Multiple sequence alignment - TraesCS3D01G461200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G461200 chr3D 100.000 3440 0 0 1 3440 565818736 565822175 0.000000e+00 6353.0
1 TraesCS3D01G461200 chr3D 96.262 107 3 1 3334 3440 603976371 603976476 1.270000e-39 174.0
2 TraesCS3D01G461200 chr3D 79.394 165 29 4 1021 1181 598161073 598161236 1.010000e-20 111.0
3 TraesCS3D01G461200 chr3D 83.621 116 17 2 1023 1137 598037283 598037397 1.310000e-19 108.0
4 TraesCS3D01G461200 chr3D 80.992 121 19 4 2075 2193 388312580 388312462 3.660000e-15 93.5
5 TraesCS3D01G461200 chr3A 94.524 1735 69 11 943 2662 700215964 700214241 0.000000e+00 2654.0
6 TraesCS3D01G461200 chr3A 86.727 663 66 12 2682 3333 700214126 700213475 0.000000e+00 717.0
7 TraesCS3D01G461200 chr3A 92.933 283 18 2 469 750 700216518 700216237 8.890000e-111 411.0
8 TraesCS3D01G461200 chr3A 91.065 291 15 2 198 477 703772979 703773269 1.940000e-102 383.0
9 TraesCS3D01G461200 chr3A 97.500 200 5 0 1 200 700216713 700216514 3.290000e-90 342.0
10 TraesCS3D01G461200 chr3A 80.606 165 27 4 1021 1181 728320820 728320983 4.660000e-24 122.0
11 TraesCS3D01G461200 chr3A 81.818 121 18 4 2075 2193 509250699 509250581 7.860000e-17 99.0
12 TraesCS3D01G461200 chr3A 95.349 43 1 1 2595 2637 67163543 67163584 2.220000e-07 67.6
13 TraesCS3D01G461200 chr3B 95.967 1562 61 1 943 2502 754229419 754227858 0.000000e+00 2534.0
14 TraesCS3D01G461200 chr3B 84.380 621 65 9 2723 3333 754227173 754226575 6.400000e-162 580.0
15 TraesCS3D01G461200 chr3B 84.466 618 64 9 2723 3330 754281904 754282499 6.400000e-162 580.0
16 TraesCS3D01G461200 chr3B 92.359 301 17 4 469 763 754229976 754229676 1.140000e-114 424.0
17 TraesCS3D01G461200 chr3B 95.567 203 6 1 1 200 754230174 754229972 4.280000e-84 322.0
18 TraesCS3D01G461200 chr3B 83.621 116 19 0 1021 1136 805255604 805255719 3.630000e-20 110.0
19 TraesCS3D01G461200 chr2B 81.059 1473 226 32 1005 2440 151102907 151104363 0.000000e+00 1125.0
20 TraesCS3D01G461200 chr2D 81.101 1471 215 36 1005 2440 99660782 99659340 0.000000e+00 1118.0
21 TraesCS3D01G461200 chr2D 93.913 115 5 2 3326 3440 508094883 508094995 4.560000e-39 172.0
22 TraesCS3D01G461200 chr2D 83.562 73 8 3 694 763 39404770 39404699 7.970000e-07 65.8
23 TraesCS3D01G461200 chr1D 80.707 622 88 17 2722 3333 99816131 99815532 4.050000e-124 455.0
24 TraesCS3D01G461200 chr1D 91.216 296 15 3 198 482 349468689 349468394 3.220000e-105 392.0
25 TraesCS3D01G461200 chr1D 96.296 108 3 1 3333 3440 319517716 319517610 3.530000e-40 176.0
26 TraesCS3D01G461200 chr1D 94.118 34 2 0 2595 2628 348064385 348064352 6.000000e-03 52.8
27 TraesCS3D01G461200 chr4B 91.930 285 11 3 196 468 4525791 4526075 4.160000e-104 388.0
28 TraesCS3D01G461200 chr4B 75.258 291 53 17 1930 2215 604140242 604140518 1.680000e-23 121.0
29 TraesCS3D01G461200 chr4B 92.683 41 3 0 435 475 672050862 672050902 3.710000e-05 60.2
30 TraesCS3D01G461200 chr5B 95.833 240 9 1 196 434 153901370 153901609 1.500000e-103 387.0
31 TraesCS3D01G461200 chr4A 91.873 283 12 2 197 468 548783068 548783350 5.390000e-103 385.0
32 TraesCS3D01G461200 chr4A 84.000 75 9 2 687 758 261914152 261914226 6.160000e-08 69.4
33 TraesCS3D01G461200 chr6A 91.429 280 21 2 197 473 922401 922122 6.970000e-102 381.0
34 TraesCS3D01G461200 chr6A 78.472 144 31 0 2081 2224 8867988 8867845 1.020000e-15 95.3
35 TraesCS3D01G461200 chr7B 94.672 244 12 1 192 434 176356985 176357228 9.010000e-101 377.0
36 TraesCS3D01G461200 chr7B 90.074 272 25 2 195 465 1475550 1475820 5.460000e-93 351.0
37 TraesCS3D01G461200 chr7B 88.889 45 3 1 2595 2639 246002929 246002887 2.000000e-03 54.7
38 TraesCS3D01G461200 chr1B 95.378 238 10 1 198 434 549747711 549747948 9.010000e-101 377.0
39 TraesCS3D01G461200 chr1B 89.844 128 9 3 3313 3440 38218597 38218474 9.880000e-36 161.0
40 TraesCS3D01G461200 chr1B 89.831 59 6 0 690 748 415871330 415871272 3.680000e-10 76.8
41 TraesCS3D01G461200 chr4D 93.548 124 4 4 3318 3440 306374169 306374289 7.580000e-42 182.0
42 TraesCS3D01G461200 chr4D 80.420 143 24 4 2075 2215 477913012 477913152 4.700000e-19 106.0
43 TraesCS3D01G461200 chr4D 83.117 77 10 2 690 763 46617350 46617274 2.220000e-07 67.6
44 TraesCS3D01G461200 chr5D 96.296 108 4 0 3333 3440 118066406 118066513 9.810000e-41 178.0
45 TraesCS3D01G461200 chr5D 84.247 146 17 6 1023 1165 34051855 34051713 1.660000e-28 137.0
46 TraesCS3D01G461200 chr5D 82.192 146 20 6 1023 1165 34061347 34061205 1.680000e-23 121.0
47 TraesCS3D01G461200 chr6B 95.495 111 4 1 3330 3440 129298871 129298762 3.530000e-40 176.0
48 TraesCS3D01G461200 chrUn 94.595 111 6 0 3330 3440 121738420 121738530 4.560000e-39 172.0
49 TraesCS3D01G461200 chr5A 91.667 120 9 1 3320 3438 224476906 224477025 7.640000e-37 165.0
50 TraesCS3D01G461200 chr5A 80.667 150 22 7 1023 1169 22723977 22724122 3.630000e-20 110.0
51 TraesCS3D01G461200 chr5A 83.117 77 10 2 690 763 493816249 493816173 2.220000e-07 67.6
52 TraesCS3D01G461200 chr5A 83.117 77 10 2 687 760 566366980 566367056 2.220000e-07 67.6
53 TraesCS3D01G461200 chr1A 81.707 82 11 3 683 760 153594541 153594622 7.970000e-07 65.8
54 TraesCS3D01G461200 chr1A 100.000 29 0 0 2594 2622 8320125 8320153 2.000000e-03 54.7
55 TraesCS3D01G461200 chr7D 88.889 45 3 1 2595 2639 265697904 265697862 2.000000e-03 54.7
56 TraesCS3D01G461200 chr6D 87.500 48 4 1 2595 2642 469794088 469794043 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G461200 chr3D 565818736 565822175 3439 False 6353 6353 100.00000 1 3440 1 chr3D.!!$F1 3439
1 TraesCS3D01G461200 chr3A 700213475 700216713 3238 True 1031 2654 92.92100 1 3333 4 chr3A.!!$R2 3332
2 TraesCS3D01G461200 chr3B 754226575 754230174 3599 True 965 2534 92.06825 1 3333 4 chr3B.!!$R1 3332
3 TraesCS3D01G461200 chr3B 754281904 754282499 595 False 580 580 84.46600 2723 3330 1 chr3B.!!$F1 607
4 TraesCS3D01G461200 chr2B 151102907 151104363 1456 False 1125 1125 81.05900 1005 2440 1 chr2B.!!$F1 1435
5 TraesCS3D01G461200 chr2D 99659340 99660782 1442 True 1118 1118 81.10100 1005 2440 1 chr2D.!!$R2 1435
6 TraesCS3D01G461200 chr1D 99815532 99816131 599 True 455 455 80.70700 2722 3333 1 chr1D.!!$R1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 790 0.179018 AAGGCCCGCTACATCAATCC 60.179 55.0 0.0 0.0 0.0 3.01 F
856 866 0.249114 GCCTTGCGAGCTACTCTACC 60.249 60.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2393 2559 0.037326 CTTGTCTACCGCCAGCTGAA 60.037 55.0 17.39 0.0 0.00 3.02 R
2746 3468 0.697658 TGTCCTGCATGACCCATTGA 59.302 50.0 18.00 0.0 34.25 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.607198 GGTTTCCAATCCTTAATCTCATCCAA 59.393 38.462 0.00 0.00 0.00 3.53
141 145 1.372872 CAGCACATCACCGTCGACA 60.373 57.895 17.16 0.00 0.00 4.35
210 214 1.751437 GGCTACTTAGGCCCTGTTTG 58.249 55.000 0.00 0.00 43.49 2.93
211 215 1.682087 GGCTACTTAGGCCCTGTTTGG 60.682 57.143 0.00 0.00 43.49 3.28
212 216 1.004394 GCTACTTAGGCCCTGTTTGGT 59.996 52.381 0.00 0.00 0.00 3.67
213 217 2.554564 GCTACTTAGGCCCTGTTTGGTT 60.555 50.000 0.00 0.00 0.00 3.67
214 218 2.287977 ACTTAGGCCCTGTTTGGTTC 57.712 50.000 0.00 0.00 0.00 3.62
215 219 1.497286 ACTTAGGCCCTGTTTGGTTCA 59.503 47.619 0.00 0.00 0.00 3.18
216 220 2.110011 ACTTAGGCCCTGTTTGGTTCAT 59.890 45.455 0.00 0.00 0.00 2.57
217 221 3.332485 ACTTAGGCCCTGTTTGGTTCATA 59.668 43.478 0.00 0.00 0.00 2.15
218 222 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
219 223 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
220 224 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
221 225 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
222 226 3.421844 GCCCTGTTTGGTTCATAAGTCT 58.578 45.455 0.00 0.00 0.00 3.24
223 227 3.826729 GCCCTGTTTGGTTCATAAGTCTT 59.173 43.478 0.00 0.00 0.00 3.01
224 228 5.007682 GCCCTGTTTGGTTCATAAGTCTTA 58.992 41.667 0.00 0.00 0.00 2.10
225 229 5.123979 GCCCTGTTTGGTTCATAAGTCTTAG 59.876 44.000 0.00 0.00 0.00 2.18
226 230 5.648092 CCCTGTTTGGTTCATAAGTCTTAGG 59.352 44.000 0.00 0.00 0.00 2.69
