Multiple sequence alignment - TraesCS3D01G456600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G456600 chr3D 100.000 3515 0 0 1 3515 562458507 562462021 0.000000e+00 6492.0
1 TraesCS3D01G456600 chr3D 87.186 1272 142 15 1750 3005 562384088 562385354 0.000000e+00 1426.0
2 TraesCS3D01G456600 chr3D 77.428 1524 264 55 1055 2545 561711662 561710186 0.000000e+00 835.0
3 TraesCS3D01G456600 chr3D 85.430 755 73 19 1004 1752 562378943 562379666 0.000000e+00 750.0
4 TraesCS3D01G456600 chr3D 75.801 1405 255 53 1052 2435 562545149 562546489 1.780000e-177 632.0
5 TraesCS3D01G456600 chr3D 74.981 1315 255 47 1052 2337 561462583 561461314 3.990000e-149 538.0
6 TraesCS3D01G456600 chr3D 78.336 637 101 19 1985 2602 561466435 561465817 9.210000e-101 377.0
7 TraesCS3D01G456600 chr3D 77.624 505 71 25 2343 2831 562349546 562350024 5.780000e-68 268.0
8 TraesCS3D01G456600 chr3D 92.857 154 10 1 3219 3371 562385387 562385540 4.570000e-54 222.0
9 TraesCS3D01G456600 chr3D 77.657 367 56 18 2484 2831 562385387 562385746 2.140000e-47 200.0
10 TraesCS3D01G456600 chr3D 89.189 148 13 1 3368 3515 562385580 562385724 7.750000e-42 182.0
11 TraesCS3D01G456600 chr3D 76.233 223 42 10 2233 2451 562516439 562516654 1.330000e-19 108.0
12 TraesCS3D01G456600 chr3D 90.789 76 4 1 2668 2740 561465809 561465734 8.030000e-17 99.0
13 TraesCS3D01G456600 chr3D 96.970 33 1 0 3186 3218 126977667 126977699 4.900000e-04 56.5
14 TraesCS3D01G456600 chr3B 92.390 2142 118 21 1004 3136 749680248 749682353 0.000000e+00 3011.0
15 TraesCS3D01G456600 chr3B 78.746 1802 273 66 1082 2831 749648287 749650030 0.000000e+00 1105.0
16 TraesCS3D01G456600 chr3B 78.009 1396 236 46 1085 2450 749025781 749024427 0.000000e+00 811.0
17 TraesCS3D01G456600 chr3B 79.826 1150 174 40 1055 2187 748779498 748778390 0.000000e+00 785.0
18 TraesCS3D01G456600 chr3B 74.964 1402 267 55 1085 2464 749979377 749980716 5.090000e-158 568.0
19 TraesCS3D01G456600 chr3B 96.066 305 11 1 3211 3515 749682350 749682653 2.440000e-136 496.0
20 TraesCS3D01G456600 chr3B 74.558 1301 240 51 1025 2281 748787213 748785960 5.280000e-133 484.0
21 TraesCS3D01G456600 chr3B 84.330 351 48 7 2197 2543 749682070 749682417 1.560000e-88 337.0
22 TraesCS3D01G456600 chr3B 91.429 70 4 1 726 795 677945320 677945387 1.040000e-15 95.3
23 TraesCS3D01G456600 chr3A 94.719 1193 49 3 2143 3321 697569219 697570411 0.000000e+00 1842.0
24 TraesCS3D01G456600 chr3A 89.444 1061 66 19 1083 2143 697567791 697568805 0.000000e+00 1297.0
25 TraesCS3D01G456600 chr3A 77.741 1505 249 58 1088 2550 697457440 697455980 0.000000e+00 845.0
26 TraesCS3D01G456600 chr3A 75.283 1149 220 41 1055 2176 697673472 697674583 1.130000e-134 490.0
27 TraesCS3D01G456600 chr3A 92.945 326 21 1 470 795 685126948 685127271 1.140000e-129 473.0
28 TraesCS3D01G456600 chr3A 73.835 1330 244 67 1055 2337 697438032 697436760 1.940000e-117 433.0
29 TraesCS3D01G456600 chr3A 76.837 803 124 35 1983 2756 697445602 697444833 2.540000e-106 396.0
30 TraesCS3D01G456600 chr3A 97.487 199 5 0 3317 3515 697575429 697575627 1.210000e-89 340.0
31 TraesCS3D01G456600 chr3A 75.909 220 44 7 2236 2451 697676196 697676410 1.730000e-18 104.0
32 TraesCS3D01G456600 chr2D 92.655 708 36 4 89 794 62568129 62567436 0.000000e+00 1005.0
33 TraesCS3D01G456600 chr2D 100.000 31 0 0 3187 3217 427968073 427968103 1.360000e-04 58.4
34 TraesCS3D01G456600 chr7D 75.394 508 111 13 292 792 477639045 477639545 2.110000e-57 233.0
35 TraesCS3D01G456600 chr7D 94.118 51 3 0 3134 3184 607031890 607031940 1.050000e-10 78.7
36 TraesCS3D01G456600 chr7D 90.000 60 5 1 3131 3189 376379175 376379234 3.760000e-10 76.8
37 TraesCS3D01G456600 chr4B 73.099 342 74 14 2420 2756 348084594 348084922 4.800000e-19 106.0
38 TraesCS3D01G456600 chr4B 73.178 343 72 16 2420 2756 348129295 348129623 4.800000e-19 106.0
39 TraesCS3D01G456600 chr5B 90.278 72 4 3 724 795 598086525 598086593 1.340000e-14 91.6
40 TraesCS3D01G456600 chr4D 85.393 89 7 2 3132 3214 37539436 37539524 1.740000e-13 87.9
41 TraesCS3D01G456600 chr4D 88.732 71 7 1 726 796 285773010 285772941 6.250000e-13 86.1
42 TraesCS3D01G456600 chr4A 89.855 69 5 1 726 794 656892619 656892553 1.740000e-13 87.9
43 TraesCS3D01G456600 chr1D 89.855 69 4 2 726 794 403373892 403373957 6.250000e-13 86.1
44 TraesCS3D01G456600 chr1A 85.057 87 7 2 3134 3214 457958600 457958514 2.250000e-12 84.2
45 TraesCS3D01G456600 chr1A 92.982 57 3 1 3134 3189 430006484 430006428 8.090000e-12 82.4
46 TraesCS3D01G456600 chr7A 90.000 60 6 0 3121 3180 729061384 729061325 1.050000e-10 78.7
47 TraesCS3D01G456600 chr6A 82.796 93 8 7 708 795 215816645 215816734 3.760000e-10 76.8
48 TraesCS3D01G456600 chr5A 92.593 54 3 1 3131 3184 223139205 223139257 3.760000e-10 76.8
49 TraesCS3D01G456600 chr2B 92.453 53 4 0 3132 3184 413455927 413455979 3.760000e-10 76.8
50 TraesCS3D01G456600 chr2A 83.750 80 11 2 457 535 71366091 71366169 1.350000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G456600 chr3D 562458507 562462021 3514 False 6492.000000 6492 100.000000 1 3515 1 chr3D.!!$F4 3514
1 TraesCS3D01G456600 chr3D 561710186 561711662 1476 True 835.000000 835 77.428000 1055 2545 1 chr3D.!!$R1 1490
2 TraesCS3D01G456600 chr3D 562378943 562379666 723 False 750.000000 750 85.430000 1004 1752 1 chr3D.!!$F3 748
3 TraesCS3D01G456600 chr3D 562545149 562546489 1340 False 632.000000 632 75.801000 1052 2435 1 chr3D.!!$F6 1383
4 TraesCS3D01G456600 chr3D 562384088 562385746 1658 False 507.500000 1426 86.722250 1750 3515 4 chr3D.!!$F7 1765
5 TraesCS3D01G456600 chr3D 561461314 561466435 5121 True 338.000000 538 81.368667 1052 2740 3 chr3D.!!$R2 1688
