Multiple sequence alignment - TraesCS3D01G460800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G460800 chr3D 100.000 5246 0 0 1 5246 565611080 565605835 0.000000e+00 9688.0
1 TraesCS3D01G460800 chr3D 88.460 3033 240 53 1580 4542 565562756 565559764 0.000000e+00 3561.0
2 TraesCS3D01G460800 chr3D 86.574 931 85 20 503 1420 565563814 565562911 0.000000e+00 990.0
3 TraesCS3D01G460800 chr3D 77.306 683 104 32 3626 4292 564305197 564305844 6.460000e-94 355.0
4 TraesCS3D01G460800 chr3D 85.603 257 22 12 4698 4949 565559587 565559341 6.740000e-64 255.0
5 TraesCS3D01G460800 chr3D 82.796 186 30 2 4134 4318 564202914 564203098 1.170000e-36 165.0
6 TraesCS3D01G460800 chr3D 83.158 95 16 0 4854 4948 564522095 564522189 2.600000e-13 87.9
7 TraesCS3D01G460800 chr3B 95.218 4559 147 22 431 4949 753679186 753674659 0.000000e+00 7145.0
8 TraesCS3D01G460800 chr3B 88.260 2104 147 30 2500 4542 753580281 753578217 0.000000e+00 2425.0
9 TraesCS3D01G460800 chr3B 87.474 1956 150 50 467 2389 753582162 753580269 0.000000e+00 2167.0
10 TraesCS3D01G460800 chr3B 93.590 234 10 2 5017 5246 753674615 753674383 1.400000e-90 344.0
11 TraesCS3D01G460800 chr3B 82.903 310 37 12 4639 4940 752077931 752078232 1.120000e-66 265.0
12 TraesCS3D01G460800 chr3B 84.507 284 24 7 5 268 753679933 753679650 4.030000e-66 263.0
13 TraesCS3D01G460800 chr3B 82.667 300 38 10 4651 4940 752047895 752048190 2.420000e-63 254.0
14 TraesCS3D01G460800 chr3B 94.839 155 8 0 266 420 753679388 753679234 5.250000e-60 243.0
15 TraesCS3D01G460800 chr3B 79.494 356 50 13 3862 4204 752042550 752042895 1.140000e-56 231.0
16 TraesCS3D01G460800 chr3B 83.658 257 23 11 4701 4949 753578037 753577792 1.900000e-54 224.0
17 TraesCS3D01G460800 chr3B 79.935 309 40 14 4639 4940 752038806 752039099 1.910000e-49 207.0
18 TraesCS3D01G460800 chr3B 83.240 179 28 2 4141 4318 751953302 751953479 4.200000e-36 163.0
19 TraesCS3D01G460800 chr3A 96.223 2489 72 11 2473 4950 699767497 699765020 0.000000e+00 4056.0
20 TraesCS3D01G460800 chr3A 88.603 2913 208 41 1691 4510 699755697 699752816 0.000000e+00 3426.0
21 TraesCS3D01G460800 chr3A 91.366 1193 67 12 456 1623 699769931 699768750 0.000000e+00 1600.0
22 TraesCS3D01G460800 chr3A 95.607 865 29 1 1621 2476 699768560 699767696 0.000000e+00 1378.0
23 TraesCS3D01G460800 chr3A 85.795 1232 100 38 509 1677 699756902 699755683 0.000000e+00 1236.0
24 TraesCS3D01G460800 chr3A 96.259 294 11 0 4953 5246 699764876 699764583 2.840000e-132 483.0
25 TraesCS3D01G460800 chr3A 77.827 681 106 27 3626 4292 698855005 698855654 3.830000e-101 379.0
