AutoCloner

Multiple sequence alignment - TraesCS3D01G459300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G459300	chr3D	100.000	4959	0	0	1	4959	564611033	564606075	0.000000e+00	9158.0
1	TraesCS3D01G459300	chr3D	89.873	158	15	1	1	157	564620400	564620243	8.420000e-48	202.0
2	TraesCS3D01G459300	chr3D	89.744	156	15	1	3	157	564611800	564611645	1.090000e-46	198.0
3	TraesCS3D01G459300	chr3D	89.744	156	14	2	3	157	564622524	564622370	1.090000e-46	198.0
4	TraesCS3D01G459300	chr3D	92.424	66	5	0	92	157	564611176	564611111	1.470000e-15	95.3
5	TraesCS3D01G459300	chr3D	94.545	55	2	1	4028	4081	564606956	564606902	3.180000e-12	84.2
6	TraesCS3D01G459300	chr3D	94.545	55	2	1	4078	4132	564607006	564606953	3.180000e-12	84.2
7	TraesCS3D01G459300	chr5D	94.395	2034	63	24	153	2147	484921204	484923225	0.000000e+00	3077.0
8	TraesCS3D01G459300	chr5D	96.174	758	23	4	2169	2924	484923211	484923964	0.000000e+00	1234.0
9	TraesCS3D01G459300	chr5D	97.293	702	14	4	4262	4959	484925892	484926592	0.000000e+00	1186.0
10	TraesCS3D01G459300	chr5D	95.643	482	15	3	3904	4380	484925416	484925896	0.000000e+00	769.0
11	TraesCS3D01G459300	chr5D	90.000	170	16	1	1	169	484921078	484921247	8.360000e-53	219.0
12	TraesCS3D01G459300	chr5D	92.593	108	6	2	52	157	484920895	484921002	2.390000e-33	154.0
13	TraesCS3D01G459300	chr5D	94.545	55	2	1	4028	4081	484925589	484925643	3.180000e-12	84.2
14	TraesCS3D01G459300	chr5D	92.727	55	3	1	4078	4132	484925539	484925592	1.480000e-10	78.7
15	TraesCS3D01G459300	chr5D	97.778	45	0	1	123	166	484919865	484919909	5.320000e-10	76.8
16	TraesCS3D01G459300	chr2A	97.267	1061	28	1	2846	3905	727910907	727909847	0.000000e+00	1797.0
17	TraesCS3D01G459300	chr2A	93.470	1072	43	17	3904	4959	727899315	727898255	0.000000e+00	1567.0
18	TraesCS3D01G459300	chr2A	92.890	1097	40	12	642	1708	727912898	727911810	0.000000e+00	1559.0
19	TraesCS3D01G459300	chr2A	95.418	502	20	2	2167	2667	727911411	727910912	0.000000e+00	797.0
20	TraesCS3D01G459300	chr2A	96.098	410	12	4	1745	2151	727911803	727911395	0.000000e+00	665.0
21	TraesCS3D01G459300	chr2A	91.667	156	11	2	3	157	727913984	727913830	1.080000e-51	215.0
22	TraesCS3D01G459300	chr2A	94.595	74	4	0	126	199	727914051	727913978	1.130000e-21	115.0
23	TraesCS3D01G459300	chr2A	98.148	54	1	0	4028	4081	727899145	727899092	1.470000e-15	95.3
24	TraesCS3D01G459300	chr3B	92.094	1151	82	9	2757	3905	735218577	735219720	0.000000e+00	1613.0
25	TraesCS3D01G459300	chr3B	83.396	530	38	13	1142	1649	735216935	735217436	3.520000e-121	446.0
26	TraesCS3D01G459300	chr3B	80.992	605	61	25	488	1059	735216068	735216651	9.860000e-117	431.0
27	TraesCS3D01G459300	chr3B	89.118	340	28	5	2365	2703	735217978	735218309	9.930000e-112	414.0
28	TraesCS3D01G459300	chr3B	87.619	315	23	11	1786	2098	735217521	735217821	7.900000e-93	351.0
29	TraesCS3D01G459300	chr7A	89.193	657	56	13	4309	4959	714696306	714695659	0.000000e+00	806.0
30	TraesCS3D01G459300	chr7A	74.488	537	118	14	3366	3892	701878226	701877699	1.080000e-51	215.0
31	TraesCS3D01G459300	chr6B	89.286	532	26	14	636	1146	551661499	551660978	5.410000e-179	638.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G459300	chr3D	564606075	564611033	4958	True	9158.00	9158	100.000000	1	4959	1	chr3D.!!$R1	4958