6 TraesCS3D01G456600 chr3B 749680248 749682653 2405 False 1281.333333 3011 90.928667 1004 3515 3 chr3B.!!$F4 2511
7 TraesCS3D01G456600 chr3B 749648287 749650030 1743 False 1105.000000 1105 78.746000 1082 2831 1 chr3B.!!$F2 1749
8 TraesCS3D01G456600 chr3B 749024427 749025781 1354 True 811.000000 811 78.009000 1085 2450 1 chr3B.!!$R3 1365
9 TraesCS3D01G456600 chr3B 748778390 748779498 1108 True 785.000000 785 79.826000 1055 2187 1 chr3B.!!$R1 1132
10 TraesCS3D01G456600 chr3B 749979377 749980716 1339 False 568.000000 568 74.964000 1085 2464 1 chr3B.!!$F3 1379
11 TraesCS3D01G456600 chr3B 748785960 748787213 1253 True 484.000000 484 74.558000 1025 2281 1 chr3B.!!$R2 1256
12 TraesCS3D01G456600 chr3A 697567791 697570411 2620 False 1569.500000 1842 92.081500 1083 3321 2 chr3A.!!$F3 2238
13 TraesCS3D01G456600 chr3A 697455980 697457440 1460 True 845.000000 845 77.741000 1088 2550 1 chr3A.!!$R3 1462
14 TraesCS3D01G456600 chr3A 697436760 697438032 1272 True 433.000000 433 73.835000 1055 2337 1 chr3A.!!$R1 1282
15 TraesCS3D01G456600 chr3A 697444833 697445602 769 True 396.000000 396 76.837000 1983 2756 1 chr3A.!!$R2 773
16 TraesCS3D01G456600 chr3A 697673472 697676410 2938 False 297.000000 490 75.596000 1055 2451 2 chr3A.!!$F4 1396
17 TraesCS3D01G456600 chr2D 62567436 62568129 693 True 1005.000000 1005 92.655000 89 794 1 chr2D.!!$R1 705
18 TraesCS3D01G456600 chr7D 477639045 477639545 500 False 233.000000 233 75.394000 292 792 1 chr7D.!!$F2 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 745 0.110486 TTGTGGAGGGTCTCTTTGCC 59.890 55.000 0.00 0.00 0.00 4.52 F
1423 4238 0.107214 ATGCCAGGGTATCCAACACG 60.107 55.000 0.00 0.00 36.23 4.49 F
2327 7253 1.032014 GGCTGTGCTTTGGTCTTTGA 58.968 50.000 0.00 0.00 0.00 2.69 F
2328 7254 1.408702 GGCTGTGCTTTGGTCTTTGAA 59.591 47.619 0.00 0.00 0.00 2.69 F
2621 7547 1.812922 CAGATGCTCAGGCCACGTC 60.813 63.158 5.01 2.09 37.74 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2609 7535 0.456312 GTTCTACGACGTGGCCTGAG 60.456 60.000 11.56 0.0 0.00 3.35 R
3193 8180 0.115745 ACTCCCTCCGTCCCAAACTA 59.884 55.000 0.00 0.0 0.00 2.24 R
3199 8186 1.138464 GACAAATACTCCCTCCGTCCC 59.862 57.143 0.00 0.0 0.00 4.46 R
3200 8187 1.829222 TGACAAATACTCCCTCCGTCC 59.171 52.381 0.00 0.0 0.00 4.79 R
3442 9237 5.475719 CACCGTGGTTAATCTTAGAAGACA 58.524 41.667 0.00 0.0 37.98 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.254178 ACTATGGGACTTGCTGGCTG 59.746 55.000 0.00 0.00 0.00 4.85
20 21 0.543277 CTATGGGACTTGCTGGCTGA 59.457 55.000 0.00 0.00 0.00 4.26
21 22 0.991146 TATGGGACTTGCTGGCTGAA 59.009 50.000 0.00 0.00 0.00 3.02
24 25 0.324943 GGGACTTGCTGGCTGAAGTA 59.675 55.000 0.00 0.00 32.47 2.24
25 26 1.677217 GGGACTTGCTGGCTGAAGTAG 60.677 57.143 0.00 0.00 32.47 2.57
26 27 1.276421 GGACTTGCTGGCTGAAGTAGA 59.724 52.381 0.00 0.00 32.47 2.59
28 29 3.194062 GACTTGCTGGCTGAAGTAGATC 58.806 50.000 0.00 0.00 32.47 2.75
29 30 2.836981 ACTTGCTGGCTGAAGTAGATCT 59.163 45.455 0.00 0.00 30.47 2.75
30 31 4.026744 ACTTGCTGGCTGAAGTAGATCTA 58.973 43.478 0.00 0.00 30.47 1.98
31 32 4.142049 ACTTGCTGGCTGAAGTAGATCTAC 60.142 45.833 22.97 22.97 36.35 2.59
32 33 3.365472 TGCTGGCTGAAGTAGATCTACA 58.635 45.455 29.85 12.45 38.48 2.74
33 34 3.963374 TGCTGGCTGAAGTAGATCTACAT 59.037 43.478 29.85 21.12 38.48 2.29
34 35 4.202192 TGCTGGCTGAAGTAGATCTACATG 60.202 45.833 29.85 18.35 38.48 3.21
36 37 5.452496 GCTGGCTGAAGTAGATCTACATGAA 60.452 44.000 29.85 14.22 38.48 2.57
37 38 6.154203 TGGCTGAAGTAGATCTACATGAAG 57.846 41.667 29.85 21.65 38.48 3.02
38 39 5.893824 TGGCTGAAGTAGATCTACATGAAGA 59.106 40.000 29.85 9.32 38.48 2.87
39 40 6.381133 TGGCTGAAGTAGATCTACATGAAGAA 59.619 38.462 29.85 11.43 38.48 2.52
40 41 7.093333 TGGCTGAAGTAGATCTACATGAAGAAA 60.093 37.037 29.85 12.86 38.48 2.52
42 43 7.437862 GCTGAAGTAGATCTACATGAAGAAAGG 59.562 40.741 29.85 12.11 38.48 3.11
44 45 9.475620 TGAAGTAGATCTACATGAAGAAAGGTA 57.524 33.333 29.85 3.66 38.48 3.08
47 48 9.702253 AGTAGATCTACATGAAGAAAGGTAAGA 57.298 33.333 29.85 0.00 38.48 2.10
48 49 9.738832 GTAGATCTACATGAAGAAAGGTAAGAC 57.261 37.037 24.97 0.00 36.15 3.01
50 51 5.408356 TCTACATGAAGAAAGGTAAGACGC 58.592 41.667 0.00 0.00 0.00 5.19
51 52 3.335579 ACATGAAGAAAGGTAAGACGCC 58.664 45.455 0.00 0.00 0.00 5.68
52 53 3.244422 ACATGAAGAAAGGTAAGACGCCA 60.244 43.478 0.00 0.00 0.00 5.69
53 54 3.695830 TGAAGAAAGGTAAGACGCCAT 57.304 42.857 0.00 0.00 0.00 4.40
54 55 3.596214 TGAAGAAAGGTAAGACGCCATC 58.404 45.455 0.00 0.00 0.00 3.51
55 56 3.260884 TGAAGAAAGGTAAGACGCCATCT 59.739 43.478 0.00 0.00 40.46 2.90
56 57 3.252974 AGAAAGGTAAGACGCCATCTG 57.747 47.619 0.00 0.00 37.88 2.90
62 63 0.392461 TAAGACGCCATCTGTTGGGC 60.392 55.000 6.87 0.00 46.55 5.36
67 68 3.944123 CCATCTGTTGGGCATGGG 58.056 61.111 0.00 0.00 42.33 4.00
68 69 1.307309 CCATCTGTTGGGCATGGGA 59.693 57.895 0.00 0.00 42.33 4.37
69 70 0.324552 CCATCTGTTGGGCATGGGAA 60.325 55.000 0.00 0.00 42.33 3.97
70 71 1.108776 CATCTGTTGGGCATGGGAAG 58.891 55.000 0.00 0.00 0.00 3.46
79 80 2.275380 GCATGGGAAGCCAACGGTT 61.275 57.895 0.00 0.00 0.00 4.44
80 81 1.883021 CATGGGAAGCCAACGGTTC 59.117 57.895 0.00 0.00 44.21 3.62
87 88 2.014857 GAAGCCAACGGTTCCTATTCC 58.985 52.381 0.00 0.00 40.01 3.01
223 226 2.126071 CGCTGTTGGACGTCGGAT 60.126 61.111 9.92 0.00 0.00 4.18
226 229 1.211969 CTGTTGGACGTCGGATCGT 59.788 57.895 9.92 5.54 46.88 3.73
270 273 0.535335 CAAGCTACGTGCCCCTTCTA 59.465 55.000 0.00 0.00 44.23 2.10
272 275 0.613853 AGCTACGTGCCCCTTCTACA 60.614 55.000 0.00 0.00 44.23 2.74
273 276 0.248289 GCTACGTGCCCCTTCTACAA 59.752 55.000 0.00 0.00 35.15 2.41
274 277 2.005560 GCTACGTGCCCCTTCTACAAC 61.006 57.143 0.00 0.00 35.15 3.32