227 231 6.472887 CCTGTTTGGTTCATAAGTCTTAGGA 58.527 40.000 2.85 2.85 0.00 2.94
228 232 6.371825 CCTGTTTGGTTCATAAGTCTTAGGAC 59.628 42.308 6.47 0.00 42.41 3.85
256 260 6.956102 TTTAGTCCCAACTTATAAGTCCCA 57.044 37.500 18.28 1.06 38.57 4.37
257 261 6.956102 TTAGTCCCAACTTATAAGTCCCAA 57.044 37.500 18.28 3.05 38.57 4.12
258 262 5.437191 AGTCCCAACTTATAAGTCCCAAG 57.563 43.478 18.28 6.66 38.57 3.61
259 263 4.850386 AGTCCCAACTTATAAGTCCCAAGT 59.150 41.667 18.28 5.74 38.57 3.16
260 264 5.045797 AGTCCCAACTTATAAGTCCCAAGTC 60.046 44.000 18.28 6.78 38.57 3.01
261 265 4.226620 TCCCAACTTATAAGTCCCAAGTCC 59.773 45.833 18.28 0.00 38.57 3.85
262 266 4.524053 CCAACTTATAAGTCCCAAGTCCC 58.476 47.826 18.28 0.00 38.57 4.46
263 267 4.227527 CCAACTTATAAGTCCCAAGTCCCT 59.772 45.833 18.28 0.00 38.57 4.20
264 268 5.427481 CCAACTTATAAGTCCCAAGTCCCTA 59.573 44.000 18.28 0.00 38.57 3.53
265 269 6.069847 CCAACTTATAAGTCCCAAGTCCCTAA 60.070 42.308 18.28 0.00 38.57 2.69
266 270 7.399634 CAACTTATAAGTCCCAAGTCCCTAAA 58.600 38.462 18.28 0.00 38.57 1.85
267 271 7.578458 ACTTATAAGTCCCAAGTCCCTAAAA 57.422 36.000 12.50 0.00 32.86 1.52
268 272 7.992295 ACTTATAAGTCCCAAGTCCCTAAAAA 58.008 34.615 12.50 0.00 32.86 1.94
269 273 8.107729 ACTTATAAGTCCCAAGTCCCTAAAAAG 58.892 37.037 12.50 0.00 32.86 2.27
270 274 4.808767 AAGTCCCAAGTCCCTAAAAAGT 57.191 40.909 0.00 0.00 0.00 2.66
271 275 4.368565 AGTCCCAAGTCCCTAAAAAGTC 57.631 45.455 0.00 0.00 0.00 3.01
272 276 3.074094 AGTCCCAAGTCCCTAAAAAGTCC 59.926 47.826 0.00 0.00 0.00 3.85
273 277 2.377531 TCCCAAGTCCCTAAAAAGTCCC 59.622 50.000 0.00 0.00 0.00 4.46
274 278 2.378886 CCCAAGTCCCTAAAAAGTCCCT 59.621 50.000 0.00 0.00 0.00 4.20
275 279 3.590182 CCCAAGTCCCTAAAAAGTCCCTA 59.410 47.826 0.00 0.00 0.00 3.53
276 280 4.567116 CCCAAGTCCCTAAAAAGTCCCTAC 60.567 50.000 0.00 0.00 0.00 3.18
277 281 4.567116 CCAAGTCCCTAAAAAGTCCCTACC 60.567 50.000 0.00 0.00 0.00 3.18
278 282 4.157668 AGTCCCTAAAAAGTCCCTACCT 57.842 45.455 0.00 0.00 0.00 3.08
279 283 3.844804 AGTCCCTAAAAAGTCCCTACCTG 59.155 47.826 0.00 0.00 0.00 4.00
280 284 3.586174 GTCCCTAAAAAGTCCCTACCTGT 59.414 47.826 0.00 0.00 0.00 4.00
281 285 4.042560 GTCCCTAAAAAGTCCCTACCTGTT 59.957 45.833 0.00 0.00 0.00 3.16
282 286 4.666431 TCCCTAAAAAGTCCCTACCTGTTT 59.334 41.667 0.00 0.00 0.00 2.83
283 287 4.765339 CCCTAAAAAGTCCCTACCTGTTTG 59.235 45.833 0.00 0.00 0.00 2.93
284 288 4.765339 CCTAAAAAGTCCCTACCTGTTTGG 59.235 45.833 0.00 0.00 42.93 3.28
294 298 3.036431 CCTGTTTGGTTCCTGGGAC 57.964 57.895 0.00 0.00 0.00 4.46
295 299 0.478507 CCTGTTTGGTTCCTGGGACT 59.521 55.000 4.84 0.00 0.00 3.85
296 300 1.133482 CCTGTTTGGTTCCTGGGACTT 60.133 52.381 4.84 0.00 0.00 3.01
297 301 2.107552 CCTGTTTGGTTCCTGGGACTTA 59.892 50.000 4.84 0.00 0.00 2.24
298 302 3.435890 CCTGTTTGGTTCCTGGGACTTAA 60.436 47.826 4.84 0.00 0.00 1.85
299 303 3.558033 TGTTTGGTTCCTGGGACTTAAC 58.442 45.455 4.84 9.92 0.00 2.01
300 304 3.053544 TGTTTGGTTCCTGGGACTTAACA 60.054 43.478 16.45 16.45 0.00 2.41
301 305 4.149598 GTTTGGTTCCTGGGACTTAACAT 58.850 43.478 4.84 0.00 0.00 2.71
302 306 3.433306 TGGTTCCTGGGACTTAACATG 57.567 47.619 4.84 0.00 0.00 3.21
303 307 2.983192 TGGTTCCTGGGACTTAACATGA 59.017 45.455 4.84 0.00 0.00 3.07
304 308 3.396276 TGGTTCCTGGGACTTAACATGAA 59.604 43.478 4.84 0.00 0.00 2.57
305 309 3.756963 GGTTCCTGGGACTTAACATGAAC 59.243 47.826 4.84 0.00 39.75 3.18
306 310 4.506802 GGTTCCTGGGACTTAACATGAACT 60.507 45.833 4.84 0.00 40.10 3.01
307 311 5.280317 GGTTCCTGGGACTTAACATGAACTA 60.280 44.000 4.84 0.00 40.10 2.24
308 312 6.235664 GTTCCTGGGACTTAACATGAACTAA 58.764 40.000 0.00 0.00 38.42 2.24
309 313 6.442541 TCCTGGGACTTAACATGAACTAAA 57.557 37.500 0.00 0.00 0.00 1.85
310 314 6.843752 TCCTGGGACTTAACATGAACTAAAA 58.156 36.000 0.00 0.00 0.00 1.52
311 315 6.940298 TCCTGGGACTTAACATGAACTAAAAG 59.060 38.462 0.00 0.00 0.00 2.27
312 316 6.940298 CCTGGGACTTAACATGAACTAAAAGA 59.060 38.462 0.00 0.00 0.00 2.52
313 317 7.094762 CCTGGGACTTAACATGAACTAAAAGAC 60.095 40.741 0.00 0.00 0.00 3.01
314 318 6.713450 TGGGACTTAACATGAACTAAAAGACC 59.287 38.462 0.00 3.57 0.00 3.85
315 319 6.713450 GGGACTTAACATGAACTAAAAGACCA 59.287 38.462 0.00 0.00 32.69 4.02
316 320 7.393515 GGGACTTAACATGAACTAAAAGACCAT 59.606 37.037 0.00 0.00 32.69 3.55
317 321 9.444600 GGACTTAACATGAACTAAAAGACCATA 57.555 33.333 0.00 0.00 31.80 2.74
335 339 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
344 348 7.852550 ACAACTATAAGTCCCTATAAGTCCC 57.147 40.000 0.00 0.00 0.00 4.46
345 349 7.602868 ACAACTATAAGTCCCTATAAGTCCCT 58.397 38.462 0.00 0.00 0.00 4.20
346 350 7.729431 ACAACTATAAGTCCCTATAAGTCCCTC 59.271 40.741 0.00 0.00 0.00 4.30
347 351 6.803017 ACTATAAGTCCCTATAAGTCCCTCC 58.197 44.000 0.00 0.00 0.00 4.30
348 352 5.970692 ATAAGTCCCTATAAGTCCCTCCT 57.029 43.478 0.00 0.00 0.00 3.69
349 353 4.645968 AAGTCCCTATAAGTCCCTCCTT 57.354 45.455 0.00 0.00 0.00 3.36
350 354 3.930035 AGTCCCTATAAGTCCCTCCTTG 58.070 50.000 0.00 0.00 0.00 3.61
351 355 3.536434 AGTCCCTATAAGTCCCTCCTTGA 59.464 47.826 0.00 0.00 0.00 3.02
352 356 3.898741 GTCCCTATAAGTCCCTCCTTGAG 59.101 52.174 0.00 0.00 0.00 3.02
353 357 3.797845 TCCCTATAAGTCCCTCCTTGAGA 59.202 47.826 0.00 0.00 0.00 3.27
354 358 4.234458 TCCCTATAAGTCCCTCCTTGAGAA 59.766 45.833 0.00 0.00 0.00 2.87
355 359 5.102609 TCCCTATAAGTCCCTCCTTGAGAAT 60.103 44.000 0.00 0.00 0.00 2.40
356 360 5.247337 CCCTATAAGTCCCTCCTTGAGAATC 59.753 48.000 0.00 0.00 0.00 2.52
357 361 6.081356 CCTATAAGTCCCTCCTTGAGAATCT 58.919 44.000 0.00 0.00 34.92 2.40
358 362 6.556874 CCTATAAGTCCCTCCTTGAGAATCTT 59.443 42.308 0.00 0.00 34.92 2.40
359 363 7.730784 CCTATAAGTCCCTCCTTGAGAATCTTA 59.269 40.741 0.00 0.00 34.92 2.10
360 364 9.320295 CTATAAGTCCCTCCTTGAGAATCTTAT 57.680 37.037 0.00 0.00 34.16 1.73
361 365 6.899892 AAGTCCCTCCTTGAGAATCTTATT 57.100 37.500 0.00 0.00 34.92 1.40
362 366 6.899892 AGTCCCTCCTTGAGAATCTTATTT 57.100 37.500 0.00 0.00 34.92 1.40
363 367 6.894682 AGTCCCTCCTTGAGAATCTTATTTC 58.105 40.000 0.00 0.00 34.92 2.17
364 368 6.445139 AGTCCCTCCTTGAGAATCTTATTTCA 59.555 38.462 0.00 0.00 34.92 2.69
365 369 7.128573 AGTCCCTCCTTGAGAATCTTATTTCAT 59.871 37.037 0.00 0.00 34.92 2.57
366 370 8.432805 GTCCCTCCTTGAGAATCTTATTTCATA 58.567 37.037 0.00 0.00 34.92 2.15
367 371 9.003145 TCCCTCCTTGAGAATCTTATTTCATAA 57.997 33.333 0.00 0.00 34.92 1.90
368 372 9.282569 CCCTCCTTGAGAATCTTATTTCATAAG 57.717 37.037 0.00 0.00 42.78 1.73
369 373 9.844257 CCTCCTTGAGAATCTTATTTCATAAGT 57.156 33.333 3.93 0.00 42.21 2.24
380 384 8.225603 TCTTATTTCATAAGTCTCAAATGCCC 57.774 34.615 3.93 0.00 42.21 5.36
381 385 7.833682 TCTTATTTCATAAGTCTCAAATGCCCA 59.166 33.333 3.93 0.00 42.21 5.36
382 386 8.537728 TTATTTCATAAGTCTCAAATGCCCAT 57.462 30.769 0.00 0.00 0.00 4.00
383 387 6.855763 TTTCATAAGTCTCAAATGCCCATT 57.144 33.333 0.00 0.00 0.00 3.16
384 388 6.855763 TTCATAAGTCTCAAATGCCCATTT 57.144 33.333 0.57 0.57 41.33 2.32
385 389 7.953005 TTCATAAGTCTCAAATGCCCATTTA 57.047 32.000 5.97 0.00 38.84 1.40
386 390 7.953005 TCATAAGTCTCAAATGCCCATTTAA 57.047 32.000 5.97 0.00 38.84 1.52
387 391 7.999679 TCATAAGTCTCAAATGCCCATTTAAG 58.000 34.615 5.97 2.18 38.84 1.85
388 392 7.615365 TCATAAGTCTCAAATGCCCATTTAAGT 59.385 33.333 5.97 0.00 38.84 2.24
389 393 5.904362 AGTCTCAAATGCCCATTTAAGTC 57.096 39.130 5.97 0.52 38.84 3.01
390 394 4.706962 AGTCTCAAATGCCCATTTAAGTCC 59.293 41.667 5.97 0.00 38.84 3.85
391 395 4.023291 TCTCAAATGCCCATTTAAGTCCC 58.977 43.478 5.97 0.00 38.84 4.46
392 396 4.026052 CTCAAATGCCCATTTAAGTCCCT 58.974 43.478 5.97 0.00 38.84 4.20
393 397 5.044476 TCTCAAATGCCCATTTAAGTCCCTA 60.044 40.000 5.97 0.00 38.84 3.53
394 398 5.776358 TCAAATGCCCATTTAAGTCCCTAT 58.224 37.500 5.97 0.00 38.84 2.57
395 399 6.916909 TCAAATGCCCATTTAAGTCCCTATA 58.083 36.000 5.97 0.00 38.84 1.31
396 400 7.358263 TCAAATGCCCATTTAAGTCCCTATAA 58.642 34.615 5.97 0.00 38.84 0.98
397 401 7.841729 TCAAATGCCCATTTAAGTCCCTATAAA 59.158 33.333 5.97 0.00 38.84 1.40
398 402 8.650490 CAAATGCCCATTTAAGTCCCTATAAAT 58.350 33.333 5.97 0.00 38.84 1.40