26 TraesCS3D01G460800 chr3A 80.259 309 39 13 4639 4940 698856027 698856320 4.120000e-51 213.0
27 TraesCS3D01G460800 chr3A 83.333 186 29 2 4134 4318 698762328 698762512 2.510000e-38 171.0
28 TraesCS3D01G460800 chr3A 79.812 213 23 12 5 197 699832149 699831937 2.550000e-28 137.0
29 TraesCS3D01G460800 chr6D 80.187 2347 320 76 2022 4287 30097456 30095174 0.000000e+00 1624.0
30 TraesCS3D01G460800 chr6D 92.384 302 17 3 4950 5246 380450936 380451236 4.860000e-115 425.0
31 TraesCS3D01G460800 chr6D 96.269 134 3 1 4812 4943 380450768 380450901 8.850000e-53 219.0
32 TraesCS3D01G460800 chr6A 80.121 2314 311 80 2022 4250 32741648 32743897 0.000000e+00 1587.0
33 TraesCS3D01G460800 chr6A 77.549 2864 398 127 1564 4287 45353788 45356546 0.000000e+00 1500.0
34 TraesCS3D01G460800 chr6A 79.539 2170 288 72 2186 4283 32812115 32810030 0.000000e+00 1404.0
35 TraesCS3D01G460800 chr6A 87.234 94 9 3 1120 1212 32813707 32813616 2.580000e-18 104.0
36 TraesCS3D01G460800 chr6B 79.939 2313 314 85 2022 4250 57417605 57419851 0.000000e+00 1563.0
37 TraesCS3D01G460800 chr6B 76.863 2818 406 126 1595 4287 50410011 50407315 0.000000e+00 1365.0
38 TraesCS3D01G460800 chr6B 78.476 2165 294 79 2194 4283 57733622 57731555 0.000000e+00 1258.0
39 TraesCS3D01G460800 chr6B 80.539 853 121 27 2193 3030 56396986 56396164 9.660000e-172 614.0
40 TraesCS3D01G460800 chr6B 79.315 701 100 25 2346 3028 56378588 56377915 2.880000e-122 449.0
41 TraesCS3D01G460800 chr6B 91.639 299 19 3 4953 5246 565400623 565400326 4.890000e-110 409.0
42 TraesCS3D01G460800 chr6B 94.118 136 7 1 4815 4949 565400790 565400655 6.890000e-49 206.0
43 TraesCS3D01G460800 chr6B 85.263 95 10 4 1120 1212 57736369 57736277 1.560000e-15 95.3
44 TraesCS3D01G460800 chrUn 79.285 2351 314 87 2022 4283 27473492 27475758 0.000000e+00 1483.0
45 TraesCS3D01G460800 chrUn 77.321 2844 411 121 1564 4287 137913871 137911142 0.000000e+00 1463.0
46 TraesCS3D01G460800 chrUn 88.889 81 7 2 1120 1199 68355846 68355925 1.200000e-16 99.0
47 TraesCS3D01G460800 chrUn 100.000 31 0 0 1266 1296 137914369 137914339 2.040000e-04 58.4
48 TraesCS3D01G460800 chr2B 84.824 1364 113 43 503 1806 760315907 760317236 0.000000e+00 1286.0
49 TraesCS3D01G460800 chr2D 77.807 2307 298 106 2083 4283 48565443 48567641 0.000000e+00 1227.0
50 TraesCS3D01G460800 chr1B 89.855 69 5 1 4953 5019 674821487 674821419 2.600000e-13 87.9
51 TraesCS3D01G460800 chr1B 85.075 67 6 4 4947 5010 320105996 320105931 1.220000e-06 65.8
