 3.66
3138 3556 5.384336 TCAGGTTTTGAGTGATTTCCATGA 58.616 37.500 0.00 0.00 0.00 3.07
3139 3557 5.832595 TCAGGTTTTGAGTGATTTCCATGAA 59.167 36.000 0.00 0.00 0.00 2.57
3140 3558 6.494491 TCAGGTTTTGAGTGATTTCCATGAAT 59.506 34.615 0.00 0.00 0.00 2.57
3141 3559 6.588756 CAGGTTTTGAGTGATTTCCATGAATG 59.411 38.462 0.00 0.00 0.00 2.67
3159 3577 8.915057 CATGAATGGAAGTATCTGTTAGGAAT 57.085 34.615 0.00 0.00 0.00 3.01
3160 3578 9.347240 CATGAATGGAAGTATCTGTTAGGAATT 57.653 33.333 0.00 0.00 0.00 2.17
3204 3622 9.903682 GCACATGCTAATTAATGAATAGTCATT 57.096 29.630 20.92 20.92 45.54 2.57
3215 3633 5.450818 TGAATAGTCATTAGCAAAGGGGT 57.549 39.130 0.00 0.00 0.00 4.95
3216 3634 5.192927 TGAATAGTCATTAGCAAAGGGGTG 58.807 41.667 0.00 0.00 0.00 4.61
3217 3635 4.862641 ATAGTCATTAGCAAAGGGGTGT 57.137 40.909 0.00 0.00 0.00 4.16
3218 3636 2.795329 AGTCATTAGCAAAGGGGTGTG 58.205 47.619 0.00 0.00 0.00 3.82
3219 3637 2.108250 AGTCATTAGCAAAGGGGTGTGT 59.892 45.455 0.00 0.00 0.00 3.72
3220 3638 2.488153 GTCATTAGCAAAGGGGTGTGTC 59.512 50.000 0.00 0.00 0.00 3.67
3221 3639 1.818674 CATTAGCAAAGGGGTGTGTCC 59.181 52.381 0.00 0.00 0.00 4.02
3222 3640 0.847373 TTAGCAAAGGGGTGTGTCCA 59.153 50.000 0.00 0.00 38.11 4.02
3223 3641 0.847373 TAGCAAAGGGGTGTGTCCAA 59.153 50.000 0.00 0.00 38.11 3.53
3224 3642 0.755327 AGCAAAGGGGTGTGTCCAAC 60.755 55.000 0.00 0.00 38.11 3.77
3225 3643 0.755327 GCAAAGGGGTGTGTCCAACT 60.755 55.000 0.00 0.00 38.11 3.16
3226 3644 1.318576 CAAAGGGGTGTGTCCAACTC 58.681 55.000 0.00 0.00 38.11 3.01
3227 3645 0.185175 AAAGGGGTGTGTCCAACTCC 59.815 55.000 0.00 0.00 41.02 3.85
3228 3646 2.032071 GGGGTGTGTCCAACTCCG 59.968 66.667 0.00 0.00 42.40 4.63
3229 3647 2.513259 GGGGTGTGTCCAACTCCGA 61.513 63.158 0.00 0.00 42.40 4.55
3230 3648 1.448497 GGGTGTGTCCAACTCCGAA 59.552 57.895 0.00 0.00 42.40 4.30
3231 3649 0.883370 GGGTGTGTCCAACTCCGAAC 60.883 60.000 0.00 0.00 42.40 3.95
3232 3650 0.179067 GGTGTGTCCAACTCCGAACA 60.179 55.000 0.00 0.00 32.96 3.18
3233 3651 1.217882 GTGTGTCCAACTCCGAACAG 58.782 55.000 0.00 0.00 0.00 3.16
3234 3652 0.828022 TGTGTCCAACTCCGAACAGT 59.172 50.000 0.00 0.00 0.00 3.55
3235 3653 1.202486 TGTGTCCAACTCCGAACAGTC 60.202 52.381 0.00 0.00 0.00 3.51
3236 3654 1.116308 TGTCCAACTCCGAACAGTCA 58.884 50.000 0.00 0.00 0.00 3.41
3237 3655 1.691976 TGTCCAACTCCGAACAGTCAT 59.308 47.619 0.00 0.00 0.00 3.06
3238 3656 2.069273 GTCCAACTCCGAACAGTCATG 58.931 52.381 0.00 0.00 0.00 3.07
3239 3657 1.691976 TCCAACTCCGAACAGTCATGT 59.308 47.619 0.00 0.00 43.15 3.21
3240 3658 2.069273 CCAACTCCGAACAGTCATGTC 58.931 52.381 0.00 0.00 39.29 3.06
3241 3659 2.069273 CAACTCCGAACAGTCATGTCC 58.931 52.381 0.00 0.00 39.29 4.02
3242 3660 0.608640 ACTCCGAACAGTCATGTCCC 59.391 55.000 0.00 0.00 39.29 4.46
3243 3661 0.898320 CTCCGAACAGTCATGTCCCT 59.102 55.000 0.00 0.00 39.29 4.20
3244 3662 1.276421 CTCCGAACAGTCATGTCCCTT 59.724 52.381 0.00 0.00 39.29 3.95
3245 3663 1.275291 TCCGAACAGTCATGTCCCTTC 59.725 52.381 0.00 0.00 39.29 3.46
3246 3664 1.276421 CCGAACAGTCATGTCCCTTCT 59.724 52.381 0.00 0.00 39.29 2.85
3247 3665 2.496070 CCGAACAGTCATGTCCCTTCTA 59.504 50.000 0.00 0.00 39.29 2.10
3248 3666 3.133003 CCGAACAGTCATGTCCCTTCTAT 59.867 47.826 0.00 0.00 39.29 1.98
3249 3667 4.363999 CGAACAGTCATGTCCCTTCTATC 58.636 47.826 0.00 0.00 39.29 2.08
3250 3668 4.098654 CGAACAGTCATGTCCCTTCTATCT 59.901 45.833 0.00 0.00 39.29 1.98
3251 3669 5.394663 CGAACAGTCATGTCCCTTCTATCTT 60.395 44.000 0.00 0.00 39.29 2.40
3252 3670 6.380079 AACAGTCATGTCCCTTCTATCTTT 57.620 37.500 0.00 0.00 39.29 2.52
3253 3671 5.983540 ACAGTCATGTCCCTTCTATCTTTC 58.016 41.667 0.00 0.00 32.99 2.62
3254 3672 5.723887 ACAGTCATGTCCCTTCTATCTTTCT 59.276 40.000 0.00 0.00 32.99 2.52
3255 3673 6.897966 ACAGTCATGTCCCTTCTATCTTTCTA 59.102 38.462 0.00 0.00 32.99 2.10
3256 3674 7.566879 ACAGTCATGTCCCTTCTATCTTTCTAT 59.433 37.037 0.00 0.00 32.99 1.98
3257 3675 8.428063 CAGTCATGTCCCTTCTATCTTTCTATT 58.572 37.037 0.00 0.00 0.00 1.73
3258 3676 8.428063 AGTCATGTCCCTTCTATCTTTCTATTG 58.572 37.037 0.00 0.00 0.00 1.90
3259 3677 7.172361 GTCATGTCCCTTCTATCTTTCTATTGC 59.828 40.741 0.00 0.00 0.00 3.56
3260 3678 5.930135 TGTCCCTTCTATCTTTCTATTGCC 58.070 41.667 0.00 0.00 0.00 4.52
3261 3679 5.428457 TGTCCCTTCTATCTTTCTATTGCCA 59.572 40.000 0.00 0.00 0.00 4.92
3262 3680 6.069673 TGTCCCTTCTATCTTTCTATTGCCAA 60.070 38.462 0.00 0.00 0.00 4.52
3263 3681 7.001073 GTCCCTTCTATCTTTCTATTGCCAAT 58.999 38.462 0.00 0.00 0.00 3.16
3264 3682 8.157476 GTCCCTTCTATCTTTCTATTGCCAATA 58.843 37.037 0.00 0.00 0.00 1.90
3265 3683 8.378565 TCCCTTCTATCTTTCTATTGCCAATAG 58.621 37.037 16.73 16.73 41.77 1.73
3266 3684 7.609532 CCCTTCTATCTTTCTATTGCCAATAGG 59.390 40.741 21.23 8.34 40.97 2.57
3278 3696 1.755179 CCAATAGGCACCTGTTCTGG 58.245 55.000 0.00 0.00 0.00 3.86
3279 3697 1.281867 CCAATAGGCACCTGTTCTGGA 59.718 52.381 0.00 0.00 0.00 3.86
3280 3698 2.636830 CAATAGGCACCTGTTCTGGAG 58.363 52.381 0.00 0.00 0.00 3.86
3281 3699 1.207791 ATAGGCACCTGTTCTGGAGG 58.792 55.000 0.00 0.00 36.57 4.30
3282 3700 0.116342 TAGGCACCTGTTCTGGAGGA 59.884 55.000 0.00 0.00 34.37 3.71
3283 3701 0.768221 AGGCACCTGTTCTGGAGGAA 60.768 55.000 0.00 0.00 34.37 3.36
3284 3702 0.329596 GGCACCTGTTCTGGAGGAAT 59.670 55.000 0.00 0.00 36.24 3.01
3285 3703 1.457346 GCACCTGTTCTGGAGGAATG 58.543 55.000 0.00 0.00 36.24 2.67
3286 3704 1.457346 CACCTGTTCTGGAGGAATGC 58.543 55.000 0.00 0.00 36.24 3.56
3287 3705 0.329596 ACCTGTTCTGGAGGAATGCC 59.670 55.000 0.00 0.00 36.24 4.40
3298 3716 3.788672 GGAATGCCTCCGAACAGAT 57.211 52.632 0.00 0.00 33.37 2.90
3299 3717 2.910688 GGAATGCCTCCGAACAGATA 57.089 50.000 0.00 0.00 33.37 1.98
3300 3718 2.484889 GGAATGCCTCCGAACAGATAC 58.515 52.381 0.00 0.00 33.37 2.24
3301 3719 2.484889 GAATGCCTCCGAACAGATACC 58.515 52.381 0.00 0.00 0.00 2.73
3302 3720 1.794714 ATGCCTCCGAACAGATACCT 58.205 50.000 0.00 0.00 0.00 3.08
3303 3721 1.112113 TGCCTCCGAACAGATACCTC 58.888 55.000 0.00 0.00 0.00 3.85
3304 3722 1.342076 TGCCTCCGAACAGATACCTCT 60.342 52.381 0.00 0.00 0.00 3.69
3305 3723 1.757699 GCCTCCGAACAGATACCTCTT 59.242 52.381 0.00 0.00 0.00 2.85
3306 3724 2.223852 GCCTCCGAACAGATACCTCTTC 60.224 54.545 0.00 0.00 0.00 2.87