399 403 8.422577 AATGCCCATTTAAGTCCCTATAAATC 57.577 34.615 0.00 0.00 31.17 2.17
400 404 6.311735 TGCCCATTTAAGTCCCTATAAATCC 58.688 40.000 0.00 0.00 31.17 3.01
401 405 5.715279 GCCCATTTAAGTCCCTATAAATCCC 59.285 44.000 0.00 0.00 31.17 3.85
402 406 6.468798 GCCCATTTAAGTCCCTATAAATCCCT 60.469 42.308 0.00 0.00 31.17 4.20
403 407 7.175797 CCCATTTAAGTCCCTATAAATCCCTC 58.824 42.308 0.00 0.00 31.17 4.30
404 408 7.202279 CCCATTTAAGTCCCTATAAATCCCTCA 60.202 40.741 0.00 0.00 31.17 3.86
405 409 8.394040 CCATTTAAGTCCCTATAAATCCCTCAT 58.606 37.037 0.00 0.00 31.17 2.90
406 410 9.236006 CATTTAAGTCCCTATAAATCCCTCATG 57.764 37.037 0.00 0.00 31.17 3.07
407 411 7.947782 TTAAGTCCCTATAAATCCCTCATGT 57.052 36.000 0.00 0.00 0.00 3.21
408 412 6.848562 AAGTCCCTATAAATCCCTCATGTT 57.151 37.500 0.00 0.00 0.00 2.71
409 413 6.848562 AGTCCCTATAAATCCCTCATGTTT 57.151 37.500 0.00 0.00 0.00 2.83
410 414 6.605119 AGTCCCTATAAATCCCTCATGTTTG 58.395 40.000 0.00 0.00 0.00 2.93
411 415 5.770162 GTCCCTATAAATCCCTCATGTTTGG 59.230 44.000 0.00 0.00 0.00 3.28
412 416 5.435041 TCCCTATAAATCCCTCATGTTTGGT 59.565 40.000 0.00 0.00 0.00 3.67
413 417 6.068498 TCCCTATAAATCCCTCATGTTTGGTT 60.068 38.462 0.00 0.00 0.00 3.67
414 418 6.611236 CCCTATAAATCCCTCATGTTTGGTTT 59.389 38.462 0.00 0.00 0.00 3.27
415 419 7.782644 CCCTATAAATCCCTCATGTTTGGTTTA 59.217 37.037 0.00 0.00 0.00 2.01
416 420 8.850156 CCTATAAATCCCTCATGTTTGGTTTAG 58.150 37.037 0.00 0.00 0.00 1.85
417 421 9.627123 CTATAAATCCCTCATGTTTGGTTTAGA 57.373 33.333 0.00 0.00 0.00 2.10
419 423 6.780457 AATCCCTCATGTTTGGTTTAGATG 57.220 37.500 0.00 0.00 0.00 2.90
420 424 4.599041 TCCCTCATGTTTGGTTTAGATGG 58.401 43.478 0.00 0.00 0.00 3.51
421 425 3.701040 CCCTCATGTTTGGTTTAGATGGG 59.299 47.826 0.00 0.00 0.00 4.00
422 426 4.569653 CCCTCATGTTTGGTTTAGATGGGA 60.570 45.833 0.00 0.00 31.98 4.37
423 427 4.399303 CCTCATGTTTGGTTTAGATGGGAC 59.601 45.833 0.00 0.00 0.00 4.46
424 428 5.255397 TCATGTTTGGTTTAGATGGGACT 57.745 39.130 0.00 0.00 0.00 3.85
425 429 5.640147 TCATGTTTGGTTTAGATGGGACTT 58.360 37.500 0.00 0.00 0.00 3.01
426 430 6.785076 TCATGTTTGGTTTAGATGGGACTTA 58.215 36.000 0.00 0.00 0.00 2.24
427 431 7.410174 TCATGTTTGGTTTAGATGGGACTTAT 58.590 34.615 0.00 0.00 0.00 1.73
428 432 8.553153 TCATGTTTGGTTTAGATGGGACTTATA 58.447 33.333 0.00 0.00 0.00 0.98
429 433 8.840321 CATGTTTGGTTTAGATGGGACTTATAG 58.160 37.037 0.00 0.00 0.00 1.31
430 434 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
431 435 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
432 436 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
433 437 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
434 438 5.012871 GGTTTAGATGGGACTTATAGGGACC 59.987 48.000 0.00 0.00 0.00 4.46
435 439 3.277416 AGATGGGACTTATAGGGACCC 57.723 52.381 0.59 0.59 40.79 4.46
436 440 2.157989 AGATGGGACTTATAGGGACCCC 60.158 54.545 7.00 1.17 39.78 4.95
447 451 2.747083 AGGGACCCCTAAACCAGTAA 57.253 50.000 7.00 0.00 46.14 2.24
448 452 2.558974 AGGGACCCCTAAACCAGTAAG 58.441 52.381 7.00 0.00 46.14 2.34
449 453 2.157895 AGGGACCCCTAAACCAGTAAGT 60.158 50.000 7.00 0.00 46.14 2.24
450 454 2.238144 GGGACCCCTAAACCAGTAAGTC 59.762 54.545 0.00 0.00 0.00 3.01
451 455 2.238144 GGACCCCTAAACCAGTAAGTCC 59.762 54.545 0.00 0.00 36.12 3.85
452 456 2.238144 GACCCCTAAACCAGTAAGTCCC 59.762 54.545 0.00 0.00 0.00 4.46
453 457 2.157895 ACCCCTAAACCAGTAAGTCCCT 60.158 50.000 0.00 0.00 0.00 4.20
454 458 2.238898 CCCCTAAACCAGTAAGTCCCTG 59.761 54.545 0.00 0.00 0.00 4.45
455 459 3.178865 CCCTAAACCAGTAAGTCCCTGA 58.821 50.000 0.00 0.00 31.38 3.86
456 460 3.585732 CCCTAAACCAGTAAGTCCCTGAA 59.414 47.826 0.00 0.00 31.38 3.02
457 461 4.042435 CCCTAAACCAGTAAGTCCCTGAAA 59.958 45.833 0.00 0.00 31.38 2.69
458 462 5.457052 CCCTAAACCAGTAAGTCCCTGAAAA 60.457 44.000 0.00 0.00 31.38 2.29
459 463 5.472478 CCTAAACCAGTAAGTCCCTGAAAAC 59.528 44.000 0.00 0.00 31.38 2.43
460 464 4.513406 AACCAGTAAGTCCCTGAAAACA 57.487 40.909 0.00 0.00 31.38 2.83
461 465 4.513406 ACCAGTAAGTCCCTGAAAACAA 57.487 40.909 0.00 0.00 31.38 2.83
462 466 4.862371 ACCAGTAAGTCCCTGAAAACAAA 58.138 39.130 0.00 0.00 31.38 2.83
463 467 4.643334 ACCAGTAAGTCCCTGAAAACAAAC 59.357 41.667 0.00 0.00 31.38 2.93
464 468 4.642885 CCAGTAAGTCCCTGAAAACAAACA 59.357 41.667 0.00 0.00 31.38 2.83
465 469 5.449999 CCAGTAAGTCCCTGAAAACAAACAC 60.450 44.000 0.00 0.00 31.38 3.32
466 470 4.643334 AGTAAGTCCCTGAAAACAAACACC 59.357 41.667 0.00 0.00 0.00 4.16
467 471 2.384828 AGTCCCTGAAAACAAACACCC 58.615 47.619 0.00 0.00 0.00 4.61
468 472 2.104170 GTCCCTGAAAACAAACACCCA 58.896 47.619 0.00 0.00 0.00 4.51
469 473 2.104170 TCCCTGAAAACAAACACCCAC 58.896 47.619 0.00 0.00 0.00 4.61
470 474 2.107366 CCCTGAAAACAAACACCCACT 58.893 47.619 0.00 0.00 0.00 4.00
471 475 2.499693 CCCTGAAAACAAACACCCACTT 59.500 45.455 0.00 0.00 0.00 3.16
472 476 3.702045 CCCTGAAAACAAACACCCACTTA 59.298 43.478 0.00 0.00 0.00 2.24
488 492 4.889409 CCCACTTAATTATGTGCTGTCCAT 59.111 41.667 20.66 0.00 33.26 3.41
537 541 7.284074 TGACTTAATTACCCTGACAAGTCAAA 58.716 34.615 11.78 0.00 45.19 2.69
541 545 0.846693 ACCCTGACAAGTCAAAGCCT 59.153 50.000 4.29 0.00 39.39 4.58
551 555 2.704572 AGTCAAAGCCTGCTACATCAC 58.295 47.619 0.00 0.00 0.00 3.06
585 590 4.739716 CCAAGAAACGAAACCAATCTTGTG 59.260 41.667 11.52 2.07 43.32 3.33
596 601 7.308229 CGAAACCAATCTTGTGAAGAATCTTCT 60.308 37.037 21.89 0.00 41.63 2.85
679 686 6.253298 CGAAATTTCCGCATGTTGATGTAATT 59.747 34.615 12.54 0.00 31.50 1.40
767 777 9.623000 TTAGTTTGAAACTTATAGATAAGGCCC 57.377 33.333 16.49 3.35 43.07 5.80
768 778 6.766467 AGTTTGAAACTTATAGATAAGGCCCG 59.234 38.462 4.45 0.00 43.07 6.13
770 780 4.347000 TGAAACTTATAGATAAGGCCCGCT 59.653 41.667 12.71 0.00 43.07 5.52
771 781 5.541101 TGAAACTTATAGATAAGGCCCGCTA 59.459 40.000 12.71 0.00 43.07 4.26
775 785 5.127356 ACTTATAGATAAGGCCCGCTACATC 59.873 44.000 12.71 0.00 43.07 3.06
776 786 1.717032 AGATAAGGCCCGCTACATCA 58.283 50.000 0.00 0.00 0.00 3.07
778 788 2.639839 AGATAAGGCCCGCTACATCAAT 59.360 45.455 0.00 0.00 0.00 2.57
779 789 2.543777 TAAGGCCCGCTACATCAATC 57.456 50.000 0.00 0.00 0.00 2.67
780 790 0.179018 AAGGCCCGCTACATCAATCC 60.179 55.000 0.00 0.00 0.00 3.01
781 791 1.600916 GGCCCGCTACATCAATCCC 60.601 63.158 0.00 0.00 0.00 3.85
782 792 1.451936 GCCCGCTACATCAATCCCT 59.548 57.895 0.00 0.00 0.00 4.20
783 793 0.886490 GCCCGCTACATCAATCCCTG 60.886 60.000 0.00 0.00 0.00 4.45
784 794 0.469917 CCCGCTACATCAATCCCTGT 59.530 55.000 0.00 0.00 0.00 4.00
785 795 1.541233 CCCGCTACATCAATCCCTGTC 60.541 57.143 0.00 0.00 0.00 3.51
787 797 2.205074 CGCTACATCAATCCCTGTCAC 58.795 52.381 0.00 0.00 0.00 3.67
788 798 2.565841 GCTACATCAATCCCTGTCACC 58.434 52.381 0.00 0.00 0.00 4.02
792 802 2.291153 ACATCAATCCCTGTCACCCAAG 60.291 50.000 0.00 0.00 0.00 3.61
794 804 2.061848 TCAATCCCTGTCACCCAAGAA 58.938 47.619 0.00 0.00 0.00 2.52
795 805 2.445145 TCAATCCCTGTCACCCAAGAAA 59.555 45.455 0.00 0.00 0.00 2.52
796 806 2.558359 CAATCCCTGTCACCCAAGAAAC 59.442 50.000 0.00 0.00 0.00 2.78
797 807 0.476771 TCCCTGTCACCCAAGAAACC 59.523 55.000 0.00 0.00 0.00 3.27
798 808 0.539669 CCCTGTCACCCAAGAAACCC 60.540 60.000 0.00 0.00 0.00 4.11
800 810 1.410932 CCTGTCACCCAAGAAACCCAA 60.411 52.381 0.00 0.00 0.00 4.12
801 811 2.597455 CTGTCACCCAAGAAACCCAAT 58.403 47.619 0.00 0.00 0.00 3.16
802 812 2.558359 CTGTCACCCAAGAAACCCAATC 59.442 50.000 0.00 0.00 0.00 2.67
804 814 3.230976 GTCACCCAAGAAACCCAATCTT 58.769 45.455 0.00 0.00 37.62 2.40
835 845 9.658799 TTAAAGAATCTTCTAATGTCAGTCCAG 57.341 33.333 0.00 0.00 36.28 3.86
836 846 7.487822 AAGAATCTTCTAATGTCAGTCCAGA 57.512 36.000 0.00 0.00 36.28 3.86
837 847 7.111247 AGAATCTTCTAATGTCAGTCCAGAG 57.889 40.000 0.00 0.00 35.34 3.35
838 848 4.727507 TCTTCTAATGTCAGTCCAGAGC 57.272 45.455 0.00 0.00 0.00 4.09
839 849 3.449018 TCTTCTAATGTCAGTCCAGAGCC 59.551 47.826 0.00 0.00 0.00 4.70
841 851 3.445008 TCTAATGTCAGTCCAGAGCCTT 58.555 45.455 0.00 0.00 0.00 4.35
842 852 2.486472 AATGTCAGTCCAGAGCCTTG 57.514 50.000 0.00 0.00 0.00 3.61