52 TraesCS3D01G460800 chr1D 90.769 65 4 2 4953 5017 484566536 484566474 9.360000e-13 86.1
53 TraesCS3D01G460800 chr7B 88.406 69 8 0 4951 5019 407941078 407941146 3.370000e-12 84.2
54 TraesCS3D01G460800 chr7D 87.931 58 3 3 4750 4805 575488392 575488447 1.220000e-06 65.8
55 TraesCS3D01G460800 chr5A 100.000 28 0 0 4952 4979 485201737 485201710 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G460800 chr3D 565605835 565611080 5245 True 9688.000000 9688 100.00000 1 5246 1 chr3D.!!$R1 5245
1 TraesCS3D01G460800 chr3D 565559341 565563814 4473 True 1602.000000 3561 86.87900 503 4949 3 chr3D.!!$R2 4446
2 TraesCS3D01G460800 chr3D 564305197 564305844 647 False 355.000000 355 77.30600 3626 4292 1 chr3D.!!$F2 666
3 TraesCS3D01G460800 chr3B 753674383 753679933 5550 True 1998.750000 7145 92.03850 5 5246 4 chr3B.!!$R2 5241
4 TraesCS3D01G460800 chr3B 753577792 753582162 4370 True 1605.333333 2425 86.46400 467 4949 3 chr3B.!!$R1 4482
5 TraesCS3D01G460800 chr3B 752038806 752042895 4089 False 219.000000 231 79.71450 3862 4940 2 chr3B.!!$F4 1078
6 TraesCS3D01G460800 chr3A 699752816 699756902 4086 True 2331.000000 3426 87.19900 509 4510 2 chr3A.!!$R2 4001
7 TraesCS3D01G460800 chr3A 699764583 699769931 5348 True 1879.250000 4056 94.86375 456 5246 4 chr3A.!!$R3 4790
8 TraesCS3D01G460800 chr3A 698855005 698856320 1315 False 296.000000 379 79.04300 3626 4940 2 chr3A.!!$F2 1314
9 TraesCS3D01G460800 chr6D 30095174 30097456 2282 True 1624.000000 1624 80.18700 2022 4287 1 chr6D.!!$R1 2265
10 TraesCS3D01G460800 chr6A 32741648 32743897 2249 False 1587.000000 1587 80.12100 2022 4250 1 chr6A.!!$F1 2228
11 TraesCS3D01G460800 chr6A 45353788 45356546 2758 False 1500.000000 1500 77.54900 1564 4287 1 chr6A.!!$F2 2723
12 TraesCS3D01G460800 chr6A 32810030 32813707 3677 True 754.000000 1404 83.38650 1120 4283 2 chr6A.!!$R1 3163
13 TraesCS3D01G460800 chr6B 57417605 57419851 2246 False 1563.000000 1563 79.93900 2022 4250 1 chr6B.!!$F1 2228
14 TraesCS3D01G460800 chr6B 50407315 50410011 2696 True 1365.000000 1365 76.86300 1595 4287 1 chr6B.!!$R1 2692
15 TraesCS3D01G460800 chr6B 57731555 57736369 4814 True 676.650000 1258 81.86950 1120 4283 2 chr6B.!!$R4 3163
16 TraesCS3D01G460800 chr6B 56396164 56396986 822 True 614.000000 614 80.53900 2193 3030 1 chr6B.!!$R3 837
17 TraesCS3D01G460800 chr6B 56377915 56378588 673 True 449.000000 449 79.31500 2346 3028 1 chr6B.!!$R2 682
18 TraesCS3D01G460800 chrUn 27473492 27475758 2266 False 1483.000000 1483 79.28500 2022 4283 1 chrUn.!!$F1 2261