1	TraesCS3D01G459300	chr5D	484919865	484926592	6727	False	764.30	3077	94.572000	1	4959	9	chr5D.!!$F1	4958
2	TraesCS3D01G459300	chr2A	727909847	727914051	4204	True	858.00	1797	94.655833	3	3905	6	chr2A.!!$R2	3902
3	TraesCS3D01G459300	chr2A	727898255	727899315	1060	True	831.15	1567	95.809000	3904	4959	2	chr2A.!!$R1	1055
4	TraesCS3D01G459300	chr3B	735216068	735219720	3652	False	651.00	1613	86.643800	488	3905	5	chr3B.!!$F1	3417
5	TraesCS3D01G459300	chr7A	714695659	714696306	647	True	806.00	806	89.193000	4309	4959	1	chr7A.!!$R2	650
6	TraesCS3D01G459300	chr7A	701877699	701878226	527	True	215.00	215	74.488000	3366	3892	1	chr7A.!!$R1	526
7	TraesCS3D01G459300	chr6B	551660978	551661499	521	True	638.00	638	89.286000	636	1146	1	chr6B.!!$R1	510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
24	39	0.315886	TCAAACTCGAGCCGCAACTA	59.684	50.0	13.61	0.00	2.24	F
963	3027	0.608035	CCAACACGGCTGTACCCATT	60.608	55.0	0.00	33.26	3.16	F
1168	3448	0.535335	TCTCTTTTCGGTGGCGCTAT	59.465	50.0	7.64	0.00	2.97	F
2154	4489	0.871057	CACACACACACACACACACA	59.129	50.0	0.00	0.00	3.72	F
2156	4491	0.871057	CACACACACACACACACACA	59.129	50.0	0.00	0.00	3.72	F
2162	4497	0.871057	CACACACACACACACACACA	59.129	50.0	0.00	0.00	3.72	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1168	3448	2.558821	CCAATTTCAACGCGGCGA	59.441	55.556	30.94	6.23	0.00	5.54	R
2135	4470	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82	R
2145	4480	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82	R
3499	6276	3.450457	TGTTGTTTTCACCTGCTGGAATT	59.550	39.130	17.64	0.00	37.04	2.17	R
3525	6302	5.591877	GCTTTTCCTCCATCATCAGTTATGT	59.408	40.000	0.00	0.00	36.89	2.29	R
4087	7492	5.969423	TCATTTGCATTCAAATCTCTTCCC	58.031	37.500	0.00	0.00	46.79	3.97	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	39	0.315886	TCAAACTCGAGCCGCAACTA	59.684	50.000	13.61	0.00	0.00	2.24
25	40	1.144969	CAAACTCGAGCCGCAACTAA	58.855	50.000	13.61	0.00	0.00	2.24
27	42	2.094762	AACTCGAGCCGCAACTAAAT	57.905	45.000	13.61	0.00	0.00	1.40
28	43	2.094762	ACTCGAGCCGCAACTAAATT	57.905	45.000	13.61	0.00	0.00	1.82
73	1108	3.252964	TGCGAGGTTGCAATGTCG	58.747	55.556	22.35	22.35	43.02	4.35
95	1130	1.595794	GACGCAACTTTTCAACCTCGA	59.404	47.619	0.00	0.00	0.00	4.04
98	1133	2.031683	CGCAACTTTTCAACCTCGAAGT	59.968	45.455	0.00	0.00	34.03	3.01
113	1148	1.797025	GAAGTCACTCAGGGTTTCCG	58.203	55.000	0.00	0.00	38.33	4.30
118	1155	1.210967	TCACTCAGGGTTTCCGTTGTT	59.789	47.619	0.00	0.00	38.33	2.83
236	2256	2.217353	CAACGTTGCAATGTCGAGAG	57.783	50.000	23.95	8.82	0.00	3.20
298	2319	3.037549	TCAGGGGTTCAAACTGCATTTT	58.962	40.909	0.00	0.00	32.42	1.82
356	2377	1.062525	GGGAATCGCAACGACATGC	59.937	57.895	0.00	0.00	39.18	4.06
407	2428	1.396653	ACGTGGAAGGTACCGGATAG	58.603	55.000	9.46	0.55	30.20	2.08
613	2636	9.914131	ATTTTGTTGCTCCTTTTCTACTAATTC	57.086	29.630	0.00	0.00	0.00	2.17
909	2973	1.323271	TTGTTGCCCAAAGCCGACAA	61.323	50.000	0.00	0.00	41.46	3.18
963	3027	0.608035	CCAACACGGCTGTACCCATT	60.608	55.000	0.00	0.00	33.26	3.16
983	3047	2.125832	TAAACGGGAAGCCGCTCG	60.126	61.111	0.00	0.00	36.58	5.03
1051	3130	1.367840	GCGCTCCCATCGAAGGTAT	59.632	57.895	5.87	0.00	0.00	2.73
1168	3448	0.535335	TCTCTTTTCGGTGGCGCTAT	59.465	50.000	7.64	0.00	0.00	2.97
1306	3587	3.359033	CAGCAGGAGGGATGATTTTTCA	58.641	45.455	0.00	0.00	0.00	2.69