845 855 1.908299 TCAGTCCAGAGCCTTGCGA 60.908 57.895 0.00 0.00 0.00 5.10
846 856 1.447489 CAGTCCAGAGCCTTGCGAG 60.447 63.158 0.00 0.00 0.00 5.03
847 857 2.817396 GTCCAGAGCCTTGCGAGC 60.817 66.667 0.00 0.00 0.00 5.03
848 858 2.999648 TCCAGAGCCTTGCGAGCT 61.000 61.111 0.00 0.00 45.23 4.09
849 859 1.682344 TCCAGAGCCTTGCGAGCTA 60.682 57.895 0.00 0.00 41.75 3.32
850 860 1.520342 CCAGAGCCTTGCGAGCTAC 60.520 63.158 0.00 0.00 41.75 3.58
852 862 0.527385 CAGAGCCTTGCGAGCTACTC 60.527 60.000 0.00 2.26 41.75 2.59
853 863 0.682855 AGAGCCTTGCGAGCTACTCT 60.683 55.000 11.62 11.62 41.75 3.24
855 865 0.741915 AGCCTTGCGAGCTACTCTAC 59.258 55.000 0.00 0.00 39.29 2.59
856 866 0.249114 GCCTTGCGAGCTACTCTACC 60.249 60.000 0.00 0.00 0.00 3.18
857 867 1.103803 CCTTGCGAGCTACTCTACCA 58.896 55.000 0.00 0.00 0.00 3.25
862 872 4.994907 TGCGAGCTACTCTACCATTTTA 57.005 40.909 0.00 0.00 0.00 1.52
863 873 4.933330 TGCGAGCTACTCTACCATTTTAG 58.067 43.478 0.00 0.00 0.00 1.85
864 874 4.401519 TGCGAGCTACTCTACCATTTTAGT 59.598 41.667 0.00 0.00 0.00 2.24
865 875 5.591472 TGCGAGCTACTCTACCATTTTAGTA 59.409 40.000 0.00 0.00 0.00 1.82
866 876 5.914074 GCGAGCTACTCTACCATTTTAGTAC 59.086 44.000 0.00 0.00 0.00 2.73
867 877 6.459298 GCGAGCTACTCTACCATTTTAGTACA 60.459 42.308 0.00 0.00 0.00 2.90
888 1005 3.923017 ACGAAATTTCCTGGAAGCTTG 57.077 42.857 2.10 4.98 0.00 4.01
889 1006 2.558359 ACGAAATTTCCTGGAAGCTTGG 59.442 45.455 2.10 10.29 0.00 3.61
901 1018 4.208632 GCTTGGTGCGCTGACTAT 57.791 55.556 9.73 0.00 0.00 2.12
902 1019 3.362581 GCTTGGTGCGCTGACTATA 57.637 52.632 9.73 0.00 0.00 1.31
914 1031 3.246226 CGCTGACTATAACATTCTGCACC 59.754 47.826 0.00 0.00 34.78 5.01
916 1033 4.034510 GCTGACTATAACATTCTGCACCAC 59.965 45.833 0.00 0.00 35.10 4.16
917 1034 5.159273 TGACTATAACATTCTGCACCACA 57.841 39.130 0.00 0.00 0.00 4.17
929 1046 3.541996 TGCACCACAGATACTGTATGG 57.458 47.619 4.79 4.39 43.43 2.74
930 1047 2.837591 TGCACCACAGATACTGTATGGT 59.162 45.455 4.79 5.06 43.43 3.55
934 1051 3.133003 ACCACAGATACTGTATGGTGAGC 59.867 47.826 21.59 3.31 43.43 4.26
935 1052 3.132824 CCACAGATACTGTATGGTGAGCA 59.867 47.826 21.59 0.00 43.43 4.26
936 1053 4.115516 CACAGATACTGTATGGTGAGCAC 58.884 47.826 17.73 0.00 43.43 4.40
937 1054 3.769300 ACAGATACTGTATGGTGAGCACA 59.231 43.478 4.79 0.00 43.46 4.57
938 1055 4.142071 ACAGATACTGTATGGTGAGCACAG 60.142 45.833 4.79 1.35 43.46 3.66
939 1056 3.386078 AGATACTGTATGGTGAGCACAGG 59.614 47.826 4.79 0.00 43.18 4.00
940 1057 1.644509 ACTGTATGGTGAGCACAGGA 58.355 50.000 7.10 0.00 43.18 3.86
941 1058 2.191400 ACTGTATGGTGAGCACAGGAT 58.809 47.619 7.10 0.00 43.18 3.24
980 1099 3.446516 ACTTAGTCTCTTACCGGCGAAAT 59.553 43.478 9.30 0.00 0.00 2.17
994 1113 1.203928 CGAAATACTCAGCTGCTCCG 58.796 55.000 9.47 1.67 0.00 4.63
999 1118 1.815817 TACTCAGCTGCTCCGCAACA 61.816 55.000 9.47 0.00 38.41 3.33
1017 1136 3.567579 AATGGCCAGGGGTCACGTG 62.568 63.158 13.05 9.94 41.42 4.49
1427 1568 2.401766 CCATGCTCCACGACAAGGC 61.402 63.158 0.00 0.00 0.00 4.35
2004 2170 3.532155 GGCCTCGTCATCGGCTCT 61.532 66.667 0.00 0.00 45.57 4.09
2012 2178 4.598894 CATCGGCTCTGGCTCCGG 62.599 72.222 0.00 0.00 45.31 5.14
2226 2392 2.125793 GCCAACGGGAGGTACGTC 60.126 66.667 7.03 7.03 44.83 4.34
2288 2454 2.692273 GAACGGGGCAAGGTTGAGGT 62.692 60.000 0.00 0.00 0.00 3.85
2310 2476 1.209275 CGATCGCGAGGTTCATGGAC 61.209 60.000 16.66 0.00 40.82 4.02
2543 2973 3.741245 AGACTGCTACTCCCTCACTAA 57.259 47.619 0.00 0.00 0.00 2.24
2545 2975 5.390087 AGACTGCTACTCCCTCACTAATA 57.610 43.478 0.00 0.00 0.00 0.98
2546 2976 5.767670 AGACTGCTACTCCCTCACTAATAA 58.232 41.667 0.00 0.00 0.00 1.40
2547 2977 6.377912 AGACTGCTACTCCCTCACTAATAAT 58.622 40.000 0.00 0.00 0.00 1.28
2548 2978 7.527796 AGACTGCTACTCCCTCACTAATAATA 58.472 38.462 0.00 0.00 0.00 0.98
2553 2983 8.421784 TGCTACTCCCTCACTAATAATACAAAG 58.578 37.037 0.00 0.00 0.00 2.77
2573 3003 8.103948 ACAAAGTTGAATCACTTATTCTGAGG 57.896 34.615 0.00 0.00 43.83 3.86
2574 3004 7.939039 ACAAAGTTGAATCACTTATTCTGAGGA 59.061 33.333 0.00 0.00 43.83 3.71
2575 3005 7.913674 AAGTTGAATCACTTATTCTGAGGAC 57.086 36.000 0.00 0.00 43.83 3.85
2578 3008 6.280855 TGAATCACTTATTCTGAGGACGAA 57.719 37.500 0.00 0.00 43.83 3.85
2583 3013 5.245301 TCACTTATTCTGAGGACGAAGGAAA 59.755 40.000 0.00 0.00 0.00 3.13
2584 3014 6.070767 TCACTTATTCTGAGGACGAAGGAAAT 60.071 38.462 0.00 0.00 0.00 2.17
2587 3017 7.928706 ACTTATTCTGAGGACGAAGGAAATATG 59.071 37.037 0.00 0.00 0.00 1.78
2588 3018 5.677319 TTCTGAGGACGAAGGAAATATGT 57.323 39.130 0.00 0.00 0.00 2.29
2589 3019 5.263968 TCTGAGGACGAAGGAAATATGTC 57.736 43.478 0.00 0.00 0.00 3.06
2590 3020 4.709886 TCTGAGGACGAAGGAAATATGTCA 59.290 41.667 0.00 0.00 0.00 3.58
2591 3021 4.755411 TGAGGACGAAGGAAATATGTCAC 58.245 43.478 0.00 0.00 0.00 3.67
2592 3022 3.782046 AGGACGAAGGAAATATGTCACG 58.218 45.455 0.00 0.67 0.00 4.35
2593 3023 2.864343 GGACGAAGGAAATATGTCACGG 59.136 50.000 9.81 0.00 0.00 4.94
2594 3024 3.518590 GACGAAGGAAATATGTCACGGT 58.481 45.455 9.81 0.00 0.00 4.83
2595 3025 4.440525 GGACGAAGGAAATATGTCACGGTA 60.441 45.833 9.81 0.00 0.00 4.02
2596 3026 4.679662 ACGAAGGAAATATGTCACGGTAG 58.320 43.478 9.81 0.00 0.00 3.18
2662 3290 1.457346 ACTGACTTGGCAAGCATAGC 58.543 50.000 26.45 11.55 0.00 2.97
2663 3291 1.271543 ACTGACTTGGCAAGCATAGCA 60.272 47.619 26.45 15.09 0.00 3.49
2665 3293 2.426024 CTGACTTGGCAAGCATAGCATT 59.574 45.455 26.45 4.73 0.00 3.56
2666 3294 2.827322 TGACTTGGCAAGCATAGCATTT 59.173 40.909 26.45 3.95 0.00 2.32
2667 3295 3.258872 TGACTTGGCAAGCATAGCATTTT 59.741 39.130 26.45 3.17 0.00 1.82
2668 3296 4.248058 GACTTGGCAAGCATAGCATTTTT 58.752 39.130 26.45 2.61 0.00 1.94
2746 3468 4.998051 AGAAGAAACTGGAGAGAGACTCT 58.002 43.478 4.14 4.14 44.28 3.24
2804 3526 1.925888 GAAGCCATCTCCACCCCAT 59.074 57.895 0.00 0.00 0.00 4.00
2838 3560 2.686915 CGACTACTCCTGAATTACCCGT 59.313 50.000 0.00 0.00 0.00 5.28
2869 3591 4.094476 CTCCACTACTAACCCCTCAAGAA 58.906 47.826 0.00 0.00 0.00 2.52
2879 3601 1.612726 CCCCTCAAGAACCTTGCTGAG 60.613 57.143 2.04 0.00 0.00 3.35
2880 3602 1.072965 CCCTCAAGAACCTTGCTGAGT 59.927 52.381 2.04 0.00 0.00 3.41
2881 3603 2.149578 CCTCAAGAACCTTGCTGAGTG 58.850 52.381 2.04 0.00 0.00 3.51
2882 3604 2.224378 CCTCAAGAACCTTGCTGAGTGA 60.224 50.000 2.04 0.00 0.00 3.41
2893 3615 1.599047 CTGAGTGATCAGCCCCGTT 59.401 57.895 0.00 0.00 0.00 4.44
2917 3639 0.468648 CCCATACCCTTCCCTCGTTC 59.531 60.000 0.00 0.00 0.00 3.95
2935 3657 0.182775 TCTCGATCCTCCGGATGACA 59.817 55.000 11.97 0.00 43.27 3.58
2956 3678 1.109920 GGGCTAGAGATGGAGACGCA 61.110 60.000 0.00 0.00 0.00 5.24
2967 3689 1.204704 TGGAGACGCATCGTTGAAGAT 59.795 47.619 0.00 0.00 41.37 2.40
2994 3716 4.022329 GTCATTCCGGTGTTTCCAGATTTT 60.022 41.667 0.00 0.00 35.57 1.82
3047 3769 1.269998 ACTTCTTGTTCTCGTCCCTCG 59.730 52.381 0.00 0.00 41.41 4.63
3048 3770 0.601558 TTCTTGTTCTCGTCCCTCGG 59.398 55.000 0.00 0.00 40.32 4.63
3058 3780 2.683933 TCCCTCGGCTCAGTTCCC 60.684 66.667 0.00 0.00 0.00 3.97
3059 3781 3.003173 CCCTCGGCTCAGTTCCCA 61.003 66.667 0.00 0.00 0.00 4.37
3122 3844 2.943033 CAAACTTCGGTCTTCCACTTGT 59.057 45.455 0.00 0.00 0.00 3.16
3133 3855 3.195610 TCTTCCACTTGTGATAGCGATGT 59.804 43.478 1.89 0.00 0.00 3.06
3162 3884 0.318441 TCTCCTTCGCCAAGACACAG 59.682 55.000 0.00 0.00 0.00 3.66
3179 3911 6.038985 AGACACAGTTGATCATTATGTCTCG 58.961 40.000 19.13 7.63 40.95 4.04
3207 3939 1.971357 GGTCACAGAACAGGAAGGAGA 59.029 52.381 0.00 0.00 0.00 3.71
3240 3972 1.517257 CCACGTCGAGCAAGCCTAG 60.517 63.158 0.00 0.00 0.00 3.02
3249 3994 1.144936 GCAAGCCTAGCGGATGTCT 59.855 57.895 0.00 0.00 0.00 3.41
3272 4017 0.543277 AGCGATTCTTGATGGCCAGA 59.457 50.000 13.05 0.00 40.02 3.86
3276 4021 2.096496 CGATTCTTGATGGCCAGACAAC 59.904 50.000 19.71 11.70 0.00 3.32
3292 4037 3.309954 AGACAACAAAAGAAGCGACACTC 59.690 43.478 0.00 0.00 0.00 3.51
3320 4065 5.817816 CGGAGCTTTAGACTTCCATGTAAAT 59.182 40.000 0.00 0.00 0.00 1.40
3322 4067 6.823689 GGAGCTTTAGACTTCCATGTAAATGA 59.176 38.462 0.00 0.00 0.00 2.57
