Multiple sequence alignment - TraesCS3D01G460400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G460400 chr3D 100.000 6404 0 0 834 7237 565441036 565434633 0.000000e+00 11827.0
1 TraesCS3D01G460400 chr3D 100.000 415 0 0 1 415 565441869 565441455 0.000000e+00 767.0
2 TraesCS3D01G460400 chr3B 93.411 3612 122 30 836 4368 752642054 752645628 0.000000e+00 5245.0
3 TraesCS3D01G460400 chr3B 91.333 1973 100 20 5135 7074 752646395 752648329 0.000000e+00 2630.0
4 TraesCS3D01G460400 chr3B 94.290 718 24 6 4428 5130 752645647 752646362 0.000000e+00 1083.0
5 TraesCS3D01G460400 chr3B 85.930 199 5 5 221 396 752641160 752641358 2.660000e-44 191.0
6 TraesCS3D01G460400 chr3B 92.308 117 8 1 7072 7188 752655826 752655941 1.620000e-36 165.0
7 TraesCS3D01G460400 chr3B 100.000 32 0 0 1236 1267 116688357 116688326 7.840000e-05 60.2
8 TraesCS3D01G460400 chr3A 95.874 1139 31 1 1729 2851 699623090 699621952 0.000000e+00 1829.0
9 TraesCS3D01G460400 chr3A 97.100 862 23 1 5124 5983 699620016 699619155 0.000000e+00 1452.0
10 TraesCS3D01G460400 chr3A 96.987 697 17 3 4428 5122 699620827 699620133 0.000000e+00 1168.0
11 TraesCS3D01G460400 chr3A 95.058 688 22 4 3686 4368 699621526 699620846 0.000000e+00 1072.0
12 TraesCS3D01G460400 chr3A 94.340 583 26 5 5974 6550 699618171 699617590 0.000000e+00 887.0
13 TraesCS3D01G460400 chr3A 86.618 680 51 14 6538 7183 699617577 699616904 0.000000e+00 715.0
14 TraesCS3D01G460400 chr3A 91.171 521 24 10 836 1344 699623919 699623409 0.000000e+00 688.0
15 TraesCS3D01G460400 chr3A 94.349 407 14 3 2853 3259 699621921 699621524 3.710000e-172 616.0
16 TraesCS3D01G460400 chr3A 94.180 189 9 1 228 414 699624313 699624125 3.300000e-73 287.0
17 TraesCS3D01G460400 chr3A 83.099 71 10 2 1232 1301 83251169 83251100 6.060000e-06 63.9
18 TraesCS3D01G460400 chr3A 100.000 32 0 0 1238 1269 82877537 82877506 7.840000e-05 60.2
19 TraesCS3D01G460400 chr5B 91.588 1058 59 14 1232 2276 5155863 5154823 0.000000e+00 1434.0
20 TraesCS3D01G460400 chr5B 94.699 415 22 0 2306 2720 5154483 5154069 0.000000e+00 645.0
21 TraesCS3D01G460400 chr5B 92.634 448 24 2 2853 3300 5153942 5153504 2.850000e-178 636.0
22 TraesCS3D01G460400 chr5B 95.745 94 4 0 2751 2844 5154073 5153980 1.260000e-32 152.0
23 TraesCS3D01G460400 chr5B 92.857 56 4 0 3782 3837 533436924 533436979 1.670000e-11 82.4
24 TraesCS3D01G460400 chr5B 100.000 40 0 0 2268 2307 5154815 5154776 2.800000e-09 75.0
25 TraesCS3D01G460400 chr7D 76.966 178 31 6 14 189 41034303 41034472 7.730000e-15 93.5
26 TraesCS3D01G460400 chr7D 89.552 67 6 1 14 80 599161410 599161475 4.650000e-12 84.2
27 TraesCS3D01G460400 chr5D 89.552 67 6 1 14 80 445829059 445828994 4.650000e-12 84.2
28 TraesCS3D01G460400 chr7A 75.843 178 33 6 14 189 55574614 55574783 1.670000e-11 82.4
29 TraesCS3D01G460400 chr4B 94.118 51 2 1 30 80 545488558 545488509 7.790000e-10 76.8
30 TraesCS3D01G460400 chr2D 100.000 29 0 0 1239 1267 506772515 506772543 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G460400 chr3D 565434633 565441869 7236 True 6297.000000 11827 100.000000 1 7237 2 chr3D.!!$R1 7236
1 TraesCS3D01G460400 chr3B 752641160 752648329 7169 False 2287.250000 5245 91.241000 221 7074 4 chr3B.!!$F2 6853
2 TraesCS3D01G460400 chr3A 699616904 699624313 7409 True 968.222222 1829 93.964111 228 7183 9 chr3A.!!$R3 6955
3 TraesCS3D01G460400 chr5B 5153504 5155863 2359 True 588.400000 1434 94.933200 1232 3300 5 chr5B.!!$R1 2068

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.179004 AACCACCGACATGGCAAGAA 60.179 50.000 0.00 0.00 44.33 2.52 F
144 145 0.240945 CCACCGACATGGCAAGAAAC 59.759 55.000 0.00 0.00 43.94 2.78 F
2012 2357 0.392193 CAAGAGGAGCTTGCACCGAT 60.392 55.000 3.60 0.00 46.67 4.18 F
2068 2413 0.615850 GCTACTGAAGGGCAAGACCT 59.384 55.000 0.00 0.00 44.56 3.85 F
3550 4237 1.001974 TCAAGGCTGTTAGTCATGCGT 59.998 47.619 0.00 0.00 0.00 5.24 F
4389 5082 0.037046 AAAAGGCGTGGTAGTACCCG 60.037 55.000 16.91 18.65 37.50 5.28 F
5783 6607 0.041090 ACCCAGGGAATGCCGAAATT 59.959 50.000 14.54 0.00 33.83 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1625 1957 0.396435 ATCGTTGGAGCAGGTCAACA 59.604 50.000 1.20 0.00 42.22 3.33 R
2027 2372 1.670811 GCAATATGAAGTGGTGTCCCG 59.329 52.381 0.00 0.00 0.00 5.14 R
2833 3488 0.250467 ATACAGGACGGCATGCCATC 60.250 55.000 34.93 29.96 35.37 3.51 R
3554 4241 1.141657 ACCAGCGCATGTCCTAATGAT 59.858 47.619 11.47 0.00 0.00 2.45 R
4394 5087 0.042131 AGGATAAGTGGGTGTCGGGA 59.958 55.000 0.00 0.00 0.00 5.14 R
6231 8062 0.460284 GCTGGGTGTATCGGTCACTG 60.460 60.000 0.00 0.00 36.25 3.66 R
6607 8470 0.107263 TGCCTTTGCTGAGTGTGTGA 60.107 50.000 0.00 0.00 38.71 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.835284 TGGCAAATACAGTAGATGTCCA 57.165 40.909 0.00 7.12 42.70 4.02
23 24 5.172687 TGGCAAATACAGTAGATGTCCAA 57.827 39.130 0.00 0.00 42.70 3.53
24 25 4.941263 TGGCAAATACAGTAGATGTCCAAC 59.059 41.667 0.00 0.00 42.70 3.77
25 26 4.034048 GGCAAATACAGTAGATGTCCAACG 59.966 45.833 0.00 0.00 42.70 4.10
26 27 4.630069 GCAAATACAGTAGATGTCCAACGT 59.370 41.667 0.00 0.00 42.70 3.99
27 28 5.808540 GCAAATACAGTAGATGTCCAACGTA 59.191 40.000 0.00 0.00 42.70 3.57
28 29 6.479001 GCAAATACAGTAGATGTCCAACGTAT 59.521 38.462 0.00 0.00 42.70 3.06
29 30 7.011109 GCAAATACAGTAGATGTCCAACGTATT 59.989 37.037 0.00 0.00 42.70 1.89
30 31 8.879759 CAAATACAGTAGATGTCCAACGTATTT 58.120 33.333 0.00 0.00 42.70 1.40
31 32 9.444600 AAATACAGTAGATGTCCAACGTATTTT 57.555 29.630 0.00 0.00 42.70 1.82
32 33 6.721571 ACAGTAGATGTCCAACGTATTTTG 57.278 37.500 0.00 0.00 37.75 2.44
33 34 6.228258 ACAGTAGATGTCCAACGTATTTTGT 58.772 36.000 0.00 0.00 37.75 2.83
34 35 6.367969 ACAGTAGATGTCCAACGTATTTTGTC 59.632 38.462 0.00 0.00 37.75 3.18
35 36 6.590292 CAGTAGATGTCCAACGTATTTTGTCT 59.410 38.462 0.00 0.00 0.00 3.41
36 37 7.758076 CAGTAGATGTCCAACGTATTTTGTCTA 59.242 37.037 0.00 0.00 0.00 2.59
37 38 8.475639 AGTAGATGTCCAACGTATTTTGTCTAT 58.524 33.333 0.00 0.00 0.00 1.98
38 39 9.095065 GTAGATGTCCAACGTATTTTGTCTATT 57.905 33.333 0.00 0.00 0.00 1.73
39 40 8.197988 AGATGTCCAACGTATTTTGTCTATTC 57.802 34.615 0.00 0.00 0.00 1.75
40 41 6.730960 TGTCCAACGTATTTTGTCTATTCC 57.269 37.500 0.00 0.00 0.00 3.01
41 42 6.469410 TGTCCAACGTATTTTGTCTATTCCT 58.531 36.000 0.00 0.00 0.00 3.36
42 43 6.938030 TGTCCAACGTATTTTGTCTATTCCTT 59.062 34.615 0.00 0.00 0.00 3.36
43 44 7.446013 TGTCCAACGTATTTTGTCTATTCCTTT 59.554 33.333 0.00 0.00 0.00 3.11
44 45 7.749126 GTCCAACGTATTTTGTCTATTCCTTTG 59.251 37.037 0.00 0.00 0.00 2.77
45 46 6.526674 CCAACGTATTTTGTCTATTCCTTTGC 59.473 38.462 0.00 0.00 0.00 3.68
46 47 6.190954 ACGTATTTTGTCTATTCCTTTGCC 57.809 37.500 0.00 0.00 0.00 4.52
47 48 5.944007 ACGTATTTTGTCTATTCCTTTGCCT 59.056 36.000 0.00 0.00 0.00 4.75
48 49 6.128007 ACGTATTTTGTCTATTCCTTTGCCTG 60.128 38.462 0.00 0.00 0.00 4.85
49 50 4.519540 TTTTGTCTATTCCTTTGCCTGC 57.480 40.909 0.00 0.00 0.00 4.85
50 51 3.439857 TTGTCTATTCCTTTGCCTGCT 57.560 42.857 0.00 0.00 0.00 4.24
51 52 2.991250 TGTCTATTCCTTTGCCTGCTC 58.009 47.619 0.00 0.00 0.00 4.26
52 53 2.305635 TGTCTATTCCTTTGCCTGCTCA 59.694 45.455 0.00 0.00 0.00 4.26