275 278 0.609662 TACGTGCCCCTTCTACAACC 59.390 55.000 0.00 0.00 0.00 3.77
276 279 1.373435 CGTGCCCCTTCTACAACCA 59.627 57.895 0.00 0.00 0.00 3.67
277 280 0.953960 CGTGCCCCTTCTACAACCAC 60.954 60.000 0.00 0.00 0.00 4.16
278 281 0.400594 GTGCCCCTTCTACAACCACT 59.599 55.000 0.00 0.00 0.00 4.00
279 282 1.145571 TGCCCCTTCTACAACCACTT 58.854 50.000 0.00 0.00 0.00 3.16
280 283 1.073284 TGCCCCTTCTACAACCACTTC 59.927 52.381 0.00 0.00 0.00 3.01
281 284 1.351350 GCCCCTTCTACAACCACTTCT 59.649 52.381 0.00 0.00 0.00 2.85
317 320 4.984161 GTGAAACAATCAACCACATCCTTG 59.016 41.667 0.00 0.00 40.50 3.61
488 491 3.614092 CTCACACTATGCTTGTGGGAAT 58.386 45.455 9.67 0.00 46.79 3.01
512 515 0.238817 GAAACACCGCAACGCCATTA 59.761 50.000 0.00 0.00 0.00 1.90
548 551 0.889186 ACCATCACTCCAAACGGCAC 60.889 55.000 0.00 0.00 0.00 5.01
551 554 0.321653 ATCACTCCAAACGGCACTCC 60.322 55.000 0.00 0.00 0.00 3.85
588 591 0.321653 GGACGCACTTGGAGATTGGT 60.322 55.000 0.00 0.00 0.00 3.67
624 627 8.477419 AAGGGTGACATAGAATTTTTCTTTGA 57.523 30.769 12.60 0.00 39.97 2.69
661 664 1.000506 GCTAGCGGTGAATAATCCCGA 59.999 52.381 0.00 0.00 40.00 5.14
663 666 1.949465 AGCGGTGAATAATCCCGAAC 58.051 50.000 10.72 0.00 40.00 3.95
664 667 0.580104 GCGGTGAATAATCCCGAACG 59.420 55.000 10.72 0.00 40.00 3.95
667 670 1.865340 GGTGAATAATCCCGAACGAGC 59.135 52.381 0.00 0.00 0.00 5.03
668 671 2.483188 GGTGAATAATCCCGAACGAGCT 60.483 50.000 0.00 0.00 0.00 4.09
669 672 2.540101 GTGAATAATCCCGAACGAGCTG 59.460 50.000 0.00 0.00 0.00 4.24
670 673 2.167693 TGAATAATCCCGAACGAGCTGT 59.832 45.455 0.00 0.00 0.00 4.40
671 674 2.225068 ATAATCCCGAACGAGCTGTG 57.775 50.000 0.00 0.00 0.00 3.66
674 677 1.816863 ATCCCGAACGAGCTGTGTGT 61.817 55.000 0.00 0.00 0.00 3.72
675 678 2.310233 CCCGAACGAGCTGTGTGTG 61.310 63.158 0.00 0.00 0.00 3.82
676 679 1.591594 CCGAACGAGCTGTGTGTGT 60.592 57.895 0.00 0.00 0.00 3.72
679 682 0.301687 GAACGAGCTGTGTGTGTGTG 59.698 55.000 0.00 0.00 0.00 3.82
680 683 1.089481 AACGAGCTGTGTGTGTGTGG 61.089 55.000 0.00 0.00 0.00 4.17
681 684 1.227234 CGAGCTGTGTGTGTGTGGA 60.227 57.895 0.00 0.00 0.00 4.02
682 685 1.217585 CGAGCTGTGTGTGTGTGGAG 61.218 60.000 0.00 0.00 0.00 3.86
683 686 0.882042 GAGCTGTGTGTGTGTGGAGG 60.882 60.000 0.00 0.00 0.00 4.30
684 687 1.153168 GCTGTGTGTGTGTGGAGGT 60.153 57.895 0.00 0.00 0.00 3.85
686 689 0.815213 CTGTGTGTGTGTGGAGGTGG 60.815 60.000 0.00 0.00 0.00 4.61
689 692 1.071471 GTGTGTGTGGAGGTGGAGG 59.929 63.158 0.00 0.00 0.00 4.30
690 693 2.032681 GTGTGTGGAGGTGGAGGC 59.967 66.667 0.00 0.00 0.00 4.70
693 696 2.930019 TGTGGAGGTGGAGGCCTG 60.930 66.667 12.00 0.00 39.34 4.85
694 697 2.930562 GTGGAGGTGGAGGCCTGT 60.931 66.667 12.00 0.00 39.34 4.00
695 698 2.930019 TGGAGGTGGAGGCCTGTG 60.930 66.667 12.00 0.00 39.34 3.66
696 699 2.930562 GGAGGTGGAGGCCTGTGT 60.931 66.667 12.00 0.00 39.34 3.72
697 700 2.348998 GAGGTGGAGGCCTGTGTG 59.651 66.667 12.00 0.00 39.34 3.82
698 701 2.122413 AGGTGGAGGCCTGTGTGA 60.122 61.111 12.00 0.00 37.50 3.58
699 702 2.177594 GAGGTGGAGGCCTGTGTGAG 62.178 65.000 12.00 0.00 39.34 3.51
700 703 2.359230 GTGGAGGCCTGTGTGAGC 60.359 66.667 12.00 0.00 0.00 4.26
705 708 2.113986 GGCCTGTGTGAGCCTTGT 59.886 61.111 0.00 0.00 46.14 3.16
706 709 1.374947 GGCCTGTGTGAGCCTTGTA 59.625 57.895 0.00 0.00 46.14 2.41
707 710 0.250727 GGCCTGTGTGAGCCTTGTAA 60.251 55.000 0.00 0.00 46.14 2.41
708 711 1.614317 GGCCTGTGTGAGCCTTGTAAT 60.614 52.381 0.00 0.00 46.14 1.89
710 713 3.343617 GCCTGTGTGAGCCTTGTAATTA 58.656 45.455 0.00 0.00 0.00 1.40
712 715 3.370978 CCTGTGTGAGCCTTGTAATTACG 59.629 47.826 10.92 0.00 0.00 3.18
713 716 3.331150 TGTGTGAGCCTTGTAATTACGG 58.669 45.455 10.92 7.97 0.00 4.02
714 717 3.244284 TGTGTGAGCCTTGTAATTACGGT 60.244 43.478 10.92 2.57 0.00 4.83
715 718 3.749609 GTGTGAGCCTTGTAATTACGGTT 59.250 43.478 10.92 5.02 0.00 4.44
716 719 3.749088 TGTGAGCCTTGTAATTACGGTTG 59.251 43.478 10.92 1.27 0.00 3.77
718 721 4.931002 GTGAGCCTTGTAATTACGGTTGTA 59.069 41.667 10.92 0.00 0.00 2.41
719 722 5.409214 GTGAGCCTTGTAATTACGGTTGTAA 59.591 40.000 10.92 0.00 44.27 2.41
734 737 4.563337 GTTGTAAACTTTGTGGAGGGTC 57.437 45.455 0.00 0.00 45.32 4.46
735 738 4.204799 GTTGTAAACTTTGTGGAGGGTCT 58.795 43.478 0.00 0.00 45.32 3.85
736 739 4.081322 TGTAAACTTTGTGGAGGGTCTC 57.919 45.455 0.00 0.00 0.00 3.36
737 740 3.714798 TGTAAACTTTGTGGAGGGTCTCT 59.285 43.478 0.00 0.00 0.00 3.10
739 742 3.953542 AACTTTGTGGAGGGTCTCTTT 57.046 42.857 0.00 0.00 0.00 2.52
740 743 3.214696 ACTTTGTGGAGGGTCTCTTTG 57.785 47.619 0.00 0.00 0.00 2.77
741 744 1.882623 CTTTGTGGAGGGTCTCTTTGC 59.117 52.381 0.00 0.00 0.00 3.68
742 745 0.110486 TTGTGGAGGGTCTCTTTGCC 59.890 55.000 0.00 0.00 0.00 4.52
746 749 4.358102 AGGGTCTCTTTGCCCCTT 57.642 55.556 0.00 0.00 46.92 3.95
748 751 0.860457 AGGGTCTCTTTGCCCCTTTT 59.140 50.000 0.00 0.00 46.92 2.27
792 795 7.851508 GCATACTCGTGCATATTCTAGAAAAA 58.148 34.615 9.71 1.10 44.43 1.94
820 823 9.284968 AGTTTAACTATCAACATGGTATATGCC 57.715 33.333 2.31 2.31 0.00 4.40
821 824 8.512138 GTTTAACTATCAACATGGTATATGCCC 58.488 37.037 7.44 0.00 0.00 5.36
823 826 6.199557 ACTATCAACATGGTATATGCCCAA 57.800 37.500 7.44 0.00 35.14 4.12
824 827 6.003950 ACTATCAACATGGTATATGCCCAAC 58.996 40.000 7.44 0.00 35.14 3.77
825 828 4.518278 TCAACATGGTATATGCCCAACT 57.482 40.909 7.44 0.00 35.14 3.16
826 829 4.460263 TCAACATGGTATATGCCCAACTC 58.540 43.478 7.44 0.00 35.14 3.01
828 831 4.729552 ACATGGTATATGCCCAACTCAT 57.270 40.909 7.44 0.00 35.14 2.90
829 832 5.841267 ACATGGTATATGCCCAACTCATA 57.159 39.130 7.44 0.00 35.14 2.15
830 833 6.199557 ACATGGTATATGCCCAACTCATAA 57.800 37.500 7.44 0.00 35.14 1.90
832 835 7.066142 ACATGGTATATGCCCAACTCATAAAA 58.934 34.615 7.44 0.00 35.14 1.52