1441	3747	7.391554	GGATAAATGAACCAGCTATTGATGCTA	59.608	37.037	0.00	0.00	38.92	3.49
2134	4469	6.552859	TCGAACATAGCTTCAAAATGAACA	57.447	33.333	0.00	0.00	32.21	3.18
2135	4470	6.370593	TCGAACATAGCTTCAAAATGAACAC	58.629	36.000	0.00	0.00	32.21	3.32
2136	4471	6.017523	TCGAACATAGCTTCAAAATGAACACA	60.018	34.615	0.00	0.00	32.21	3.72
2137	4472	6.086765	CGAACATAGCTTCAAAATGAACACAC	59.913	38.462	0.00	0.00	32.21	3.82
2138	4473	6.389830	ACATAGCTTCAAAATGAACACACA	57.610	33.333	0.00	0.00	32.21	3.72
2139	4474	6.208644	ACATAGCTTCAAAATGAACACACAC	58.791	36.000	0.00	0.00	32.21	3.82
2140	4475	4.717233	AGCTTCAAAATGAACACACACA	57.283	36.364	0.00	0.00	32.21	3.72
2141	4476	4.423732	AGCTTCAAAATGAACACACACAC	58.576	39.130	0.00	0.00	32.21	3.82
2142	4477	4.082300	AGCTTCAAAATGAACACACACACA	60.082	37.500	0.00	0.00	32.21	3.72
2143	4478	4.031652	GCTTCAAAATGAACACACACACAC	59.968	41.667	0.00	0.00	32.21	3.82
2144	4479	4.773323	TCAAAATGAACACACACACACA	57.227	36.364	0.00	0.00	0.00	3.72
2145	4480	4.480541	TCAAAATGAACACACACACACAC	58.519	39.130	0.00	0.00	0.00	3.82
2146	4481	4.022849	TCAAAATGAACACACACACACACA	60.023	37.500	0.00	0.00	0.00	3.72
2147	4482	3.485947	AATGAACACACACACACACAC	57.514	42.857	0.00	0.00	0.00	3.82
2148	4483	1.884235	TGAACACACACACACACACA	58.116	45.000	0.00	0.00	0.00	3.72
2149	4484	1.533299	TGAACACACACACACACACAC	59.467	47.619	0.00	0.00	0.00	3.82
2150	4485	1.533299	GAACACACACACACACACACA	59.467	47.619	0.00	0.00	0.00	3.72
2151	4486	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
2152	4487	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
2153	4488	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
2154	4489	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
2155	4490	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
2156	4491	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
2157	4492	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
2158	4493	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
2159	4494	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
2160	4495	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
2161	4496	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
2162	4497	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
2163	4498	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
2164	4499	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
2165	4500	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
2166	4501	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
2167	4502	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
2168	4503	0.871057	CACACACACACACACACACA	59.129	50.000	0.00	0.00	0.00	3.72
2169	4504	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
2210	4545	8.970691	ACATTACAACAAGACATTTTATCTGC	57.029	30.769	0.00	0.00	0.00	4.26
2219	4554	6.446781	AGACATTTTATCTGCTGGTCATTG	57.553	37.500	0.00	0.00	0.00	2.82
2375	4713	1.421480	AGGGACGCTTAAGATACCCC	58.579	55.000	20.16	16.33	38.22	4.95
2445	4783	3.880490	GGGATAAACACAACAGTGACACA	59.120	43.478	8.59	0.00	37.04	3.72
2491	4829	6.865834	ACAAAGCCCATGGAATATTGTTTA	57.134	33.333	15.22	0.00	0.00	2.01
2628	4966	5.182380	CGGTGTGATAAATTTGGTAACCACT	59.818	40.000	0.00	0.00	30.78	4.00
2629	4967	6.294286	CGGTGTGATAAATTTGGTAACCACTT	60.294	38.462	0.00	0.00	30.78	3.16