53 54 3.054139 TGTCTATTCCTTTGCCTGCTCAT 60.054 43.478 0.00 0.00 0.00 2.90
54 55 3.314635 GTCTATTCCTTTGCCTGCTCATG 59.685 47.826 0.00 0.00 0.00 3.07
55 56 2.519771 ATTCCTTTGCCTGCTCATGA 57.480 45.000 0.00 0.00 0.00 3.07
56 57 1.538047 TTCCTTTGCCTGCTCATGAC 58.462 50.000 0.00 0.00 0.00 3.06
57 58 0.401356 TCCTTTGCCTGCTCATGACA 59.599 50.000 0.00 0.00 0.00 3.58
58 59 1.005097 TCCTTTGCCTGCTCATGACAT 59.995 47.619 0.00 0.00 0.00 3.06
59 60 1.822990 CCTTTGCCTGCTCATGACATT 59.177 47.619 0.00 0.00 0.00 2.71
60 61 2.416836 CCTTTGCCTGCTCATGACATTG 60.417 50.000 0.00 0.00 0.00 2.82
61 62 1.179152 TTGCCTGCTCATGACATTGG 58.821 50.000 0.00 0.00 0.00 3.16
62 63 0.328926 TGCCTGCTCATGACATTGGA 59.671 50.000 0.00 0.00 0.00 3.53
63 64 0.737219 GCCTGCTCATGACATTGGAC 59.263 55.000 0.00 0.00 0.00 4.02
64 65 1.012086 CCTGCTCATGACATTGGACG 58.988 55.000 0.00 0.00 0.00 4.79
65 66 1.405933 CCTGCTCATGACATTGGACGA 60.406 52.381 0.00 0.00 0.00 4.20
66 67 2.558378 CTGCTCATGACATTGGACGAT 58.442 47.619 0.00 0.00 0.00 3.73
67 68 2.941064 CTGCTCATGACATTGGACGATT 59.059 45.455 0.00 0.00 0.00 3.34
68 69 3.346315 TGCTCATGACATTGGACGATTT 58.654 40.909 0.00 0.00 0.00 2.17
69 70 3.758023 TGCTCATGACATTGGACGATTTT 59.242 39.130 0.00 0.00 0.00 1.82
70 71 4.100529 GCTCATGACATTGGACGATTTTG 58.899 43.478 0.00 0.00 0.00 2.44
71 72 4.379813 GCTCATGACATTGGACGATTTTGT 60.380 41.667 0.00 0.00 0.00 2.83
72 73 5.045668 TCATGACATTGGACGATTTTGTG 57.954 39.130 0.00 0.00 0.00 3.33
73 74 3.913548 TGACATTGGACGATTTTGTGG 57.086 42.857 0.00 0.00 0.00 4.17
74 75 2.030363 TGACATTGGACGATTTTGTGGC 60.030 45.455 0.00 0.00 0.00 5.01
75 76 1.959985 ACATTGGACGATTTTGTGGCA 59.040 42.857 0.00 0.00 0.00 4.92
76 77 2.562298 ACATTGGACGATTTTGTGGCAT 59.438 40.909 0.00 0.00 0.00 4.40
77 78 2.721274 TTGGACGATTTTGTGGCATG 57.279 45.000 0.00 0.00 0.00 4.06
78 79 0.887247 TGGACGATTTTGTGGCATGG 59.113 50.000 0.00 0.00 0.00 3.66
79 80 1.173043 GGACGATTTTGTGGCATGGA 58.827 50.000 0.00 0.00 0.00 3.41
80 81 1.133025 GGACGATTTTGTGGCATGGAG 59.867 52.381 0.00 0.00 0.00 3.86
81 82 1.812571 GACGATTTTGTGGCATGGAGT 59.187 47.619 0.00 0.00 0.00 3.85
82 83 2.228822 GACGATTTTGTGGCATGGAGTT 59.771 45.455 0.00 0.00 0.00 3.01
83 84 2.627699 ACGATTTTGTGGCATGGAGTTT 59.372 40.909 0.00 0.00 0.00 2.66
84 85 3.069443 ACGATTTTGTGGCATGGAGTTTT 59.931 39.130 0.00 0.00 0.00 2.43
85 86 4.279671 ACGATTTTGTGGCATGGAGTTTTA 59.720 37.500 0.00 0.00 0.00 1.52
86 87 5.221342 ACGATTTTGTGGCATGGAGTTTTAA 60.221 36.000 0.00 0.00 0.00 1.52
87 88 5.118510 CGATTTTGTGGCATGGAGTTTTAAC 59.881 40.000 0.00 0.00 0.00 2.01
88 89 5.344743 TTTTGTGGCATGGAGTTTTAACA 57.655 34.783 0.00 0.00 0.00 2.41
89 90 5.344743 TTTGTGGCATGGAGTTTTAACAA 57.655 34.783 0.00 0.00 0.00 2.83
90 91 5.344743 TTGTGGCATGGAGTTTTAACAAA 57.655 34.783 0.00 0.00 0.00 2.83
91 92 5.344743 TGTGGCATGGAGTTTTAACAAAA 57.655 34.783 0.00 0.00 0.00 2.44
92 93 5.355596 TGTGGCATGGAGTTTTAACAAAAG 58.644 37.500 0.00 0.00 0.00 2.27
93 94 5.127845 TGTGGCATGGAGTTTTAACAAAAGA 59.872 36.000 0.00 0.00 0.00 2.52
94 95 6.045955 GTGGCATGGAGTTTTAACAAAAGAA 58.954 36.000 0.00 0.00 0.00 2.52
95 96 6.536941 GTGGCATGGAGTTTTAACAAAAGAAA 59.463 34.615 0.00 0.00 0.00 2.52
96 97 7.065204 GTGGCATGGAGTTTTAACAAAAGAAAA 59.935 33.333 0.00 0.00 0.00 2.29
97 98 7.772757 TGGCATGGAGTTTTAACAAAAGAAAAT 59.227 29.630 0.00 0.00 0.00 1.82
98 99 8.069574 GGCATGGAGTTTTAACAAAAGAAAATG 58.930 33.333 0.00 0.00 0.00 2.32
99 100 8.069574 GCATGGAGTTTTAACAAAAGAAAATGG 58.930 33.333 0.00 0.00 0.00 3.16
100 101 9.323985 CATGGAGTTTTAACAAAAGAAAATGGA 57.676 29.630 0.00 0.00 0.00 3.41
102 103 9.898152 TGGAGTTTTAACAAAAGAAAATGGATT 57.102 25.926 0.00 0.00 0.00 3.01
104 105 9.650371 GAGTTTTAACAAAAGAAAATGGATTGC 57.350 29.630 0.00 0.00 0.00 3.56
105 106 9.394767 AGTTTTAACAAAAGAAAATGGATTGCT 57.605 25.926 0.00 0.00 0.00 3.91
106 107 9.650371 GTTTTAACAAAAGAAAATGGATTGCTC 57.350 29.630 0.00 0.00 0.00 4.26
107 108 8.954950 TTTAACAAAAGAAAATGGATTGCTCA 57.045 26.923 0.00 0.00 0.00 4.26
108 109 6.849588 AACAAAAGAAAATGGATTGCTCAC 57.150 33.333 0.00 0.00 0.00 3.51
109 110 5.916318 ACAAAAGAAAATGGATTGCTCACA 58.084 33.333 0.00 0.00 0.00 3.58
110 111 6.527423 ACAAAAGAAAATGGATTGCTCACAT 58.473 32.000 0.00 0.00 0.00 3.21
111 112 6.647895 ACAAAAGAAAATGGATTGCTCACATC 59.352 34.615 0.00 0.00 0.00 3.06
112 113 5.988310 AAGAAAATGGATTGCTCACATCA 57.012 34.783 0.00 0.00 0.00 3.07
113 114 6.540438 AAGAAAATGGATTGCTCACATCAT 57.460 33.333 0.00 0.00 0.00 2.45
114 115 5.902681 AGAAAATGGATTGCTCACATCATG 58.097 37.500 0.00 0.00 0.00 3.07
115 116 5.421056 AGAAAATGGATTGCTCACATCATGT 59.579 36.000 0.00 0.00 0.00 3.21
126 127 2.086869 CACATCATGTGGAGTGGAACC 58.913 52.381 10.22 0.00 44.27 3.62
127 128 1.704628 ACATCATGTGGAGTGGAACCA 59.295 47.619 0.00 0.00 37.80 3.67
136 137 3.981308 GTGGAACCACCGACATGG 58.019 61.111 12.42 0.00 46.10 3.66
137 138 2.033448 TGGAACCACCGACATGGC 59.967 61.111 0.00 0.00 44.33 4.40
138 139 2.033448 GGAACCACCGACATGGCA 59.967 61.111 0.00 0.00 44.33 4.92
139 140 1.602323 GGAACCACCGACATGGCAA 60.602 57.895 0.00 0.00 44.33 4.52
140 141 1.586154 GGAACCACCGACATGGCAAG 61.586 60.000 0.00 0.00 44.33 4.01
141 142 0.605319 GAACCACCGACATGGCAAGA 60.605 55.000 0.00 0.00 44.33 3.02
142 143 0.179004 AACCACCGACATGGCAAGAA 60.179 50.000 0.00 0.00 44.33 2.52
143 144 0.179004 ACCACCGACATGGCAAGAAA 60.179 50.000 0.00 0.00 44.33 2.52
144 145 0.240945 CCACCGACATGGCAAGAAAC 59.759 55.000 0.00 0.00 43.94 2.78
145 146 1.238439 CACCGACATGGCAAGAAACT 58.762 50.000 0.00 0.00 43.94 2.66
146 147 1.069022 CACCGACATGGCAAGAAACTG 60.069 52.381 0.00 0.00 43.94 3.16
147 148 0.523072 CCGACATGGCAAGAAACTGG 59.477 55.000 0.00 0.00 0.00 4.00
148 149 0.523072 CGACATGGCAAGAAACTGGG 59.477 55.000 0.00 0.00 0.00 4.45
149 150 0.890683 GACATGGCAAGAAACTGGGG 59.109 55.000 0.00 0.00 0.00 4.96
150 151 1.187567 ACATGGCAAGAAACTGGGGC 61.188 55.000 0.00 0.00 0.00 5.80
151 152 1.978617 ATGGCAAGAAACTGGGGCG 60.979 57.895 0.00 0.00 0.00 6.13
152 153 2.597510 GGCAAGAAACTGGGGCGT 60.598 61.111 0.00 0.00 0.00 5.68
153 154 1.302993 GGCAAGAAACTGGGGCGTA 60.303 57.895 0.00 0.00 0.00 4.42
154 155 1.583495 GGCAAGAAACTGGGGCGTAC 61.583 60.000 0.00 0.00 0.00 3.67
155 156 0.887387 GCAAGAAACTGGGGCGTACA 60.887 55.000 0.00 0.00 0.00 2.90
156 157 1.600023 CAAGAAACTGGGGCGTACAA 58.400 50.000 0.00 0.00 0.00 2.41
157 158 1.950909 CAAGAAACTGGGGCGTACAAA 59.049 47.619 0.00 0.00 0.00 2.83
158 159 2.556622 CAAGAAACTGGGGCGTACAAAT 59.443 45.455 0.00 0.00 0.00 2.32
159 160 2.159382 AGAAACTGGGGCGTACAAATG 58.841 47.619 0.00 0.00 0.00 2.32
160 161 1.201414 GAAACTGGGGCGTACAAATGG 59.799 52.381 0.00 0.00 0.00 3.16
161 162 0.402504 AACTGGGGCGTACAAATGGA 59.597 50.000 0.00 0.00 0.00 3.41
162 163 0.402504 ACTGGGGCGTACAAATGGAA 59.597 50.000 0.00 0.00 0.00 3.53
163 164 1.005450 ACTGGGGCGTACAAATGGAAT 59.995 47.619 0.00 0.00 0.00 3.01
164 165 2.099405 CTGGGGCGTACAAATGGAATT 58.901 47.619 0.00 0.00 38.98 2.17
165 166 1.821753 TGGGGCGTACAAATGGAATTG 59.178 47.619 0.00 0.00 36.10 2.32
166 167 2.096248 GGGGCGTACAAATGGAATTGA 58.904 47.619 0.00 0.00 36.10 2.57