855 858 0.601558 CATGATAGCATGCCTTGGCC 59.398 55.000 15.66 0.00 44.76 5.36
856 859 0.541296 ATGATAGCATGCCTTGGCCC 60.541 55.000 15.66 0.00 32.31 5.80
857 860 1.152694 GATAGCATGCCTTGGCCCA 60.153 57.895 15.66 0.00 0.00 5.36
858 861 0.756442 GATAGCATGCCTTGGCCCAA 60.756 55.000 15.66 0.00 0.00 4.12
859 862 0.325484 ATAGCATGCCTTGGCCCAAA 60.325 50.000 15.66 0.00 0.00 3.28
860 863 0.971959 TAGCATGCCTTGGCCCAAAG 60.972 55.000 15.66 0.00 0.00 2.77
861 864 2.586293 GCATGCCTTGGCCCAAAGT 61.586 57.895 6.36 0.00 0.00 2.66
862 865 1.257055 GCATGCCTTGGCCCAAAGTA 61.257 55.000 6.36 0.00 0.00 2.24
863 866 1.265236 CATGCCTTGGCCCAAAGTAA 58.735 50.000 9.35 0.00 0.00 2.24
864 867 1.205417 CATGCCTTGGCCCAAAGTAAG 59.795 52.381 9.35 0.00 0.00 2.34
865 868 1.184970 TGCCTTGGCCCAAAGTAAGC 61.185 55.000 9.35 0.00 0.00 3.09
866 869 0.900182 GCCTTGGCCCAAAGTAAGCT 60.900 55.000 0.00 0.00 0.00 3.74
868 871 1.547675 CCTTGGCCCAAAGTAAGCTGA 60.548 52.381 0.00 0.00 0.00 4.26
869 872 2.238521 CTTGGCCCAAAGTAAGCTGAA 58.761 47.619 0.00 0.00 0.00 3.02
870 873 2.603075 TGGCCCAAAGTAAGCTGAAT 57.397 45.000 0.00 0.00 0.00 2.57
871 874 2.888212 TGGCCCAAAGTAAGCTGAATT 58.112 42.857 0.00 0.00 0.00 2.17
873 876 3.006752 TGGCCCAAAGTAAGCTGAATTTG 59.993 43.478 15.73 15.73 33.45 2.32
875 878 3.006859 GCCCAAAGTAAGCTGAATTTGGT 59.993 43.478 31.62 0.00 46.67 3.67
877 880 5.709966 CCCAAAGTAAGCTGAATTTGGTAC 58.290 41.667 31.62 10.38 46.67 3.34
878 881 5.476945 CCCAAAGTAAGCTGAATTTGGTACT 59.523 40.000 31.62 12.33 46.67 2.73
879 882 6.349363 CCCAAAGTAAGCTGAATTTGGTACTC 60.349 42.308 31.62 0.00 46.67 2.59
880 883 6.349363 CCAAAGTAAGCTGAATTTGGTACTCC 60.349 42.308 28.02 0.00 44.28 3.85
881 884 4.504858 AGTAAGCTGAATTTGGTACTCCG 58.495 43.478 0.00 0.00 36.30 4.63
882 885 2.403252 AGCTGAATTTGGTACTCCGG 57.597 50.000 0.00 0.00 36.30 5.14
883 886 1.628846 AGCTGAATTTGGTACTCCGGT 59.371 47.619 0.00 0.00 36.30 5.28
884 887 2.007608 GCTGAATTTGGTACTCCGGTC 58.992 52.381 0.00 0.00 36.30 4.79
885 888 2.354805 GCTGAATTTGGTACTCCGGTCT 60.355 50.000 0.00 0.00 36.30 3.85
886 889 3.868754 GCTGAATTTGGTACTCCGGTCTT 60.869 47.826 0.00 0.00 36.30 3.01
887 890 4.324267 CTGAATTTGGTACTCCGGTCTTT 58.676 43.478 0.00 0.00 36.30 2.52
889 892 5.240121 TGAATTTGGTACTCCGGTCTTTAC 58.760 41.667 0.00 0.00 36.30 2.01
890 893 5.012354 TGAATTTGGTACTCCGGTCTTTACT 59.988 40.000 0.00 0.00 36.30 2.24
891 894 4.961438 TTTGGTACTCCGGTCTTTACTT 57.039 40.909 0.00 0.00 36.30 2.24
892 895 4.525912 TTGGTACTCCGGTCTTTACTTC 57.474 45.455 0.00 0.00 36.30 3.01
893 896 3.771216 TGGTACTCCGGTCTTTACTTCT 58.229 45.455 0.00 0.00 36.30 2.85
895 898 3.130164 GGTACTCCGGTCTTTACTTCTCC 59.870 52.174 0.00 0.00 0.00 3.71
896 899 2.885616 ACTCCGGTCTTTACTTCTCCA 58.114 47.619 0.00 0.00 0.00 3.86
897 900 3.442076 ACTCCGGTCTTTACTTCTCCAT 58.558 45.455 0.00 0.00 0.00 3.41
899 902 5.021458 ACTCCGGTCTTTACTTCTCCATTA 58.979 41.667 0.00 0.00 0.00 1.90
900 903 5.482878 ACTCCGGTCTTTACTTCTCCATTAA 59.517 40.000 0.00 0.00 0.00 1.40
901 904 6.013984 ACTCCGGTCTTTACTTCTCCATTAAA 60.014 38.462 0.00 0.00 0.00 1.52
902 905 6.954232 TCCGGTCTTTACTTCTCCATTAAAT 58.046 36.000 0.00 0.00 0.00 1.40
903 906 7.046033 TCCGGTCTTTACTTCTCCATTAAATC 58.954 38.462 0.00 0.00 0.00 2.17
906 909 8.893727 CGGTCTTTACTTCTCCATTAAATCATT 58.106 33.333 0.00 0.00 0.00 2.57
910 913 9.305925 CTTTACTTCTCCATTAAATCATTTGCC 57.694 33.333 0.00 0.00 0.00 4.52
913 916 7.550712 ACTTCTCCATTAAATCATTTGCCTTC 58.449 34.615 0.00 0.00 0.00 3.46
914 917 6.469782 TCTCCATTAAATCATTTGCCTTCC 57.530 37.500 0.00 0.00 0.00 3.46
915 918 5.363580 TCTCCATTAAATCATTTGCCTTCCC 59.636 40.000 0.00 0.00 0.00 3.97
916 919 5.279685 TCCATTAAATCATTTGCCTTCCCT 58.720 37.500 0.00 0.00 0.00 4.20
917 920 6.439487 TCCATTAAATCATTTGCCTTCCCTA 58.561 36.000 0.00 0.00 0.00 3.53
919 922 7.069826 TCCATTAAATCATTTGCCTTCCCTAAG 59.930 37.037 0.00 0.00 0.00 2.18
920 923 7.069826 CCATTAAATCATTTGCCTTCCCTAAGA 59.930 37.037 0.00 0.00 34.37 2.10
921 924 7.645058 TTAAATCATTTGCCTTCCCTAAGAG 57.355 36.000 0.00 0.00 34.37 2.85
922 925 3.652057 TCATTTGCCTTCCCTAAGAGG 57.348 47.619 0.00 0.00 34.37 3.69
923 926 2.027385 CATTTGCCTTCCCTAAGAGGC 58.973 52.381 7.41 7.41 46.82 4.70
925 928 2.263895 TTGCCTTCCCTAAGAGGCTA 57.736 50.000 14.69 5.29 46.77 3.93
927 930 0.759959 GCCTTCCCTAAGAGGCTACC 59.240 60.000 7.11 0.00 43.58 3.18
928 931 1.041437 CCTTCCCTAAGAGGCTACCG 58.959 60.000 0.00 0.00 34.37 4.02
929 932 1.041437 CTTCCCTAAGAGGCTACCGG 58.959 60.000 0.00 0.00 34.37 5.28
930 933 0.398098 TTCCCTAAGAGGCTACCGGG 60.398 60.000 6.32 0.00 32.73 5.73
931 934 1.075450 CCCTAAGAGGCTACCGGGT 60.075 63.158 6.32 4.46 32.73 5.28
932 935 1.400530 CCCTAAGAGGCTACCGGGTG 61.401 65.000 10.66 0.00 32.73 4.61
933 936 1.400530 CCTAAGAGGCTACCGGGTGG 61.401 65.000 10.66 8.30 42.84 4.61
934 937 1.382146 TAAGAGGCTACCGGGTGGG 60.382 63.158 10.66 3.73 40.75 4.61
935 938 2.884179 TAAGAGGCTACCGGGTGGGG 62.884 65.000 10.66 1.06 41.60 4.96
952 955 2.045926 GCCCGAAGCCACTGTCAT 60.046 61.111 0.00 0.00 34.35 3.06
953 956 1.675641 GCCCGAAGCCACTGTCATT 60.676 57.895 0.00 0.00 34.35 2.57
954 957 1.926511 GCCCGAAGCCACTGTCATTG 61.927 60.000 0.00 0.00 34.35 2.82
956 959 1.081892 CCGAAGCCACTGTCATTGAG 58.918 55.000 0.00 0.00 0.00 3.02
957 960 1.338105 CCGAAGCCACTGTCATTGAGA 60.338 52.381 0.00 0.00 0.00 3.27
959 962 3.430790 CCGAAGCCACTGTCATTGAGATA 60.431 47.826 0.00 0.00 0.00 1.98
960 963 4.183865 CGAAGCCACTGTCATTGAGATAA 58.816 43.478 0.00 0.00 0.00 1.75
961 964 4.813161 CGAAGCCACTGTCATTGAGATAAT 59.187 41.667 0.00 0.00 0.00 1.28
962 965 5.050499 CGAAGCCACTGTCATTGAGATAATC 60.050 44.000 0.00 0.00 0.00 1.75
963 966 5.363562 AGCCACTGTCATTGAGATAATCA 57.636 39.130 0.00 0.00 35.62 2.57