19 TraesCS3D01G460800 chrUn 137911142 137914369 3227 True 760.700000 1463 88.66050 1266 4287 2 chrUn.!!$R1 3021
20 TraesCS3D01G460800 chr2B 760315907 760317236 1329 False 1286.000000 1286 84.82400 503 1806 1 chr2B.!!$F1 1303
21 TraesCS3D01G460800 chr2D 48565443 48567641 2198 False 1227.000000 1227 77.80700 2083 4283 1 chr2D.!!$F1 2200

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 137 0.109504 GACGTCTGACTGCCTCTCAC 60.110 60.000 8.7 0.0 0.00 3.51 F
572 906 0.606401 CACCCTCGGCACATTTCTGT 60.606 55.000 0.0 0.0 35.44 3.41 F
1704 3849 0.739813 GGGAAATCGTGAGGTCGTGG 60.740 60.000 0.0 0.0 0.00 4.94 F
1771 3920 3.051081 TGAGCTTCCTCTCTCAAAAGC 57.949 47.619 0.0 0.0 43.44 3.51 F
3004 6032 3.131400 CCAGGAGCTACAGAGTAAGTTCC 59.869 52.174 0.0 0.0 41.88 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1693 3838 0.535335 TAATCAGGCCACGACCTCAC 59.465 55.000 5.01 0.0 38.26 3.51 R
1746 3891 4.727507 TTGAGAGAGGAAGCTCATACAC 57.272 45.455 0.00 0.0 40.51 2.90 R
2891 5895 0.036732 TCCTCATGTGTGTCTTGCCC 59.963 55.000 0.00 0.0 0.00 5.36 R
3036 6074 3.737559 TTATCCCTCACAGGCATGTTT 57.262 42.857 0.00 0.0 37.65 2.83 R
4965 8444 1.421268 AGAGTCCATGGCAGTGTCAAA 59.579 47.619 6.96 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.026718 GGATGCCCGGTCTTGAAGTG 61.027 60.000 0.00 0.00 0.00 3.16
49 50 3.056328 GCCCGGTCTTGAAGTGGC 61.056 66.667 0.00 0.00 0.00 5.01
76 78 2.417339 TTAGCTATTCGGCGTGCTAG 57.583 50.000 6.85 7.70 38.90 3.42
82 84 1.614241 ATTCGGCGTGCTAGGGAAGT 61.614 55.000 6.85 0.00 0.00 3.01
83 85 2.501223 TTCGGCGTGCTAGGGAAGTG 62.501 60.000 6.85 0.00 0.00 3.16
99 116 3.548014 GGAAGTGTGTCAAACCGTCAATG 60.548 47.826 0.00 0.00 0.00 2.82
102 119 2.353269 GTGTGTCAAACCGTCAATGTGA 59.647 45.455 0.00 0.00 0.00 3.58
116 133 0.244994 ATGTGACGTCTGACTGCCTC 59.755 55.000 17.92 0.00 0.00 4.70
120 137 0.109504 GACGTCTGACTGCCTCTCAC 60.110 60.000 8.70 0.00 0.00 3.51
135 156 3.868077 CCTCTCACGTCCAGAATCAAATC 59.132 47.826 0.00 0.00 0.00 2.17
142 163 7.782049 TCACGTCCAGAATCAAATCTAATACT 58.218 34.615 0.00 0.00 0.00 2.12
147 168 9.039870 GTCCAGAATCAAATCTAATACTCAGTG 57.960 37.037 0.00 0.00 0.00 3.66
164 185 3.055819 TCAGTGTCACTCAAGATTAGGGC 60.056 47.826 1.37 0.00 0.00 5.19
174 195 2.618709 CAAGATTAGGGCCCGTGATTTC 59.381 50.000 18.44 9.03 0.00 2.17
217 238 1.264672 GCGTTGCACGTTGTTCTTTT 58.735 45.000 9.76 0.00 44.73 2.27
268 289 4.308899 AGGCACATAAGTTAGCTCGTAG 57.691 45.455 0.00 0.00 0.00 3.51
413 698 1.134461 TGCAATGCAACCAAACAAGCT 60.134 42.857 5.01 0.00 34.76 3.74
420 705 3.929610 TGCAACCAAACAAGCTAAAACAC 59.070 39.130 0.00 0.00 0.00 3.32