167 168 2.099098 GGGGCGTACAAATGGAATTGAG 59.901 50.000 0.00 0.00 36.10 3.02
168 169 2.752903 GGGCGTACAAATGGAATTGAGT 59.247 45.455 0.00 0.00 36.10 3.41
169 170 3.181500 GGGCGTACAAATGGAATTGAGTC 60.181 47.826 0.00 0.00 36.10 3.36
170 171 3.181500 GGCGTACAAATGGAATTGAGTCC 60.181 47.826 0.00 0.00 36.10 3.85
178 179 3.786368 TGGAATTGAGTCCATGTGTGA 57.214 42.857 0.00 0.00 42.97 3.58
179 180 4.097551 TGGAATTGAGTCCATGTGTGAA 57.902 40.909 0.00 0.00 42.97 3.18
180 181 4.665451 TGGAATTGAGTCCATGTGTGAAT 58.335 39.130 0.00 0.00 42.97 2.57
181 182 4.460034 TGGAATTGAGTCCATGTGTGAATG 59.540 41.667 0.00 0.00 42.97 2.67
193 194 5.404946 CATGTGTGAATGGAATTTGAGTCC 58.595 41.667 0.00 0.00 36.07 3.85
201 202 4.097551 TGGAATTTGAGTCCATGTGTGA 57.902 40.909 0.00 0.00 40.33 3.58
202 203 4.468713 TGGAATTTGAGTCCATGTGTGAA 58.531 39.130 0.00 0.00 40.33 3.18
203 204 5.078949 TGGAATTTGAGTCCATGTGTGAAT 58.921 37.500 0.00 0.00 40.33 2.57
204 205 5.047872 TGGAATTTGAGTCCATGTGTGAATG 60.048 40.000 0.00 0.00 40.33 2.67
216 217 6.016213 CATGTGTGAATGGAATTTGAGACA 57.984 37.500 0.00 0.00 36.07 3.41
217 218 5.694231 TGTGTGAATGGAATTTGAGACAG 57.306 39.130 0.00 0.00 36.07 3.51
218 219 5.375773 TGTGTGAATGGAATTTGAGACAGA 58.624 37.500 0.00 0.00 36.07 3.41
219 220 6.005823 TGTGTGAATGGAATTTGAGACAGAT 58.994 36.000 0.00 0.00 36.07 2.90
222 223 5.582269 GTGAATGGAATTTGAGACAGATCGA 59.418 40.000 0.00 0.00 36.07 3.59
397 421 1.301623 CCATGTTCCCCGGTAAGCA 59.698 57.895 0.00 0.00 0.00 3.91
414 438 3.532155 ATCGCGGCACCTCCTCTC 61.532 66.667 6.13 0.00 0.00 3.20
854 1134 3.265791 GCCTCTGATTTTCGTGTGATCT 58.734 45.455 0.00 0.00 0.00 2.75
1083 1369 3.199727 GCTCCATCTCTTTCCCTTTCTCT 59.800 47.826 0.00 0.00 0.00 3.10
1221 1513 4.729227 TTCATGCTATGTACGGTGAGAA 57.271 40.909 0.00 0.00 0.00 2.87
1226 1518 2.426024 GCTATGTACGGTGAGAAGGTGA 59.574 50.000 0.00 0.00 0.00 4.02
1609 1937 5.845734 TGAGGGAGGGTATACAGAGTTTTA 58.154 41.667 5.01 0.00 0.00 1.52
1625 1957 6.538381 CAGAGTTTTATTTTTGGCACCAACTT 59.462 34.615 0.45 0.00 35.46 2.66
1646 1978 2.271800 GTTGACCTGCTCCAACGATAG 58.728 52.381 0.00 0.00 46.19 2.08
1717 2052 2.287009 CGTGTTGGAGAAAGGCAGTTTC 60.287 50.000 3.19 3.19 44.48 2.78
1911 2256 3.486875 CGGGAAAGAAATGTATTGTCGCC 60.487 47.826 0.00 0.00 0.00 5.54
1934 2279 5.406175 CCAAAATTGCTTGTCCACTTATGTG 59.594 40.000 1.78 1.78 43.45 3.21
2012 2357 0.392193 CAAGAGGAGCTTGCACCGAT 60.392 55.000 3.60 0.00 46.67 4.18
2027 2372 1.429148 CCGATCCGGTAACTTGCTGC 61.429 60.000 0.00 0.00 42.73 5.25
2068 2413 0.615850 GCTACTGAAGGGCAAGACCT 59.384 55.000 0.00 0.00 44.56 3.85
2117 2462 2.739913 TGCAGATGTAAGTTTACGGCAC 59.260 45.455 0.00 0.00 36.45 5.01
2221 2566 5.871396 ATACGGTTCCATCAGAGTTGTAT 57.129 39.130 0.00 0.00 0.00 2.29
2357 3012 7.310361 CCTCCTTTTTAAGTGCCATTTGGAATA 60.310 37.037 0.00 0.00 37.39 1.75
2486 3141 6.266168 TCTCTCTGCTCTCTCTGTTTTTAG 57.734 41.667 0.00 0.00 0.00 1.85
2517 3172 6.258230 TGCCATGTTAATATTGCTCTATGC 57.742 37.500 9.23 0.00 43.25 3.14
2599 3254 6.316390 AGTGTAGGAACTAACATGCTTAATGC 59.684 38.462 0.00 0.00 45.48 3.56
2618 3273 2.703536 TGCCTCTCTCCAGTACAACAAA 59.296 45.455 0.00 0.00 0.00 2.83
2721 3376 6.810911 TGATAACTTTAACTTTGCTTTGCCA 58.189 32.000 0.00 0.00 0.00 4.92
2769 3424 7.555914 AGGTGTTTTTGCTTCCAACATTTAAAT 59.444 29.630 0.00 0.00 33.15 1.40
2833 3488 4.030134 GTTCGTGACCATAGACTACCAG 57.970 50.000 0.00 0.00 0.00 4.00
2851 3506 1.146041 GATGGCATGCCGTCCTGTA 59.854 57.895 38.62 19.22 44.26 2.74
2896 3580 3.071602 ACTGTGACCATCAACTTAGCTGT 59.928 43.478 0.00 0.00 0.00 4.40
2949 3633 4.496341 CCCAGTACTCAATTAATGCTTGCG 60.496 45.833 0.00 0.00 0.00 4.85
3017 3703 7.909641 CACATAAAAATATGATGCGTGACTGAA 59.090 33.333 3.03 0.00 0.00 3.02
3033 3719 4.344968 TGACTGAAACATCTTGAGGACTGA 59.655 41.667 0.00 0.00 0.00 3.41
3034 3720 5.163311 TGACTGAAACATCTTGAGGACTGAA 60.163 40.000 0.00 0.00 0.00 3.02
3035 3721 5.874093 ACTGAAACATCTTGAGGACTGAAT 58.126 37.500 0.00 0.00 0.00 2.57
3036 3722 5.704515 ACTGAAACATCTTGAGGACTGAATG 59.295 40.000 0.00 0.00 0.00 2.67
3037 3723 5.868454 TGAAACATCTTGAGGACTGAATGA 58.132 37.500 0.00 0.00 0.00 2.57
3038 3724 5.702670 TGAAACATCTTGAGGACTGAATGAC 59.297 40.000 0.00 0.00 0.00 3.06
3039 3725 5.495926 AACATCTTGAGGACTGAATGACT 57.504 39.130 0.00 0.00 0.00 3.41
3040 3726 4.829968 ACATCTTGAGGACTGAATGACTG 58.170 43.478 0.00 0.00 0.00 3.51
3054 3740 8.697507 ACTGAATGACTGATTAACTTTTTCCT 57.302 30.769 0.00 0.00 0.00 3.36
3090 3776 5.954752 TGGTGTTGCCAATGGAGATTTTATA 59.045 36.000 2.05 0.00 45.94 0.98
3192 3878 6.018262 GGCATGCTCGTAATGATGTAAGTAAA 60.018 38.462 18.92 0.00 0.00 2.01
3284 3970 5.412526 TTCAACTTACAACGGTGATGTTC 57.587 39.130 7.88 0.00 32.27 3.18
3310 3996 2.965831 TCCTCCATATCTCTTTCCACCG 59.034 50.000 0.00 0.00 0.00 4.94
3336 4023 9.353999 GGTGTTTTGGAATGAGTTTATAATGAC 57.646 33.333 0.00 0.00 0.00 3.06
3472 4159 6.682746 TGTCAGTTCATTCAGTTAGAGTCTC 58.317 40.000 0.00 0.00 0.00 3.36
3538 4225 2.540265 AACTGAGTCAGTCAAGGCTG 57.460 50.000 25.64 0.00 44.62 4.85
3550 4237 1.001974 TCAAGGCTGTTAGTCATGCGT 59.998 47.619 0.00 0.00 0.00 5.24
3554 4241 1.404181 GGCTGTTAGTCATGCGTCTGA 60.404 52.381 0.00 0.00 0.00 3.27
3565 4252 3.384467 TCATGCGTCTGATCATTAGGACA 59.616 43.478 11.92 5.89 0.00 4.02
3572 4259 2.479275 CTGATCATTAGGACATGCGCTG 59.521 50.000 9.73 7.16 0.00 5.18
3591 4278 1.254954 GGTCTATAGGGCCACTACGG 58.745 60.000 6.18 1.04 33.70 4.02
3740 4427 4.280929 AGGAAATTGCCAAACCAGAAGTAC 59.719 41.667 4.92 0.00 0.00 2.73
3744 4431 2.422597 TGCCAAACCAGAAGTACGATG 58.577 47.619 0.00 0.00 0.00 3.84
3838 4525 7.446625 TCAACTTTAGTACGGAGGGAGTATATC 59.553 40.741 0.00 0.00 0.00 1.63
4045 4733 1.542492 CAGCATGGCTCCTCAAGTTT 58.458 50.000 0.00 0.00 36.40 2.66
4052 4740 4.568072 TGGCTCCTCAAGTTTGCTAATA 57.432 40.909 0.00 0.00 0.00 0.98
4065 4753 6.447162 AGTTTGCTAATAACTTGGCTCAAAC 58.553 36.000 0.00 0.00 39.43 2.93
4238 4931 3.684788 GTGCAGTAAAGGTAGGTCATGTG 59.315 47.826 0.00 0.00 0.00 3.21
4251 4944 6.761714 GGTAGGTCATGTGAATGTAGTAAAGG 59.238 42.308 0.00 0.00 0.00 3.11
4257 4950 7.822822 GTCATGTGAATGTAGTAAAGGTAGGTT 59.177 37.037 0.00 0.00 0.00 3.50
4368 5061 2.100605 AGGCGTGAATCAGGAGAAAC 57.899 50.000 7.17 0.00 0.00 2.78
4369 5062 0.721718 GGCGTGAATCAGGAGAAACG 59.278 55.000 7.17 0.00 34.35 3.60
4371 5064 2.066262 GCGTGAATCAGGAGAAACGAA 58.934 47.619 7.17 0.00 33.57 3.85
4372 5065 2.478894 GCGTGAATCAGGAGAAACGAAA 59.521 45.455 7.17 0.00 33.57 3.46
4373 5066 3.059188 GCGTGAATCAGGAGAAACGAAAA 60.059 43.478 7.17 0.00 33.57 2.29
4374 5067 4.702392 CGTGAATCAGGAGAAACGAAAAG 58.298 43.478 0.00 0.00 33.57 2.27
4375 5068 4.377431 CGTGAATCAGGAGAAACGAAAAGG 60.377 45.833 0.00 0.00 33.57 3.11
4376 5069 3.502211 TGAATCAGGAGAAACGAAAAGGC 59.498 43.478 0.00 0.00 0.00 4.35
4377 5070 1.508632 TCAGGAGAAACGAAAAGGCG 58.491 50.000 0.00 0.00 37.29 5.52
4380 5073 0.237498 GGAGAAACGAAAAGGCGTGG 59.763 55.000 0.00 0.00 44.86 4.94
4381 5074 0.942252 GAGAAACGAAAAGGCGTGGT 59.058 50.000 0.00 0.00 44.86 4.16
4382 5075 2.137523 GAGAAACGAAAAGGCGTGGTA 58.862 47.619 0.00 0.00 44.86 3.25