964 967 5.366460 AGCCACTGTCATTGAGATAATCAG 58.634 41.667 0.00 0.00 39.68 2.90
965 968 5.129980 AGCCACTGTCATTGAGATAATCAGA 59.870 40.000 6.69 0.00 39.68 3.27
966 969 5.819379 GCCACTGTCATTGAGATAATCAGAA 59.181 40.000 6.69 0.00 39.68 3.02
967 970 6.018098 GCCACTGTCATTGAGATAATCAGAAG 60.018 42.308 6.69 0.53 39.68 2.85
968 971 6.482641 CCACTGTCATTGAGATAATCAGAAGG 59.517 42.308 6.69 4.91 39.68 3.46
969 972 6.018098 CACTGTCATTGAGATAATCAGAAGGC 60.018 42.308 6.69 0.00 39.68 4.35
970 973 5.993055 TGTCATTGAGATAATCAGAAGGCA 58.007 37.500 0.00 0.00 39.68 4.75
973 976 7.558807 TGTCATTGAGATAATCAGAAGGCAAAT 59.441 33.333 0.00 0.00 39.68 2.32
974 977 8.074972 GTCATTGAGATAATCAGAAGGCAAATC 58.925 37.037 0.00 0.00 39.68 2.17
977 980 7.741027 TGAGATAATCAGAAGGCAAATCATC 57.259 36.000 0.00 0.00 32.77 2.92
978 981 6.713903 TGAGATAATCAGAAGGCAAATCATCC 59.286 38.462 0.00 0.00 32.77 3.51
979 982 6.607970 AGATAATCAGAAGGCAAATCATCCA 58.392 36.000 0.00 0.00 0.00 3.41
980 983 7.064866 AGATAATCAGAAGGCAAATCATCCAA 58.935 34.615 0.00 0.00 0.00 3.53
982 985 3.091545 TCAGAAGGCAAATCATCCAACC 58.908 45.455 0.00 0.00 0.00 3.77
983 986 2.167075 CAGAAGGCAAATCATCCAACCC 59.833 50.000 0.00 0.00 0.00 4.11
985 988 0.712380 AGGCAAATCATCCAACCCCT 59.288 50.000 0.00 0.00 0.00 4.79
986 989 1.079323 AGGCAAATCATCCAACCCCTT 59.921 47.619 0.00 0.00 0.00 3.95
987 990 2.314549 AGGCAAATCATCCAACCCCTTA 59.685 45.455 0.00 0.00 0.00 2.69
988 991 2.695147 GGCAAATCATCCAACCCCTTAG 59.305 50.000 0.00 0.00 0.00 2.18
989 992 3.627237 GGCAAATCATCCAACCCCTTAGA 60.627 47.826 0.00 0.00 0.00 2.10
990 993 3.633986 GCAAATCATCCAACCCCTTAGAG 59.366 47.826 0.00 0.00 0.00 2.43
991 994 4.628715 GCAAATCATCCAACCCCTTAGAGA 60.629 45.833 0.00 0.00 0.00 3.10
992 995 5.509498 CAAATCATCCAACCCCTTAGAGAA 58.491 41.667 0.00 0.00 0.00 2.87
993 996 5.796502 AATCATCCAACCCCTTAGAGAAA 57.203 39.130 0.00 0.00 0.00 2.52
995 998 5.796502 TCATCCAACCCCTTAGAGAAATT 57.203 39.130 0.00 0.00 0.00 1.82
996 999 5.755849 TCATCCAACCCCTTAGAGAAATTC 58.244 41.667 0.00 0.00 0.00 2.17
997 1000 5.252863 TCATCCAACCCCTTAGAGAAATTCA 59.747 40.000 0.00 0.00 0.00 2.57
998 1001 4.918588 TCCAACCCCTTAGAGAAATTCAC 58.081 43.478 0.00 0.00 0.00 3.18
1000 1003 4.017126 CAACCCCTTAGAGAAATTCACCC 58.983 47.826 0.00 0.00 0.00 4.61
1002 1005 2.853077 CCCCTTAGAGAAATTCACCCCT 59.147 50.000 0.00 0.00 0.00 4.79
1296 4108 3.050275 GTCAGCAACCGCAGTCCC 61.050 66.667 0.00 0.00 42.27 4.46
1298 4110 4.641645 CAGCAACCGCAGTCCCCA 62.642 66.667 0.00 0.00 42.27 4.96
1301 4113 2.669569 CAACCGCAGTCCCCAGTG 60.670 66.667 0.00 0.00 0.00 3.66
1302 4114 4.643387 AACCGCAGTCCCCAGTGC 62.643 66.667 0.00 0.00 44.55 4.40
1417 4232 0.825010 CTGCCAATGCCAGGGTATCC 60.825 60.000 0.00 0.00 36.33 2.59
1423 4238 0.107214 ATGCCAGGGTATCCAACACG 60.107 55.000 0.00 0.00 36.23 4.49
1424 4239 1.298667 GCCAGGGTATCCAACACGT 59.701 57.895 0.00 0.00 36.23 4.49
1454 4269 1.522580 GCCTCATCGCCTGGTTCTC 60.523 63.158 0.00 0.00 0.00 2.87
1580 4440 1.517832 CCGCTCTAGGGGTGTTCAG 59.482 63.158 4.95 0.00 42.54 3.02
1997 4938 4.341783 GCTGGCTGCTGGTGGACT 62.342 66.667 9.31 0.00 38.95 3.85
2121 5074 6.038271 GCCGAGTTTGTATTCTTGGATTATGT 59.962 38.462 0.00 0.00 37.40 2.29
2308 7234 3.376234 ACACAATCAAGAGCAATGATCCG 59.624 43.478 0.00 0.00 36.53 4.18
2320 7246 1.033746 ATGATCCGGCTGTGCTTTGG 61.034 55.000 0.00 0.00 0.00 3.28
2327 7253 1.032014 GGCTGTGCTTTGGTCTTTGA 58.968 50.000 0.00 0.00 0.00 2.69
2328 7254 1.408702 GGCTGTGCTTTGGTCTTTGAA 59.591 47.619 0.00 0.00 0.00 2.69
2336 7262 6.072508 TGTGCTTTGGTCTTTGAACTATCATC 60.073 38.462 0.00 0.00 34.96 2.92
2348 7274 4.818005 TGAACTATCATCGCTAGGTACGAA 59.182 41.667 0.00 0.00 43.71 3.85
2437 7363 4.445448 GGATGGGCTTGACTACATCTCATT 60.445 45.833 0.00 0.00 39.61 2.57
2448 7374 8.747538 TGACTACATCTCATTTAGCTAGTGTA 57.252 34.615 0.00 0.00 0.00 2.90
2449 7375 9.355916 TGACTACATCTCATTTAGCTAGTGTAT 57.644 33.333 0.00 0.00 0.00 2.29
2510 7436 3.003689 ACTCTGCAGTAAACATGTGTTGC 59.996 43.478 14.67 1.88 38.44 4.17
2524 7450 4.014569 TGTGTTGCCTTGTCTGCTATTA 57.985 40.909 0.00 0.00 0.00 0.98
2527 7453 4.396166 GTGTTGCCTTGTCTGCTATTATGT 59.604 41.667 0.00 0.00 0.00 2.29
2540 7466 9.119329 GTCTGCTATTATGTCAATAAGTACGAG 57.881 37.037 0.00 0.00 31.81 4.18
2573 7499 4.283978 TGTACCTGGTTCCGAGTTCATTAA 59.716 41.667 3.84 0.00 0.00 1.40
2574 7500 3.671716 ACCTGGTTCCGAGTTCATTAAC 58.328 45.455 0.00 0.00 35.72 2.01
2609 7535 1.990563 GCAACTCAAATGTGCAGATGC 59.009 47.619 0.00 0.00 42.50 3.91
2613 7539 2.747989 ACTCAAATGTGCAGATGCTCAG 59.252 45.455 14.11 4.21 45.88 3.35
2619 7545 3.200593 GCAGATGCTCAGGCCACG 61.201 66.667 5.01 0.00 38.21 4.94
2621 7547 1.812922 CAGATGCTCAGGCCACGTC 60.813 63.158 5.01 2.09 37.74 4.34
2646 7572 3.258372 AGAACACTAGATTCTGCGGAACA 59.742 43.478 10.90 0.00 35.06 3.18
2687 7613 6.773976 ACCTCTGTTCATTTCACTGAAAAA 57.226 33.333 8.28 0.00 36.92 1.94
2731 7657 5.709631 TGTATTGCAAGTTATCCAGCAGAAA 59.290 36.000 4.94 0.00 38.35 2.52
2737 7663 5.449177 GCAAGTTATCCAGCAGAAATACACC 60.449 44.000 0.00 0.00 0.00 4.16
2739 7665 4.161565 AGTTATCCAGCAGAAATACACCGA 59.838 41.667 0.00 0.00 0.00 4.69
2760 7686 7.706607 CACCGAATCATCTAAGATTAACTGTGA 59.293 37.037 0.00 0.00 38.30 3.58
2763 7689 9.254133 CGAATCATCTAAGATTAACTGTGATGT 57.746 33.333 0.00 0.00 38.30 3.06
2802 7728 9.723447 GCTATTTATTTCTCTTCCTAAAACAGC 57.277 33.333 0.00 0.00 0.00 4.40
2831 7757 3.191162 TGCAGTCAATTGGTCATGTAAGC 59.809 43.478 5.42 0.00 0.00 3.09
2856 7782 4.261825 GGGTCTTAGAACCTCTGATCATCG 60.262 50.000 9.43 0.00 36.31 3.84
2874 7800 2.874849 TCGTTTTATTCGTCCGGGTAC 58.125 47.619 0.00 0.00 0.00 3.34
2918 7845 5.022122 TCTTATGATGATCTGGCCTCCTAG 58.978 45.833 3.32 0.00 0.00 3.02