3333 4078 7.669722 ACTTCCATGTAAATGATGTTGTAGGTT 59.330 33.333 0.00 0.00 0.00 3.50
3334 4079 8.415950 TTCCATGTAAATGATGTTGTAGGTTT 57.584 30.769 0.00 0.00 0.00 3.27
3335 4080 8.415950 TCCATGTAAATGATGTTGTAGGTTTT 57.584 30.769 0.00 0.00 0.00 2.43
3336 4081 8.865090 TCCATGTAAATGATGTTGTAGGTTTTT 58.135 29.630 0.00 0.00 0.00 1.94
3337 4082 9.139174 CCATGTAAATGATGTTGTAGGTTTTTC 57.861 33.333 0.00 0.00 0.00 2.29
3338 4083 9.912634 CATGTAAATGATGTTGTAGGTTTTTCT 57.087 29.630 0.00 0.00 0.00 2.52
3357 4102 5.500546 TTCTTTAGAAAAGGAGGAGGACC 57.499 43.478 0.00 0.00 0.00 4.46
3358 4103 3.844804 TCTTTAGAAAAGGAGGAGGACCC 59.155 47.826 0.00 0.00 36.73 4.46
3359 4104 2.265526 TAGAAAAGGAGGAGGACCCC 57.734 55.000 0.00 0.00 36.73 4.95
3360 4105 0.550393 AGAAAAGGAGGAGGACCCCC 60.550 60.000 0.00 0.00 36.73 5.40
3361 4106 1.911702 GAAAAGGAGGAGGACCCCCG 61.912 65.000 0.00 0.00 37.58 5.73
3362 4107 3.945064 AAAGGAGGAGGACCCCCGG 62.945 68.421 0.00 0.00 37.58 5.73
3374 4119 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
3375 4120 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
3376 4121 3.473647 CCGGCCTCTGCATCTGGA 61.474 66.667 0.00 0.00 40.13 3.86
3377 4122 2.202987 CGGCCTCTGCATCTGGAC 60.203 66.667 0.00 0.35 40.13 4.02
3378 4123 2.202987 GGCCTCTGCATCTGGACG 60.203 66.667 0.00 0.00 40.13 4.79
3379 4124 2.725312 GGCCTCTGCATCTGGACGA 61.725 63.158 0.00 0.00 40.13 4.20
3380 4125 1.445095 GCCTCTGCATCTGGACGAT 59.555 57.895 0.00 0.00 37.47 3.73
3388 4133 2.145958 CATCTGGACGATGCAGGTAG 57.854 55.000 0.00 0.00 42.75 3.18
3389 4134 0.390860 ATCTGGACGATGCAGGTAGC 59.609 55.000 0.00 0.00 45.96 3.58
3390 4135 1.227380 CTGGACGATGCAGGTAGCC 60.227 63.158 0.00 0.00 44.83 3.93
3391 4136 1.960040 CTGGACGATGCAGGTAGCCA 61.960 60.000 0.00 0.00 44.83 4.75
3392 4137 1.521681 GGACGATGCAGGTAGCCAC 60.522 63.158 0.00 0.00 44.83 5.01
3393 4138 1.517832 GACGATGCAGGTAGCCACT 59.482 57.895 0.00 0.00 44.83 4.00
3394 4139 0.108138 GACGATGCAGGTAGCCACTT 60.108 55.000 0.00 0.00 44.83 3.16
3395 4140 0.324943 ACGATGCAGGTAGCCACTTT 59.675 50.000 0.00 0.00 44.83 2.66
3396 4141 1.553248 ACGATGCAGGTAGCCACTTTA 59.447 47.619 0.00 0.00 44.83 1.85
3397 4142 2.170607 ACGATGCAGGTAGCCACTTTAT 59.829 45.455 0.00 0.00 44.83 1.40
3398 4143 3.206150 CGATGCAGGTAGCCACTTTATT 58.794 45.455 0.00 0.00 44.83 1.40
3399 4144 4.141801 ACGATGCAGGTAGCCACTTTATTA 60.142 41.667 0.00 0.00 44.83 0.98
3400 4145 4.814234 CGATGCAGGTAGCCACTTTATTAA 59.186 41.667 0.00 0.00 44.83 1.40
3401 4146 5.470098 CGATGCAGGTAGCCACTTTATTAAT 59.530 40.000 0.00 0.00 44.83 1.40
3402 4147 6.017109 CGATGCAGGTAGCCACTTTATTAATT 60.017 38.462 0.00 0.00 44.83 1.40
3403 4148 7.172532 CGATGCAGGTAGCCACTTTATTAATTA 59.827 37.037 0.00 0.00 44.83 1.40
3404 4149 8.940397 ATGCAGGTAGCCACTTTATTAATTAT 57.060 30.769 0.00 0.00 44.83 1.28
3405 4150 8.760980 TGCAGGTAGCCACTTTATTAATTATT 57.239 30.769 0.00 0.00 44.83 1.40
3406 4151 8.846211 TGCAGGTAGCCACTTTATTAATTATTC 58.154 33.333 0.00 0.00 44.83 1.75
3407 4152 8.846211 GCAGGTAGCCACTTTATTAATTATTCA 58.154 33.333 0.00 0.00 37.23 2.57
3409 4154 9.914834 AGGTAGCCACTTTATTAATTATTCACA 57.085 29.630 0.00 0.00 0.00 3.58
3410 4155 9.946165 GGTAGCCACTTTATTAATTATTCACAC 57.054 33.333 0.00 0.00 0.00 3.82
3427 4172 6.993786 TTCACACAAGACATTACAAAGTCA 57.006 33.333 0.00 0.00 37.23 3.41
3428 4173 7.566760 TTCACACAAGACATTACAAAGTCAT 57.433 32.000 0.00 0.00 37.23 3.06
3429 4174 8.669946 TTCACACAAGACATTACAAAGTCATA 57.330 30.769 0.00 0.00 37.23 2.15
3430 4175 8.083462 TCACACAAGACATTACAAAGTCATAC 57.917 34.615 0.00 0.00 37.23 2.39
3431 4176 7.713073 TCACACAAGACATTACAAAGTCATACA 59.287 33.333 0.00 0.00 37.23 2.29
3432 4177 8.341903 CACACAAGACATTACAAAGTCATACAA 58.658 33.333 0.00 0.00 37.23 2.41
3433 4178 8.342634 ACACAAGACATTACAAAGTCATACAAC 58.657 33.333 0.00 0.00 37.23 3.32
3434 4179 8.341903 CACAAGACATTACAAAGTCATACAACA 58.658 33.333 0.00 0.00 37.23 3.33
3435 4180 8.559536 ACAAGACATTACAAAGTCATACAACAG 58.440 33.333 0.00 0.00 37.23 3.16
3436 4181 8.559536 CAAGACATTACAAAGTCATACAACAGT 58.440 33.333 0.00 0.00 37.23 3.55
3437 4182 9.772973 AAGACATTACAAAGTCATACAACAGTA 57.227 29.630 0.00 0.00 37.23 2.74
3438 4183 9.772973 AGACATTACAAAGTCATACAACAGTAA 57.227 29.630 0.00 0.00 37.23 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.663209 TTTTGGATGAGATTAAGGATTGGAAA 57.337 30.769 0.00 0.00 0.00 3.13
30 31 0.607489 AGTGCTCGCAGCCAAGATTT 60.607 50.000 5.82 0.00 41.51 2.17
141 145 3.189606 TGATAAGGTGGACAGGGTGATT 58.810 45.455 0.00 0.00 0.00 2.57
200 204 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
201 205 3.421844 AGACTTATGAACCAAACAGGGC 58.578 45.455 0.00 0.00 43.89 5.19
202 206 5.648092 CCTAAGACTTATGAACCAAACAGGG 59.352 44.000 0.00 0.00 43.89 4.45
203 207 6.371825 GTCCTAAGACTTATGAACCAAACAGG 59.628 42.308 2.20 0.00 40.95 4.00
204 208 7.365840 GTCCTAAGACTTATGAACCAAACAG 57.634 40.000 2.20 0.00 40.10 3.16
231 235 7.757611 TGGGACTTATAAGTTGGGACTAAAAA 58.242 34.615 18.96 0.00 39.88 1.94
232 236 7.332433 TGGGACTTATAAGTTGGGACTAAAA 57.668 36.000 18.96 0.00 39.88 1.52
233 237 6.956102 TGGGACTTATAAGTTGGGACTAAA 57.044 37.500 18.96 0.00 39.88 1.85
234 238 6.502863 ACTTGGGACTTATAAGTTGGGACTAA 59.497 38.462 18.96 10.32 39.88 2.24
235 239 6.027482 ACTTGGGACTTATAAGTTGGGACTA 58.973 40.000 18.96 3.96 39.88 2.59
236 240 4.850386 ACTTGGGACTTATAAGTTGGGACT 59.150 41.667 18.96 0.00 39.88 3.85
237 241 5.175388 ACTTGGGACTTATAAGTTGGGAC 57.825 43.478 18.96 6.19 39.88 4.46
238 242 4.226620 GGACTTGGGACTTATAAGTTGGGA 59.773 45.833 18.96 6.15 39.88 4.37
239 243 4.524053 GGACTTGGGACTTATAAGTTGGG 58.476 47.826 18.96 10.37 39.88 4.12
240 244 4.227527 AGGGACTTGGGACTTATAAGTTGG 59.772 45.833 18.96 10.07 34.84 3.77
241 245 5.437191 AGGGACTTGGGACTTATAAGTTG 57.563 43.478 18.96 9.81 34.84 3.16
242 246 7.578458 TTTAGGGACTTGGGACTTATAAGTT 57.422 36.000 18.96 2.29 38.78 2.66
243 247 7.578458 TTTTAGGGACTTGGGACTTATAAGT 57.422 36.000 18.05 18.05 40.66 2.24
244 248 8.107729 ACTTTTTAGGGACTTGGGACTTATAAG 58.892 37.037 11.05 11.05 41.75 1.73
245 249 7.992295 ACTTTTTAGGGACTTGGGACTTATAA 58.008 34.615 0.00 0.00 41.75 0.98
246 250 7.311486 GGACTTTTTAGGGACTTGGGACTTATA 60.311 40.741 0.00 0.00 41.75 0.98
247 251 6.464530 ACTTTTTAGGGACTTGGGACTTAT 57.535 37.500 0.00 0.00 41.75 1.73
248 252 5.221986 GGACTTTTTAGGGACTTGGGACTTA 60.222 44.000 0.00 0.00 41.75 2.24
249 253 4.447325 GGACTTTTTAGGGACTTGGGACTT 60.447 45.833 0.00 0.00 41.75 3.01
250 254 3.074094 GGACTTTTTAGGGACTTGGGACT 59.926 47.826 0.00 0.00 41.75 3.85
251 255 3.418995 GGACTTTTTAGGGACTTGGGAC 58.581 50.000 0.00 0.00 41.75 4.46
252 256 2.377531 GGGACTTTTTAGGGACTTGGGA 59.622 50.000 0.00 0.00 41.75 4.37
253 257 2.378886 AGGGACTTTTTAGGGACTTGGG 59.621 50.000 0.00 0.00 34.75 4.12
254 258 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
255 259 4.288887 AGGTAGGGACTTTTTAGGGACTTG 59.711 45.833 0.00 0.00 39.49 3.16
256 260 4.288887 CAGGTAGGGACTTTTTAGGGACTT 59.711 45.833 0.00 0.00 39.49 3.01
257 261 3.844804 CAGGTAGGGACTTTTTAGGGACT 59.155 47.826 0.00 0.00 41.75 3.85
258 262 3.586174 ACAGGTAGGGACTTTTTAGGGAC 59.414 47.826 0.00 0.00 41.75 4.46
259 263 3.878086 ACAGGTAGGGACTTTTTAGGGA 58.122 45.455 0.00 0.00 41.75 4.20
260 264 4.652679 AACAGGTAGGGACTTTTTAGGG 57.347 45.455 0.00 0.00 41.75 3.53
261 265 4.765339 CCAAACAGGTAGGGACTTTTTAGG 59.235 45.833 0.00 0.00 41.75 2.69
262 266 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
276 280 0.478507 AGTCCCAGGAACCAAACAGG 59.521 55.000 0.00 0.00 45.67 4.00
277 281 2.364972 AAGTCCCAGGAACCAAACAG 57.635 50.000 0.00 0.00 0.00 3.16
278 282 3.053544 TGTTAAGTCCCAGGAACCAAACA 60.054 43.478 0.00 0.00 0.00 2.83
279 283 3.558033 TGTTAAGTCCCAGGAACCAAAC 58.442 45.455 0.00 0.00 0.00 2.93
280 284 3.955524 TGTTAAGTCCCAGGAACCAAA 57.044 42.857 0.00 0.00 0.00 3.28
281 285 3.396276 TCATGTTAAGTCCCAGGAACCAA 59.604 43.478 0.00 0.00 0.00 3.67
282 286 2.983192 TCATGTTAAGTCCCAGGAACCA 59.017 45.455 0.00 0.00 0.00 3.67