4383 5076 2.140717 AGAAACGAAAAGGCGTGGTAG 58.859 47.619 0.00 0.00 44.86 3.18
4384 5077 1.869132 GAAACGAAAAGGCGTGGTAGT 59.131 47.619 0.00 0.00 44.86 2.73
4385 5078 2.818130 AACGAAAAGGCGTGGTAGTA 57.182 45.000 0.00 0.00 44.86 1.82
4386 5079 2.070262 ACGAAAAGGCGTGGTAGTAC 57.930 50.000 0.00 0.00 43.79 2.73
4387 5080 1.337167 ACGAAAAGGCGTGGTAGTACC 60.337 52.381 12.80 12.80 43.79 3.34
4388 5081 1.730501 GAAAAGGCGTGGTAGTACCC 58.269 55.000 16.91 7.24 37.50 3.69
4389 5082 0.037046 AAAAGGCGTGGTAGTACCCG 60.037 55.000 16.91 18.65 37.50 5.28
4390 5083 1.891722 AAAGGCGTGGTAGTACCCGG 61.892 60.000 23.22 14.46 37.50 5.73
4391 5084 3.841758 GGCGTGGTAGTACCCGGG 61.842 72.222 22.25 22.25 37.50 5.73
4392 5085 3.841758 GCGTGGTAGTACCCGGGG 61.842 72.222 27.92 12.73 37.50 5.73
4393 5086 3.149648 CGTGGTAGTACCCGGGGG 61.150 72.222 27.92 5.70 37.50 5.40
4409 5102 3.795905 GGTCCCGACACCCACTTA 58.204 61.111 0.00 0.00 0.00 2.24
4410 5103 2.293877 GGTCCCGACACCCACTTAT 58.706 57.895 0.00 0.00 0.00 1.73
4411 5104 0.177373 GGTCCCGACACCCACTTATC 59.823 60.000 0.00 0.00 0.00 1.75
4412 5105 0.177373 GTCCCGACACCCACTTATCC 59.823 60.000 0.00 0.00 0.00 2.59
4413 5106 0.042131 TCCCGACACCCACTTATCCT 59.958 55.000 0.00 0.00 0.00 3.24
4414 5107 1.288633 TCCCGACACCCACTTATCCTA 59.711 52.381 0.00 0.00 0.00 2.94
4415 5108 2.090943 TCCCGACACCCACTTATCCTAT 60.091 50.000 0.00 0.00 0.00 2.57
4416 5109 2.299297 CCCGACACCCACTTATCCTATC 59.701 54.545 0.00 0.00 0.00 2.08
4417 5110 3.231818 CCGACACCCACTTATCCTATCT 58.768 50.000 0.00 0.00 0.00 1.98
4418 5111 3.005897 CCGACACCCACTTATCCTATCTG 59.994 52.174 0.00 0.00 0.00 2.90
4419 5112 3.637229 CGACACCCACTTATCCTATCTGT 59.363 47.826 0.00 0.00 0.00 3.41
4420 5113 4.261656 CGACACCCACTTATCCTATCTGTC 60.262 50.000 0.00 0.00 0.00 3.51
4421 5114 4.884961 ACACCCACTTATCCTATCTGTCT 58.115 43.478 0.00 0.00 0.00 3.41
4422 5115 4.651503 ACACCCACTTATCCTATCTGTCTG 59.348 45.833 0.00 0.00 0.00 3.51
4423 5116 3.643792 ACCCACTTATCCTATCTGTCTGC 59.356 47.826 0.00 0.00 0.00 4.26
4424 5117 3.643320 CCCACTTATCCTATCTGTCTGCA 59.357 47.826 0.00 0.00 0.00 4.41
4425 5118 4.502259 CCCACTTATCCTATCTGTCTGCAC 60.502 50.000 0.00 0.00 0.00 4.57
4426 5119 4.502259 CCACTTATCCTATCTGTCTGCACC 60.502 50.000 0.00 0.00 0.00 5.01
4439 5132 3.745975 TGTCTGCACCTACAAATTTCTCG 59.254 43.478 0.00 0.00 0.00 4.04
4824 5519 8.149973 TCCTTAGAATTATTATGCGTTCCAAC 57.850 34.615 0.00 0.00 0.00 3.77
4995 5701 2.481952 GGCATCATATTTCTCAGCGTCC 59.518 50.000 0.00 0.00 0.00 4.79
5151 5974 6.073440 ACTGTACGTATGTTTTAAAGTGCAGG 60.073 38.462 18.46 7.17 43.27 4.85
5211 6034 9.350357 CGCTTAAGTGTTACAGAAGAAGTATAA 57.650 33.333 7.91 0.00 0.00 0.98
5522 6346 2.440409 CTTTGCTGGCTTCACATAGGT 58.560 47.619 0.00 0.00 0.00 3.08
5777 6601 1.152673 GATGGACCCAGGGAATGCC 60.153 63.158 14.54 8.48 0.00 4.40
5783 6607 0.041090 ACCCAGGGAATGCCGAAATT 59.959 50.000 14.54 0.00 33.83 1.82
5819 6643 5.011840 GCGGTATTACCCTATCTTTCCTTCT 59.988 44.000 7.29 0.00 33.75 2.85
5957 6788 4.344390 AGGATTAGACCTGTATCCCGTTTC 59.656 45.833 0.00 0.00 38.89 2.78
5963 6794 3.408634 ACCTGTATCCCGTTTCAAGTTG 58.591 45.455 0.00 0.00 0.00 3.16
5999 7828 4.421948 AGGAAGCATCGACGTTTACTTAG 58.578 43.478 0.00 0.00 0.00 2.18
6179 8010 6.172136 AGCATAGCTCTAACAGTTCATGAT 57.828 37.500 0.00 0.00 30.62 2.45
6231 8062 1.228552 TCTCAAAGCACCAAGGCCC 60.229 57.895 0.00 0.00 0.00 5.80
6239 8070 3.953775 ACCAAGGCCCAGTGACCG 61.954 66.667 0.00 0.00 0.00 4.79
6252 8083 1.108776 GTGACCGATACACCCAGCTA 58.891 55.000 0.00 0.00 32.84 3.32
6254 8085 2.093869 GTGACCGATACACCCAGCTAAA 60.094 50.000 0.00 0.00 32.84 1.85
6357 8188 6.830838 GGAAAGATACATGGACTTCTTGGATT 59.169 38.462 0.00 0.00 0.00 3.01
6359 8190 9.396022 GAAAGATACATGGACTTCTTGGATTTA 57.604 33.333 0.00 0.00 0.00 1.40
6361 8192 9.566432 AAGATACATGGACTTCTTGGATTTATC 57.434 33.333 0.00 0.00 0.00 1.75
6509 8346 0.608640 AGAAAGGTGTGGTAGCTCCG 59.391 55.000 0.00 0.00 39.52 4.63
6603 8466 5.778862 ACGTTTTAGGTGCTTGCAAATTAT 58.221 33.333 0.00 0.00 0.00 1.28
6604 8467 5.633182 ACGTTTTAGGTGCTTGCAAATTATG 59.367 36.000 0.00 0.00 0.00 1.90
6607 8470 5.736951 TTAGGTGCTTGCAAATTATGGTT 57.263 34.783 0.00 0.00 0.00 3.67
6681 8544 2.177394 TATTTTGCTCGGTCTGCACA 57.823 45.000 0.00 0.00 40.40 4.57
6684 8547 1.159713 TTTGCTCGGTCTGCACAGTG 61.160 55.000 0.00 0.00 40.40 3.66
6695 8558 3.124297 GTCTGCACAGTGATAACAGCTTC 59.876 47.826 4.15 0.00 0.00 3.86
6701 8564 2.286294 CAGTGATAACAGCTTCGATGCC 59.714 50.000 18.70 4.13 0.00 4.40
6732 8595 4.700213 AGTTTGGCGATTATTGTTGCTAGT 59.300 37.500 0.00 0.00 0.00 2.57
6762 8625 9.846248 GCTATTATAATTGTTTGATTGCTAGGG 57.154 33.333 2.68 0.00 0.00 3.53
6783 8646 4.827284 GGGTATGGTGGGTTTAGATGATTG 59.173 45.833 0.00 0.00 0.00 2.67
6792 8655 7.444487 GGTGGGTTTAGATGATTGGTATAGTTC 59.556 40.741 0.00 0.00 0.00 3.01
6960 8839 9.238368 TCGGTGATTGAATTTACCTTTCTAAAT 57.762 29.630 9.75 0.00 0.00 1.40
6980 8859 9.529325 TCTAAATGTTAATCACCTAATCACTCG 57.471 33.333 0.00 0.00 0.00 4.18
6995 8874 2.159240 TCACTCGACATGCCACATCTAC 60.159 50.000 0.00 0.00 0.00 2.59
7007 8886 5.129634 TGCCACATCTACAAGTTTCTTTGA 58.870 37.500 0.00 0.00 0.00 2.69
7019 8898 4.130118 AGTTTCTTTGAATCAGCGTGACT 58.870 39.130 0.00 0.00 0.00 3.41
7027 8906 2.433838 CAGCGTGACTGGCTCCTG 60.434 66.667 0.00 0.00 43.19 3.86
7028 8907 2.601666 AGCGTGACTGGCTCCTGA 60.602 61.111 0.00 0.00 35.37 3.86
7030 8909 1.739562 GCGTGACTGGCTCCTGAAG 60.740 63.158 0.00 0.00 0.00 3.02
7031 8910 1.668294 CGTGACTGGCTCCTGAAGT 59.332 57.895 0.00 0.00 0.00 3.01
7048 8945 5.860182 CCTGAAGTGTATCAAGCATGTTTTG 59.140 40.000 0.00 0.00 0.00 2.44
7104 9002 6.442961 TGGGGAATTAATCATTCTTCCATGT 58.557 36.000 11.82 0.00 41.22 3.21
7105 9003 6.550854 TGGGGAATTAATCATTCTTCCATGTC 59.449 38.462 11.82 2.49 41.22 3.06
7138 9036 8.822805 AGGATAATAAAACAGTACAGTTGGAGA 58.177 33.333 4.23 0.00 0.00 3.71
7179 9077 4.133078 AGTTTGCTGAAGGAGAAGAGTTG 58.867 43.478 0.00 0.00 0.00 3.16
7183 9081 3.244009 TGCTGAAGGAGAAGAGTTGTCAG 60.244 47.826 0.00 0.00 35.28 3.51
7184 9082 3.324993 CTGAAGGAGAAGAGTTGTCAGC 58.675 50.000 0.00 0.00 0.00 4.26
7185 9083 2.968574 TGAAGGAGAAGAGTTGTCAGCT 59.031 45.455 0.00 0.00 0.00 4.24
7186 9084 3.389329 TGAAGGAGAAGAGTTGTCAGCTT 59.611 43.478 0.00 0.00 0.00 3.74
7187 9085 4.141620 TGAAGGAGAAGAGTTGTCAGCTTT 60.142 41.667 0.00 0.00 0.00 3.51
7188 9086 4.429854 AGGAGAAGAGTTGTCAGCTTTT 57.570 40.909 0.00 0.00 0.00 2.27
7189 9087 5.552870 AGGAGAAGAGTTGTCAGCTTTTA 57.447 39.130 0.00 0.00 0.00 1.52
7190 9088 5.546526 AGGAGAAGAGTTGTCAGCTTTTAG 58.453 41.667 0.00 0.00 0.00 1.85
7191 9089 4.153296 GGAGAAGAGTTGTCAGCTTTTAGC 59.847 45.833 0.00 0.00 42.84 3.09
7217 9115 9.899661 CTATAGTAGCTCACCAGATTACTCTAT 57.100 37.037 0.00 0.00 30.97 1.98
7218 9116 8.801882 ATAGTAGCTCACCAGATTACTCTATC 57.198 38.462 0.00 0.00 30.97 2.08
7219 9117 6.606069 AGTAGCTCACCAGATTACTCTATCA 58.394 40.000 0.00 0.00 0.00 2.15
7220 9118 7.237982 AGTAGCTCACCAGATTACTCTATCAT 58.762 38.462 0.00 0.00 0.00 2.45
7221 9119 6.343716 AGCTCACCAGATTACTCTATCATG 57.656 41.667 0.00 0.00 0.00 3.07
7222 9120 6.073981 AGCTCACCAGATTACTCTATCATGA 58.926 40.000 0.00 0.00 0.00 3.07