3057 8021 9.349713 GAGGTATGGAAATGTATGACCAATAAA 57.650 33.333 0.00 0.00 36.00 1.40
3058 8022 9.881773 AGGTATGGAAATGTATGACCAATAAAT 57.118 29.630 0.00 0.00 36.00 1.40
3129 8116 5.801380 TGCCTTTTTACCGTCTTCTATTCT 58.199 37.500 0.00 0.00 0.00 2.40
3132 8119 7.879160 TGCCTTTTTACCGTCTTCTATTCTTTA 59.121 33.333 0.00 0.00 0.00 1.85
3133 8120 8.388853 GCCTTTTTACCGTCTTCTATTCTTTAG 58.611 37.037 0.00 0.00 0.00 1.85
3134 8121 9.433153 CCTTTTTACCGTCTTCTATTCTTTAGT 57.567 33.333 0.00 0.00 0.00 2.24
3139 8126 7.332213 ACCGTCTTCTATTCTTTAGTACTCC 57.668 40.000 0.00 0.00 0.00 3.85
3140 8127 7.118060 ACCGTCTTCTATTCTTTAGTACTCCT 58.882 38.462 0.00 0.00 0.00 3.69
3141 8128 7.614974 ACCGTCTTCTATTCTTTAGTACTCCTT 59.385 37.037 0.00 0.00 0.00 3.36
3142 8129 8.130469 CCGTCTTCTATTCTTTAGTACTCCTTC 58.870 40.741 0.00 0.00 0.00 3.46
3143 8130 8.130469 CGTCTTCTATTCTTTAGTACTCCTTCC 58.870 40.741 0.00 0.00 0.00 3.46
3144 8131 8.130469 GTCTTCTATTCTTTAGTACTCCTTCCG 58.870 40.741 0.00 0.00 0.00 4.30
3145 8132 7.833183 TCTTCTATTCTTTAGTACTCCTTCCGT 59.167 37.037 0.00 0.00 0.00 4.69
3146 8133 7.565323 TCTATTCTTTAGTACTCCTTCCGTC 57.435 40.000 0.00 0.00 0.00 4.79
3147 8134 7.344913 TCTATTCTTTAGTACTCCTTCCGTCT 58.655 38.462 0.00 0.00 0.00 4.18
3148 8135 5.893897 TTCTTTAGTACTCCTTCCGTCTC 57.106 43.478 0.00 0.00 0.00 3.36
3149 8136 4.914983 TCTTTAGTACTCCTTCCGTCTCA 58.085 43.478 0.00 0.00 0.00 3.27
3150 8137 5.319453 TCTTTAGTACTCCTTCCGTCTCAA 58.681 41.667 0.00 0.00 0.00 3.02
3151 8138 5.771666 TCTTTAGTACTCCTTCCGTCTCAAA 59.228 40.000 0.00 0.00 0.00 2.69
3152 8139 6.266103 TCTTTAGTACTCCTTCCGTCTCAAAA 59.734 38.462 0.00 0.00 0.00 2.44
3153 8140 6.600882 TTAGTACTCCTTCCGTCTCAAAAT 57.399 37.500 0.00 0.00 0.00 1.82
3154 8141 7.707624 TTAGTACTCCTTCCGTCTCAAAATA 57.292 36.000 0.00 0.00 0.00 1.40
3155 8142 6.600882 AGTACTCCTTCCGTCTCAAAATAA 57.399 37.500 0.00 0.00 0.00 1.40
3156 8143 6.631962 AGTACTCCTTCCGTCTCAAAATAAG 58.368 40.000 0.00 0.00 0.00 1.73
3157 8144 5.485209 ACTCCTTCCGTCTCAAAATAAGT 57.515 39.130 0.00 0.00 0.00 2.24
3158 8145 5.238583 ACTCCTTCCGTCTCAAAATAAGTG 58.761 41.667 0.00 0.00 0.00 3.16
3159 8146 5.011738 ACTCCTTCCGTCTCAAAATAAGTGA 59.988 40.000 0.00 0.00 0.00 3.41
3160 8147 5.235516 TCCTTCCGTCTCAAAATAAGTGAC 58.764 41.667 0.00 0.00 0.00 3.67
3161 8148 5.011738 TCCTTCCGTCTCAAAATAAGTGACT 59.988 40.000 0.00 0.00 0.00 3.41
3162 8149 5.701290 CCTTCCGTCTCAAAATAAGTGACTT 59.299 40.000 2.37 2.37 0.00 3.01
3163 8150 6.872020 CCTTCCGTCTCAAAATAAGTGACTTA 59.128 38.462 7.60 7.60 0.00 2.24
3164 8151 7.386848 CCTTCCGTCTCAAAATAAGTGACTTAA 59.613 37.037 9.35 0.00 29.35 1.85
3165 8152 7.647907 TCCGTCTCAAAATAAGTGACTTAAC 57.352 36.000 9.35 0.45 29.35 2.01
3166 8153 7.439381 TCCGTCTCAAAATAAGTGACTTAACT 58.561 34.615 9.35 0.00 29.35 2.24
3167 8154 7.929785 TCCGTCTCAAAATAAGTGACTTAACTT 59.070 33.333 9.35 3.45 42.89 2.66
3168 8155 8.557029 CCGTCTCAAAATAAGTGACTTAACTTT 58.443 33.333 9.35 9.10 40.77 2.66
3169 8156 9.370126 CGTCTCAAAATAAGTGACTTAACTTTG 57.630 33.333 23.58 23.58 40.77 2.77
3181 8168 9.662947 AGTGACTTAACTTTGTACTAACTTTGT 57.337 29.630 0.00 0.00 0.00 2.83
3185 8172 9.889128 ACTTAACTTTGTACTAACTTTGTACCA 57.111 29.630 9.98 0.00 39.42 3.25
3189 8176 8.429493 ACTTTGTACTAACTTTGTACCAAGTC 57.571 34.615 18.76 1.46 45.40 3.01
3190 8177 8.042515 ACTTTGTACTAACTTTGTACCAAGTCA 58.957 33.333 18.76 3.88 45.40 3.41
3191 8178 7.775397 TTGTACTAACTTTGTACCAAGTCAC 57.225 36.000 12.36 8.99 39.42 3.67
3192 8179 7.116075 TGTACTAACTTTGTACCAAGTCACT 57.884 36.000 12.36 0.95 39.42 3.41
3193 8180 7.558604 TGTACTAACTTTGTACCAAGTCACTT 58.441 34.615 12.36 0.62 39.42 3.16
3194 8181 8.694540 TGTACTAACTTTGTACCAAGTCACTTA 58.305 33.333 12.36 1.70 39.42 2.24
3195 8182 9.189723 GTACTAACTTTGTACCAAGTCACTTAG 57.810 37.037 12.36 12.02 35.52 2.18
3196 8183 7.789026 ACTAACTTTGTACCAAGTCACTTAGT 58.211 34.615 12.36 12.56 0.00 2.24
3197 8184 8.262933 ACTAACTTTGTACCAAGTCACTTAGTT 58.737 33.333 12.36 0.00 0.00 2.24
3198 8185 7.933215 AACTTTGTACCAAGTCACTTAGTTT 57.067 32.000 12.36 0.00 0.00 2.66
3199 8186 7.316544 ACTTTGTACCAAGTCACTTAGTTTG 57.683 36.000 6.52 0.00 0.00 2.93
3200 8187 6.317893 ACTTTGTACCAAGTCACTTAGTTTGG 59.682 38.462 11.51 11.51 44.38 3.28
3201 8188 4.710324 TGTACCAAGTCACTTAGTTTGGG 58.290 43.478 15.97 0.00 43.38 4.12
3202 8189 4.409574 TGTACCAAGTCACTTAGTTTGGGA 59.590 41.667 15.97 7.10 43.38 4.37
3203 8190 3.816994 ACCAAGTCACTTAGTTTGGGAC 58.183 45.455 15.97 5.99 43.38 4.46
3204 8191 2.806244 CCAAGTCACTTAGTTTGGGACG 59.194 50.000 6.45 0.00 37.11 4.79
3205 8192 2.806244 CAAGTCACTTAGTTTGGGACGG 59.194 50.000 0.00 0.00 33.84 4.79
3206 8193 2.322658 AGTCACTTAGTTTGGGACGGA 58.677 47.619 0.00 0.00 33.84 4.69
3207 8194 2.299297 AGTCACTTAGTTTGGGACGGAG 59.701 50.000 0.00 0.00 33.84 4.63
3208 8195 1.621814 TCACTTAGTTTGGGACGGAGG 59.378 52.381 0.00 0.00 0.00 4.30
3209 8196 0.981943 ACTTAGTTTGGGACGGAGGG 59.018 55.000 0.00 0.00 0.00 4.30
3253 9005 4.577834 TCAACATGTGTCGTTCTGTCTA 57.422 40.909 0.00 0.00 0.00 2.59
3505 9300 8.897752 GCATATAGTTGTTTCTCTTCCTGAAAT 58.102 33.333 0.00 0.00 36.10 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.836981 AGATCTACTTCAGCCAGCAAGT 59.163 45.455 0.00 1.61 36.75 3.16
9 10 3.540314 AGATCTACTTCAGCCAGCAAG 57.460 47.619 0.00 0.00 0.00 4.01
10 11 3.769300 TGTAGATCTACTTCAGCCAGCAA 59.231 43.478 28.53 5.85 37.00 3.91
11 12 3.365472 TGTAGATCTACTTCAGCCAGCA 58.635 45.455 28.53 6.39 37.00 4.41
12 13 4.038522 TCATGTAGATCTACTTCAGCCAGC 59.961 45.833 28.53 3.95 37.00 4.85
13 14 5.781210 TCATGTAGATCTACTTCAGCCAG 57.219 43.478 28.53 12.78 37.00 4.85
14 15 5.893824 TCTTCATGTAGATCTACTTCAGCCA 59.106 40.000 28.53 11.13 37.00 4.75