422 707 2.804647 ACCAAACAAGCTAAAACACGC 58.195 42.857 0.00 0.00 0.00 5.34
423 708 2.425668 ACCAAACAAGCTAAAACACGCT 59.574 40.909 0.00 0.00 38.30 5.07
424 709 3.119280 ACCAAACAAGCTAAAACACGCTT 60.119 39.130 0.00 0.00 46.59 4.68
429 714 6.747659 AACAAGCTAAAACACGCTTAAATG 57.252 33.333 0.00 0.00 44.06 2.32
433 718 5.095490 AGCTAAAACACGCTTAAATGCATC 58.905 37.500 0.00 0.00 31.17 3.91
434 719 4.265320 GCTAAAACACGCTTAAATGCATCC 59.735 41.667 0.00 0.00 0.00 3.51
435 720 2.939460 AACACGCTTAAATGCATCCC 57.061 45.000 0.00 0.00 0.00 3.85
572 906 0.606401 CACCCTCGGCACATTTCTGT 60.606 55.000 0.00 0.00 35.44 3.41
711 1058 4.862823 CCCGGGGACTCCTCCTCC 62.863 77.778 14.71 0.00 32.43 4.30
766 1152 2.039624 ATGCCTCCTCCACCTCGT 59.960 61.111 0.00 0.00 0.00 4.18
1123 1525 2.346099 GCTTTTGCGGCATTCTGTTA 57.654 45.000 2.28 0.00 34.86 2.41
1660 3660 9.369904 GTCTGGCATCATATTTTAAACAAATGT 57.630 29.630 0.00 0.00 0.00 2.71
1693 3838 2.680841 TCTGTAAAATGCGGGGAAATCG 59.319 45.455 0.00 0.00 0.00 3.34
1704 3849 0.739813 GGGAAATCGTGAGGTCGTGG 60.740 60.000 0.00 0.00 0.00 4.94
1746 3891 4.264460 AGTAACAGAGCCTGAAGTCAAG 57.736 45.455 8.91 0.00 35.18 3.02
1763 3912 4.159506 AGTCAAGTGTATGAGCTTCCTCTC 59.840 45.833 0.00 0.00 38.93 3.20
1771 3920 3.051081 TGAGCTTCCTCTCTCAAAAGC 57.949 47.619 0.00 0.00 43.44 3.51
2018 4173 7.144661 CACATTTTGTGGTCTTGCTATTACAA 58.855 34.615 0.00 0.00 44.27 2.41
2258 4429 6.601741 TTTTTCAAAATGGAAGTGCATGAC 57.398 33.333 0.00 0.00 0.00 3.06
2437 5215 7.599630 TGTTGGGTTTATCAGACGTTAATAC 57.400 36.000 0.00 0.00 0.00 1.89
2478 5462 5.264060 ACTGAACACAACGAATCAATACG 57.736 39.130 0.00 0.00 0.00 3.06
2586 5574 7.148934 CCCCGTCACATTTTAAAATACGTTTTC 60.149 37.037 23.16 8.90 38.44 2.29
2891 5895 3.567164 ACAACAGGAGCAAGTTCTTGATG 59.433 43.478 15.52 4.30 34.54 3.07
3004 6032 3.131400 CCAGGAGCTACAGAGTAAGTTCC 59.869 52.174 0.00 0.00 41.88 3.62
3055 6105 6.501805 AGATATAAACATGCCTGTGAGGGATA 59.498 38.462 0.00 0.00 45.29 2.59
3085 6137 5.864418 TCAGGTTACAGTACACTTCAAGT 57.136 39.130 0.00 0.00 0.00 3.16
3269 6340 7.406799 AATTACTTGCAATAACAACAGCAAC 57.593 32.000 0.00 0.00 41.55 4.17
3355 6438 7.944729 ATTATGTAGCCATCTCACTGTTTTT 57.055 32.000 0.00 0.00 32.29 1.94
3615 6754 6.050432 TGATTTGCTTGTTTTCTGCAATTCT 58.950 32.000 16.87 2.02 44.55 2.40
4350 7578 3.071023 TGGGTAGCCATAGCATACACTTC 59.929 47.826 10.27 0.00 43.56 3.01
4469 7736 5.566826 GCTGGTGTACTGTGAATCTTCTGTA 60.567 44.000 0.00 0.00 0.00 2.74
4510 7777 7.611213 ACTTGTTAATTCCGTCCATCTTTAG 57.389 36.000 0.00 0.00 0.00 1.85