7223 9121 6.552725 AGCTCACCAGATTACTCTATCATGAA 59.447 38.462 0.00 0.00 0.00 2.57
7224 9122 7.070447 AGCTCACCAGATTACTCTATCATGAAA 59.930 37.037 0.00 0.00 0.00 2.69
7225 9123 7.712639 GCTCACCAGATTACTCTATCATGAAAA 59.287 37.037 0.00 0.00 0.00 2.29
7226 9124 9.605275 CTCACCAGATTACTCTATCATGAAAAA 57.395 33.333 0.00 0.00 0.00 1.94
7227 9125 9.383519 TCACCAGATTACTCTATCATGAAAAAC 57.616 33.333 0.00 0.00 0.00 2.43
7228 9126 9.166173 CACCAGATTACTCTATCATGAAAAACA 57.834 33.333 0.00 0.00 0.00 2.83
7229 9127 9.167311 ACCAGATTACTCTATCATGAAAAACAC 57.833 33.333 0.00 0.00 0.00 3.32
7230 9128 8.616076 CCAGATTACTCTATCATGAAAAACACC 58.384 37.037 0.00 0.00 0.00 4.16
7231 9129 8.616076 CAGATTACTCTATCATGAAAAACACCC 58.384 37.037 0.00 0.00 0.00 4.61
7232 9130 8.552296 AGATTACTCTATCATGAAAAACACCCT 58.448 33.333 0.00 0.00 0.00 4.34
7233 9131 7.921786 TTACTCTATCATGAAAAACACCCTG 57.078 36.000 0.00 0.00 0.00 4.45
7234 9132 5.256474 ACTCTATCATGAAAAACACCCTGG 58.744 41.667 0.00 0.00 0.00 4.45
7235 9133 4.599041 TCTATCATGAAAAACACCCTGGG 58.401 43.478 12.28 12.28 0.00 4.45
7236 9134 2.765689 TCATGAAAAACACCCTGGGT 57.234 45.000 14.05 14.05 35.62 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.172687 TGGACATCTACTGTATTTGCCAA 57.827 39.130 0.00 0.00 38.54 4.52
1 2 4.835284 TGGACATCTACTGTATTTGCCA 57.165 40.909 0.00 0.00 38.54 4.92
2 3 4.034048 CGTTGGACATCTACTGTATTTGCC 59.966 45.833 0.00 0.00 38.54 4.52
3 4 4.630069 ACGTTGGACATCTACTGTATTTGC 59.370 41.667 0.00 0.00 38.54 3.68
4 5 8.420374 AATACGTTGGACATCTACTGTATTTG 57.580 34.615 0.00 0.00 38.54 2.32
5 6 9.444600 AAAATACGTTGGACATCTACTGTATTT 57.555 29.630 0.00 0.00 39.28 1.40
6 7 8.879759 CAAAATACGTTGGACATCTACTGTATT 58.120 33.333 0.00 0.00 38.54 1.89
7 8 8.038944 ACAAAATACGTTGGACATCTACTGTAT 58.961 33.333 0.00 0.00 33.25 2.29
8 9 7.380536 ACAAAATACGTTGGACATCTACTGTA 58.619 34.615 0.00 0.00 33.25 2.74
9 10 6.228258 ACAAAATACGTTGGACATCTACTGT 58.772 36.000 0.00 0.00 34.73 3.55
10 11 6.590292 AGACAAAATACGTTGGACATCTACTG 59.410 38.462 0.00 0.00 32.50 2.74
11 12 6.698380 AGACAAAATACGTTGGACATCTACT 58.302 36.000 0.00 0.00 32.50 2.57
12 13 6.963049 AGACAAAATACGTTGGACATCTAC 57.037 37.500 0.00 0.00 32.50 2.59
13 14 9.309516 GAATAGACAAAATACGTTGGACATCTA 57.690 33.333 0.00 0.00 32.50 1.98
14 15 7.280205 GGAATAGACAAAATACGTTGGACATCT 59.720 37.037 0.00 0.00 32.50 2.90
15 16 7.280205 AGGAATAGACAAAATACGTTGGACATC 59.720 37.037 0.00 0.00 32.50 3.06
16 17 7.110155 AGGAATAGACAAAATACGTTGGACAT 58.890 34.615 0.00 0.00 32.50 3.06
17 18 6.469410 AGGAATAGACAAAATACGTTGGACA 58.531 36.000 0.00 0.00 32.50 4.02
18 19 6.980051 AGGAATAGACAAAATACGTTGGAC 57.020 37.500 0.00 0.00 32.50 4.02
19 20 7.574217 GCAAAGGAATAGACAAAATACGTTGGA 60.574 37.037 0.00 0.00 32.50 3.53
20 21 6.526674 GCAAAGGAATAGACAAAATACGTTGG 59.473 38.462 0.00 0.00 32.50 3.77
21 22 6.526674 GGCAAAGGAATAGACAAAATACGTTG 59.473 38.462 0.00 0.00 34.52 4.10
22 23 6.433093 AGGCAAAGGAATAGACAAAATACGTT 59.567 34.615 0.00 0.00 0.00 3.99
23 24 5.944007 AGGCAAAGGAATAGACAAAATACGT 59.056 36.000 0.00 0.00 0.00 3.57
24 25 6.258160 CAGGCAAAGGAATAGACAAAATACG 58.742 40.000 0.00 0.00 0.00 3.06
25 26 6.036470 GCAGGCAAAGGAATAGACAAAATAC 58.964 40.000 0.00 0.00 0.00 1.89
26 27 5.951747 AGCAGGCAAAGGAATAGACAAAATA 59.048 36.000 0.00 0.00 0.00 1.40
27 28 4.774200 AGCAGGCAAAGGAATAGACAAAAT 59.226 37.500 0.00 0.00 0.00 1.82
28 29 4.151883 AGCAGGCAAAGGAATAGACAAAA 58.848 39.130 0.00 0.00 0.00 2.44
29 30 3.758554 GAGCAGGCAAAGGAATAGACAAA 59.241 43.478 0.00 0.00 0.00 2.83
30 31 3.244875 TGAGCAGGCAAAGGAATAGACAA 60.245 43.478 0.00 0.00 0.00 3.18
31 32 2.305635 TGAGCAGGCAAAGGAATAGACA 59.694 45.455 0.00 0.00 0.00 3.41
32 33 2.991250 TGAGCAGGCAAAGGAATAGAC 58.009 47.619 0.00 0.00 0.00 2.59
33 34 3.200605 TCATGAGCAGGCAAAGGAATAGA 59.799 43.478 0.00 0.00 0.00 1.98
34 35 3.314635 GTCATGAGCAGGCAAAGGAATAG 59.685 47.826 0.00 0.00 0.00 1.73
35 36 3.282021 GTCATGAGCAGGCAAAGGAATA 58.718 45.455 0.00 0.00 0.00 1.75
36 37 2.097825 GTCATGAGCAGGCAAAGGAAT 58.902 47.619 0.00 0.00 0.00 3.01
37 38 1.202915 TGTCATGAGCAGGCAAAGGAA 60.203 47.619 0.00 0.00 0.00 3.36
38 39 0.401356 TGTCATGAGCAGGCAAAGGA 59.599 50.000 0.00 0.00 0.00 3.36
39 40 1.471119 ATGTCATGAGCAGGCAAAGG 58.529 50.000 0.00 0.00 0.00 3.11
40 41 2.416836 CCAATGTCATGAGCAGGCAAAG 60.417 50.000 0.00 0.00 0.00 2.77
41 42 1.546923 CCAATGTCATGAGCAGGCAAA 59.453 47.619 0.00 0.00 0.00 3.68
42 43 1.179152 CCAATGTCATGAGCAGGCAA 58.821 50.000 0.00 0.00 0.00 4.52
43 44 0.328926 TCCAATGTCATGAGCAGGCA 59.671 50.000 0.00 0.00 0.00 4.75
44 45 0.737219 GTCCAATGTCATGAGCAGGC 59.263 55.000 0.00 0.00 0.00 4.85
45 46 1.012086 CGTCCAATGTCATGAGCAGG 58.988 55.000 0.00 0.00 0.00 4.85
46 47 2.014335 TCGTCCAATGTCATGAGCAG 57.986 50.000 0.00 0.00 0.00 4.24
47 48 2.696989 ATCGTCCAATGTCATGAGCA 57.303 45.000 0.00 0.00 0.00 4.26
48 49 4.100529 CAAAATCGTCCAATGTCATGAGC 58.899 43.478 0.00 0.00 0.00 4.26
49 50 5.090757 CACAAAATCGTCCAATGTCATGAG 58.909 41.667 0.00 0.00 0.00 2.90
50 51 4.082841 CCACAAAATCGTCCAATGTCATGA 60.083 41.667 0.00 0.00 0.00 3.07
51 52 4.168014 CCACAAAATCGTCCAATGTCATG 58.832 43.478 0.00 0.00 0.00 3.07
52 53 3.367292 GCCACAAAATCGTCCAATGTCAT 60.367 43.478 0.00 0.00 0.00 3.06
53 54 2.030363 GCCACAAAATCGTCCAATGTCA 60.030 45.455 0.00 0.00 0.00 3.58
54 55 2.030363 TGCCACAAAATCGTCCAATGTC 60.030 45.455 0.00 0.00 0.00 3.06
55 56 1.959985 TGCCACAAAATCGTCCAATGT 59.040 42.857 0.00 0.00 0.00 2.71
56 57 2.721274 TGCCACAAAATCGTCCAATG 57.279 45.000 0.00 0.00 0.00 2.82
57 58 2.094078 CCATGCCACAAAATCGTCCAAT 60.094 45.455 0.00 0.00 0.00 3.16
58 59 1.271934 CCATGCCACAAAATCGTCCAA 59.728 47.619 0.00 0.00 0.00 3.53
59 60 0.887247 CCATGCCACAAAATCGTCCA 59.113 50.000 0.00 0.00 0.00 4.02
60 61 1.133025 CTCCATGCCACAAAATCGTCC 59.867 52.381 0.00 0.00 0.00 4.79
61 62 1.812571 ACTCCATGCCACAAAATCGTC 59.187 47.619 0.00 0.00 0.00 4.20
62 63 1.909700 ACTCCATGCCACAAAATCGT 58.090 45.000 0.00 0.00 0.00 3.73
63 64 3.302365 AAACTCCATGCCACAAAATCG 57.698 42.857 0.00 0.00 0.00 3.34
64 65 5.988561 TGTTAAAACTCCATGCCACAAAATC 59.011 36.000 0.00 0.00 0.00 2.17
65 66 5.923204 TGTTAAAACTCCATGCCACAAAAT 58.077 33.333 0.00 0.00 0.00 1.82
66 67 5.344743 TGTTAAAACTCCATGCCACAAAA 57.655 34.783 0.00 0.00 0.00 2.44
67 68 5.344743 TTGTTAAAACTCCATGCCACAAA 57.655 34.783 0.00 0.00 0.00 2.83
68 69 5.344743 TTTGTTAAAACTCCATGCCACAA 57.655 34.783 0.00 0.00 0.00 3.33
69 70 5.127845 TCTTTTGTTAAAACTCCATGCCACA 59.872 36.000 0.00 0.00 0.00 4.17
70 71 5.596845 TCTTTTGTTAAAACTCCATGCCAC 58.403 37.500 0.00 0.00 0.00 5.01
71 72 5.860941 TCTTTTGTTAAAACTCCATGCCA 57.139 34.783 0.00 0.00 0.00 4.92
72 73 7.546778 TTTTCTTTTGTTAAAACTCCATGCC 57.453 32.000 0.00 0.00 0.00 4.40
73 74 8.069574 CCATTTTCTTTTGTTAAAACTCCATGC 58.930 33.333 0.00 0.00 0.00 4.06
74 75 9.323985 TCCATTTTCTTTTGTTAAAACTCCATG 57.676 29.630 0.00 0.00 0.00 3.66
76 77 9.898152 AATCCATTTTCTTTTGTTAAAACTCCA 57.102 25.926 0.00 0.00 0.00 3.86
78 79 9.650371 GCAATCCATTTTCTTTTGTTAAAACTC 57.350 29.630 0.00 0.00 0.00 3.01
79 80 9.394767 AGCAATCCATTTTCTTTTGTTAAAACT 57.605 25.926 0.00 0.00 0.00 2.66