283 287 3.713826 TCATGTTAAGTCCCAGGAACC 57.286 47.619 0.00 0.00 0.00 3.62
284 288 4.652822 AGTTCATGTTAAGTCCCAGGAAC 58.347 43.478 11.30 11.30 46.89 3.62
285 289 4.993705 AGTTCATGTTAAGTCCCAGGAA 57.006 40.909 0.00 0.00 0.00 3.36
286 290 6.442541 TTTAGTTCATGTTAAGTCCCAGGA 57.557 37.500 0.00 0.00 0.00 3.86
287 291 6.940298 TCTTTTAGTTCATGTTAAGTCCCAGG 59.060 38.462 0.00 0.00 0.00 4.45
288 292 7.094762 GGTCTTTTAGTTCATGTTAAGTCCCAG 60.095 40.741 0.00 0.00 0.00 4.45
289 293 6.713450 GGTCTTTTAGTTCATGTTAAGTCCCA 59.287 38.462 0.00 0.00 0.00 4.37
290 294 6.713450 TGGTCTTTTAGTTCATGTTAAGTCCC 59.287 38.462 0.00 0.00 0.00 4.46
291 295 7.739498 TGGTCTTTTAGTTCATGTTAAGTCC 57.261 36.000 0.00 0.00 0.00 3.85
309 313 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
318 322 9.372189 GGGACTTATAGGGACTTATAGTTGTAA 57.628 37.037 0.00 0.00 41.75 2.41
319 323 8.740512 AGGGACTTATAGGGACTTATAGTTGTA 58.259 37.037 0.00 0.00 34.75 2.41
320 324 7.602868 AGGGACTTATAGGGACTTATAGTTGT 58.397 38.462 0.00 0.00 34.75 3.32
321 325 7.178805 GGAGGGACTTATAGGGACTTATAGTTG 59.821 44.444 0.00 0.00 41.55 3.16
322 326 7.076566 AGGAGGGACTTATAGGGACTTATAGTT 59.923 40.741 0.00 0.00 41.55 2.24
323 327 6.571180 AGGAGGGACTTATAGGGACTTATAGT 59.429 42.308 0.00 0.00 41.55 2.12
324 328 7.046891 AGGAGGGACTTATAGGGACTTATAG 57.953 44.000 0.00 0.00 41.55 1.31
325 329 7.075915 TCAAGGAGGGACTTATAGGGACTTATA 59.924 40.741 0.00 0.00 41.55 0.98
326 330 5.970692 AGGAGGGACTTATAGGGACTTAT 57.029 43.478 0.00 0.00 41.55 1.73
327 331 5.197189 TCAAGGAGGGACTTATAGGGACTTA 59.803 44.000 0.00 0.00 41.55 2.24
328 332 4.015541 TCAAGGAGGGACTTATAGGGACTT 60.016 45.833 0.00 0.00 41.55 3.01
329 333 3.536434 TCAAGGAGGGACTTATAGGGACT 59.464 47.826 0.00 0.00 41.55 3.85
330 334 3.898741 CTCAAGGAGGGACTTATAGGGAC 59.101 52.174 0.00 0.00 41.55 4.46
331 335 3.797845 TCTCAAGGAGGGACTTATAGGGA 59.202 47.826 0.00 0.00 41.55 4.20
332 336 4.200447 TCTCAAGGAGGGACTTATAGGG 57.800 50.000 0.00 0.00 41.55 3.53
333 337 6.081356 AGATTCTCAAGGAGGGACTTATAGG 58.919 44.000 0.00 0.00 41.55 2.57
334 338 7.610580 AAGATTCTCAAGGAGGGACTTATAG 57.389 40.000 0.00 0.00 41.55 1.31
335 339 9.676129 AATAAGATTCTCAAGGAGGGACTTATA 57.324 33.333 0.00 0.00 41.55 0.98
336 340 8.574309 AATAAGATTCTCAAGGAGGGACTTAT 57.426 34.615 0.00 0.00 41.55 1.73
337 341 7.996758 AATAAGATTCTCAAGGAGGGACTTA 57.003 36.000 0.00 0.00 41.55 2.24
338 342 6.899892 AATAAGATTCTCAAGGAGGGACTT 57.100 37.500 0.00 0.00 41.55 3.01
340 344 6.653989 TGAAATAAGATTCTCAAGGAGGGAC 58.346 40.000 0.00 0.00 0.00 4.46
341 345 6.891306 TGAAATAAGATTCTCAAGGAGGGA 57.109 37.500 0.00 0.00 0.00 4.20
357 361 7.953005 TGGGCATTTGAGACTTATGAAATAA 57.047 32.000 0.00 0.00 36.20 1.40
358 362 8.537728 AATGGGCATTTGAGACTTATGAAATA 57.462 30.769 0.00 0.00 0.00 1.40
359 363 7.427989 AATGGGCATTTGAGACTTATGAAAT 57.572 32.000 0.00 0.00 0.00 2.17
360 364 6.855763 AATGGGCATTTGAGACTTATGAAA 57.144 33.333 0.00 0.00 0.00 2.69
361 365 6.855763 AAATGGGCATTTGAGACTTATGAA 57.144 33.333 0.00 0.00 39.36 2.57
362 366 7.615365 ACTTAAATGGGCATTTGAGACTTATGA 59.385 33.333 5.81 0.00 43.16 2.15
363 367 7.775120 ACTTAAATGGGCATTTGAGACTTATG 58.225 34.615 5.81 0.00 43.16 1.90
364 368 7.068716 GGACTTAAATGGGCATTTGAGACTTAT 59.931 37.037 5.81 0.00 43.16 1.73
365 369 6.377146 GGACTTAAATGGGCATTTGAGACTTA 59.623 38.462 5.81 0.00 43.16 2.24
366 370 5.185828 GGACTTAAATGGGCATTTGAGACTT 59.814 40.000 5.81 0.00 43.16 3.01
367 371 4.706962 GGACTTAAATGGGCATTTGAGACT 59.293 41.667 5.81 0.00 43.16 3.24
368 372 4.142160 GGGACTTAAATGGGCATTTGAGAC 60.142 45.833 5.81 0.00 43.16 3.36
369 373 4.023291 GGGACTTAAATGGGCATTTGAGA 58.977 43.478 5.81 0.00 43.16 3.27
370 374 4.026052 AGGGACTTAAATGGGCATTTGAG 58.974 43.478 0.84 0.84 44.84 3.02
371 375 4.059773 AGGGACTTAAATGGGCATTTGA 57.940 40.909 0.00 0.00 40.83 2.69
372 376 7.595819 TTATAGGGACTTAAATGGGCATTTG 57.404 36.000 0.00 0.00 39.68 2.32
373 377 8.797436 ATTTATAGGGACTTAAATGGGCATTT 57.203 30.769 0.00 0.00 41.22 2.32
374 378 7.454694 GGATTTATAGGGACTTAAATGGGCATT 59.545 37.037 0.00 0.00 41.75 3.56
375 379 6.954102 GGATTTATAGGGACTTAAATGGGCAT 59.046 38.462 0.00 0.00 41.75 4.40
376 380 6.311735 GGATTTATAGGGACTTAAATGGGCA 58.688 40.000 0.00 0.00 41.75 5.36
377 381 5.715279 GGGATTTATAGGGACTTAAATGGGC 59.285 44.000 0.00 0.00 41.75 5.36
378 382 7.103745 AGGGATTTATAGGGACTTAAATGGG 57.896 40.000 0.00 0.00 41.75 4.00
379 383 7.755618 TGAGGGATTTATAGGGACTTAAATGG 58.244 38.462 0.00 0.00 41.75 3.16
380 384 9.236006 CATGAGGGATTTATAGGGACTTAAATG 57.764 37.037 0.00 0.00 41.75 2.32
381 385 8.960064 ACATGAGGGATTTATAGGGACTTAAAT 58.040 33.333 0.00 0.00 41.75 1.40
382 386 8.344939 ACATGAGGGATTTATAGGGACTTAAA 57.655 34.615 0.00 0.00 41.75 1.52
383 387 7.947782 ACATGAGGGATTTATAGGGACTTAA 57.052 36.000 0.00 0.00 41.75 1.85
384 388 7.947782 AACATGAGGGATTTATAGGGACTTA 57.052 36.000 0.00 0.00 41.75 2.24
385 389 6.848562 AACATGAGGGATTTATAGGGACTT 57.151 37.500 0.00 0.00 41.75 3.01
386 390 6.410853 CCAAACATGAGGGATTTATAGGGACT 60.411 42.308 0.00 0.00 46.37 3.85
387 391 5.770162 CCAAACATGAGGGATTTATAGGGAC 59.230 44.000 0.00 0.00 0.00 4.46
388 392 5.435041 ACCAAACATGAGGGATTTATAGGGA 59.565 40.000 0.00 0.00 0.00 4.20
389 393 5.705400 ACCAAACATGAGGGATTTATAGGG 58.295 41.667 0.00 0.00 0.00 3.53
390 394 7.660030 AAACCAAACATGAGGGATTTATAGG 57.340 36.000 0.00 0.00 0.00 2.57
391 395 9.627123 TCTAAACCAAACATGAGGGATTTATAG 57.373 33.333 0.00 0.00 0.00 1.31
393 397 8.917088 CATCTAAACCAAACATGAGGGATTTAT 58.083 33.333 0.00 0.00 0.00 1.40
394 398 7.341769 CCATCTAAACCAAACATGAGGGATTTA 59.658 37.037 0.00 5.13 0.00 1.40
395 399 6.155049 CCATCTAAACCAAACATGAGGGATTT 59.845 38.462 0.00 4.33 0.00 2.17
396 400 5.658190 CCATCTAAACCAAACATGAGGGATT 59.342 40.000 0.00 1.40 0.00 3.01
397 401 5.203528 CCATCTAAACCAAACATGAGGGAT 58.796 41.667 0.00 0.00 0.00 3.85
398 402 4.569653 CCCATCTAAACCAAACATGAGGGA 60.570 45.833 0.00 0.00 33.23 4.20
399 403 3.701040 CCCATCTAAACCAAACATGAGGG 59.299 47.826 0.00 0.00 0.00 4.30
400 404 4.399303 GTCCCATCTAAACCAAACATGAGG 59.601 45.833 0.00 0.35 0.00 3.86
401 405 5.256474 AGTCCCATCTAAACCAAACATGAG 58.744 41.667 0.00 0.00 0.00 2.90
402 406 5.255397 AGTCCCATCTAAACCAAACATGA 57.745 39.130 0.00 0.00 0.00 3.07
403 407 5.982890 AAGTCCCATCTAAACCAAACATG 57.017 39.130 0.00 0.00 0.00 3.21
404 408 7.998964 CCTATAAGTCCCATCTAAACCAAACAT 59.001 37.037 0.00 0.00 0.00 2.71
405 409 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
406 410 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
407 411 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
408 412 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
409 413 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
410 414 5.012871 GGTCCCTATAAGTCCCATCTAAACC 59.987 48.000 0.00 0.00 0.00 3.27
411 415 5.012871 GGGTCCCTATAAGTCCCATCTAAAC 59.987 48.000 0.00 0.00 38.15 2.01
412 416 5.160386 GGGTCCCTATAAGTCCCATCTAAA 58.840 45.833 0.00 0.00 38.15 1.85
413 417 4.451760 GGGGTCCCTATAAGTCCCATCTAA 60.452 50.000 8.15 0.00 39.85 2.10
414 418 3.078612 GGGGTCCCTATAAGTCCCATCTA 59.921 52.174 8.15 0.00 39.85 1.98
415 419 2.157989 GGGGTCCCTATAAGTCCCATCT 60.158 54.545 8.15 0.00 39.85 2.90
416 420 2.157989 AGGGGTCCCTATAAGTCCCATC 60.158 54.545 8.15 0.00 46.14 3.51
417 421 1.880610 AGGGGTCCCTATAAGTCCCAT 59.119 52.381 8.15 0.00 46.14 4.00
418 422 1.336347 AGGGGTCCCTATAAGTCCCA 58.664 55.000 8.15 0.00 46.14 4.37
419 423 3.643242 TTAGGGGTCCCTATAAGTCCC 57.357 52.381 15.87 0.00 46.84 4.46
420 424 3.649981 GGTTTAGGGGTCCCTATAAGTCC 59.350 52.174 15.87 10.33 46.84 3.85
421 425 4.301205 TGGTTTAGGGGTCCCTATAAGTC 58.699 47.826 15.87 6.31 46.84 3.01
422 426 4.265631 ACTGGTTTAGGGGTCCCTATAAGT 60.266 45.833 15.87 13.22 46.84 2.24
423 427 4.304659 ACTGGTTTAGGGGTCCCTATAAG 58.695 47.826 15.87 12.70 46.84 1.73
424 428 4.372953 ACTGGTTTAGGGGTCCCTATAA 57.627 45.455 15.87 10.45 46.84 0.98
425 429 5.042371 ACTTACTGGTTTAGGGGTCCCTATA 60.042 44.000 15.87 9.10 46.84 1.31