4659 7984 4.505566 GCCTATCCCAATGAAGCAGATACA 60.506 45.833 0.00 0.00 0.00 2.29
4810 8143 1.244816 GCTGGTTTACCCTTGTGTCC 58.755 55.000 0.00 0.00 34.29 4.02
4950 8288 7.391554 ACATATGCAGTAACAAGTGATCAGTTT 59.608 33.333 13.25 3.00 0.00 2.66
4951 8289 8.882736 CATATGCAGTAACAAGTGATCAGTTTA 58.117 33.333 13.25 2.01 0.00 2.01
4985 8464 1.059098 TTGACACTGCCATGGACTCT 58.941 50.000 18.40 0.00 0.00 3.24
4986 8465 1.937191 TGACACTGCCATGGACTCTA 58.063 50.000 18.40 0.00 0.00 2.43
5011 8490 4.727235 ACGTCTTGTAAAAAGCTACAGC 57.273 40.909 0.00 0.00 42.49 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.411517 AAGACCGGGCATCCCAGG 61.412 66.667 11.69 6.92 45.83 4.45
37 38 1.889545 AGCTTCAGCCACTTCAAGAC 58.110 50.000 0.00 0.00 43.38 3.01
76 78 0.942252 GACGGTTTGACACACTTCCC 59.058 55.000 0.00 0.00 0.00 3.97
82 84 2.353269 GTCACATTGACGGTTTGACACA 59.647 45.455 0.00 0.00 37.67 3.72
83 85 2.981875 GTCACATTGACGGTTTGACAC 58.018 47.619 0.00 0.00 37.67 3.67
99 116 0.109504 GAGAGGCAGTCAGACGTCAC 60.110 60.000 19.50 8.21 0.00 3.67
102 119 1.857318 CGTGAGAGGCAGTCAGACGT 61.857 60.000 0.00 0.00 30.91 4.34
106 123 1.214062 GGACGTGAGAGGCAGTCAG 59.786 63.158 0.00 0.00 35.49 3.51
116 133 7.923344 AGTATTAGATTTGATTCTGGACGTGAG 59.077 37.037 0.00 0.00 0.00 3.51
120 137 7.923344 ACTGAGTATTAGATTTGATTCTGGACG 59.077 37.037 0.00 0.00 0.00 4.79
135 156 9.729023 CTAATCTTGAGTGACACTGAGTATTAG 57.271 37.037 14.14 15.78 0.00 1.73
142 163 3.055819 GCCCTAATCTTGAGTGACACTGA 60.056 47.826 14.14 0.34 0.00 3.41
147 168 1.473434 CGGGCCCTAATCTTGAGTGAC 60.473 57.143 22.43 0.00 0.00 3.67
164 185 3.338249 ACTTGACATCAGAAATCACGGG 58.662 45.455 0.00 0.00 0.00 5.28
174 195 4.680567 CAGATGCGAGATACTTGACATCAG 59.319 45.833 17.02 10.59 34.24 2.90
217 238 2.254546 AACCATGCTTGACACGAAGA 57.745 45.000 0.22 0.00 0.00 2.87
268 289 6.869421 AATAATTTACAACATGTTCGCAGC 57.131 33.333 8.48 0.00 0.00 5.25
298 583 2.806945 ACATTCCGGAATCACACCAT 57.193 45.000 26.95 1.19 0.00 3.55
403 688 3.078594 AGCGTGTTTTAGCTTGTTTGG 57.921 42.857 0.00 0.00 41.52 3.28
413 698 4.673061 CGGGATGCATTTAAGCGTGTTTTA 60.673 41.667 0.00 0.00 37.31 1.52
420 705 2.719798 CTTTCGGGATGCATTTAAGCG 58.280 47.619 0.00 0.00 37.31 4.68
422 707 2.689983 AGGCTTTCGGGATGCATTTAAG 59.310 45.455 0.00 2.09 0.00 1.85
423 708 2.733956 AGGCTTTCGGGATGCATTTAA 58.266 42.857 0.00 0.00 0.00 1.52
424 709 2.426738 CAAGGCTTTCGGGATGCATTTA 59.573 45.455 0.00 0.00 31.14 1.40
429 714 2.491621 GCAAGGCTTTCGGGATGC 59.508 61.111 0.00 0.00 0.00 3.91
433 718 4.676951 TGGGGCAAGGCTTTCGGG 62.677 66.667 0.00 0.00 0.00 5.14