80 81 9.650371 GAGCAATCCATTTTCTTTTGTTAAAAC 57.350 29.630 0.00 0.00 0.00 2.43
81 82 9.388506 TGAGCAATCCATTTTCTTTTGTTAAAA 57.611 25.926 0.00 0.00 0.00 1.52
82 83 8.825745 GTGAGCAATCCATTTTCTTTTGTTAAA 58.174 29.630 0.00 0.00 0.00 1.52
83 84 7.984050 TGTGAGCAATCCATTTTCTTTTGTTAA 59.016 29.630 0.00 0.00 0.00 2.01
84 85 7.495901 TGTGAGCAATCCATTTTCTTTTGTTA 58.504 30.769 0.00 0.00 0.00 2.41
85 86 6.347696 TGTGAGCAATCCATTTTCTTTTGTT 58.652 32.000 0.00 0.00 0.00 2.83
86 87 5.916318 TGTGAGCAATCCATTTTCTTTTGT 58.084 33.333 0.00 0.00 0.00 2.83
87 88 6.647481 TGATGTGAGCAATCCATTTTCTTTTG 59.353 34.615 0.00 0.00 0.00 2.44
88 89 6.761312 TGATGTGAGCAATCCATTTTCTTTT 58.239 32.000 0.00 0.00 0.00 2.27
89 90 6.349243 TGATGTGAGCAATCCATTTTCTTT 57.651 33.333 0.00 0.00 0.00 2.52
90 91 5.988310 TGATGTGAGCAATCCATTTTCTT 57.012 34.783 0.00 0.00 0.00 2.52
91 92 5.421056 ACATGATGTGAGCAATCCATTTTCT 59.579 36.000 0.00 0.00 0.00 2.52
92 93 5.657474 ACATGATGTGAGCAATCCATTTTC 58.343 37.500 0.00 0.00 0.00 2.29
93 94 5.670792 ACATGATGTGAGCAATCCATTTT 57.329 34.783 0.00 0.00 0.00 1.82
107 108 1.704628 TGGTTCCACTCCACATGATGT 59.295 47.619 0.00 0.00 0.00 3.06
108 109 2.495155 TGGTTCCACTCCACATGATG 57.505 50.000 0.00 0.00 0.00 3.07
115 116 1.125093 ATGTCGGTGGTTCCACTCCA 61.125 55.000 19.42 13.93 37.16 3.86
116 117 0.673644 CATGTCGGTGGTTCCACTCC 60.674 60.000 19.42 5.35 37.16 3.85
117 118 0.673644 CCATGTCGGTGGTTCCACTC 60.674 60.000 19.42 10.17 37.16 3.51
118 119 1.374947 CCATGTCGGTGGTTCCACT 59.625 57.895 19.42 0.00 37.16 4.00
119 120 2.332654 GCCATGTCGGTGGTTCCAC 61.333 63.158 12.99 12.99 41.47 4.02
120 121 2.033448 GCCATGTCGGTGGTTCCA 59.967 61.111 0.00 0.00 41.47 3.53
121 122 1.586154 CTTGCCATGTCGGTGGTTCC 61.586 60.000 0.00 0.00 41.47 3.62
122 123 0.605319 TCTTGCCATGTCGGTGGTTC 60.605 55.000 0.00 0.00 41.47 3.62
123 124 0.179004 TTCTTGCCATGTCGGTGGTT 60.179 50.000 0.00 0.00 41.47 3.67
124 125 0.179004 TTTCTTGCCATGTCGGTGGT 60.179 50.000 0.00 0.00 41.47 4.16
125 126 0.240945 GTTTCTTGCCATGTCGGTGG 59.759 55.000 0.00 0.00 42.35 4.61
126 127 1.069022 CAGTTTCTTGCCATGTCGGTG 60.069 52.381 0.00 0.00 36.97 4.94
127 128 1.238439 CAGTTTCTTGCCATGTCGGT 58.762 50.000 0.00 0.00 36.97 4.69
128 129 0.523072 CCAGTTTCTTGCCATGTCGG 59.477 55.000 0.00 0.00 38.11 4.79
129 130 0.523072 CCCAGTTTCTTGCCATGTCG 59.477 55.000 0.00 0.00 0.00 4.35
130 131 0.890683 CCCCAGTTTCTTGCCATGTC 59.109 55.000 0.00 0.00 0.00 3.06
131 132 1.187567 GCCCCAGTTTCTTGCCATGT 61.188 55.000 0.00 0.00 0.00 3.21
132 133 1.593265 GCCCCAGTTTCTTGCCATG 59.407 57.895 0.00 0.00 0.00 3.66
133 134 1.978617 CGCCCCAGTTTCTTGCCAT 60.979 57.895 0.00 0.00 0.00 4.40
134 135 2.058125 TACGCCCCAGTTTCTTGCCA 62.058 55.000 0.00 0.00 0.00 4.92
135 136 1.302993 TACGCCCCAGTTTCTTGCC 60.303 57.895 0.00 0.00 0.00 4.52
136 137 0.887387 TGTACGCCCCAGTTTCTTGC 60.887 55.000 0.00 0.00 0.00 4.01
137 138 1.600023 TTGTACGCCCCAGTTTCTTG 58.400 50.000 0.00 0.00 0.00 3.02
138 139 2.351706 TTTGTACGCCCCAGTTTCTT 57.648 45.000 0.00 0.00 0.00 2.52
139 140 2.159382 CATTTGTACGCCCCAGTTTCT 58.841 47.619 0.00 0.00 0.00 2.52
140 141 1.201414 CCATTTGTACGCCCCAGTTTC 59.799 52.381 0.00 0.00 0.00 2.78
141 142 1.202952 TCCATTTGTACGCCCCAGTTT 60.203 47.619 0.00 0.00 0.00 2.66
142 143 0.402504 TCCATTTGTACGCCCCAGTT 59.597 50.000 0.00 0.00 0.00 3.16
143 144 0.402504 TTCCATTTGTACGCCCCAGT 59.597 50.000 0.00 0.00 0.00 4.00
144 145 1.762708 ATTCCATTTGTACGCCCCAG 58.237 50.000 0.00 0.00 0.00 4.45
145 146 1.821753 CAATTCCATTTGTACGCCCCA 59.178 47.619 0.00 0.00 0.00 4.96
146 147 2.096248 TCAATTCCATTTGTACGCCCC 58.904 47.619 0.00 0.00 0.00 5.80
147 148 2.752903 ACTCAATTCCATTTGTACGCCC 59.247 45.455 0.00 0.00 0.00 6.13
148 149 3.181500 GGACTCAATTCCATTTGTACGCC 60.181 47.826 0.00 0.00 35.49 5.68
149 150 3.438781 TGGACTCAATTCCATTTGTACGC 59.561 43.478 0.00 0.00 41.00 4.42
158 159 8.668394 TCCATTCACACATGGACTCAATTCCA 62.668 42.308 0.00 0.00 46.67 3.53
159 160 4.142315 CCATTCACACATGGACTCAATTCC 60.142 45.833 0.00 0.00 46.18 3.01
160 161 4.701651 TCCATTCACACATGGACTCAATTC 59.298 41.667 0.00 0.00 46.67 2.17
161 162 4.665451 TCCATTCACACATGGACTCAATT 58.335 39.130 0.00 0.00 46.67 2.32
162 163 4.305539 TCCATTCACACATGGACTCAAT 57.694 40.909 0.00 0.00 46.67 2.57
163 164 3.786368 TCCATTCACACATGGACTCAA 57.214 42.857 0.00 0.00 46.67 3.02
169 170 5.395682 ACTCAAATTCCATTCACACATGG 57.604 39.130 0.00 0.00 44.80 3.66
170 171 5.047872 TGGACTCAAATTCCATTCACACATG 60.048 40.000 0.00 0.00 38.28 3.21
171 172 5.078949 TGGACTCAAATTCCATTCACACAT 58.921 37.500 0.00 0.00 38.28 3.21
172 173 4.468713 TGGACTCAAATTCCATTCACACA 58.531 39.130 0.00 0.00 38.28 3.72
180 181 7.969773 CCATTCACACATGGACTCAAATTCCA 61.970 42.308 0.00 0.00 46.18 3.53
181 182 5.404946 CATTCACACATGGACTCAAATTCC 58.595 41.667 0.00 0.00 0.00 3.01
182 183 5.183713 TCCATTCACACATGGACTCAAATTC 59.816 40.000 0.00 0.00 46.67 2.17
183 184 5.078949 TCCATTCACACATGGACTCAAATT 58.921 37.500 0.00 0.00 46.67 1.82
184 185 4.665451 TCCATTCACACATGGACTCAAAT 58.335 39.130 0.00 0.00 46.67 2.32
185 186 4.097551 TCCATTCACACATGGACTCAAA 57.902 40.909 0.00 0.00 46.67 2.69
186 187 3.786368 TCCATTCACACATGGACTCAA 57.214 42.857 0.00 0.00 46.67 3.02
192 193 5.047872 TGTCTCAAATTCCATTCACACATGG 60.048 40.000 0.00 0.00 44.80 3.66
193 194 6.016213 TGTCTCAAATTCCATTCACACATG 57.984 37.500 0.00 0.00 0.00 3.21
194 195 6.005823 TCTGTCTCAAATTCCATTCACACAT 58.994 36.000 0.00 0.00 0.00 3.21
195 196 5.375773 TCTGTCTCAAATTCCATTCACACA 58.624 37.500 0.00 0.00 0.00 3.72
196 197 5.947228 TCTGTCTCAAATTCCATTCACAC 57.053 39.130 0.00 0.00 0.00 3.82
197 198 5.352293 CGATCTGTCTCAAATTCCATTCACA 59.648 40.000 0.00 0.00 0.00 3.58
198 199 5.582269 TCGATCTGTCTCAAATTCCATTCAC 59.418 40.000 0.00 0.00 0.00 3.18
199 200 5.733676 TCGATCTGTCTCAAATTCCATTCA 58.266 37.500 0.00 0.00 0.00 2.57
200 201 6.045318 TCTCGATCTGTCTCAAATTCCATTC 58.955 40.000 0.00 0.00 0.00 2.67
201 202 5.982356 TCTCGATCTGTCTCAAATTCCATT 58.018 37.500 0.00 0.00 0.00 3.16
202 203 5.453057 CCTCTCGATCTGTCTCAAATTCCAT 60.453 44.000 0.00 0.00 0.00 3.41
203 204 4.142071 CCTCTCGATCTGTCTCAAATTCCA 60.142 45.833 0.00 0.00 0.00 3.53
204 205 4.367450 CCTCTCGATCTGTCTCAAATTCC 58.633 47.826 0.00 0.00 0.00 3.01
205 206 3.801594 GCCTCTCGATCTGTCTCAAATTC 59.198 47.826 0.00 0.00 0.00 2.17
206 207 3.431486 GGCCTCTCGATCTGTCTCAAATT 60.431 47.826 0.00 0.00 0.00 1.82
207 208 2.102252 GGCCTCTCGATCTGTCTCAAAT 59.898 50.000 0.00 0.00 0.00 2.32
208 209 1.478510 GGCCTCTCGATCTGTCTCAAA 59.521 52.381 0.00 0.00 0.00 2.69
209 210 1.107114 GGCCTCTCGATCTGTCTCAA 58.893 55.000 0.00 0.00 0.00 3.02
210 211 0.034089 TGGCCTCTCGATCTGTCTCA 60.034 55.000 3.32 0.00 0.00 3.27
211 212 1.327303 ATGGCCTCTCGATCTGTCTC 58.673 55.000 3.32 0.00 0.00 3.36
212 213 1.686052 GAATGGCCTCTCGATCTGTCT 59.314 52.381 3.32 0.00 0.00 3.41
213 214 1.270041 GGAATGGCCTCTCGATCTGTC 60.270 57.143 3.32 0.00 0.00 3.51
214 215 0.755686 GGAATGGCCTCTCGATCTGT 59.244 55.000 3.32 0.00 0.00 3.41
215 216 0.034616 GGGAATGGCCTCTCGATCTG 59.965 60.000 3.32 0.00 36.66 2.90