426 430 2.984989 ACTGGTTTAGGGGTCCCTAT 57.015 50.000 15.87 4.63 46.84 2.57
427 431 3.079534 ACTTACTGGTTTAGGGGTCCCTA 59.920 47.826 11.56 11.56 46.14 3.53
429 433 2.238144 GACTTACTGGTTTAGGGGTCCC 59.762 54.545 0.00 0.00 0.00 4.46
430 434 2.238144 GGACTTACTGGTTTAGGGGTCC 59.762 54.545 0.00 0.00 36.78 4.46
431 435 2.238144 GGGACTTACTGGTTTAGGGGTC 59.762 54.545 0.00 0.00 0.00 4.46
432 436 2.157895 AGGGACTTACTGGTTTAGGGGT 60.158 50.000 0.00 0.00 27.25 4.95
433 437 2.238898 CAGGGACTTACTGGTTTAGGGG 59.761 54.545 0.00 0.00 34.60 4.79
434 438 3.178865 TCAGGGACTTACTGGTTTAGGG 58.821 50.000 0.00 0.00 34.60 3.53
435 439 4.903045 TTCAGGGACTTACTGGTTTAGG 57.097 45.455 0.00 0.00 34.60 2.69
436 440 6.059484 TGTTTTCAGGGACTTACTGGTTTAG 58.941 40.000 0.00 0.00 34.60 1.85
437 441 6.003859 TGTTTTCAGGGACTTACTGGTTTA 57.996 37.500 0.00 0.00 34.60 2.01
438 442 4.862371 TGTTTTCAGGGACTTACTGGTTT 58.138 39.130 0.00 0.00 34.60 3.27
439 443 4.513406 TGTTTTCAGGGACTTACTGGTT 57.487 40.909 0.00 0.00 34.60 3.67
440 444 4.513406 TTGTTTTCAGGGACTTACTGGT 57.487 40.909 0.00 0.00 34.60 4.00
441 445 4.642885 TGTTTGTTTTCAGGGACTTACTGG 59.357 41.667 0.00 0.00 34.60 4.00
442 446 5.449999 GGTGTTTGTTTTCAGGGACTTACTG 60.450 44.000 0.00 0.00 34.60 2.74
443 447 4.643334 GGTGTTTGTTTTCAGGGACTTACT 59.357 41.667 0.00 0.00 34.60 2.24
444 448 4.202080 GGGTGTTTGTTTTCAGGGACTTAC 60.202 45.833 0.00 0.00 34.60 2.34
445 449 3.955551 GGGTGTTTGTTTTCAGGGACTTA 59.044 43.478 0.00 0.00 34.60 2.24
446 450 2.764010 GGGTGTTTGTTTTCAGGGACTT 59.236 45.455 0.00 0.00 34.60 3.01
447 451 2.291930 TGGGTGTTTGTTTTCAGGGACT 60.292 45.455 0.00 0.00 43.88 3.85
448 452 2.104170 TGGGTGTTTGTTTTCAGGGAC 58.896 47.619 0.00 0.00 0.00 4.46
449 453 2.104170 GTGGGTGTTTGTTTTCAGGGA 58.896 47.619 0.00 0.00 0.00 4.20
450 454 2.107366 AGTGGGTGTTTGTTTTCAGGG 58.893 47.619 0.00 0.00 0.00 4.45
451 455 3.885724 AAGTGGGTGTTTGTTTTCAGG 57.114 42.857 0.00 0.00 0.00 3.86
452 456 8.977505 CATAATTAAGTGGGTGTTTGTTTTCAG 58.022 33.333 0.00 0.00 0.00 3.02
453 457 8.478877 ACATAATTAAGTGGGTGTTTGTTTTCA 58.521 29.630 0.00 0.00 0.00 2.69
454 458 8.760569 CACATAATTAAGTGGGTGTTTGTTTTC 58.239 33.333 12.06 0.00 32.24 2.29
455 459 7.225734 GCACATAATTAAGTGGGTGTTTGTTTT 59.774 33.333 19.39 0.00 36.29 2.43
456 460 6.704050 GCACATAATTAAGTGGGTGTTTGTTT 59.296 34.615 19.39 0.00 36.29 2.83
457 461 6.041523 AGCACATAATTAAGTGGGTGTTTGTT 59.958 34.615 19.39 0.00 36.29 2.83
458 462 5.538433 AGCACATAATTAAGTGGGTGTTTGT 59.462 36.000 19.39 0.00 36.29 2.83
459 463 5.863397 CAGCACATAATTAAGTGGGTGTTTG 59.137 40.000 19.39 8.71 36.29 2.93
460 464 5.538433 ACAGCACATAATTAAGTGGGTGTTT 59.462 36.000 19.39 2.92 36.29 2.83
461 465 5.076873 ACAGCACATAATTAAGTGGGTGTT 58.923 37.500 19.39 5.81 36.29 3.32
462 466 4.662278 ACAGCACATAATTAAGTGGGTGT 58.338 39.130 19.39 17.25 36.29 4.16
463 467 4.096382 GGACAGCACATAATTAAGTGGGTG 59.904 45.833 19.39 16.77 36.29 4.61
464 468 4.263727 TGGACAGCACATAATTAAGTGGGT 60.264 41.667 19.39 6.19 36.29 4.51
465 469 4.269183 TGGACAGCACATAATTAAGTGGG 58.731 43.478 19.39 3.76 36.29 4.61
466 470 6.455360 AATGGACAGCACATAATTAAGTGG 57.545 37.500 19.39 8.67 36.29 4.00
467 471 8.028354 TGAAAATGGACAGCACATAATTAAGTG 58.972 33.333 14.93 14.93 38.74 3.16
468 472 8.028938 GTGAAAATGGACAGCACATAATTAAGT 58.971 33.333 0.00 0.00 0.00 2.24
469 473 8.246180 AGTGAAAATGGACAGCACATAATTAAG 58.754 33.333 0.00 0.00 32.16 1.85
470 474 8.121305 AGTGAAAATGGACAGCACATAATTAA 57.879 30.769 0.00 0.00 32.16 1.40
471 475 7.701539 AGTGAAAATGGACAGCACATAATTA 57.298 32.000 0.00 0.00 32.16 1.40
472 476 6.594788 AGTGAAAATGGACAGCACATAATT 57.405 33.333 0.00 0.00 32.16 1.40
537 541 1.209019 CAAGGAGTGATGTAGCAGGCT 59.791 52.381 0.00 0.00 0.00 4.58
541 545 1.404181 GCGACAAGGAGTGATGTAGCA 60.404 52.381 6.20 0.00 44.38 3.49
585 590 8.994429 TCTTGACTGACATTAGAAGATTCTTC 57.006 34.615 17.04 17.04 38.70 2.87
596 601 3.307691 CCCAAGGCTCTTGACTGACATTA 60.308 47.826 14.33 0.00 0.00 1.90
652 657 3.469899 TCAACATGCGGAAATTTCGAG 57.530 42.857 11.95 9.56 0.00 4.04
741 748 9.623000 GGGCCTTATCTATAAGTTTCAAACTAA 57.377 33.333 2.38 0.00 41.91 2.24
763 773 1.600916 GGGATTGATGTAGCGGGCC 60.601 63.158 0.00 0.00 0.00 5.80
764 774 0.886490 CAGGGATTGATGTAGCGGGC 60.886 60.000 0.00 0.00 0.00 6.13
765 775 0.469917 ACAGGGATTGATGTAGCGGG 59.530 55.000 0.00 0.00 0.00 6.13
767 777 2.205074 GTGACAGGGATTGATGTAGCG 58.795 52.381 0.00 0.00 0.00 4.26
768 778 2.565841 GGTGACAGGGATTGATGTAGC 58.434 52.381 0.00 0.00 0.00 3.58
770 780 2.556766 TGGGTGACAGGGATTGATGTA 58.443 47.619 0.00 0.00 0.00 2.29
771 781 1.371467 TGGGTGACAGGGATTGATGT 58.629 50.000 0.00 0.00 0.00 3.06
775 785 2.558359 GTTTCTTGGGTGACAGGGATTG 59.442 50.000 0.00 0.00 0.00 2.67
776 786 2.490902 GGTTTCTTGGGTGACAGGGATT 60.491 50.000 0.00 0.00 0.00 3.01
778 788 0.476771 GGTTTCTTGGGTGACAGGGA 59.523 55.000 0.00 0.00 0.00 4.20
779 789 0.539669 GGGTTTCTTGGGTGACAGGG 60.540 60.000 0.00 0.00 0.00 4.45
780 790 0.184933 TGGGTTTCTTGGGTGACAGG 59.815 55.000 0.00 0.00 0.00 4.00
781 791 2.065899 TTGGGTTTCTTGGGTGACAG 57.934 50.000 0.00 0.00 0.00 3.51
782 792 2.176798 AGATTGGGTTTCTTGGGTGACA 59.823 45.455 0.00 0.00 0.00 3.58
783 793 2.876581 AGATTGGGTTTCTTGGGTGAC 58.123 47.619 0.00 0.00 0.00 3.67
784 794 3.230134 CAAGATTGGGTTTCTTGGGTGA 58.770 45.455 5.69 0.00 44.06 4.02
785 795 3.665745 CAAGATTGGGTTTCTTGGGTG 57.334 47.619 5.69 0.00 44.06 4.61
810 820 9.035890 TCTGGACTGACATTAGAAGATTCTTTA 57.964 33.333 0.00 0.00 38.70 1.85
814 824 5.752955 GCTCTGGACTGACATTAGAAGATTC 59.247 44.000 0.00 0.00 0.00 2.52
815 825 5.396213 GGCTCTGGACTGACATTAGAAGATT 60.396 44.000 0.00 0.00 0.00 2.40
816 826 4.100808 GGCTCTGGACTGACATTAGAAGAT 59.899 45.833 0.00 0.00 0.00 2.40
817 827 3.449018 GGCTCTGGACTGACATTAGAAGA 59.551 47.826 0.00 0.00 0.00 2.87
818 828 3.450457 AGGCTCTGGACTGACATTAGAAG 59.550 47.826 0.00 0.00 0.00 2.85
821 831 3.529533 CAAGGCTCTGGACTGACATTAG 58.470 50.000 0.00 0.00 0.00 1.73
822 832 2.355108 GCAAGGCTCTGGACTGACATTA 60.355 50.000 0.00 0.00 0.00 1.90
824 834 0.035630 GCAAGGCTCTGGACTGACAT 60.036 55.000 0.00 0.00 0.00 3.06
825 835 1.372683 GCAAGGCTCTGGACTGACA 59.627 57.895 0.00 0.00 0.00 3.58
827 837 1.881903 CTCGCAAGGCTCTGGACTGA 61.882 60.000 0.00 0.00 38.47 3.41
828 838 1.447489 CTCGCAAGGCTCTGGACTG 60.447 63.158 0.00 0.00 38.47 3.51
829 839 2.977178 CTCGCAAGGCTCTGGACT 59.023 61.111 0.00 0.00 38.47 3.85
830 840 1.949847 TAGCTCGCAAGGCTCTGGAC 61.950 60.000 0.00 0.00 42.51 4.02
832 842 1.520342 GTAGCTCGCAAGGCTCTGG 60.520 63.158 0.00 0.00 42.51 3.86
833 843 0.527385 GAGTAGCTCGCAAGGCTCTG 60.527 60.000 0.00 0.00 42.51 3.35
835 845 1.025812 TAGAGTAGCTCGCAAGGCTC 58.974 55.000 0.00 0.00 42.51 4.70
836 846 0.741915 GTAGAGTAGCTCGCAAGGCT 59.258 55.000 0.00 0.00 44.27 4.58
837 847 0.249114 GGTAGAGTAGCTCGCAAGGC 60.249 60.000 0.00 0.00 35.36 4.35
838 848 1.103803 TGGTAGAGTAGCTCGCAAGG 58.896 55.000 0.00 0.00 35.36 3.61
839 849 3.444703 AATGGTAGAGTAGCTCGCAAG 57.555 47.619 0.00 0.00 35.36 4.01
841 851 3.887621 AAAATGGTAGAGTAGCTCGCA 57.112 42.857 0.00 0.00 35.36 5.10
842 852 4.934515 ACTAAAATGGTAGAGTAGCTCGC 58.065 43.478 0.00 0.00 35.36 5.03
845 855 7.121759 TCGTTGTACTAAAATGGTAGAGTAGCT 59.878 37.037 0.00 0.00 0.00 3.32
846 856 7.253422 TCGTTGTACTAAAATGGTAGAGTAGC 58.747 38.462 0.00 0.00 0.00 3.58
847 857 9.630098 TTTCGTTGTACTAAAATGGTAGAGTAG 57.370 33.333 0.00 0.00 0.00 2.57
849 859 9.498176 AATTTCGTTGTACTAAAATGGTAGAGT 57.502 29.630 0.00 0.00 0.00 3.24
852 862 9.550811 GGAAATTTCGTTGTACTAAAATGGTAG 57.449 33.333 11.95 0.00 0.00 3.18
853 863 9.287373 AGGAAATTTCGTTGTACTAAAATGGTA 57.713 29.630 11.95 0.00 0.00 3.25
855 865 7.540745 CCAGGAAATTTCGTTGTACTAAAATGG 59.459 37.037 10.59 1.66 0.00 3.16
856 866 8.293867 TCCAGGAAATTTCGTTGTACTAAAATG 58.706 33.333 10.59 0.00 0.00 2.32
857 867 8.398878 TCCAGGAAATTTCGTTGTACTAAAAT 57.601 30.769 10.59 0.00 0.00 1.82
862 872 4.215613 GCTTCCAGGAAATTTCGTTGTACT 59.784 41.667 10.59 0.00 0.00 2.73
863 873 4.215613 AGCTTCCAGGAAATTTCGTTGTAC 59.784 41.667 10.59 0.00 0.00 2.90