3307 3725 3.292460 CCTCCGAACAGATACCTCTTCT 58.708 50.000 0.00 0.00 0.00 2.85
3308 3726 3.702045 CCTCCGAACAGATACCTCTTCTT 59.298 47.826 0.00 0.00 0.00 2.52
3309 3727 4.202070 CCTCCGAACAGATACCTCTTCTTC 60.202 50.000 0.00 0.00 0.00 2.87
3310 3728 3.700038 TCCGAACAGATACCTCTTCTTCC 59.300 47.826 0.00 0.00 0.00 3.46
3311 3729 3.181474 CCGAACAGATACCTCTTCTTCCC 60.181 52.174 0.00 0.00 0.00 3.97
3312 3730 3.447586 CGAACAGATACCTCTTCTTCCCA 59.552 47.826 0.00 0.00 0.00 4.37
3313 3731 4.678309 CGAACAGATACCTCTTCTTCCCAC 60.678 50.000 0.00 0.00 0.00 4.61
3314 3732 3.108376 ACAGATACCTCTTCTTCCCACC 58.892 50.000 0.00 0.00 0.00 4.61
3315 3733 3.246167 ACAGATACCTCTTCTTCCCACCT 60.246 47.826 0.00 0.00 0.00 4.00
3316 3734 4.016479 ACAGATACCTCTTCTTCCCACCTA 60.016 45.833 0.00 0.00 0.00 3.08
3317 3735 5.151454 CAGATACCTCTTCTTCCCACCTAT 58.849 45.833 0.00 0.00 0.00 2.57
3318 3736 5.604650 CAGATACCTCTTCTTCCCACCTATT 59.395 44.000 0.00 0.00 0.00 1.73
3319 3737 5.841783 AGATACCTCTTCTTCCCACCTATTC 59.158 44.000 0.00 0.00 0.00 1.75
3320 3738 3.116174 ACCTCTTCTTCCCACCTATTCC 58.884 50.000 0.00 0.00 0.00 3.01
3321 3739 3.115390 CCTCTTCTTCCCACCTATTCCA 58.885 50.000 0.00 0.00 0.00 3.53
3322 3740 3.135530 CCTCTTCTTCCCACCTATTCCAG 59.864 52.174 0.00 0.00 0.00 3.86
3323 3741 4.033709 CTCTTCTTCCCACCTATTCCAGA 58.966 47.826 0.00 0.00 0.00 3.86
3324 3742 4.635473 TCTTCTTCCCACCTATTCCAGAT 58.365 43.478 0.00 0.00 0.00 2.90
3325 3743 4.410228 TCTTCTTCCCACCTATTCCAGATG 59.590 45.833 0.00 0.00 0.00 2.90
3326 3744 3.736094 TCTTCCCACCTATTCCAGATGT 58.264 45.455 0.00 0.00 0.00 3.06
3327 3745 4.890988 TCTTCCCACCTATTCCAGATGTA 58.109 43.478 0.00 0.00 0.00 2.29
3328 3746 5.476983 TCTTCCCACCTATTCCAGATGTAT 58.523 41.667 0.00 0.00 0.00 2.29
3329 3747 6.630131 TCTTCCCACCTATTCCAGATGTATA 58.370 40.000 0.00 0.00 0.00 1.47
3330 3748 7.256399 TCTTCCCACCTATTCCAGATGTATAT 58.744 38.462 0.00 0.00 0.00 0.86
3331 3749 8.406643 TCTTCCCACCTATTCCAGATGTATATA 58.593 37.037 0.00 0.00 0.00 0.86
3332 3750 9.218525 CTTCCCACCTATTCCAGATGTATATAT 57.781 37.037 0.00 0.00 0.00 0.86
3358 3776 5.964958 TGAGAATCAATGAAAACCAGGAC 57.035 39.130 0.00 0.00 45.97 3.85
3359 3777 5.634118 TGAGAATCAATGAAAACCAGGACT 58.366 37.500 0.00 0.00 45.97 3.85
3360 3778 5.474532 TGAGAATCAATGAAAACCAGGACTG 59.525 40.000 0.00 0.00 45.97 3.51
3361 3779 5.634118 AGAATCAATGAAAACCAGGACTGA 58.366 37.500 0.00 0.00 0.00 3.41
3362 3780 6.251471 AGAATCAATGAAAACCAGGACTGAT 58.749 36.000 0.00 0.00 0.00 2.90
3363 3781 5.909621 ATCAATGAAAACCAGGACTGATG 57.090 39.130 0.00 0.00 0.00 3.07
3364 3782 4.081406 TCAATGAAAACCAGGACTGATGG 58.919 43.478 0.00 0.00 43.87 3.51
3374 3792 3.842869 GACTGATGGTCCTTTCGCT 57.157 52.632 0.00 0.00 38.93 4.93
3375 3793 2.100605 GACTGATGGTCCTTTCGCTT 57.899 50.000 0.00 0.00 38.93 4.68
3376 3794 2.427506 GACTGATGGTCCTTTCGCTTT 58.572 47.619 0.00 0.00 38.93 3.51
3377 3795 2.416893 GACTGATGGTCCTTTCGCTTTC 59.583 50.000 0.00 0.00 38.93 2.62
3378 3796 2.224523 ACTGATGGTCCTTTCGCTTTCA 60.225 45.455 0.00 0.00 0.00 2.69
3379 3797 2.813754 CTGATGGTCCTTTCGCTTTCAA 59.186 45.455 0.00 0.00 0.00 2.69
3380 3798 3.420893 TGATGGTCCTTTCGCTTTCAAT 58.579 40.909 0.00 0.00 0.00 2.57
3381 3799 3.440173 TGATGGTCCTTTCGCTTTCAATC 59.560 43.478 0.00 0.00 0.00 2.67
3382 3800 3.140325 TGGTCCTTTCGCTTTCAATCT 57.860 42.857 0.00 0.00 0.00 2.40
3383 3801 3.074412 TGGTCCTTTCGCTTTCAATCTC 58.926 45.455 0.00 0.00 0.00 2.75
3384 3802 2.094417 GGTCCTTTCGCTTTCAATCTCG 59.906 50.000 0.00 0.00 0.00 4.04
3385 3803 2.737252 GTCCTTTCGCTTTCAATCTCGT 59.263 45.455 0.00 0.00 0.00 4.18
3386 3804 3.186613 GTCCTTTCGCTTTCAATCTCGTT 59.813 43.478 0.00 0.00 0.00 3.85
3387 3805 3.813166 TCCTTTCGCTTTCAATCTCGTTT 59.187 39.130 0.00 0.00 0.00 3.60
3388 3806 4.274950 TCCTTTCGCTTTCAATCTCGTTTT 59.725 37.500 0.00 0.00 0.00 2.43
3389 3807 5.467399 TCCTTTCGCTTTCAATCTCGTTTTA 59.533 36.000 0.00 0.00 0.00 1.52
3390 3808 5.564127 CCTTTCGCTTTCAATCTCGTTTTAC 59.436 40.000 0.00 0.00 0.00 2.01
3391 3809 5.917541 TTCGCTTTCAATCTCGTTTTACT 57.082 34.783 0.00 0.00 0.00 2.24
3392 3810 5.511088 TCGCTTTCAATCTCGTTTTACTC 57.489 39.130 0.00 0.00 0.00 2.59
3393 3811 5.227908 TCGCTTTCAATCTCGTTTTACTCT 58.772 37.500 0.00 0.00 0.00 3.24
3394 3812 6.384224 TCGCTTTCAATCTCGTTTTACTCTA 58.616 36.000 0.00 0.00 0.00 2.43
3395 3813 6.864685 TCGCTTTCAATCTCGTTTTACTCTAA 59.135 34.615 0.00 0.00 0.00 2.10
3396 3814 6.948777 CGCTTTCAATCTCGTTTTACTCTAAC 59.051 38.462 0.00 0.00 0.00 2.34
3397 3815 7.358931 CGCTTTCAATCTCGTTTTACTCTAACA 60.359 37.037 0.00 0.00 0.00 2.41
3398 3816 7.740781 GCTTTCAATCTCGTTTTACTCTAACAC 59.259 37.037 0.00 0.00 0.00 3.32
3399 3817 6.922980 TCAATCTCGTTTTACTCTAACACG 57.077 37.500 0.00 0.00 41.66 4.49
3400 3818 6.441274 TCAATCTCGTTTTACTCTAACACGT 58.559 36.000 1.82 0.00 41.22 4.49
3401 3819 6.919662 TCAATCTCGTTTTACTCTAACACGTT 59.080 34.615 0.00 0.00 41.22 3.99
3402 3820 8.075574 TCAATCTCGTTTTACTCTAACACGTTA 58.924 33.333 0.00 0.00 41.22 3.18
3403 3821 8.857216 CAATCTCGTTTTACTCTAACACGTTAT 58.143 33.333 0.00 0.00 41.22 1.89
3404 3822 8.612233 ATCTCGTTTTACTCTAACACGTTATC 57.388 34.615 0.00 0.00 41.22 1.75
3405 3823 7.584108 TCTCGTTTTACTCTAACACGTTATCA 58.416 34.615 0.00 0.00 41.22 2.15
3406 3824 7.747799 TCTCGTTTTACTCTAACACGTTATCAG 59.252 37.037 0.00 0.00 41.22 2.90
3407 3825 6.306356 TCGTTTTACTCTAACACGTTATCAGC 59.694 38.462 0.00 0.00 41.22 4.26
3408 3826 6.088483 CGTTTTACTCTAACACGTTATCAGCA 59.912 38.462 0.00 0.00 37.16 4.41
3409 3827 6.939551 TTTACTCTAACACGTTATCAGCAC 57.060 37.500 0.00 0.00 0.00 4.40
3410 3828 3.499048 ACTCTAACACGTTATCAGCACG 58.501 45.455 0.00 0.00 43.52 5.34
3411 3829 2.256174 TCTAACACGTTATCAGCACGC 58.744 47.619 0.00 0.00 41.53 5.34
3412 3830 2.094906 TCTAACACGTTATCAGCACGCT 60.095 45.455 0.00 0.00 41.53 5.07
3413 3831 1.068474 AACACGTTATCAGCACGCTC 58.932 50.000 0.00 0.00 41.53 5.03
3414 3832 0.243907 ACACGTTATCAGCACGCTCT 59.756 50.000 0.00 0.00 41.53 4.09
3415 3833 1.336887 ACACGTTATCAGCACGCTCTT 60.337 47.619 0.00 0.00 41.53 2.85
3416 3834 2.094906 ACACGTTATCAGCACGCTCTTA 60.095 45.455 0.00 0.00 41.53 2.10
3417 3835 2.279136 CACGTTATCAGCACGCTCTTAC 59.721 50.000 0.00 0.00 41.53 2.34