2630	4968	7.438564	GGTGTGATAAATTTGGTAACCACTTT	58.561	34.615	0.00	0.00	30.78	2.66
2728	5068	1.067212	GAGGTGGGTATGTGCTACGAG	59.933	57.143	0.00	0.00	0.00	4.18
2743	5083	8.312896	TGTGCTACGAGTAATTGAAAATAACA	57.687	30.769	0.00	0.00	0.00	2.41
2892	5447	8.484641	TGTCTCTGATGTTTTGTCTTATGATC	57.515	34.615	0.00	0.00	0.00	2.92
3030	5806	6.406370	TCATAAGTACCCAACATCAGAACTG	58.594	40.000	0.00	0.00	0.00	3.16
3361	6138	1.673626	GGTATCGGCTTCGGTTTCACA	60.674	52.381	0.00	0.00	34.13	3.58
3499	6276	2.054021	TCAGTGTCCCATGTTCTTGGA	58.946	47.619	6.34	0.00	39.25	3.53
3525	6302	3.181477	CCAGCAGGTGAAAACAACATCAA	60.181	43.478	0.00	0.00	0.00	2.57
3731	6630	2.713167	AGCACCAAGTATATGGGAGCAT	59.287	45.455	13.11	0.00	45.18	3.79
3826	6725	9.750125	ATCAACAAGTATCAAAAAGAAAAGGTC	57.250	29.630	0.00	0.00	0.00	3.85
3861	6760	3.637911	AACATTAACACTGGGCGGATA	57.362	42.857	0.00	0.00	0.00	2.59
3966	7371	4.143179	GCGTGGTGTCAAGTAGATAACAAC	60.143	45.833	0.00	0.00	36.77	3.32
4289	7815	8.744568	TTTATTTTTGGTGCTGATTTTCCTTT	57.255	26.923	0.00	0.00	0.00	3.11
4365	7896	4.182693	TCAATGACTTACACAGGTACGG	57.817	45.455	0.00	0.00	0.00	4.02
4368	7899	0.108472	GACTTACACAGGTACGGCCC	60.108	60.000	0.00	0.00	38.26	5.80
4673	8210	7.603651	TCAAATAGTCTAGTCAGTCTTTGTCC	58.396	38.462	0.00	0.00	0.00	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	0.531974	AGTTGCGGCTCGAGTTTGAA	60.532	50.000	15.13	0.00	0.00	2.69
28	43	8.879342	AAAATACAACATCGACATTGGAAAAA	57.121	26.923	13.45	0.00	0.00	1.94
73	1108	2.348591	CGAGGTTGAAAAGTTGCGTCTC	60.349	50.000	0.00	0.00	0.00	3.36
95	1130	1.129058	ACGGAAACCCTGAGTGACTT	58.871	50.000	0.00	0.00	0.00	3.01
98	1133	0.834612	ACAACGGAAACCCTGAGTGA	59.165	50.000	0.00	0.00	0.00	3.41
113	1148	1.826487	AGTTGCGACCCCCAACAAC	60.826	57.895	0.00	0.00	43.74	3.32
118	1155	4.196778	TTGCAGTTGCGACCCCCA	62.197	61.111	0.00	0.00	45.83	4.96
170	2054	3.482783	GCAGTTGCGGCTCGAGTC	61.483	66.667	15.13	11.34	0.00	3.36
223	2243	0.035317	AGTTGCCTCTCGACATTGCA	59.965	50.000	0.00	0.00	0.00	4.08
262	2283	3.588842	ACCCCTGATGAGACAGAATTTGA	59.411	43.478	0.00	0.00	39.94	2.69
298	2319	1.988293	TGCGACCCCATCTTGAAAAA	58.012	45.000	0.00	0.00	0.00	1.94
356	2377	3.610911	AGTTGCGATCCCCTCTTTAAAG	58.389	45.455	9.04	9.04	0.00	1.85
483	2505	9.663904	AAAGAAAACAACAAAAAGAAAAAGAGC	57.336	25.926	0.00	0.00	0.00	4.09
877	2937	5.559148	TGGGCAACAAATGGAAAACTAAT	57.441	34.783	0.00	0.00	39.74	1.73
892	2956	1.299850	GTTGTCGGCTTTGGGCAAC	60.300	57.895	0.00	0.00	44.01	4.17
909	2973	1.745232	TTTCAAACAGTCAGGTGCGT	58.255	45.000	0.00	0.00	0.00	5.24
1168	3448	2.558821	CCAATTTCAACGCGGCGA	59.441	55.556	30.94	6.23	0.00	5.54
1441	3747	2.804212	CGTTCTAGTTGTTTCCCACGGT	60.804	50.000	0.00	0.00	0.00	4.83
1550	3856	3.134623	AGAGATTCAGGACACACACACAA	59.865	43.478	0.00	0.00	0.00	3.33
2134	4469	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2135	4470	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2136	4471	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2137	4472	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2138	4473	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2139	4474	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2140	4475	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2141	4476	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2142	