864 874 4.394729 AGCTTCCAGGAAATTTCGTTGTA 58.605 39.130 10.59 1.54 0.00 2.41
865 875 3.222603 AGCTTCCAGGAAATTTCGTTGT 58.777 40.909 10.59 0.00 0.00 3.32
866 876 3.923017 AGCTTCCAGGAAATTTCGTTG 57.077 42.857 10.59 11.47 0.00 4.10
867 877 3.005791 CCAAGCTTCCAGGAAATTTCGTT 59.994 43.478 10.59 0.00 0.00 3.85
888 1005 3.246226 CAGAATGTTATAGTCAGCGCACC 59.754 47.826 11.47 0.00 0.00 5.01
889 1006 3.302740 GCAGAATGTTATAGTCAGCGCAC 60.303 47.826 11.47 0.00 39.31 5.34
893 1010 4.034510 GTGGTGCAGAATGTTATAGTCAGC 59.965 45.833 0.00 0.00 39.31 4.26
914 1031 4.115516 GTGCTCACCATACAGTATCTGTG 58.884 47.826 11.92 11.33 45.01 3.66
916 1033 4.366586 CTGTGCTCACCATACAGTATCTG 58.633 47.826 0.00 0.00 37.59 2.90
917 1034 3.386078 CCTGTGCTCACCATACAGTATCT 59.614 47.826 0.00 0.00 40.04 1.98
918 1035 3.384789 TCCTGTGCTCACCATACAGTATC 59.615 47.826 0.00 0.00 40.04 2.24
919 1036 3.374764 TCCTGTGCTCACCATACAGTAT 58.625 45.455 0.00 0.00 40.04 2.12
920 1037 2.815158 TCCTGTGCTCACCATACAGTA 58.185 47.619 0.00 0.00 40.04 2.74
921 1038 1.644509 TCCTGTGCTCACCATACAGT 58.355 50.000 0.00 0.00 40.04 3.55
922 1039 2.996249 ATCCTGTGCTCACCATACAG 57.004 50.000 0.00 0.00 41.04 2.74
923 1040 7.978099 ATATATATCCTGTGCTCACCATACA 57.022 36.000 0.00 0.00 0.00 2.29
994 1113 2.604382 ACCCCTGGCCATTGTTGC 60.604 61.111 5.51 0.00 0.00 4.17
999 1118 3.256960 ACGTGACCCCTGGCCATT 61.257 61.111 5.51 0.00 0.00 3.16
1779 1939 0.471780 TGGTGGAGAGCTTGTGGAGA 60.472 55.000 0.00 0.00 0.00 3.71
2226 2392 4.436998 GTCCGCCACACCTCCTCG 62.437 72.222 0.00 0.00 0.00 4.63
2288 2454 3.076258 ATGAACCTCGCGATCGCCA 62.076 57.895 32.63 23.33 37.98 5.69
2393 2559 0.037326 CTTGTCTACCGCCAGCTGAA 60.037 55.000 17.39 0.00 0.00 3.02
2532 2962 9.667107 TTCAACTTTGTATTATTAGTGAGGGAG 57.333 33.333 0.00 0.00 0.00 4.30
2547 2977 9.219603 CCTCAGAATAAGTGATTCAACTTTGTA 57.780 33.333 2.94 0.00 45.69 2.41
2548 2978 7.939039 TCCTCAGAATAAGTGATTCAACTTTGT 59.061 33.333 2.94 0.00 45.69 2.83
2553 2983 6.100004 TCGTCCTCAGAATAAGTGATTCAAC 58.900 40.000 2.94 0.00 45.69 3.18
2563 2993 7.792032 ACATATTTCCTTCGTCCTCAGAATAA 58.208 34.615 0.00 0.00 0.00 1.40
2573 3003 3.518590 ACCGTGACATATTTCCTTCGTC 58.481 45.455 0.00 0.00 0.00 4.20
2574 3004 3.604875 ACCGTGACATATTTCCTTCGT 57.395 42.857 0.00 0.00 0.00 3.85
2575 3005 4.503007 CACTACCGTGACATATTTCCTTCG 59.497 45.833 0.00 0.00 43.97 3.79
2629 3064 6.183360 TGCCAAGTCAGTAAAGAAGTACTCTT 60.183 38.462 0.00 0.00 46.92 2.85
2685 3407 7.989741 ACACCCTCTCATACATATTTGAGAAAG 59.010 37.037 9.77 7.38 45.64 2.62
2697 3419 7.379059 AATGAATGATACACCCTCTCATACA 57.621 36.000 0.00 0.00 0.00 2.29
2701 3423 8.956446 TCTATAATGAATGATACACCCTCTCA 57.044 34.615 0.00 0.00 0.00 3.27
2746 3468 0.697658 TGTCCTGCATGACCCATTGA 59.302 50.000 18.00 0.00 34.25 2.57
2804 3526 2.943690 GAGTAGTCGGTCATGTAGCTCA 59.056 50.000 0.00 0.00 0.00 4.26
2838 3560 0.708209 TAGTAGTGGAGGCCTCACCA 59.292 55.000 33.29 21.72 43.14 4.17
2879 3601 2.100631 CGACAACGGGGCTGATCAC 61.101 63.158 0.00 0.00 35.72 3.06
2880 3602 2.264480 CGACAACGGGGCTGATCA 59.736 61.111 0.00 0.00 35.72 2.92
2881 3603 3.195698 GCGACAACGGGGCTGATC 61.196 66.667 0.00 0.00 40.15 2.92
2882 3604 4.778143 GGCGACAACGGGGCTGAT 62.778 66.667 0.00 0.00 40.15 2.90
2893 3615 2.372074 GGGAAGGGTATGGGCGACA 61.372 63.158 0.00 0.00 0.00 4.35
2935 3657 1.626686 CGTCTCCATCTCTAGCCCAT 58.373 55.000 0.00 0.00 0.00 4.00
2956 3678 4.509230 CGGAATGACATCATCTTCAACGAT 59.491 41.667 0.00 0.00 35.10 3.73
2967 3689 2.224646 TGGAAACACCGGAATGACATCA 60.225 45.455 9.46 0.00 42.61 3.07
3016 3738 1.374252 CAAGAAGTACGCACGGGCT 60.374 57.895 8.62 0.00 38.10 5.19
3047 3769 0.615331 TGTCAGATGGGAACTGAGCC 59.385 55.000 0.00 0.00 43.58 4.70
3048 3770 1.002430 TGTGTCAGATGGGAACTGAGC 59.998 52.381 0.00 0.00 43.58 4.26
3058 3780 1.372582 CCCGATTGGTGTGTCAGATG 58.627 55.000 0.00 0.00 0.00 2.90
3059 3781 0.392998 GCCCGATTGGTGTGTCAGAT 60.393 55.000 0.00 0.00 36.04 2.90
3122 3844 0.469494 ATGGCACCACATCGCTATCA 59.531 50.000 0.00 0.00 0.00 2.15
3133 3855 0.106708 GCGAAGGAGATATGGCACCA 59.893 55.000 0.00 0.00 0.00 4.17
3162 3884 6.198029 CAGAGTGACGAGACATAATGATCAAC 59.802 42.308 0.00 0.00 0.00 3.18
3201 3933 0.905357 CGACCCCATCAAGTCTCCTT 59.095 55.000 0.00 0.00 0.00 3.36
3240 3972 0.598680 AATCGCTGCTAGACATCCGC 60.599 55.000 0.00 0.00 0.00 5.54
3249 3994 1.586422 GCCATCAAGAATCGCTGCTA 58.414 50.000 0.00 0.00 0.00 3.49
3272 4017 2.354821 GGAGTGTCGCTTCTTTTGTTGT 59.645 45.455 0.00 0.00 0.00 3.32
3276 4021 1.069636 GCTGGAGTGTCGCTTCTTTTG 60.070 52.381 0.00 0.00 0.00 2.44
3292 4037 1.646189 GAAGTCTAAAGCTCCGCTGG 58.354 55.000 0.00 0.00 39.62 4.85
3333 4078 9.556266 GGGGTCCTCCTCCTTTTCTAAAGAAAA 62.556 44.444 15.20 15.20 41.90 2.29
3334 4079 5.222068 GGGTCCTCCTCCTTTTCTAAAGAAA 60.222 44.000 1.00 1.00 41.77 2.52
3335 4080 4.288887 GGGTCCTCCTCCTTTTCTAAAGAA 59.711 45.833 0.89 0.00 0.00 2.52
3336 4081 3.844804 GGGTCCTCCTCCTTTTCTAAAGA 59.155 47.826 0.89 0.00 0.00 2.52
3337 4082 3.054287 GGGGTCCTCCTCCTTTTCTAAAG 60.054 52.174 0.00 0.00 35.33 1.85
3338 4083 2.917600 GGGGTCCTCCTCCTTTTCTAAA 59.082 50.000 0.00 0.00 35.33 1.85
3339 4084 2.558974 GGGGTCCTCCTCCTTTTCTAA 58.441 52.381 0.00 0.00 35.33 2.10
3340 4085 2.265526 GGGGTCCTCCTCCTTTTCTA 57.734 55.000 0.00 0.00 35.33 2.10
3341 4086 3.106441 GGGGTCCTCCTCCTTTTCT 57.894 57.895 0.00 0.00 35.33 2.52
3357 4102 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
3358 4103 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
3359 4104 3.473647 TCCAGATGCAGAGGCCGG 61.474 66.667 0.00 0.00 40.13 6.13
3360 4105 2.202987 GTCCAGATGCAGAGGCCG 60.203 66.667 0.00 0.00 40.13 6.13
3361 4106 2.037620 ATCGTCCAGATGCAGAGGCC 62.038 60.000 0.00 0.00 38.36 5.19
3362 4107 1.445095 ATCGTCCAGATGCAGAGGC 59.555 57.895 0.00 0.00 38.36 4.70
3370 4115 0.390860 GCTACCTGCATCGTCCAGAT 59.609 55.000 0.00 0.00 42.31 2.90
3371 4116 1.676678 GGCTACCTGCATCGTCCAGA 61.677 60.000 0.00 0.00 45.15 3.86
3372 4117 1.227380 GGCTACCTGCATCGTCCAG 60.227 63.158 0.00 0.00 45.15 3.86
3373 4118 1.987306 TGGCTACCTGCATCGTCCA 60.987 57.895 0.00 0.00 45.15 4.02
3374 4119 1.521681 GTGGCTACCTGCATCGTCC 60.522 63.158 0.00 0.00 45.15 4.79
3375 4120 0.108138 AAGTGGCTACCTGCATCGTC 60.108 55.000 0.00 0.00 45.15 4.20
3376 4121 0.324943 AAAGTGGCTACCTGCATCGT 59.675 50.000 0.00 0.00 45.15 3.73
3377 4122 2.309528 TAAAGTGGCTACCTGCATCG 57.690 50.000 0.00 0.00 45.15 3.84
3378 4123 6.884280 ATTAATAAAGTGGCTACCTGCATC 57.116 37.500 0.00 0.00 45.15 3.91
3379 4124 8.940397 ATAATTAATAAAGTGGCTACCTGCAT 57.060 30.769 0.00 0.00 45.15 3.96
3380 4125 8.760980 AATAATTAATAAAGTGGCTACCTGCA 57.239 30.769 0.00 0.00 45.15 4.41
3381 4126 8.846211 TGAATAATTAATAAAGTGGCTACCTGC 58.154 33.333 0.00 0.00 41.94 4.85
3383 4128 9.914834 TGTGAATAATTAATAAAGTGGCTACCT 57.085 29.630 0.00 0.00 0.00 3.08
3384 4129 9.946165 GTGTGAATAATTAATAAAGTGGCTACC 57.054 33.333 0.00 0.00 0.00 3.18
3401 4146 9.114952 TGACTTTGTAATGTCTTGTGTGAATAA 57.885 29.630 10.67 0.00 35.01 1.40
3402 4147 8.669946 TGACTTTGTAATGTCTTGTGTGAATA 57.330 30.769 10.67 0.00 35.01 1.75
3403 4148 7.566760 TGACTTTGTAATGTCTTGTGTGAAT 57.433 32.000 10.67 0.00 35.01 2.57
3404 4149 6.993786 TGACTTTGTAATGTCTTGTGTGAA 57.006 33.333 10.67 0.00 35.01 3.18
3405 4150 7.713073 TGTATGACTTTGTAATGTCTTGTGTGA 59.287 33.333 10.67 0.00 35.01 3.58
3406 4151 7.860613 TGTATGACTTTGTAATGTCTTGTGTG 58.139 34.615 10.67 0.00 35.01 3.82
3407 4152 8.342634 GTTGTATGACTTTGTAATGTCTTGTGT 58.657 33.333 10.67 0.00 35.01 3.72
3408 4153 8.341903 TGTTGTATGACTTTGTAATGTCTTGTG 58.658 33.333 10.67 0.00 35.01 3.33
3409 4154 8.445275 TGTTGTATGACTTTGTAATGTCTTGT 57.555 30.769 10.67 2.55 35.01 3.16
3410 4155 8.559536 ACTGTTGTATGACTTTGTAATGTCTTG 58.440 33.333 10.67 0.00 35.01 3.02
3411 4156 8.677148 ACTGTTGTATGACTTTGTAATGTCTT 57.323 30.769 10.67 7.75 35.01 3.01
3412 4157 9.772973 TTACTGTTGTATGACTTTGTAATGTCT 57.227 29.630 10.67 2.08 35.01 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.