3418 3836 2.094906 ACGTTATCAGCACGCTCTTACA 60.095 45.455 0.00 0.00 41.53 2.41
3419 3837 2.531912 CGTTATCAGCACGCTCTTACAG 59.468 50.000 0.00 0.00 0.00 2.74
3420 3838 3.730963 CGTTATCAGCACGCTCTTACAGA 60.731 47.826 0.00 0.00 0.00 3.41
3421 3839 2.575694 ATCAGCACGCTCTTACAGAG 57.424 50.000 0.00 0.00 45.04 3.35
3422 3840 1.534729 TCAGCACGCTCTTACAGAGA 58.465 50.000 4.89 0.00 45.07 3.10
3433 3851 4.854399 CTCTTACAGAGAGCAATAGGACG 58.146 47.826 0.00 0.00 45.07 4.79
3434 3852 4.524053 TCTTACAGAGAGCAATAGGACGA 58.476 43.478 0.00 0.00 0.00 4.20
3435 3853 4.576873 TCTTACAGAGAGCAATAGGACGAG 59.423 45.833 0.00 0.00 0.00 4.18
3436 3854 2.729194 ACAGAGAGCAATAGGACGAGT 58.271 47.619 0.00 0.00 0.00 4.18
3437 3855 2.685897 ACAGAGAGCAATAGGACGAGTC 59.314 50.000 0.00 0.00 0.00 3.36
3438 3856 1.944024 AGAGAGCAATAGGACGAGTCG 59.056 52.381 11.85 11.85 0.00 4.18
3439 3857 1.002251 GAGAGCAATAGGACGAGTCGG 60.002 57.143 18.30 0.00 0.00 4.79
3440 3858 1.022735 GAGCAATAGGACGAGTCGGA 58.977 55.000 18.30 0.00 0.00 4.55
3441 3859 1.002251 GAGCAATAGGACGAGTCGGAG 60.002 57.143 18.30 0.00 0.00 4.63
3442 3860 0.030908 GCAATAGGACGAGTCGGAGG 59.969 60.000 18.30 0.15 0.00 4.30
3443 3861 1.390565 CAATAGGACGAGTCGGAGGT 58.609 55.000 18.30 0.00 0.00 3.85
3444 3862 2.569059 CAATAGGACGAGTCGGAGGTA 58.431 52.381 18.30 3.17 0.00 3.08
3445 3863 2.547299 ATAGGACGAGTCGGAGGTAG 57.453 55.000 18.30 0.00 0.00 3.18
3446 3864 0.179062 TAGGACGAGTCGGAGGTAGC 60.179 60.000 18.30 0.00 0.00 3.58
3447 3865 2.479750 GGACGAGTCGGAGGTAGCC 61.480 68.421 18.30 2.70 0.00 3.93
3448 3866 2.439883 ACGAGTCGGAGGTAGCCC 60.440 66.667 18.30 0.00 0.00 5.19
3450 3868 3.217743 GAGTCGGAGGTAGCCCGG 61.218 72.222 17.83 0.00 46.47 5.73
3455 3873 3.942439 GGAGGTAGCCCGGCCATC 61.942 72.222 5.55 0.00 35.12 3.51
3456 3874 3.161450 GAGGTAGCCCGGCCATCA 61.161 66.667 5.55 0.00 35.12 3.07
3457 3875 2.448542 AGGTAGCCCGGCCATCAT 60.449 61.111 5.55 0.00 35.12 2.45
3458 3876 2.032681 GGTAGCCCGGCCATCATC 59.967 66.667 5.55 0.00 0.00 2.92
3459 3877 2.357517 GTAGCCCGGCCATCATCG 60.358 66.667 5.55 0.00 0.00 3.84
3460 3878 3.625897 TAGCCCGGCCATCATCGG 61.626 66.667 5.55 0.00 45.29 4.18
3467 3885 2.357517 GCCATCATCGGCGGTAGG 60.358 66.667 7.21 3.84 43.52 3.18
3468 3886 2.867855 GCCATCATCGGCGGTAGGA 61.868 63.158 7.21 0.00 43.52 2.94
3469 3887 1.006102 CCATCATCGGCGGTAGGAC 60.006 63.158 7.21 0.00 0.00 3.85
3477 3895 4.828296 GCGGTAGGACGAGGGGGA 62.828 72.222 0.00 0.00 35.47 4.81
3478 3896 2.518825 CGGTAGGACGAGGGGGAG 60.519 72.222 0.00 0.00 35.47 4.30
3479 3897 2.123382 GGTAGGACGAGGGGGAGG 60.123 72.222 0.00 0.00 0.00 4.30
3480 3898 2.838693 GTAGGACGAGGGGGAGGC 60.839 72.222 0.00 0.00 0.00 4.70
3481 3899 3.352748 TAGGACGAGGGGGAGGCA 61.353 66.667 0.00 0.00 0.00 4.75
3482 3900 3.375443 TAGGACGAGGGGGAGGCAG 62.375 68.421 0.00 0.00 0.00 4.85
3504 3922 2.741211 GGCCAACGGTCGAACTCC 60.741 66.667 0.00 0.00 0.00 3.85
3505 3923 2.029964 GCCAACGGTCGAACTCCA 59.970 61.111 0.00 0.00 0.00 3.86
3506 3924 2.027625 GCCAACGGTCGAACTCCAG 61.028 63.158 0.00 0.00 0.00 3.86
3507 3925 1.663739 CCAACGGTCGAACTCCAGA 59.336 57.895 0.00 0.00 0.00 3.86
3508 3926 0.666577 CCAACGGTCGAACTCCAGAC 60.667 60.000 0.00 0.00 36.70 3.51
3509 3927 0.314302 CAACGGTCGAACTCCAGACT 59.686 55.000 0.00 0.00 37.52 3.24
3510 3928 0.314302 AACGGTCGAACTCCAGACTG 59.686 55.000 0.00 0.00 46.23 3.51
3511 3929 1.213013 CGGTCGAACTCCAGACTGG 59.787 63.158 15.99 15.99 39.42 4.00
3512 3930 1.241990 CGGTCGAACTCCAGACTGGA 61.242 60.000 22.97 22.97 45.98 3.86
3513 3931 0.244178 GGTCGAACTCCAGACTGGAC 59.756 60.000 20.74 10.13 42.67 4.02
3514 3932 0.244178 GTCGAACTCCAGACTGGACC 59.756 60.000 20.74 11.20 42.67 4.46
3515 3933 0.898789 TCGAACTCCAGACTGGACCC 60.899 60.000 20.74 10.86 42.67 4.46
3516 3934 1.185618 CGAACTCCAGACTGGACCCA 61.186 60.000 20.74 0.00 42.67 4.51
3517 3935 1.056660 GAACTCCAGACTGGACCCAA 58.943 55.000 20.74 0.00 42.67 4.12
3518 3936 1.002544 GAACTCCAGACTGGACCCAAG 59.997 57.143 20.74 12.67 42.67 3.61
3519 3937 1.298014 CTCCAGACTGGACCCAAGC 59.702 63.158 20.74 0.00 42.67 4.01
3520 3938 2.046892 CCAGACTGGACCCAAGCG 60.047 66.667 17.22 0.00 40.96 4.68
3521 3939 2.046892 CAGACTGGACCCAAGCGG 60.047 66.667 0.00 0.00 37.81 5.52
3522 3940 4.021925 AGACTGGACCCAAGCGGC 62.022 66.667 0.00 0.00 33.26 6.53
3564 3982 3.741476 GCTGAACAGCGCAAGGGG 61.741 66.667 11.47 0.00 45.29 4.79
3565 3983 2.032528 CTGAACAGCGCAAGGGGA 59.967 61.111 11.47 0.00 38.28 4.81
3566 3984 2.281484 TGAACAGCGCAAGGGGAC 60.281 61.111 11.47 0.00 38.28 4.46
3567 3985 2.281484 GAACAGCGCAAGGGGACA 60.281 61.111 11.47 0.00 38.28 4.02
3568 3986 2.594592 AACAGCGCAAGGGGACAC 60.595 61.111 11.47 0.00 38.28 3.67
3569 3987 4.988598 ACAGCGCAAGGGGACACG 62.989 66.667 11.47 0.00 38.28 4.49
3597 4015 4.148825 GCCATCGGCCGTGACTCT 62.149 66.667 27.15 0.98 44.06 3.24
3598 4016 2.105128 CCATCGGCCGTGACTCTC 59.895 66.667 27.15 0.00 0.00 3.20
3599 4017 2.278206 CATCGGCCGTGACTCTCG 60.278 66.667 27.15 1.78 0.00 4.04
3603 4021 4.131088 GGCCGTGACTCTCGGGTC 62.131 72.222 18.70 5.42 46.90 4.46
3604 4022 3.063084 GCCGTGACTCTCGGGTCT 61.063 66.667 18.70 0.00 46.90 3.85
3605 4023 3.053849 GCCGTGACTCTCGGGTCTC 62.054 68.421 18.70 1.38 46.90 3.36
3606 4024 2.751913 CCGTGACTCTCGGGTCTCG 61.752 68.421 12.87 12.87 46.15 4.04
3607 4025 2.751913 CGTGACTCTCGGGTCTCGG 61.752 68.421 12.19 0.00 44.27 4.63
3608 4026 2.750637 TGACTCTCGGGTCTCGGC 60.751 66.667 0.00 0.00 39.77 5.54
3609 4027 2.750637 GACTCTCGGGTCTCGGCA 60.751 66.667 0.00 0.00 39.77 5.69
3610 4028 2.282958 ACTCTCGGGTCTCGGCAA 60.283 61.111 0.00 0.00 39.77 4.52
3611 4029 1.874345 GACTCTCGGGTCTCGGCAAA 61.874 60.000 0.00 0.00 39.77 3.68
3612 4030 1.292223 CTCTCGGGTCTCGGCAAAA 59.708 57.895 0.00 0.00 39.77 2.44
3613 4031 0.737715 CTCTCGGGTCTCGGCAAAAG 60.738 60.000 0.00 0.00 39.77 2.27
3614 4032 2.358247 TCGGGTCTCGGCAAAAGC 60.358 61.111 0.00 0.00 39.77 3.51
3615 4033 3.788766 CGGGTCTCGGCAAAAGCG 61.789 66.667 0.00 0.00 34.75 4.68
3616 4034 4.103103 GGGTCTCGGCAAAAGCGC 62.103 66.667 0.00 0.00 0.00 5.92
3624 4042 4.476410 GCAAAAGCGCCCGGTAGC 62.476 66.667 2.29 10.05 0.00 3.58