15 16 6.398234 TCTTCATGTAGATCTACTTCAGCC 57.602 41.667 28.53 5.97 37.00 4.85
16 17 7.437862 CCTTTCTTCATGTAGATCTACTTCAGC 59.562 40.741 28.53 6.64 37.00 4.26
17 18 8.474025 ACCTTTCTTCATGTAGATCTACTTCAG 58.526 37.037 28.53 20.08 37.00 3.02
21 22 9.702253 TCTTACCTTTCTTCATGTAGATCTACT 57.298 33.333 28.53 14.61 37.00 2.57
24 25 7.484975 CGTCTTACCTTTCTTCATGTAGATCT 58.515 38.462 2.58 0.00 0.00 2.75
25 26 6.199342 GCGTCTTACCTTTCTTCATGTAGATC 59.801 42.308 2.58 0.00 0.00 2.75
26 27 6.043411 GCGTCTTACCTTTCTTCATGTAGAT 58.957 40.000 2.58 0.00 0.00 1.98
28 29 4.567159 GGCGTCTTACCTTTCTTCATGTAG 59.433 45.833 0.00 0.00 0.00 2.74
29 30 4.020928 TGGCGTCTTACCTTTCTTCATGTA 60.021 41.667 0.00 0.00 0.00 2.29
30 31 3.244422 TGGCGTCTTACCTTTCTTCATGT 60.244 43.478 0.00 0.00 0.00 3.21
31 32 3.334691 TGGCGTCTTACCTTTCTTCATG 58.665 45.455 0.00 0.00 0.00 3.07
32 33 3.695830 TGGCGTCTTACCTTTCTTCAT 57.304 42.857 0.00 0.00 0.00 2.57
33 34 3.260884 AGATGGCGTCTTACCTTTCTTCA 59.739 43.478 2.64 0.00 31.47 3.02
34 35 3.619038 CAGATGGCGTCTTACCTTTCTTC 59.381 47.826 6.47 0.00 34.00 2.87
36 37 2.567615 ACAGATGGCGTCTTACCTTTCT 59.432 45.455 6.47 0.00 34.00 2.52
37 38 2.973945 ACAGATGGCGTCTTACCTTTC 58.026 47.619 6.47 0.00 34.00 2.62
38 39 3.074412 CAACAGATGGCGTCTTACCTTT 58.926 45.455 6.47 0.00 34.00 3.11
39 40 2.615493 CCAACAGATGGCGTCTTACCTT 60.615 50.000 6.47 0.00 43.80 3.50
40 41 1.066143 CCAACAGATGGCGTCTTACCT 60.066 52.381 6.47 0.00 43.80 3.08
51 52 1.108776 CTTCCCATGCCCAACAGATG 58.891 55.000 0.00 0.00 0.00 2.90
52 53 0.685458 GCTTCCCATGCCCAACAGAT 60.685 55.000 0.00 0.00 0.00 2.90
53 54 1.304381 GCTTCCCATGCCCAACAGA 60.304 57.895 0.00 0.00 0.00 3.41
54 55 2.353610 GGCTTCCCATGCCCAACAG 61.354 63.158 0.00 0.00 44.32 3.16
55 56 2.283821 GGCTTCCCATGCCCAACA 60.284 61.111 0.00 0.00 44.32 3.33
62 63 1.595093 GGAACCGTTGGCTTCCCATG 61.595 60.000 0.00 0.00 41.78 3.66
63 64 1.304134 GGAACCGTTGGCTTCCCAT 60.304 57.895 0.00 0.00 41.78 4.00
67 68 2.014857 GGAATAGGAACCGTTGGCTTC 58.985 52.381 0.00 0.00 0.00 3.86
68 69 1.353022 TGGAATAGGAACCGTTGGCTT 59.647 47.619 0.00 0.00 0.00 4.35
69 70 0.988832 TGGAATAGGAACCGTTGGCT 59.011 50.000 0.00 0.00 0.00 4.75
70 71 2.052782 ATGGAATAGGAACCGTTGGC 57.947 50.000 0.00 0.00 0.00 4.52
72 73 2.542595 GCGTATGGAATAGGAACCGTTG 59.457 50.000 0.00 0.00 36.84 4.10
73 74 2.433239 AGCGTATGGAATAGGAACCGTT 59.567 45.455 0.00 0.00 36.84 4.44
75 76 2.296471 AGAGCGTATGGAATAGGAACCG 59.704 50.000 0.00 0.00 36.84 4.44
76 77 3.654414 CAGAGCGTATGGAATAGGAACC 58.346 50.000 0.00 0.00 36.84 3.62
77 78 3.060602 GCAGAGCGTATGGAATAGGAAC 58.939 50.000 0.00 0.00 36.84 3.62
79 80 2.316108 TGCAGAGCGTATGGAATAGGA 58.684 47.619 0.00 0.00 36.84 2.94
80 81 2.820059 TGCAGAGCGTATGGAATAGG 57.180 50.000 0.00 0.00 37.71 2.57
82 83 3.833442 CGTATGCAGAGCGTATGGAATA 58.167 45.455 0.00 0.00 34.49 1.75
86 87 2.145225 GCGTATGCAGAGCGTATGG 58.855 57.895 0.89 1.66 42.15 2.74
223 226 1.374252 GCCTCTTCGAGCCAAACGA 60.374 57.895 0.00 0.00 37.99 3.85
270 273 2.092646 TGCTGGTTGTAGAAGTGGTTGT 60.093 45.455 0.00 0.00 0.00 3.32
272 275 3.214328 CTTGCTGGTTGTAGAAGTGGTT 58.786 45.455 0.00 0.00 0.00 3.67
273 276 2.487265 CCTTGCTGGTTGTAGAAGTGGT 60.487 50.000 0.00 0.00 0.00 4.16
274 277 2.154462 CCTTGCTGGTTGTAGAAGTGG 58.846 52.381 0.00 0.00 0.00 4.00
340 343 2.568509 CTCCCAAATCCAAAGCCACAAT 59.431 45.455 0.00 0.00 0.00 2.71
488 491 1.429825 CGTTGCGGTGTTTCCACAA 59.570 52.632 0.00 0.00 43.71 3.33
512 515 2.865343 GGTGTCTCACCGTCGAATAT 57.135 50.000 3.12 0.00 44.95 1.28
548 551 2.278026 TCACGATCAATGTCACGGAG 57.722 50.000 0.00 0.00 0.00 4.63
551 554 2.345641 GTCCTTCACGATCAATGTCACG 59.654 50.000 0.00 0.00 0.00 4.35
588 591 7.758820 TCTATGTCACCCTTAAATTTCCCTA 57.241 36.000 0.00 0.00 0.00 3.53
624 627 0.547712 AGCCCGCCTATGGATACCAT 60.548 55.000 8.35 8.35 46.99 3.55
661 664 1.089481 CCACACACACACAGCTCGTT 61.089 55.000 0.00 0.00 0.00 3.85
663 666 1.217585 CTCCACACACACACAGCTCG 61.218 60.000 0.00 0.00 0.00 5.03
664 667 0.882042 CCTCCACACACACACAGCTC 60.882 60.000 0.00 0.00 0.00 4.09
667 670 0.815213 CCACCTCCACACACACACAG 60.815 60.000 0.00 0.00 0.00 3.66
668 671 1.223211 CCACCTCCACACACACACA 59.777 57.895 0.00 0.00 0.00 3.72
669 672 0.532862 CTCCACCTCCACACACACAC 60.533 60.000 0.00 0.00 0.00 3.82
670 673 1.695114 CCTCCACCTCCACACACACA 61.695 60.000 0.00 0.00 0.00 3.72
671 674 1.071471 CCTCCACCTCCACACACAC 59.929 63.158 0.00 0.00 0.00 3.82
674 677 3.249189 GGCCTCCACCTCCACACA 61.249 66.667 0.00 0.00 0.00 3.72
675 678 2.930562 AGGCCTCCACCTCCACAC 60.931 66.667 0.00 0.00 33.62 3.82
676 679 2.930019 CAGGCCTCCACCTCCACA 60.930 66.667 0.00 0.00 38.26 4.17
679 682 2.930562 ACACAGGCCTCCACCTCC 60.931 66.667 0.00 0.00 38.26 4.30
680 683 2.177594 CTCACACAGGCCTCCACCTC 62.178 65.000 0.00 0.00 38.26 3.85
681 684 2.122413 TCACACAGGCCTCCACCT 60.122 61.111 0.00 0.00 42.30 4.00
682 685 2.348998 CTCACACAGGCCTCCACC 59.651 66.667 0.00 0.00 0.00 4.61
683 686 2.359230 GCTCACACAGGCCTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
684 687 3.640407 GGCTCACACAGGCCTCCA 61.640 66.667 0.00 0.00 44.48 3.86
690 693 3.370978 CGTAATTACAAGGCTCACACAGG 59.629 47.826 15.67 0.00 0.00 4.00
693 696 3.332034 ACCGTAATTACAAGGCTCACAC 58.668 45.455 15.67 0.00 0.00 3.82
694 697 3.688694 ACCGTAATTACAAGGCTCACA 57.311 42.857 15.67 0.00 0.00 3.58
695 698 3.749609 ACAACCGTAATTACAAGGCTCAC 59.250 43.478 15.67 0.00 0.00 3.51
696 699 4.010667 ACAACCGTAATTACAAGGCTCA 57.989 40.909 15.67 0.00 0.00 4.26
697 700 6.148315 AGTTTACAACCGTAATTACAAGGCTC 59.852 38.462 15.67 0.00 37.44 4.70
698 701 5.999600 AGTTTACAACCGTAATTACAAGGCT 59.000 36.000 15.67 0.00 37.44 4.58
699 702 6.245115 AGTTTACAACCGTAATTACAAGGC 57.755 37.500 15.67 0.00 37.44 4.35