434 719 2.206536 TTTGGGGCAAGGCTTTCGG 61.207 57.895 0.00 0.00 0.00 4.30
435 720 1.006220 GTTTGGGGCAAGGCTTTCG 60.006 57.895 0.00 0.00 0.00 3.46
572 906 0.986019 ATAATGTGAGGGGCGTGGGA 60.986 55.000 0.00 0.00 0.00 4.37
1123 1525 4.140924 AGACTTCCAAGAACCCCAAGAAAT 60.141 41.667 0.00 0.00 0.00 2.17
1660 3660 6.092122 CCGCATTTTACAGACAACAAGATAGA 59.908 38.462 0.00 0.00 0.00 1.98
1693 3838 0.535335 TAATCAGGCCACGACCTCAC 59.465 55.000 5.01 0.00 38.26 3.51
1746 3891 4.727507 TTGAGAGAGGAAGCTCATACAC 57.272 45.455 0.00 0.00 40.51 2.90
2018 4173 5.484998 AGCCAATGGGATTAACAAACAAGAT 59.515 36.000 0.00 0.00 35.59 2.40
2478 5462 5.948162 ACCAGCATGTATAATCCCATCATTC 59.052 40.000 0.00 0.00 0.00 2.67
2562 5547 7.148934 GGGAAAACGTATTTTAAAATGTGACGG 60.149 37.037 26.35 15.25 38.17 4.79
2563 5548 7.378995 TGGGAAAACGTATTTTAAAATGTGACG 59.621 33.333 23.42 23.42 38.17 4.35
2586 5574 8.279970 TCAAATTACACTGATTAGAACATGGG 57.720 34.615 0.00 0.00 0.00 4.00
2891 5895 0.036732 TCCTCATGTGTGTCTTGCCC 59.963 55.000 0.00 0.00 0.00 5.36
3035 6073 4.853468 TTATCCCTCACAGGCATGTTTA 57.147 40.909 0.00 0.00 37.65 2.01
3036 6074 3.737559 TTATCCCTCACAGGCATGTTT 57.262 42.857 0.00 0.00 37.65 2.83
3055 6105 7.304497 AGTGTACTGTAACCTGAAGAGAATT 57.696 36.000 0.00 0.00 0.00 2.17
3085 6137 4.229639 AGATAGTGAGATGCCAGATCCAA 58.770 43.478 0.00 0.00 0.00 3.53
3246 6315 6.511416 TGTTGCTGTTGTTATTGCAAGTAAT 58.489 32.000 4.94 0.00 44.48 1.89
3457 6569 8.922676 GTGGATAATCATTACACATAGGTTACG 58.077 37.037 0.00 0.00 32.58 3.18
3615 6754 6.052360 TGCATTCGGCTACAATACTTTGATA 58.948 36.000 0.00 0.00 45.15 2.15
3741 6883 8.170730 ACAGAAGGAAATATAAGTTCAAGGGTT 58.829 33.333 2.89 0.00 0.00 4.11
3829 6979 3.490078 GCGAGCATATCCAGATAGCTACC 60.490 52.174 0.00 0.00 32.18 3.18
4350 7578 3.885484 ACAGAAGAAGAATGCACAACG 57.115 42.857 0.00 0.00 0.00 4.10
4469 7736 6.906157 AACAAGTTGGAATGTGATCTGATT 57.094 33.333 7.96 0.00 0.00 2.57
4510 7777 8.613060 TCAAGAATGGATATGATTAGAACTGC 57.387 34.615 0.00 0.00 0.00 4.40
4659 7984 8.455903 AGAAATAATGCTGCACAAGTATATGT 57.544 30.769 3.57 0.00 29.98 2.29
4810 8143 6.615264 TTGTACTTCTACCGAGCTAGTATG 57.385 41.667 0.00 0.00 0.00 2.39
4965 8444 1.421268 AGAGTCCATGGCAGTGTCAAA 59.579 47.619 6.96 0.00 0.00 2.69
4985 8464 8.437742 GCTGTAGCTTTTTACAAGACGTTTATA 58.562 33.333 0.00 0.00 38.21 0.98
4986 8465 7.295930 GCTGTAGCTTTTTACAAGACGTTTAT 58.704 34.615 0.00 0.00 38.21 1.40
5011 8490 6.017605 CCTTCTCATCATTTGAATTACTCCCG 60.018 42.308 0.00 0.00 32.78 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.