3647 4065 4.201679 CGACGATGGGCACGGCTA 62.202 66.667 0.00 0.00 36.56 3.93
3648 4066 2.585247 GACGATGGGCACGGCTAC 60.585 66.667 0.00 0.00 35.75 3.58
3659 4077 4.303853 CGGCTACGTCTGGATTCG 57.696 61.111 0.00 0.00 34.81 3.34
3660 4078 1.725665 CGGCTACGTCTGGATTCGA 59.274 57.895 0.00 0.00 34.81 3.71
3661 4079 0.591741 CGGCTACGTCTGGATTCGAC 60.592 60.000 0.00 0.00 34.81 4.20
3662 4080 0.248949 GGCTACGTCTGGATTCGACC 60.249 60.000 0.00 0.00 0.00 4.79
3663 4081 0.248949 GCTACGTCTGGATTCGACCC 60.249 60.000 0.00 0.00 0.00 4.46
3664 4082 0.384669 CTACGTCTGGATTCGACCCC 59.615 60.000 0.00 0.00 0.00 4.95
3665 4083 1.378882 TACGTCTGGATTCGACCCCG 61.379 60.000 0.00 0.87 37.07 5.73
3666 4084 2.202892 GTCTGGATTCGACCCCGC 60.203 66.667 1.00 0.00 35.37 6.13
3667 4085 2.363795 TCTGGATTCGACCCCGCT 60.364 61.111 1.00 0.00 35.37 5.52
3668 4086 2.202932 CTGGATTCGACCCCGCTG 60.203 66.667 1.00 0.00 35.37 5.18
3669 4087 3.740128 CTGGATTCGACCCCGCTGG 62.740 68.421 1.00 0.00 41.37 4.85
3670 4088 3.467226 GGATTCGACCCCGCTGGA 61.467 66.667 0.00 0.00 38.00 3.86
3671 4089 2.202892 GATTCGACCCCGCTGGAC 60.203 66.667 0.00 0.00 38.00 4.02
3672 4090 3.735037 GATTCGACCCCGCTGGACC 62.735 68.421 0.00 0.00 38.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 223 8.480643 TGTGAACAAAATTTAAAAACCGTGAT 57.519 26.923 0.00 0.00 0.00 3.06
277 301 7.825331 TTTGGGATATATGCCGAACAATTTA 57.175 32.000 19.31 0.00 41.80 1.40
426 454 9.756461 TTTAAATGCGGACAAACTTTTTAAAAC 57.244 25.926 0.00 0.00 29.23 2.43
464 492 5.411669 ACAAACGCCAAACCATTTTAAAACA 59.588 32.000 1.97 0.00 0.00 2.83
474 503 2.969628 ATTTGACAAACGCCAAACCA 57.030 40.000 1.94 0.00 35.42 3.67
556 585 5.929992 ACGAGATCATAAAGAACCGAACAAA 59.070 36.000 0.00 0.00 0.00 2.83
566 595 5.525012 CCTGAATTGCACGAGATCATAAAGA 59.475 40.000 0.00 0.00 0.00 2.52
572 601 2.621338 GACCTGAATTGCACGAGATCA 58.379 47.619 0.00 0.00 0.00 2.92
584 613 2.496470 GACCTAACCAGTCGACCTGAAT 59.504 50.000 13.01 5.14 44.49 2.57
626 678 1.005394 GAGAGAACGAACCGGCCAA 60.005 57.895 0.00 0.00 0.00 4.52
628 680 2.506438 CGAGAGAACGAACCGGCC 60.506 66.667 0.00 0.00 35.09 6.13
666 719 2.882742 GCTCGAGCGTGAAGAAATTT 57.117 45.000 23.61 0.00 0.00 1.82
687 741 2.487934 CCGGCACATTTAGAGATCAGG 58.512 52.381 0.00 0.00 0.00 3.86
692 746 1.223487 GGGCCGGCACATTTAGAGA 59.777 57.895 30.85 0.00 0.00 3.10
695 749 0.466189 AGATGGGCCGGCACATTTAG 60.466 55.000 42.70 0.00 40.62 1.85
702 756 0.471022 TAGATGTAGATGGGCCGGCA 60.471 55.000 30.85 9.36 0.00 5.69
715 769 3.963428 AGTTTCGCTCAAGGTAGATGT 57.037 42.857 0.00 0.00 0.00 3.06
726 780 1.663494 CGTCAAGCAAAGTTTCGCTC 58.337 50.000 11.34 2.01 37.54 5.03
759 817 0.041684 TCATGGGAGCTCCTGTCTGA 59.958 55.000 31.36 23.10 36.20 3.27
760 818 1.129917 ATCATGGGAGCTCCTGTCTG 58.870 55.000 31.36 21.43 36.20 3.51
761 819 1.129917 CATCATGGGAGCTCCTGTCT 58.870 55.000 31.36 12.26 36.20 3.41
773 831 4.916358 GAGGGAAGGCCATCATGG 57.084 61.111 10.67 0.00 44.29 3.66
798 856 8.780249 GGAGATTGCTGTTAACTACTGTAAAAA 58.220 33.333 7.22 0.00 34.87 1.94
799 857 8.154856 AGGAGATTGCTGTTAACTACTGTAAAA 58.845 33.333 7.22 0.00 34.87 1.52
800 858 7.602644 CAGGAGATTGCTGTTAACTACTGTAAA 59.397 37.037 7.22 0.00 35.54 2.01
855 913 2.657237 CTCTGAAACGGACGGGCT 59.343 61.111 0.00 0.00 0.00 5.19
859 917 1.538512 TGTAGACCTCTGAAACGGACG 59.461 52.381 0.00 0.00 0.00 4.79
864 922 3.664107 TGTGCATGTAGACCTCTGAAAC 58.336 45.455 0.00 0.00 0.00 2.78
874 932 4.320023 ACCGTTTACAATGTGCATGTAGA 58.680 39.130 0.00 0.00 34.92 2.59
877 935 4.314740 AAACCGTTTACAATGTGCATGT 57.685 36.364 0.00 0.00 34.81 3.21
878 936 5.164100 GCTTAAACCGTTTACAATGTGCATG 60.164 40.000 3.10 0.00 0.00 4.06
879 937 4.920927 GCTTAAACCGTTTACAATGTGCAT 59.079 37.500 3.10 0.00 0.00 3.96
880 938 4.291783 GCTTAAACCGTTTACAATGTGCA 58.708 39.130 3.10 0.00 0.00 4.57
881 939 3.671459 GGCTTAAACCGTTTACAATGTGC 59.329 43.478 3.10 2.69 0.00 4.57
882 940 4.231439 GGGCTTAAACCGTTTACAATGTG 58.769 43.478 3.10 0.00 0.00 3.21
891 949 2.188062 TCGAATGGGCTTAAACCGTT 57.812 45.000 3.60 3.60 39.83 4.44
909 967 3.127030 GGAGTCGTGGAAAAATGGACATC 59.873 47.826 0.00 0.00 0.00 3.06
912 970 2.225727 GTGGAGTCGTGGAAAAATGGAC 59.774 50.000 0.00 0.00 0.00 4.02
913 971 2.500229 GTGGAGTCGTGGAAAAATGGA 58.500 47.619 0.00 0.00 0.00 3.41
914 972 1.539827 GGTGGAGTCGTGGAAAAATGG 59.460 52.381 0.00 0.00 0.00 3.16
916 974 1.546998 GGGGTGGAGTCGTGGAAAAAT 60.547 52.381 0.00 0.00 0.00 1.82
917 975 0.179012 GGGGTGGAGTCGTGGAAAAA 60.179 55.000 0.00 0.00 0.00 1.94
921 979 2.283676 GAGGGGTGGAGTCGTGGA 60.284 66.667 0.00 0.00 0.00 4.02
922 980 3.391382 GGAGGGGTGGAGTCGTGG 61.391 72.222 0.00 0.00 0.00 4.94
923 981 3.760035 CGGAGGGGTGGAGTCGTG 61.760 72.222 0.00 0.00 0.00 4.35
1094 1152 3.934962 GGCAGCGGAGGAGGGATC 61.935 72.222 0.00 0.00 0.00 3.36
1229 1296 6.033203 AGGGGATTATATCTAGGGAGTAGC 57.967 45.833 0.00 0.00 0.00 3.58
1245 1333 2.666098 CCGGTGGTCGAAGGGGATT 61.666 63.158 0.00 0.00 42.43 3.01
1269 1366 0.396435 ATTGGAACTGGTCAGCGTCA 59.604 50.000 0.00 0.00 0.00 4.35
1270 1367 1.079503 GATTGGAACTGGTCAGCGTC 58.920 55.000 0.00 0.00 0.00 5.19
1271 1368 0.321653 GGATTGGAACTGGTCAGCGT 60.322 55.000 0.00 0.00 0.00 5.07
1348 1451 1.330655 ATCCTGTTGACGGCGAGGAT 61.331 55.000 16.62 17.65 39.98 3.24
1493 1623 1.595311 TCCATATTGCCACCTCTGGT 58.405 50.000 0.00 0.00 40.17 4.00
1612 1751 2.602878 ACCACGTAATAGCACTGAACG 58.397 47.619 0.00 0.00 39.37 3.95
1742 1884 1.073763 CCATCTCAAACAGGTCACCCA 59.926 52.381 0.00 0.00 0.00 4.51
1821 1966 3.118629 TCTCGCTTTGATAGTCCTGCAAT 60.119 43.478 0.00 0.00 0.00 3.56
1834 1979 2.275318 GAAGGTCCAGATCTCGCTTTG 58.725 52.381 0.00 0.00 0.00 2.77
1843 1988 0.036010 CGGCACTTGAAGGTCCAGAT 60.036 55.000 0.00 0.00 0.00 2.90
1882 2027 1.000843 TCCACACCGTGTCTTGATCTG 59.999 52.381 0.00 0.00 0.00 2.90
1891 2036 2.151202 GTCATGATTTCCACACCGTGT 58.849 47.619 0.00 0.00 0.00 4.49
1926 2071 0.322726 CAGGCATGACCACCACATGA 60.323 55.000 0.00 0.00 45.22 3.07
2137 2283 1.087501 GTCTTCAAATCACCGGGAGC 58.912 55.000 6.32 0.00 0.00 4.70
2146 2292 6.400515 CGAGCTCACTTAACTGTCTTCAAATC 60.401 42.308 15.40 0.00 0.00 2.17
2157 2305 0.314302 ACGCACGAGCTCACTTAACT 59.686 50.000 15.40 0.00 39.10 2.24