216 217 0.399091 TGGGAATGGCCTCTCGATCT 60.399 55.000 3.32 0.00 36.66 2.75
217 218 0.689623 ATGGGAATGGCCTCTCGATC 59.310 55.000 3.32 0.00 36.66 3.69
218 219 0.689623 GATGGGAATGGCCTCTCGAT 59.310 55.000 3.32 0.00 36.66 3.59
219 220 0.399091 AGATGGGAATGGCCTCTCGA 60.399 55.000 3.32 0.00 36.66 4.04
222 223 2.049627 GCGAGATGGGAATGGCCTCT 62.050 60.000 3.32 0.00 36.66 3.69
289 292 2.673092 TAGGGTTTTGGGGGTGGGGA 62.673 60.000 0.00 0.00 0.00 4.81
397 421 3.532155 GAGAGGAGGTGCCGCGAT 61.532 66.667 8.23 0.00 41.97 4.58
833 857 3.063180 CAGATCACACGAAAATCAGAGGC 59.937 47.826 0.00 0.00 0.00 4.70
834 858 4.328440 GTCAGATCACACGAAAATCAGAGG 59.672 45.833 0.00 0.00 0.00 3.69
903 1184 3.462678 GCCTCCACCGTCTCCCTC 61.463 72.222 0.00 0.00 0.00 4.30
931 1212 3.311110 TGCCTCGTCGCCTCCTTT 61.311 61.111 0.00 0.00 0.00 3.11
1083 1369 4.393680 GTGTGCGTTAGGATGGATTTTGTA 59.606 41.667 0.00 0.00 0.00 2.41
1221 1513 4.899352 AGATACTTGAAAGTGCTCACCT 57.101 40.909 5.95 0.00 40.07 4.00
1609 1937 3.938334 GTCAACAAGTTGGTGCCAAAAAT 59.062 39.130 16.40 0.00 40.78 1.82
1625 1957 0.396435 ATCGTTGGAGCAGGTCAACA 59.604 50.000 1.20 0.00 42.22 3.33
1646 1978 4.101741 ACTGTAGGTCCCTAGATTTGCATC 59.898 45.833 0.00 0.00 0.00 3.91
1752 2087 6.603940 AAATCTTTGCAAGCCTTGGTATTA 57.396 33.333 6.57 0.00 0.00 0.98
1763 2106 7.920682 ACCAGTAACTGTTTAAATCTTTGCAAG 59.079 33.333 0.00 0.00 0.00 4.01
1911 2256 6.215121 TCACATAAGTGGACAAGCAATTTTG 58.785 36.000 0.00 0.00 45.91 2.44
2012 2357 2.047655 CCGCAGCAAGTTACCGGA 60.048 61.111 9.46 0.00 41.34 5.14
2027 2372 1.670811 GCAATATGAAGTGGTGTCCCG 59.329 52.381 0.00 0.00 0.00 5.14
2068 2413 5.714333 TGGCCAAGTAAAATCTTCATAGCAA 59.286 36.000 0.61 0.00 0.00 3.91
2117 2462 5.885230 TGAATGTTCAGGCAGAATTAGTG 57.115 39.130 0.00 0.00 38.76 2.74
2161 2506 2.097110 ACTACACCTCAGACCAACCA 57.903 50.000 0.00 0.00 0.00 3.67
2486 3141 8.200364 AGCAATATTAACATGGCAAATTTCAC 57.800 30.769 0.00 0.00 0.00 3.18
2517 3172 8.657074 TTAAACTACGGATAGAATGGTGAATG 57.343 34.615 0.00 0.00 32.23 2.67
2599 3254 5.551233 TCATTTTGTTGTACTGGAGAGAGG 58.449 41.667 0.00 0.00 0.00 3.69
2721 3376 4.489737 TCCAATATACGATTCCAGGGACT 58.510 43.478 0.00 0.00 43.88 3.85
2769 3424 6.055588 AGCTAAAGTTCACTAAGCTGAAACA 58.944 36.000 13.38 0.00 41.23 2.83
2833 3488 0.250467 ATACAGGACGGCATGCCATC 60.250 55.000 34.93 29.96 35.37 3.51
2949 3633 3.181486 GCAAGGCCAAGGCTACTTTATTC 60.181 47.826 5.01 0.00 37.50 1.75
3017 3703 5.012458 TCAGTCATTCAGTCCTCAAGATGTT 59.988 40.000 0.00 0.00 0.00 2.71
3039 3725 9.793259 CCAGCCTATATAGGAAAAAGTTAATCA 57.207 33.333 29.64 0.00 46.63 2.57
3040 3726 9.794719 ACCAGCCTATATAGGAAAAAGTTAATC 57.205 33.333 29.64 9.28 46.63 1.75
3054 3740 2.105821 GGCAACACCACCAGCCTATATA 59.894 50.000 0.00 0.00 43.70 0.86
3192 3878 7.702772 CACGAGTACAGTAGCAAAGAGATAATT 59.297 37.037 0.00 0.00 0.00 1.40
3284 3970 5.819901 GTGGAAAGAGATATGGAGGAAACAG 59.180 44.000 0.00 0.00 0.00 3.16
3310 3996 9.353999 GTCATTATAAACTCATTCCAAAACACC 57.646 33.333 0.00 0.00 0.00 4.16
3472 4159 3.202829 AGAGACTAGGACTCGGCTAAG 57.797 52.381 11.60 0.00 39.12 2.18
3538 4225 5.403766 CCTAATGATCAGACGCATGACTAAC 59.596 44.000 0.09 0.00 30.46 2.34
3550 4237 2.366590 AGCGCATGTCCTAATGATCAGA 59.633 45.455 11.47 0.00 0.00 3.27
3554 4241 1.141657 ACCAGCGCATGTCCTAATGAT 59.858 47.619 11.47 0.00 0.00 2.45
3565 4252 1.674057 GCCCTATAGACCAGCGCAT 59.326 57.895 11.47 0.00 0.00 4.73
3572 4259 1.254954 CCGTAGTGGCCCTATAGACC 58.745 60.000 0.00 3.04 0.00 3.85
3740 4427 7.851822 ATTTTGCAACAAAGTAGTAACATCG 57.148 32.000 0.00 0.00 0.00 3.84
3851 4538 3.608316 AGCAAGCACCAACTTTTTGAA 57.392 38.095 0.00 0.00 34.24 2.69
3920 4607 8.601476 GTCAGTTACAGGAAATAATTTCTACCG 58.399 37.037 0.00 0.00 39.59 4.02
4045 4733 7.938140 ATTAGTTTGAGCCAAGTTATTAGCA 57.062 32.000 0.00 0.00 0.00 3.49
4052 4740 8.422577 AATAGGAAATTAGTTTGAGCCAAGTT 57.577 30.769 0.00 0.00 0.00 2.66
4238 4931 8.312564 AGAACTGAACCTACCTTTACTACATTC 58.687 37.037 0.00 0.00 0.00 2.67
4368 5061 1.353076 GGTACTACCACGCCTTTTCG 58.647 55.000 0.00 0.00 38.42 3.46
4369 5062 1.730501 GGGTACTACCACGCCTTTTC 58.269 55.000 7.57 0.00 41.02 2.29
4371 5064 1.593265 CGGGTACTACCACGCCTTT 59.407 57.895 7.57 0.00 41.02 3.11
4372 5065 2.353610 CCGGGTACTACCACGCCTT 61.354 63.158 7.57 0.00 41.02 4.35
4373 5066 2.757099 CCGGGTACTACCACGCCT 60.757 66.667 7.57 0.00 41.02 5.52
4374 5067 3.841758 CCCGGGTACTACCACGCC 61.842 72.222 14.18 0.00 41.02 5.68
4375 5068 3.841758 CCCCGGGTACTACCACGC 61.842 72.222 21.85 0.00 41.02 5.34
4376 5069 3.149648 CCCCCGGGTACTACCACG 61.150 72.222 21.85 8.06 41.02 4.94
4392 5085 0.177373 GATAAGTGGGTGTCGGGACC 59.823 60.000 0.00 0.00 34.96 4.46
4393 5086 0.177373 GGATAAGTGGGTGTCGGGAC 59.823 60.000 0.00 0.00 0.00 4.46
4394 5087 0.042131 AGGATAAGTGGGTGTCGGGA 59.958 55.000 0.00 0.00 0.00 5.14
4395 5088 1.784358 TAGGATAAGTGGGTGTCGGG 58.216 55.000 0.00 0.00 0.00 5.14
4396 5089 3.005897 CAGATAGGATAAGTGGGTGTCGG 59.994 52.174 0.00 0.00 0.00 4.79
4397 5090 3.637229 ACAGATAGGATAAGTGGGTGTCG 59.363 47.826 0.00 0.00 0.00 4.35
4398 5091 4.896482 AGACAGATAGGATAAGTGGGTGTC 59.104 45.833 0.00 0.00 33.51 3.67
4399 5092 4.651503 CAGACAGATAGGATAAGTGGGTGT 59.348 45.833 0.00 0.00 0.00 4.16
4400 5093 4.502259 GCAGACAGATAGGATAAGTGGGTG 60.502 50.000 0.00 0.00 0.00 4.61
4401 5094 3.643792 GCAGACAGATAGGATAAGTGGGT 59.356 47.826 0.00 0.00 0.00 4.51
4402 5095 3.643320 TGCAGACAGATAGGATAAGTGGG 59.357 47.826 0.00 0.00 0.00 4.61
4403 5096 4.502259 GGTGCAGACAGATAGGATAAGTGG 60.502 50.000 0.00 0.00 0.00 4.00
4404 5097 4.343526 AGGTGCAGACAGATAGGATAAGTG 59.656 45.833 0.00 0.00 0.00 3.16
4405 5098 4.551671 AGGTGCAGACAGATAGGATAAGT 58.448 43.478 0.00 0.00 0.00 2.24
4406 5099 5.536538 TGTAGGTGCAGACAGATAGGATAAG 59.463 44.000 0.00 0.00 0.00 1.73
4407 5100 5.454966 TGTAGGTGCAGACAGATAGGATAA 58.545 41.667 0.00 0.00 0.00 1.75
4408 5101 5.061721 TGTAGGTGCAGACAGATAGGATA 57.938 43.478 0.00 0.00 0.00 2.59
4409 5102 3.916035 TGTAGGTGCAGACAGATAGGAT 58.084 45.455 0.00 0.00 0.00 3.24
4410 5103 3.382083 TGTAGGTGCAGACAGATAGGA 57.618 47.619 0.00 0.00 0.00 2.94
4411 5104 4.471904 TTTGTAGGTGCAGACAGATAGG 57.528 45.455 0.00 0.00 0.00 2.57
4412 5105 6.820656 AGAAATTTGTAGGTGCAGACAGATAG 59.179 38.462 0.00 0.00 0.00 2.08
4413 5106 6.711277 AGAAATTTGTAGGTGCAGACAGATA 58.289 36.000 0.00 0.00 0.00 1.98
4414 5107 5.564550 AGAAATTTGTAGGTGCAGACAGAT 58.435 37.500 0.00 0.00 0.00 2.90
4415 5108 4.973168 AGAAATTTGTAGGTGCAGACAGA 58.027 39.130 0.00 0.00 0.00 3.41
4416 5109 4.143030 CGAGAAATTTGTAGGTGCAGACAG 60.143 45.833 0.00 0.00 0.00 3.51
4417 5110 3.745975 CGAGAAATTTGTAGGTGCAGACA 59.254 43.478 0.00 0.00 0.00 3.41
4418 5111 3.125316 CCGAGAAATTTGTAGGTGCAGAC 59.875 47.826 6.35 0.00 0.00 3.51
4419 5112 3.334691 CCGAGAAATTTGTAGGTGCAGA 58.665 45.455 6.35 0.00 0.00 4.26
4420 5113 2.159517 GCCGAGAAATTTGTAGGTGCAG 60.160 50.000 14.56 0.00 0.00 4.41
4421 5114 1.810151 GCCGAGAAATTTGTAGGTGCA 59.190 47.619 14.56 0.00 0.00 4.57
4422 5115 1.810151 TGCCGAGAAATTTGTAGGTGC 59.190 47.619 14.56 3.71 0.00 5.01
4423 5116 4.497473 TTTGCCGAGAAATTTGTAGGTG 57.503 40.909 14.56 0.00 0.00 4.00