4477	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2143	4478	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2144	4479	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2145	4480	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2146	4481	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2147	4482	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2148	4483	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2149	4484	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2150	4485	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2151	4486	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2152	4487	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2153	4488	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2154	4489	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2155	4490	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2156	4491	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2157	4492	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2158	4493	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2159	4494	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2160	4495	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2161	4496	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2162	4497	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
2163	4498	0.871057	TGTGTGTGTGTGTGTGTGTG	59.129	50.000	0.00	0.00	0.00	3.82
2164	4499	1.819928	ATGTGTGTGTGTGTGTGTGT	58.180	45.000	0.00	0.00	0.00	3.72
2165	4500	2.917701	AATGTGTGTGTGTGTGTGTG	57.082	45.000	0.00	0.00	0.00	3.82
2166	4501	3.339141	TGTAATGTGTGTGTGTGTGTGT	58.661	40.909	0.00	0.00	0.00	3.72
2167	4502	4.550577	ATGTAATGTGTGTGTGTGTGTG	57.449	40.909	0.00	0.00	0.00	3.82
2168	4503	5.586643	TGTAATGTAATGTGTGTGTGTGTGT	59.413	36.000	0.00	0.00	0.00	3.72
2169	4504	6.054035	TGTAATGTAATGTGTGTGTGTGTG	57.946	37.500	0.00	0.00	0.00	3.82
2210	4545	5.947228	TGAAAAAGAGCTACAATGACCAG	57.053	39.130	0.00	0.00	0.00	4.00
2246	4582	5.603596	ACACACATGCATGTTTCAGATTTT	58.396	33.333	29.48	1.09	39.39	1.82
2249	4586	4.278919	TGAACACACATGCATGTTTCAGAT	59.721	37.500	28.96	16.42	39.13	2.90
2506	4844	3.634910	TGTTGATCGTCCATATCTTCGGA	59.365	43.478	0.00	0.00	0.00	4.55
2728	5068	8.138712	TGAGTTGGGTGTGTTATTTTCAATTAC	58.861	33.333	0.00	0.00	0.00	1.89
2743	5083	3.443681	CACAAGTTCTTTGAGTTGGGTGT	59.556	43.478	0.00	0.00	39.21	4.16
3361	6138	3.643763	GACACACTCATCGAACTCAAGT	58.356	45.455	0.00	0.00	0.00	3.16
3499	6276	3.450457	TGTTGTTTTCACCTGCTGGAATT	59.550	39.130	17.64	0.00	37.04	2.17
3525	6302	5.591877	GCTTTTCCTCCATCATCAGTTATGT	59.408	40.000	0.00	0.00	36.89	2.29
3826	6725	7.867403	AGTGTTAATGTTATCCTGTTTTGCTTG	59.133	33.333	0.00	0.00	0.00	4.01
4014	7419	6.247229	TCATAGTACTTTGTACATGGCCAT	57.753	37.500	14.09	14.09	0.00	4.40
4087	7492	5.969423	TCATTTGCATTCAAATCTCTTCCC	58.031	37.500	0.00	0.00	46.79	3.97
4365	7896	4.462483	TGTGATTAGAAAAACTCATGGGGC	59.538	41.667	0.00	0.00	0.00	5.80
4368	7899	9.865321	AATCAATGTGATTAGAAAAACTCATGG	57.135	29.630	1.64	0.00	44.57	3.66
4498	8035	4.024556	CCCGCTTGATGTATGAATTCTGTC	60.025	45.833	7.05	0.00	0.00	3.51
4673	8210	2.270047	CAAAGCACAACAACAACAGGG	58.730	47.619	0.00	0.00	0.00	4.45

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.