2161 2309 1.848932 TACGACGCACGAGCTCACTT 61.849 55.000 15.40 0.00 45.77 3.16
2205 2353 0.824109 TTCACCCATACTCCAGCTCG 59.176 55.000 0.00 0.00 0.00 5.03
2371 2693 2.430332 ACCCACACCAAAATGACTTGTG 59.570 45.455 0.00 0.00 37.83 3.33
2390 2715 3.636153 AGTTAGCCCATCTTTCAGACC 57.364 47.619 0.00 0.00 0.00 3.85
2422 2755 5.552178 ACTGTCCAGTTCAAGGAAATAGAC 58.448 41.667 0.00 0.00 38.83 2.59
2512 2847 9.743057 AACAGTCAATTATTCGTTTCAATGAAA 57.257 25.926 4.03 4.03 37.46 2.69
2527 2862 9.715121 ACCTAGATAAAAACGAACAGTCAATTA 57.285 29.630 0.00 0.00 0.00 1.40
2617 2952 2.996621 CGTTAGCTGGAAGAGAACCAAG 59.003 50.000 0.00 0.00 36.95 3.61
2637 2974 1.987770 GCAATCTGCCACATTTTGTCG 59.012 47.619 0.00 0.00 37.42 4.35
2640 2977 2.756829 TGTGCAATCTGCCACATTTTG 58.243 42.857 0.00 0.00 44.23 2.44
2664 3028 3.860536 GCTCGTCTAGAAATCAGGTGAAC 59.139 47.826 0.00 0.00 0.00 3.18
2704 3068 6.054860 AGTGCTCCAGCTCTTCTAAAAATA 57.945 37.500 0.00 0.00 41.50 1.40
2747 3112 6.554419 TCATAAAGGAAAATTGACTGATGCG 58.446 36.000 0.00 0.00 0.00 4.73
2884 3301 1.866015 ATCTGTCAAGGGATCGACCA 58.134 50.000 6.41 0.00 41.20 4.02
2891 3308 5.509498 CTTCCCATTTAATCTGTCAAGGGA 58.491 41.667 0.00 0.00 42.06 4.20
2896 3313 3.627237 GGCCCTTCCCATTTAATCTGTCA 60.627 47.826 0.00 0.00 0.00 3.58
2901 3318 3.032265 ACAGGCCCTTCCCATTTAATC 57.968 47.619 0.00 0.00 34.51 1.75
2908 3325 0.471022 GGAAAAACAGGCCCTTCCCA 60.471 55.000 0.00 0.00 32.71 4.37
2920 3337 8.147704 TCAACAGGAAAATATGGAAGGAAAAAC 58.852 33.333 0.00 0.00 0.00 2.43
2924 3341 7.010160 ACTTCAACAGGAAAATATGGAAGGAA 58.990 34.615 0.00 0.00 35.90 3.36
2926 3343 6.840780 ACTTCAACAGGAAAATATGGAAGG 57.159 37.500 0.00 0.00 35.90 3.46
3021 3439 4.743955 GCTTGGGAGTGTCTTTACTGAACT 60.744 45.833 0.00 0.00 0.00 3.01
3024 3442 2.972713 AGCTTGGGAGTGTCTTTACTGA 59.027 45.455 0.00 0.00 0.00 3.41
3029 3447 1.986882 CCAAGCTTGGGAGTGTCTTT 58.013 50.000 34.08 0.00 44.70 2.52
3030 3448 3.733709 CCAAGCTTGGGAGTGTCTT 57.266 52.632 34.08 0.00 44.70 3.01
3040 3458 1.743252 GCTCCCGACTCCAAGCTTG 60.743 63.158 19.93 19.93 0.00 4.01
3041 3459 1.915769 AGCTCCCGACTCCAAGCTT 60.916 57.895 0.00 0.00 42.23 3.74
3042 3460 2.284258 AGCTCCCGACTCCAAGCT 60.284 61.111 0.00 0.00 40.18 3.74
3043 3461 1.965754 ATCAGCTCCCGACTCCAAGC 61.966 60.000 0.00 0.00 34.95 4.01
3044 3462 0.103937 GATCAGCTCCCGACTCCAAG 59.896 60.000 0.00 0.00 0.00 3.61
3045 3463 1.667154 CGATCAGCTCCCGACTCCAA 61.667 60.000 0.00 0.00 0.00 3.53
3046 3464 2.121538 CGATCAGCTCCCGACTCCA 61.122 63.158 0.00 0.00 0.00 3.86
3047 3465 0.818445 TACGATCAGCTCCCGACTCC 60.818 60.000 6.00 0.00 0.00 3.85
3048 3466 0.589223 CTACGATCAGCTCCCGACTC 59.411 60.000 6.00 0.00 0.00 3.36
3049 3467 0.180642 TCTACGATCAGCTCCCGACT 59.819 55.000 6.00 0.00 0.00 4.18
3050 3468 1.068885 CATCTACGATCAGCTCCCGAC 60.069 57.143 6.00 0.00 0.00 4.79
3051 3469 1.239347 CATCTACGATCAGCTCCCGA 58.761 55.000 6.00 0.00 0.00 5.14
3052 3470 0.955178 ACATCTACGATCAGCTCCCG 59.045 55.000 0.00 0.00 0.00 5.14
3053 3471 1.957177 TCACATCTACGATCAGCTCCC 59.043 52.381 0.00 0.00 0.00 4.30
3054 3472 3.717400 TTCACATCTACGATCAGCTCC 57.283 47.619 0.00 0.00 0.00 4.70
3055 3473 5.982516 AGAATTTCACATCTACGATCAGCTC 59.017 40.000 0.00 0.00 0.00 4.09
3056 3474 5.911752 AGAATTTCACATCTACGATCAGCT 58.088 37.500 0.00 0.00 0.00 4.24
3057 3475 6.256539 TGAAGAATTTCACATCTACGATCAGC 59.743 38.462 0.00 0.00 38.37 4.26
3058 3476 7.761651 TGAAGAATTTCACATCTACGATCAG 57.238 36.000 0.00 0.00 38.37 2.90
3071 3489 5.554070 TGAGATGCTGAGTGAAGAATTTCA 58.446 37.500 0.00 0.00 40.92 2.69
3072 3490 5.447548 GCTGAGATGCTGAGTGAAGAATTTC 60.448 44.000 0.00 0.00 0.00 2.17
3073 3491 4.395542 GCTGAGATGCTGAGTGAAGAATTT 59.604 41.667 0.00 0.00 0.00 1.82
3074 3492 3.940221 GCTGAGATGCTGAGTGAAGAATT 59.060 43.478 0.00 0.00 0.00 2.17
3075 3493 3.533547 GCTGAGATGCTGAGTGAAGAAT 58.466 45.455 0.00 0.00 0.00 2.40
3076 3494 2.673326 CGCTGAGATGCTGAGTGAAGAA 60.673 50.000 0.00 0.00 26.94 2.52
3077 3495 1.135170 CGCTGAGATGCTGAGTGAAGA 60.135 52.381 0.00 0.00 26.94 2.87
3078 3496 1.135170 TCGCTGAGATGCTGAGTGAAG 60.135 52.381 0.00 0.00 31.94 3.02
3079 3497 0.890683 TCGCTGAGATGCTGAGTGAA 59.109 50.000 0.00 0.00 31.94 3.18
3080 3498 0.455005 CTCGCTGAGATGCTGAGTGA 59.545 55.000 0.00 0.00 33.65 3.41
3081 3499 0.173029 ACTCGCTGAGATGCTGAGTG 59.827 55.000 11.64 0.00 41.41 3.51
3082 3500 0.894141 AACTCGCTGAGATGCTGAGT 59.106 50.000 11.64 0.00 43.14 3.41
3083 3501 2.098934 AGTAACTCGCTGAGATGCTGAG 59.901 50.000 11.64 0.00 38.52 3.35
3084 3502 2.095461 AGTAACTCGCTGAGATGCTGA 58.905 47.619 11.64 0.00 28.05 4.26
3085 3503 2.191802 CAGTAACTCGCTGAGATGCTG 58.808 52.381 14.76 14.76 38.32 4.41
3086 3504 1.821753 ACAGTAACTCGCTGAGATGCT 59.178 47.619 11.64 6.60 37.40 3.79
3087 3505 2.159310 AGACAGTAACTCGCTGAGATGC 60.159 50.000 11.64 4.65 37.40 3.91
3088 3506 3.127721 TGAGACAGTAACTCGCTGAGATG 59.872 47.826 11.64 7.52 37.40 2.90
3089 3507 3.348119 TGAGACAGTAACTCGCTGAGAT 58.652 45.455 11.64 3.63 37.40 2.75
3090 3508 2.744741 CTGAGACAGTAACTCGCTGAGA 59.255 50.000 11.64 0.00 37.40 3.27
3091 3509 2.486203 ACTGAGACAGTAACTCGCTGAG 59.514 50.000 2.43 4.36 43.46 3.35
3092 3510 2.505405 ACTGAGACAGTAACTCGCTGA 58.495 47.619 2.43 0.00 43.46 4.26
3093 3511 2.999507 ACTGAGACAGTAACTCGCTG 57.000 50.000 2.43 0.00 43.46 5.18
3102 3520 6.183361 ACTCAAAACCTGAATACTGAGACAGT 60.183 38.462 9.32 9.32 39.91 3.55
3103 3521 6.146837 CACTCAAAACCTGAATACTGAGACAG 59.853 42.308 4.02 0.00 35.40 3.51
3104 3522 5.991606 CACTCAAAACCTGAATACTGAGACA 59.008 40.000 4.02 0.00 35.40 3.41
3105 3523 6.223852 TCACTCAAAACCTGAATACTGAGAC 58.776 40.000 4.02 0.00 35.40 3.36
3106 3524 6.419484 TCACTCAAAACCTGAATACTGAGA 57.581 37.500 4.02 0.00 35.40 3.27
3107 3525 7.678947 AATCACTCAAAACCTGAATACTGAG 57.321 36.000 0.00 0.00 37.04 3.35
3108 3526 7.174946 GGAAATCACTCAAAACCTGAATACTGA 59.825 37.037 0.00 0.00 32.17 3.41
3109 3527 7.040478 TGGAAATCACTCAAAACCTGAATACTG 60.040 37.037 0.00 0.00 32.17 2.74
3110 3528 7.004086 TGGAAATCACTCAAAACCTGAATACT 58.996 34.615 0.00 0.00 32.17 2.12
3111 3529 7.214467 TGGAAATCACTCAAAACCTGAATAC 57.786 36.000 0.00 0.00 32.17 1.89
3112 3530 7.669304 TCATGGAAATCACTCAAAACCTGAATA 59.331 33.333 0.00 0.00 32.17 1.75