4424 5117 4.157840 GGATTTGCCGAGAAATTTGTAGGT 59.842 41.667 14.56 0.00 0.00 3.08
4425 5118 4.399303 AGGATTTGCCGAGAAATTTGTAGG 59.601 41.667 9.76 9.76 43.43 3.18
4426 5119 5.567138 AGGATTTGCCGAGAAATTTGTAG 57.433 39.130 0.00 0.00 43.43 2.74
4491 5184 9.528489 TTGTAAATACTCTTTAGGCAATTTCCT 57.472 29.630 1.25 1.25 40.21 3.36
4531 5224 1.642037 CGCTTGCCATGTCAGTCCAG 61.642 60.000 0.00 0.00 0.00 3.86
4663 5356 4.081972 ACTCATGACAATCGACTAGCAACT 60.082 41.667 0.00 0.00 0.00 3.16
4777 5471 9.654663 AAGGAACTATCTAAAACTGTGATGTAC 57.345 33.333 0.00 0.00 38.49 2.90
4800 5494 7.069569 CGTTGGAACGCATAATAATTCTAAGG 58.930 38.462 0.00 0.00 46.06 2.69
4824 5519 7.491254 TTTAATCGAAAGTTGATTTGATGCG 57.509 32.000 0.00 0.00 37.28 4.73
4995 5701 2.220653 TTGGAGGCTGGAAAAGGATG 57.779 50.000 0.00 0.00 0.00 3.51
5151 5974 4.559153 TGCTTTGCAAGGAAATTTCTAGC 58.441 39.130 17.42 17.32 34.76 3.42
5408 6232 9.426837 ACAACAGTTAATAGCAGATTACGTTTA 57.573 29.630 0.00 0.00 0.00 2.01
5443 6267 1.405526 GCTCCAGTGCCTACATCGAAA 60.406 52.381 0.00 0.00 0.00 3.46
5777 6601 1.267532 CGCAATCCGTCCTCAATTTCG 60.268 52.381 0.00 0.00 0.00 3.46
5783 6607 0.828022 AATACCGCAATCCGTCCTCA 59.172 50.000 0.00 0.00 34.38 3.86
5819 6643 9.088987 TCACCATAAGATAGATATGCTGTAACA 57.911 33.333 0.00 0.00 30.91 2.41
5849 6678 3.084039 CAATTAGCCTCCAGTGCAAGAA 58.916 45.455 0.00 0.00 0.00 2.52
5927 6756 6.662663 GGGATACAGGTCTAATCCTACGTTAT 59.337 42.308 0.00 0.00 39.36 1.89
5944 6773 3.408634 ACCAACTTGAAACGGGATACAG 58.591 45.455 0.00 0.00 39.74 2.74
5957 6788 3.192633 CCTAAAATCCCCGAACCAACTTG 59.807 47.826 0.00 0.00 0.00 3.16
5963 6794 2.022195 GCTTCCTAAAATCCCCGAACC 58.978 52.381 0.00 0.00 0.00 3.62
5999 7828 2.951726 GCAGAGGCATTGAAGGTTTTC 58.048 47.619 0.00 0.00 40.72 2.29
6179 8010 4.502105 TTCCATAGCTTTCCTGCACATA 57.498 40.909 0.00 0.00 34.99 2.29
6231 8062 0.460284 GCTGGGTGTATCGGTCACTG 60.460 60.000 0.00 0.00 36.25 3.66
6266 8097 3.452755 TCATGAACAGCCGTGTATAGG 57.547 47.619 0.00 0.00 35.08 2.57
6361 8192 9.436957 ACTCATCACTTAACTTACACAATAAGG 57.563 33.333 0.00 0.00 31.25 2.69
6363 8194 8.717821 GCACTCATCACTTAACTTACACAATAA 58.282 33.333 0.00 0.00 0.00 1.40
6364 8195 8.094548 AGCACTCATCACTTAACTTACACAATA 58.905 33.333 0.00 0.00 0.00 1.90
6365 8196 6.936900 AGCACTCATCACTTAACTTACACAAT 59.063 34.615 0.00 0.00 0.00 2.71
6489 8326 1.822990 CGGAGCTACCACACCTTTCTA 59.177 52.381 0.00 0.00 38.90 2.10
6603 8466 2.016318 CTTTGCTGAGTGTGTGAACCA 58.984 47.619 0.00 0.00 0.00 3.67
6604 8467 1.334869 CCTTTGCTGAGTGTGTGAACC 59.665 52.381 0.00 0.00 0.00 3.62
6607 8470 0.107263 TGCCTTTGCTGAGTGTGTGA 60.107 50.000 0.00 0.00 38.71 3.58
6681 8544 2.093500 TGGCATCGAAGCTGTTATCACT 60.093 45.455 12.92 0.00 34.17 3.41
6684 8547 2.481952 GGATGGCATCGAAGCTGTTATC 59.518 50.000 20.50 10.78 34.17 1.75
6695 8558 2.487934 CCAAACTCTAGGATGGCATCG 58.512 52.381 20.50 9.33 0.00 3.84
6701 8564 5.760253 ACAATAATCGCCAAACTCTAGGATG 59.240 40.000 0.00 0.00 0.00 3.51
6748 8611 3.632145 CCACCATACCCTAGCAATCAAAC 59.368 47.826 0.00 0.00 0.00 2.93
6762 8625 5.445964 ACCAATCATCTAAACCCACCATAC 58.554 41.667 0.00 0.00 0.00 2.39
6783 8646 7.233757 ACTGGATGTAGGAATCAGAACTATACC 59.766 40.741 0.00 0.00 0.00 2.73
6792 8655 9.877178 GGTTATAATACTGGATGTAGGAATCAG 57.123 37.037 0.00 0.00 34.24 2.90
6799 8662 8.846943 TGCAATGGTTATAATACTGGATGTAG 57.153 34.615 0.00 0.00 34.24 2.74
6960 8839 6.275494 TGTCGAGTGATTAGGTGATTAACA 57.725 37.500 0.00 0.00 0.00 2.41
6970 8849 2.892374 TGTGGCATGTCGAGTGATTAG 58.108 47.619 0.00 0.00 0.00 1.73
6980 8859 4.697352 AGAAACTTGTAGATGTGGCATGTC 59.303 41.667 0.00 0.00 0.00 3.06
6995 8874 4.672413 GTCACGCTGATTCAAAGAAACTTG 59.328 41.667 0.00 0.00 0.00 3.16
7019 8898 2.355108 GCTTGATACACTTCAGGAGCCA 60.355 50.000 0.00 0.00 0.00 4.75
7025 8904 5.860182 CCAAAACATGCTTGATACACTTCAG 59.140 40.000 6.60 0.00 0.00 3.02
7026 8905 5.278907 CCCAAAACATGCTTGATACACTTCA 60.279 40.000 6.60 0.00 0.00 3.02
7027 8906 5.048083 TCCCAAAACATGCTTGATACACTTC 60.048 40.000 6.60 0.00 0.00 3.01
7028 8907 4.832266 TCCCAAAACATGCTTGATACACTT 59.168 37.500 6.60 0.00 0.00 3.16
7030 8909 4.782019 TCCCAAAACATGCTTGATACAC 57.218 40.909 6.60 0.00 0.00 2.90
7031 8910 7.363705 CCTTTATCCCAAAACATGCTTGATACA 60.364 37.037 6.60 0.00 0.00 2.29
7076 8974 6.324512 TGGAAGAATGATTAATTCCCCATGTG 59.675 38.462 15.25 0.00 45.10 3.21
7112 9010 8.822805 TCTCCAACTGTACTGTTTTATTATCCT 58.177 33.333 14.75 0.00 0.00 3.24
7121 9019 5.304686 TCCAATCTCCAACTGTACTGTTT 57.695 39.130 14.75 0.00 0.00 2.83
7123 9021 3.307059 GCTCCAATCTCCAACTGTACTGT 60.307 47.826 0.00 0.00 0.00 3.55
7124 9022 3.265791 GCTCCAATCTCCAACTGTACTG 58.734 50.000 0.00 0.00 0.00 2.74
7129 9027 2.089980 CAAGGCTCCAATCTCCAACTG 58.910 52.381 0.00 0.00 0.00 3.16
7138 9036 0.911769 TCATCGTCCAAGGCTCCAAT 59.088 50.000 0.00 0.00 0.00 3.16
7191 9089 9.899661 ATAGAGTAATCTGGTGAGCTACTATAG 57.100 37.037 2.23 0.00 29.64 1.31
7192 9090 9.893634 GATAGAGTAATCTGGTGAGCTACTATA 57.106 37.037 2.23 0.00 30.17 1.31
7193 9091 8.387039 TGATAGAGTAATCTGGTGAGCTACTAT 58.613 37.037 2.23 0.00 29.94 2.12
7194 9092 7.746703 TGATAGAGTAATCTGGTGAGCTACTA 58.253 38.462 2.23 0.00 29.94 1.82
7195 9093 6.606069 TGATAGAGTAATCTGGTGAGCTACT 58.394 40.000 2.23 0.00 31.45 2.57
7196 9094 6.885952 TGATAGAGTAATCTGGTGAGCTAC 57.114 41.667 2.23 0.00 0.00 3.58
7197 9095 7.234355 TCATGATAGAGTAATCTGGTGAGCTA 58.766 38.462 2.23 0.00 0.00 3.32
7198 9096 6.073981 TCATGATAGAGTAATCTGGTGAGCT 58.926 40.000 2.23 0.00 0.00 4.09
7199 9097 6.338214 TCATGATAGAGTAATCTGGTGAGC 57.662 41.667 2.23 0.00 0.00 4.26
7200 9098 9.605275 TTTTTCATGATAGAGTAATCTGGTGAG 57.395 33.333 2.23 0.00 0.00 3.51
7201 9099 9.383519 GTTTTTCATGATAGAGTAATCTGGTGA 57.616 33.333 2.23 0.00 0.00 4.02
7202 9100 9.166173 TGTTTTTCATGATAGAGTAATCTGGTG 57.834 33.333 2.23 0.00 0.00 4.17
7203 9101 9.167311 GTGTTTTTCATGATAGAGTAATCTGGT 57.833 33.333 2.23 0.00 0.00 4.00
7204 9102 8.616076 GGTGTTTTTCATGATAGAGTAATCTGG 58.384 37.037 2.23 0.00 0.00 3.86
7205 9103 8.616076 GGGTGTTTTTCATGATAGAGTAATCTG 58.384 37.037 2.23 0.00 0.00 2.90
7206 9104 8.552296 AGGGTGTTTTTCATGATAGAGTAATCT 58.448 33.333 0.00 0.00 0.00 2.40
7207 9105 8.616076 CAGGGTGTTTTTCATGATAGAGTAATC 58.384 37.037 0.00 0.00 0.00 1.75
7208 9106 7.557719 CCAGGGTGTTTTTCATGATAGAGTAAT 59.442 37.037 0.00 0.00 0.00 1.89
7209 9107 6.884295 CCAGGGTGTTTTTCATGATAGAGTAA 59.116 38.462 0.00 0.00 0.00 2.24
7210 9108 6.414732 CCAGGGTGTTTTTCATGATAGAGTA 58.585 40.000 0.00 0.00 0.00 2.59
7211 9109 5.256474 CCAGGGTGTTTTTCATGATAGAGT 58.744 41.667 0.00 0.00 0.00 3.24
7212 9110 4.641989 CCCAGGGTGTTTTTCATGATAGAG 59.358 45.833 0.00 0.00 0.00 2.43
7213 9111 4.044065 ACCCAGGGTGTTTTTCATGATAGA 59.956 41.667 11.70 0.00 32.98 1.98
7214 9112 4.344104 ACCCAGGGTGTTTTTCATGATAG 58.656 43.478 11.70 0.00 32.98 2.08
7215 9113 4.396357 ACCCAGGGTGTTTTTCATGATA 57.604 40.909 11.70 0.00 32.98 2.15
7216 9114 3.258722 ACCCAGGGTGTTTTTCATGAT 57.741 42.857 11.70 0.00 32.98 2.45
7217 9115 2.765689 ACCCAGGGTGTTTTTCATGA 57.234 45.000 11.70 0.00 32.98 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.