3113 3531 6.494491 TCATGGAAATCACTCAAAACCTGAAT 59.506 34.615 0.00 0.00 32.17 2.57
3114 3532 5.832595 TCATGGAAATCACTCAAAACCTGAA 59.167 36.000 0.00 0.00 32.17 3.02
3115 3533 5.384336 TCATGGAAATCACTCAAAACCTGA 58.616 37.500 0.00 0.00 0.00 3.86
3116 3534 5.710513 TCATGGAAATCACTCAAAACCTG 57.289 39.130 0.00 0.00 0.00 4.00
3117 3535 6.694447 CATTCATGGAAATCACTCAAAACCT 58.306 36.000 0.00 0.00 0.00 3.50
3118 3536 6.956299 CATTCATGGAAATCACTCAAAACC 57.044 37.500 0.00 0.00 0.00 3.27
3134 3552 8.915057 ATTCCTAACAGATACTTCCATTCATG 57.085 34.615 0.00 0.00 0.00 3.07
3177 3595 9.293404 ATGACTATTCATTAATTAGCATGTGCT 57.707 29.630 12.66 12.66 46.45 4.40
3192 3610 5.829924 CACCCCTTTGCTAATGACTATTCAT 59.170 40.000 0.00 0.00 44.98 2.57
3193 3611 5.192927 CACCCCTTTGCTAATGACTATTCA 58.807 41.667 0.00 0.00 35.73 2.57
3194 3612 5.066505 CACACCCCTTTGCTAATGACTATTC 59.933 44.000 0.00 0.00 0.00 1.75
3195 3613 4.949856 CACACCCCTTTGCTAATGACTATT 59.050 41.667 0.00 0.00 0.00 1.73
3196 3614 4.018415 ACACACCCCTTTGCTAATGACTAT 60.018 41.667 0.00 0.00 0.00 2.12
3197 3615 3.329520 ACACACCCCTTTGCTAATGACTA 59.670 43.478 0.00 0.00 0.00 2.59
3198 3616 2.108250 ACACACCCCTTTGCTAATGACT 59.892 45.455 0.00 0.00 0.00 3.41
3199 3617 2.488153 GACACACCCCTTTGCTAATGAC 59.512 50.000 0.00 0.00 0.00 3.06
3200 3618 2.554344 GGACACACCCCTTTGCTAATGA 60.554 50.000 0.00 0.00 0.00 2.57
3201 3619 1.818674 GGACACACCCCTTTGCTAATG 59.181 52.381 0.00 0.00 0.00 1.90
3202 3620 1.427368 TGGACACACCCCTTTGCTAAT 59.573 47.619 0.00 0.00 38.00 1.73
3203 3621 0.847373 TGGACACACCCCTTTGCTAA 59.153 50.000 0.00 0.00 38.00 3.09
3204 3622 0.847373 TTGGACACACCCCTTTGCTA 59.153 50.000 0.00 0.00 38.00 3.49
3205 3623 0.755327 GTTGGACACACCCCTTTGCT 60.755 55.000 0.00 0.00 38.00 3.91
3206 3624 0.755327 AGTTGGACACACCCCTTTGC 60.755 55.000 0.00 0.00 38.00 3.68
3207 3625 1.318576 GAGTTGGACACACCCCTTTG 58.681 55.000 0.00 0.00 38.00 2.77
3208 3626 0.185175 GGAGTTGGACACACCCCTTT 59.815 55.000 0.00 0.00 38.00 3.11
3209 3627 1.844130 GGAGTTGGACACACCCCTT 59.156 57.895 0.00 0.00 38.00 3.95
3210 3628 2.516888 CGGAGTTGGACACACCCCT 61.517 63.158 0.00 0.00 38.00 4.79
3211 3629 2.032071 CGGAGTTGGACACACCCC 59.968 66.667 0.00 0.00 38.00 4.95
3212 3630 0.883370 GTTCGGAGTTGGACACACCC 60.883 60.000 0.00 0.00 38.00 4.61
3213 3631 0.179067 TGTTCGGAGTTGGACACACC 60.179 55.000 0.00 0.00 39.54 4.16
3214 3632 1.217882 CTGTTCGGAGTTGGACACAC 58.782 55.000 0.00 0.00 0.00 3.82
3215 3633 0.828022 ACTGTTCGGAGTTGGACACA 59.172 50.000 0.00 0.00 0.00 3.72
3216 3634 1.202486 TGACTGTTCGGAGTTGGACAC 60.202 52.381 0.00 0.00 0.00 3.67
3217 3635 1.116308 TGACTGTTCGGAGTTGGACA 58.884 50.000 0.00 0.00 0.00 4.02
3218 3636 2.069273 CATGACTGTTCGGAGTTGGAC 58.931 52.381 0.00 0.00 0.00 4.02
3219 3637 1.691976 ACATGACTGTTCGGAGTTGGA 59.308 47.619 0.00 0.00 28.70 3.53
3220 3638 2.069273 GACATGACTGTTCGGAGTTGG 58.931 52.381 0.00 0.00 35.14 3.77
3221 3639 2.069273 GGACATGACTGTTCGGAGTTG 58.931 52.381 0.00 0.00 35.14 3.16
3222 3640 1.002087 GGGACATGACTGTTCGGAGTT 59.998 52.381 0.00 0.00 35.14 3.01
3223 3641 0.608640 GGGACATGACTGTTCGGAGT 59.391 55.000 0.00 0.00 35.14 3.85
3224 3642 0.898320 AGGGACATGACTGTTCGGAG 59.102 55.000 0.00 0.00 35.14 4.63
3225 3643 1.275291 GAAGGGACATGACTGTTCGGA 59.725 52.381 0.00 0.00 35.14 4.55
3226 3644 1.276421 AGAAGGGACATGACTGTTCGG 59.724 52.381 0.00 0.00 35.14 4.30
3227 3645 2.751166 AGAAGGGACATGACTGTTCG 57.249 50.000 0.00 0.00 35.14 3.95
3228 3646 5.606348 AGATAGAAGGGACATGACTGTTC 57.394 43.478 0.00 0.92 35.14 3.18
3229 3647 6.214412 AGAAAGATAGAAGGGACATGACTGTT 59.786 38.462 0.00 0.00 35.14 3.16
3230 3648 5.723887 AGAAAGATAGAAGGGACATGACTGT 59.276 40.000 0.00 0.00 38.67 3.55
3231 3649 6.232581 AGAAAGATAGAAGGGACATGACTG 57.767 41.667 0.00 0.00 0.00 3.51
3232 3650 8.428063 CAATAGAAAGATAGAAGGGACATGACT 58.572 37.037 0.00 0.00 0.00 3.41
3233 3651 7.172361 GCAATAGAAAGATAGAAGGGACATGAC 59.828 40.741 0.00 0.00 0.00 3.06
3234 3652 7.220030 GCAATAGAAAGATAGAAGGGACATGA 58.780 38.462 0.00 0.00 0.00 3.07
3235 3653 6.429385 GGCAATAGAAAGATAGAAGGGACATG 59.571 42.308 0.00 0.00 0.00 3.21
3236 3654 6.101734 TGGCAATAGAAAGATAGAAGGGACAT 59.898 38.462 0.00 0.00 0.00 3.06
3237 3655 5.428457 TGGCAATAGAAAGATAGAAGGGACA 59.572 40.000 0.00 0.00 0.00 4.02
3238 3656 5.930135 TGGCAATAGAAAGATAGAAGGGAC 58.070 41.667 0.00 0.00 0.00 4.46
3239 3657 6.575244 TTGGCAATAGAAAGATAGAAGGGA 57.425 37.500 0.00 0.00 0.00 4.20
3240 3658 7.609532 CCTATTGGCAATAGAAAGATAGAAGGG 59.390 40.741 36.90 19.36 42.80 3.95
3241 3659 8.558973 CCTATTGGCAATAGAAAGATAGAAGG 57.441 38.462 36.90 21.15 42.80 3.46
3259 3677 1.281867 TCCAGAACAGGTGCCTATTGG 59.718 52.381 0.00 0.00 0.00 3.16
3260 3678 2.636830 CTCCAGAACAGGTGCCTATTG 58.363 52.381 0.00 0.00 0.00 1.90
3261 3679 1.561542 CCTCCAGAACAGGTGCCTATT 59.438 52.381 0.00 0.00 0.00 1.73
3262 3680 1.207791 CCTCCAGAACAGGTGCCTAT 58.792 55.000 0.00 0.00 0.00 2.57
3263 3681 0.116342 TCCTCCAGAACAGGTGCCTA 59.884 55.000 0.00 0.00 32.20 3.93
3264 3682 0.768221 TTCCTCCAGAACAGGTGCCT 60.768 55.000 0.00 0.00 32.20 4.75
3265 3683 0.329596 ATTCCTCCAGAACAGGTGCC 59.670 55.000 0.00 0.00 37.29 5.01
3266 3684 1.457346 CATTCCTCCAGAACAGGTGC 58.543 55.000 0.00 0.00 37.29 5.01
3267 3685 1.457346 GCATTCCTCCAGAACAGGTG 58.543 55.000 0.00 0.00 37.29 4.00
3268 3686 0.329596 GGCATTCCTCCAGAACAGGT 59.670 55.000 0.00 0.00 37.29 4.00
3269 3687 0.622665 AGGCATTCCTCCAGAACAGG 59.377 55.000 0.00 0.00 38.72 4.00
3280 3698 2.484889 GTATCTGTTCGGAGGCATTCC 58.515 52.381 0.00 0.00 43.04 3.01
3281 3699 2.103263 AGGTATCTGTTCGGAGGCATTC 59.897 50.000 0.00 0.00 0.00 2.67
3282 3700 2.103263 GAGGTATCTGTTCGGAGGCATT 59.897 50.000 0.00 0.00 0.00 3.56
3283 3701 1.689273 GAGGTATCTGTTCGGAGGCAT 59.311 52.381 0.00 0.00 0.00 4.40
3284 3702 1.112113 GAGGTATCTGTTCGGAGGCA 58.888 55.000 0.00 0.00 0.00 4.75
3285 3703 1.404843 AGAGGTATCTGTTCGGAGGC 58.595 55.000 0.00 0.00 33.30 4.70
3286 3704 3.292460 AGAAGAGGTATCTGTTCGGAGG 58.708 50.000 7.20 0.00 44.92 4.30
3287 3705 4.202070 GGAAGAAGAGGTATCTGTTCGGAG 60.202 50.000 7.20 0.00 44.92 4.63
3288 3706 3.700038 GGAAGAAGAGGTATCTGTTCGGA 59.300 47.826 7.20 0.00 44.92 4.55
3289 3707 3.181474 GGGAAGAAGAGGTATCTGTTCGG 60.181 52.174 7.20 0.00 44.92 4.30
3290 3708 3.447586 TGGGAAGAAGAGGTATCTGTTCG 59.552 47.826 7.20 0.00 44.92 3.95
3291 3709 4.383226 GGTGGGAAGAAGAGGTATCTGTTC 60.383 50.000 4.72 4.72 41.85 3.18
3292 3710 3.519913 GGTGGGAAGAAGAGGTATCTGTT 59.480 47.826 0.00 0.00 35.37 3.16
3293 3711 3.108376 GGTGGGAAGAAGAGGTATCTGT 58.892 50.000 0.00 0.00 35.37 3.41
3294 3712 3.379452 AGGTGGGAAGAAGAGGTATCTG 58.621 50.000 0.00 0.00 35.37 2.90
3295 3713 3.786213 AGGTGGGAAGAAGAGGTATCT 57.214 47.619 0.00 0.00 37.39 1.98
3296 3714 5.012251 GGAATAGGTGGGAAGAAGAGGTATC 59.988 48.000 0.00 0.00 0.00 2.24
3297 3715 4.908481 GGAATAGGTGGGAAGAAGAGGTAT 59.092 45.833 0.00 0.00 0.00 2.73
3298 3716 4.265124 TGGAATAGGTGGGAAGAAGAGGTA 60.265 45.833 0.00 0.00 0.00 3.08
3299 3717 3.116174 GGAATAGGTGGGAAGAAGAGGT 58.884 50.000 0.00 0.00 0.00 3.85
3300 3718 3.115390 TGGAATAGGTGGGAAGAAGAGG 58.885 50.000 0.00 0.00 0.00 3.69
3301 3719 4.033709 TCTGGAATAGGTGGGAAGAAGAG 58.966 47.826 0.00 0.00 0.00 2.85
3302 3720 4.074799 TCTGGAATAGGTGGGAAGAAGA 57.925 45.455 0.00 0.00 0.00 2.87
3303 3721 4.164988 ACATCTGGAATAGGTGGGAAGAAG 59.835 45.833 0.00 0.00 42.07 2.85
3304 3722 4.111577 ACATCTGGAATAGGTGGGAAGAA 58.888 43.478 0.00 0.00 42.07 2.52
3305 3723 3.736094 ACATCTGGAATAGGTGGGAAGA 58.264 45.455 0.00 0.00 42.07 2.87
3306 3724 5.832539 ATACATCTGGAATAGGTGGGAAG 57.167 43.478 0.00 0.00 42.07 3.46
3331 3749 9.258629 TCCTGGTTTTCATTGATTCTCAAATAT 57.741 29.630 0.00 0.00 40.12 1.28
3332 3750 8.522830 GTCCTGGTTTTCATTGATTCTCAAATA 58.477 33.333 0.00 0.00 40.12 1.40
3333 3751 7.234166 AGTCCTGGTTTTCATTGATTCTCAAAT 59.766 33.333 0.00 0.00 40.12 2.32
3334 3752 6.550854 AGTCCTGGTTTTCATTGATTCTCAAA 59.449 34.615 0.00 0.00 40.12 2.69
3335 3753 6.016024 CAGTCCTGGTTTTCATTGATTCTCAA 60.016 38.462 0.00 0.00 41.09 3.02
3336 3754 5.474532 CAGTCCTGGTTTTCATTGATTCTCA 59.525 40.000 0.00 0.00 0.00 3.27
3337 3755 5.707298 TCAGTCCTGGTTTTCATTGATTCTC 59.293 40.000 0.00 0.00 0.00 2.87
3338 3756 5.634118 TCAGTCCTGGTTTTCATTGATTCT 58.366 37.500 0.00 0.00 0.00 2.40
3339 3757 5.964958 TCAGTCCTGGTTTTCATTGATTC 57.035 39.130 0.00 0.00 0.00 2.52
3340 3758 5.186409 CCATCAGTCCTGGTTTTCATTGATT 59.814 40.000 0.00 0.00 0.00 2.57
3341 3759 4.708421 CCATCAGTCCTGGTTTTCATTGAT 59.292 41.667 0.00 0.00 0.00 2.57
3342 3760 4.081406 CCATCAGTCCTGGTTTTCATTGA 58.919 43.478 0.00 0.00 0.00 2.57
3343 3761 3.828451 ACCATCAGTCCTGGTTTTCATTG 59.172 43.478 0.00 0.00 44.67 2.82
3344 3762 4.082125 GACCATCAGTCCTGGTTTTCATT 58.918 43.478 0.00 0.00 46.95 2.57
3345 3763 3.690460 GACCATCAGTCCTGGTTTTCAT 58.310 45.455 0.00 0.00 46.95 2.57
3346 3764 3.140325 GACCATCAGTCCTGGTTTTCA 57.860 47.619 0.00 0.00 46.95 2.69
3356 3774 2.100605 AAGCGAAAGGACCATCAGTC 57.899 50.000 0.00 0.00 45.51 3.51
3357 3775 2.224523 TGAAAGCGAAAGGACCATCAGT 60.225 45.455 0.00 0.00 0.00 3.41
3358 3776 2.426522 TGAAAGCGAAAGGACCATCAG 58.573 47.619 0.00 0.00 0.00 2.90
3359 3777 2.559698 TGAAAGCGAAAGGACCATCA 57.440 45.000 0.00 0.00 0.00 3.07
3360 3778 3.691609 AGATTGAAAGCGAAAGGACCATC 59.308 43.478 0.00 0.00 0.00 3.51
3361 3779 3.690460 AGATTGAAAGCGAAAGGACCAT 58.310 40.909 0.00 0.00 0.00 3.55
3362 3780 3.074412 GAGATTGAAAGCGAAAGGACCA 58.926 45.455 0.00 0.00 0.00 4.02
3363 3781 2.094417 CGAGATTGAAAGCGAAAGGACC 59.906 50.000 0.00 0.00 0.00 4.46
3364 3782 2.737252 ACGAGATTGAAAGCGAAAGGAC 59.263 45.455 0.00 0.00 0.00 3.85
3365 3783 3.040147 ACGAGATTGAAAGCGAAAGGA 57.960 42.857 0.00 0.00 0.00 3.36
3366 3784 3.813529 AACGAGATTGAAAGCGAAAGG 57.186 42.857 0.00 0.00 0.00 3.11
3367 3785 6.363473 AGTAAAACGAGATTGAAAGCGAAAG 58.637 36.000 0.00 0.00 0.00 2.62
3368 3786 6.202188 AGAGTAAAACGAGATTGAAAGCGAAA 59.798 34.615 0.00 0.00 0.00 3.46
3369 3787 5.694910 AGAGTAAAACGAGATTGAAAGCGAA 59.305 36.000 0.00 0.00 0.00 4.70
3370 3788 5.227908 AGAGTAAAACGAGATTGAAAGCGA 58.772 37.500 0.00 0.00 0.00 4.93
3371 3789 5.517037 AGAGTAAAACGAGATTGAAAGCG 57.483 39.130 0.00 0.00 0.00 4.68
3372 3790 7.740781 GTGTTAGAGTAAAACGAGATTGAAAGC 59.259 37.037 0.00 0.00 0.00 3.51
3384 3802 7.225397 GTGCTGATAACGTGTTAGAGTAAAAC 58.775 38.462 0.00 0.00 0.00 2.43
3385 3803 6.088483 CGTGCTGATAACGTGTTAGAGTAAAA 59.912 38.462 0.00 0.00 36.31 1.52
3386 3804 5.570206 CGTGCTGATAACGTGTTAGAGTAAA 59.430 40.000 0.00 0.00 36.31 2.01
3387 3805 5.090757 CGTGCTGATAACGTGTTAGAGTAA 58.909 41.667 0.00 0.00 36.31 2.24
3388 3806 4.655027 CGTGCTGATAACGTGTTAGAGTA 58.345 43.478 0.00 0.00 36.31 2.59
3389 3807 3.499048 CGTGCTGATAACGTGTTAGAGT 58.501 45.455 0.00 0.00 36.31 3.24
3390 3808 2.279136 GCGTGCTGATAACGTGTTAGAG 59.721 50.000 0.00 0.00 42.93 2.43
3391 3809 2.094906 AGCGTGCTGATAACGTGTTAGA 60.095 45.455 0.00 0.00 42.93 2.10
3392 3810 2.259618 AGCGTGCTGATAACGTGTTAG 58.740 47.619 0.00 0.00 42.93 2.34
3393 3811 2.094906 AGAGCGTGCTGATAACGTGTTA 60.095 45.455 0.00 0.00 42.93 2.41
3394 3812 1.068474 GAGCGTGCTGATAACGTGTT 58.932 50.000 0.00 0.00 42.93 3.32
3395 3813 0.243907 AGAGCGTGCTGATAACGTGT 59.756 50.000 0.00 0.00 42.93 4.49
3396 3814 1.350193 AAGAGCGTGCTGATAACGTG 58.650 50.000 0.00 0.00 42.93 4.49
3397 3815 2.094906 TGTAAGAGCGTGCTGATAACGT 60.095 45.455 0.00 0.00 42.93 3.99
3398 3816 2.526077 TGTAAGAGCGTGCTGATAACG 58.474 47.619 0.00 0.00 43.81 3.18
3399 3817 3.770666 TCTGTAAGAGCGTGCTGATAAC 58.229 45.455 0.00 0.00 38.67 1.89
3412 3830 4.524053 TCGTCCTATTGCTCTCTGTAAGA 58.476 43.478 0.00 0.00 43.69 2.10
3413 3831 4.336993 ACTCGTCCTATTGCTCTCTGTAAG 59.663 45.833 0.00 0.00 0.00 2.34
3414 3832 4.270834 ACTCGTCCTATTGCTCTCTGTAA 58.729 43.478 0.00 0.00 0.00 2.41
3415 3833 3.878103 GACTCGTCCTATTGCTCTCTGTA 59.122 47.826 0.00 0.00 0.00 2.74
3416 3834 2.685897 GACTCGTCCTATTGCTCTCTGT 59.314 50.000 0.00 0.00 0.00 3.41
3417 3835 2.286713 CGACTCGTCCTATTGCTCTCTG 60.287 54.545 0.00 0.00 0.00 3.35
3418 3836 1.944024 CGACTCGTCCTATTGCTCTCT 59.056 52.381 0.00 0.00 0.00 3.10
3419 3837 1.002251 CCGACTCGTCCTATTGCTCTC 60.002 57.143 0.00 0.00 0.00 3.20
3420 3838 1.025812 CCGACTCGTCCTATTGCTCT 58.974 55.000 0.00 0.00 0.00 4.09
3421 3839 1.002251 CTCCGACTCGTCCTATTGCTC 60.002 57.143 0.00 0.00 0.00 4.26
3422 3840 1.025812 CTCCGACTCGTCCTATTGCT 58.974 55.000 0.00 0.00 0.00 3.91
3423 3841 0.030908 CCTCCGACTCGTCCTATTGC 59.969 60.000 0.00 0.00 0.00 3.56
3424 3842 1.390565 ACCTCCGACTCGTCCTATTG 58.609 55.000 0.00 0.00 0.00 1.90
3425 3843 2.848691 CTACCTCCGACTCGTCCTATT 58.151 52.381 0.00 0.00 0.00 1.73
3426 3844 1.542987 GCTACCTCCGACTCGTCCTAT 60.543 57.143 0.00 0.00 0.00 2.57
3427 3845 0.179062 GCTACCTCCGACTCGTCCTA 60.179 60.000 0.00 0.00 0.00 2.94
3428 3846 1.451747 GCTACCTCCGACTCGTCCT 60.452 63.158 0.00 0.00 0.00 3.85
3429 3847 2.479750 GGCTACCTCCGACTCGTCC 61.480 68.421 0.00 0.00 0.00 4.79
3430 3848 2.479750 GGGCTACCTCCGACTCGTC 61.480 68.421 0.00 0.00 0.00 4.20
3431 3849 2.439883 GGGCTACCTCCGACTCGT 60.440 66.667 0.00 0.00 0.00 4.18
3438 3856 3.942439 GATGGCCGGGCTACCTCC 61.942 72.222 29.87 7.37 33.28 4.30
3439 3857 2.456287 GATGATGGCCGGGCTACCTC 62.456 65.000 29.87 19.18 33.28 3.85
3440 3858 2.448542 ATGATGGCCGGGCTACCT 60.449 61.111 29.87 12.65 33.28 3.08
3441 3859 2.032681 GATGATGGCCGGGCTACC 59.967 66.667 29.87 17.49 0.00 3.18
3442 3860 2.357517 CGATGATGGCCGGGCTAC 60.358 66.667 29.87 21.67 0.00 3.58
3443 3861 3.625897 CCGATGATGGCCGGGCTA 61.626 66.667 29.87 14.40 41.89 3.93
3451 3869 1.006102 GTCCTACCGCCGATGATGG 60.006 63.158 0.00 0.00 0.00 3.51
3452 3870 1.371758 CGTCCTACCGCCGATGATG 60.372 63.158 0.00 0.00 0.00 3.07
3453 3871 1.516365 CTCGTCCTACCGCCGATGAT 61.516 60.000 0.00 0.00 0.00 2.45
3454 3872 2.124612 TCGTCCTACCGCCGATGA 60.125 61.111 0.00 0.00 0.00 2.92
3455 3873 2.331805 CTCGTCCTACCGCCGATG 59.668 66.667 0.00 0.00 0.00 3.84
3456 3874 2.905880 CCTCGTCCTACCGCCGAT 60.906 66.667 0.00 0.00 0.00 4.18
3460 3878 4.828296 TCCCCCTCGTCCTACCGC 62.828 72.222 0.00 0.00 0.00 5.68
3461 3879 2.518825 CTCCCCCTCGTCCTACCG 60.519 72.222 0.00 0.00 0.00 4.02
3462 3880 2.123382 CCTCCCCCTCGTCCTACC 60.123 72.222 0.00 0.00 0.00 3.18
3463 3881 2.838693 GCCTCCCCCTCGTCCTAC 60.839 72.222 0.00 0.00 0.00 3.18
3464 3882 3.352748 TGCCTCCCCCTCGTCCTA 61.353 66.667 0.00 0.00 0.00 2.94
3465 3883 4.787280 CTGCCTCCCCCTCGTCCT 62.787 72.222 0.00 0.00 0.00 3.85
3486 3904 3.110178 GAGTTCGACCGTTGGCCG 61.110 66.667 0.00 0.00 0.00 6.13
3487 3905 2.741211 GGAGTTCGACCGTTGGCC 60.741 66.667 0.00 0.00 0.00 5.36
3488 3906 2.027625 CTGGAGTTCGACCGTTGGC 61.028 63.158 0.00 0.00 0.00 4.52
3489 3907 0.666577 GTCTGGAGTTCGACCGTTGG 60.667 60.000 0.00 0.00 0.00 3.77
3490 3908 0.314302 AGTCTGGAGTTCGACCGTTG 59.686 55.000 0.00 0.00 0.00 4.10
3491 3909 0.314302 CAGTCTGGAGTTCGACCGTT 59.686 55.000 0.00 0.00 0.00 4.44
3492 3910 1.524863 CCAGTCTGGAGTTCGACCGT 61.525 60.000 14.26 0.00 40.96 4.83
3493 3911 1.213013 CCAGTCTGGAGTTCGACCG 59.787 63.158 14.26 0.00 40.96 4.79
3494 3912 2.654802 TCCAGTCTGGAGTTCGACC 58.345 57.895 18.15 0.00 42.67 4.79
3502 3920 2.583441 CGCTTGGGTCCAGTCTGGA 61.583 63.158 18.15 18.15 45.98 3.86
3503 3921 2.046892 CGCTTGGGTCCAGTCTGG 60.047 66.667 13.21 13.21 39.43 3.86
3504 3922 2.046892 CCGCTTGGGTCCAGTCTG 60.047 66.667 0.00 0.00 0.00 3.51
3505 3923 4.021925 GCCGCTTGGGTCCAGTCT 62.022 66.667 0.00 0.00 38.44 3.24
3547 3965 3.741476 CCCCTTGCGCTGTTCAGC 61.741 66.667 9.73 13.97 0.00 4.26
3548 3966 2.032528 TCCCCTTGCGCTGTTCAG 59.967 61.111 9.73 0.00 0.00 3.02
3549 3967 2.281484 GTCCCCTTGCGCTGTTCA 60.281 61.111 9.73 0.00 0.00 3.18
3550 3968 2.281484 TGTCCCCTTGCGCTGTTC 60.281 61.111 9.73 0.00 0.00 3.18
3551 3969 2.594592 GTGTCCCCTTGCGCTGTT 60.595 61.111 9.73 0.00 0.00 3.16
3552 3970 4.988598 CGTGTCCCCTTGCGCTGT 62.989 66.667 9.73 0.00 0.00 4.40
3581 3999 2.105128 GAGAGTCACGGCCGATGG 59.895 66.667 35.90 20.66 0.00 3.51
3582 4000 2.278206 CGAGAGTCACGGCCGATG 60.278 66.667 35.90 25.27 0.00 3.84
3583 4001 3.518998 CCGAGAGTCACGGCCGAT 61.519 66.667 35.90 13.97 43.74 4.18
3588 4006 2.751913 CGAGACCCGAGAGTCACGG 61.752 68.421 20.68 20.68 44.01 4.94
3589 4007 2.751913 CCGAGACCCGAGAGTCACG 61.752 68.421 2.68 2.68 46.25 4.35
3590 4008 3.053849 GCCGAGACCCGAGAGTCAC 62.054 68.421 0.00 0.00 41.76 3.67
3591 4009 2.750637 GCCGAGACCCGAGAGTCA 60.751 66.667 0.00 0.00 41.76 3.41
3592 4010 1.874345 TTTGCCGAGACCCGAGAGTC 61.874 60.000 0.00 0.00 41.76 3.36
3593 4011 1.469335 TTTTGCCGAGACCCGAGAGT 61.469 55.000 0.00 0.00 41.76 3.24
3594 4012 0.737715 CTTTTGCCGAGACCCGAGAG 60.738 60.000 0.00 0.00 41.76 3.20
3595 4013 1.292223 CTTTTGCCGAGACCCGAGA 59.708 57.895 0.00 0.00 41.76 4.04
3596 4014 2.391389 GCTTTTGCCGAGACCCGAG 61.391 63.158 0.00 0.00 40.15 4.63
3597 4015 2.358247 GCTTTTGCCGAGACCCGA 60.358 61.111 0.00 0.00 40.15 5.14
3598 4016 3.788766 CGCTTTTGCCGAGACCCG 61.789 66.667 0.00 0.00 43.93 5.28
3599 4017 4.103103 GCGCTTTTGCCGAGACCC 62.103 66.667 0.00 0.00 43.93 4.46
3600 4018 4.103103 GGCGCTTTTGCCGAGACC 62.103 66.667 7.64 0.00 46.75 3.85
3607 4025 4.476410 GCTACCGGGCGCTTTTGC 62.476 66.667 7.64 0.85 43.23 3.68
3630 4048 4.201679 TAGCCGTGCCCATCGTCG 62.202 66.667 0.00 0.00 0.00 5.12
3631 4049 2.585247 GTAGCCGTGCCCATCGTC 60.585 66.667 0.00 0.00 0.00 4.20
3632 4050 4.508128 CGTAGCCGTGCCCATCGT 62.508 66.667 0.00 0.00 0.00 3.73
3642 4060 0.591741 GTCGAATCCAGACGTAGCCG 60.592 60.000 0.00 0.00 40.83 5.52
3643 4061 0.248949 GGTCGAATCCAGACGTAGCC 60.249 60.000 0.00 0.00 39.38 3.93
3644 4062 0.248949 GGGTCGAATCCAGACGTAGC 60.249 60.000 0.00 0.00 39.38 3.58
3645 4063 0.384669 GGGGTCGAATCCAGACGTAG 59.615 60.000 8.14 0.00 39.38 3.51
3646 4064 1.378882 CGGGGTCGAATCCAGACGTA 61.379 60.000 8.14 0.00 39.38 3.57
3647 4065 2.707849 CGGGGTCGAATCCAGACGT 61.708 63.158 8.14 0.00 39.38 4.34
3648 4066 2.104331 CGGGGTCGAATCCAGACG 59.896 66.667 8.14 0.00 39.38 4.18
3649 4067 2.202892 GCGGGGTCGAATCCAGAC 60.203 66.667 9.69 0.00 39.00 3.51
3650 4068 2.363795 AGCGGGGTCGAATCCAGA 60.364 61.111 9.69 0.00 39.00 3.86
3651 4069 2.202932 CAGCGGGGTCGAATCCAG 60.203 66.667 8.14 5.34 39.00 3.86
3652 4070 3.781307 CCAGCGGGGTCGAATCCA 61.781 66.667 8.14 0.00 39.00 3.41
3653 4071 3.467226 TCCAGCGGGGTCGAATCC 61.467 66.667 2.05 0.00 39.00 3.01
3654 4072 2.202892 GTCCAGCGGGGTCGAATC 60.203 66.667 2.05 0.00 39.00 2.52
3655 4073 3.782443 GGTCCAGCGGGGTCGAAT 61.782 66.667 2.05 0.00 39.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.