700 703 8.130469 ACAAAGTTTACAACCGTAATTACAAGG 58.870 33.333 15.67 11.42 37.44 3.61
701 704 8.949953 CACAAAGTTTACAACCGTAATTACAAG 58.050 33.333 15.67 8.50 37.44 3.16
702 705 7.914346 CCACAAAGTTTACAACCGTAATTACAA 59.086 33.333 15.67 0.00 37.44 2.41
705 708 7.041235 CCTCCACAAAGTTTACAACCGTAATTA 60.041 37.037 0.00 0.00 37.44 1.40
706 709 6.238814 CCTCCACAAAGTTTACAACCGTAATT 60.239 38.462 0.00 0.00 37.44 1.40
707 710 5.239963 CCTCCACAAAGTTTACAACCGTAAT 59.760 40.000 0.00 0.00 37.44 1.89
708 711 4.575645 CCTCCACAAAGTTTACAACCGTAA 59.424 41.667 0.00 0.00 35.78 3.18
710 713 2.946990 CCTCCACAAAGTTTACAACCGT 59.053 45.455 0.00 0.00 0.00 4.83
712 715 3.293337 ACCCTCCACAAAGTTTACAACC 58.707 45.455 0.00 0.00 0.00 3.77
713 716 4.204799 AGACCCTCCACAAAGTTTACAAC 58.795 43.478 0.00 0.00 0.00 3.32
714 717 4.165372 AGAGACCCTCCACAAAGTTTACAA 59.835 41.667 0.00 0.00 0.00 2.41
715 718 3.714798 AGAGACCCTCCACAAAGTTTACA 59.285 43.478 0.00 0.00 0.00 2.41
716 719 4.353383 AGAGACCCTCCACAAAGTTTAC 57.647 45.455 0.00 0.00 0.00 2.01
718 721 3.953542 AAGAGACCCTCCACAAAGTTT 57.046 42.857 0.00 0.00 0.00 2.66
719 722 3.555966 CAAAGAGACCCTCCACAAAGTT 58.444 45.455 0.00 0.00 0.00 2.66
722 725 1.478654 GGCAAAGAGACCCTCCACAAA 60.479 52.381 0.00 0.00 0.00 2.83
723 726 0.110486 GGCAAAGAGACCCTCCACAA 59.890 55.000 0.00 0.00 0.00 3.33
724 727 1.761174 GGCAAAGAGACCCTCCACA 59.239 57.895 0.00 0.00 0.00 4.17
725 728 1.002011 GGGCAAAGAGACCCTCCAC 60.002 63.158 0.00 0.00 40.85 4.02
726 729 3.495729 GGGCAAAGAGACCCTCCA 58.504 61.111 0.00 0.00 40.85 3.86
794 797 9.284968 GGCATATACCATGTTGATAGTTAAACT 57.715 33.333 0.00 0.00 0.00 2.66
795 798 8.512138 GGGCATATACCATGTTGATAGTTAAAC 58.488 37.037 0.00 0.00 0.00 2.01
796 799 8.221251 TGGGCATATACCATGTTGATAGTTAAA 58.779 33.333 0.00 0.00 31.83 1.52
797 800 7.750655 TGGGCATATACCATGTTGATAGTTAA 58.249 34.615 0.00 0.00 31.83 2.01
798 801 7.323052 TGGGCATATACCATGTTGATAGTTA 57.677 36.000 0.00 0.00 31.83 2.24
799 802 6.199557 TGGGCATATACCATGTTGATAGTT 57.800 37.500 0.00 0.00 31.83 2.24
800 803 5.841267 TGGGCATATACCATGTTGATAGT 57.159 39.130 0.00 0.00 31.83 2.12
801 804 6.240894 AGTTGGGCATATACCATGTTGATAG 58.759 40.000 0.00 0.00 37.93 2.08
802 805 6.183361 TGAGTTGGGCATATACCATGTTGATA 60.183 38.462 0.00 0.00 37.93 2.15
804 807 4.080072 TGAGTTGGGCATATACCATGTTGA 60.080 41.667 0.00 0.00 37.93 3.18
805 808 4.206375 TGAGTTGGGCATATACCATGTTG 58.794 43.478 0.00 0.00 37.93 3.33
806 809 4.518278 TGAGTTGGGCATATACCATGTT 57.482 40.909 0.00 0.00 37.93 2.71
808 811 7.523293 TTTTATGAGTTGGGCATATACCATG 57.477 36.000 0.00 0.00 37.93 3.66
837 840 0.541296 GGGCCAAGGCATGCTATCAT 60.541 55.000 18.92 0.00 44.11 2.45
838 841 1.152694 GGGCCAAGGCATGCTATCA 60.153 57.895 18.92 0.00 44.11 2.15
839 842 0.756442 TTGGGCCAAGGCATGCTATC 60.756 55.000 16.66 0.18 44.11 2.08
840 843 0.325484 TTTGGGCCAAGGCATGCTAT 60.325 50.000 19.90 3.63 44.11 2.97
841 844 0.971959 CTTTGGGCCAAGGCATGCTA 60.972 55.000 19.90 0.54 44.11 3.49
842 845 2.203818 TTTGGGCCAAGGCATGCT 60.204 55.556 19.90 0.11 44.11 3.79
843 846 1.257055 TACTTTGGGCCAAGGCATGC 61.257 55.000 26.48 9.90 44.11 4.06
844 847 1.205417 CTTACTTTGGGCCAAGGCATG 59.795 52.381 26.48 13.39 44.11 4.06
845 848 1.560505 CTTACTTTGGGCCAAGGCAT 58.439 50.000 26.48 12.04 44.11 4.40
846 849 1.184970 GCTTACTTTGGGCCAAGGCA 61.185 55.000 26.48 12.91 44.11 4.75
847 850 0.900182 AGCTTACTTTGGGCCAAGGC 60.900 55.000 26.48 20.60 41.06 4.35
848 851 0.890683 CAGCTTACTTTGGGCCAAGG 59.109 55.000 25.16 25.16 0.00 3.61
849 852 1.909700 TCAGCTTACTTTGGGCCAAG 58.090 50.000 19.90 15.49 0.00 3.61
850 853 2.373335 TTCAGCTTACTTTGGGCCAA 57.627 45.000 16.66 16.66 0.00 4.52
852 855 3.588955 CAAATTCAGCTTACTTTGGGCC 58.411 45.455 0.00 0.00 0.00 5.80
853 856 3.588955 CCAAATTCAGCTTACTTTGGGC 58.411 45.455 17.73 0.00 42.44 5.36
856 859 6.612306 GGAGTACCAAATTCAGCTTACTTTG 58.388 40.000 4.24 4.24 35.97 2.77
857 860 5.411669 CGGAGTACCAAATTCAGCTTACTTT 59.588 40.000 0.00 0.00 35.59 2.66
858 861 4.935808 CGGAGTACCAAATTCAGCTTACTT 59.064 41.667 0.00 0.00 35.59 2.24
859 862 4.504858 CGGAGTACCAAATTCAGCTTACT 58.495 43.478 0.00 0.00 35.59 2.24
860 863 3.621715 CCGGAGTACCAAATTCAGCTTAC 59.378 47.826 0.00 0.00 35.59 2.34
861 864 3.262405 ACCGGAGTACCAAATTCAGCTTA 59.738 43.478 9.46 0.00 35.59 3.09
862 865 2.039879 ACCGGAGTACCAAATTCAGCTT 59.960 45.455 9.46 0.00 35.59 3.74
863 866 1.628846 ACCGGAGTACCAAATTCAGCT 59.371 47.619 9.46 0.00 35.59 4.24
864 867 2.007608 GACCGGAGTACCAAATTCAGC 58.992 52.381 9.46 0.00 35.59 4.26
865 868 3.611766 AGACCGGAGTACCAAATTCAG 57.388 47.619 9.46 0.00 35.59 3.02
866 869 4.360951 AAAGACCGGAGTACCAAATTCA 57.639 40.909 9.46 0.00 35.59 2.57
868 871 5.494390 AGTAAAGACCGGAGTACCAAATT 57.506 39.130 9.46 0.00 35.59 1.82
869 872 5.247792 AGAAGTAAAGACCGGAGTACCAAAT 59.752 40.000 9.46 0.00 35.59 2.32
870 873 4.590222 AGAAGTAAAGACCGGAGTACCAAA 59.410 41.667 9.46 0.00 35.59 3.28
871 874 4.154942 AGAAGTAAAGACCGGAGTACCAA 58.845 43.478 9.46 0.00 35.59 3.67
873 876 3.130164 GGAGAAGTAAAGACCGGAGTACC 59.870 52.174 9.46 0.00 0.00 3.34
874 877 3.760684 TGGAGAAGTAAAGACCGGAGTAC 59.239 47.826 9.46 4.42 0.00 2.73
875 878 4.038271 TGGAGAAGTAAAGACCGGAGTA 57.962 45.455 9.46 0.00 0.00 2.59
877 880 4.473477 AATGGAGAAGTAAAGACCGGAG 57.527 45.455 9.46 0.00 0.00 4.63
878 881 6.363167 TTTAATGGAGAAGTAAAGACCGGA 57.637 37.500 9.46 0.00 0.00 5.14
879 882 6.821665 TGATTTAATGGAGAAGTAAAGACCGG 59.178 38.462 0.00 0.00 32.27 5.28
880 883 7.843490 TGATTTAATGGAGAAGTAAAGACCG 57.157 36.000 0.00 0.00 32.27 4.79
884 887 9.305925 GGCAAATGATTTAATGGAGAAGTAAAG 57.694 33.333 0.00 0.00 32.27 1.85
885 888 9.034800 AGGCAAATGATTTAATGGAGAAGTAAA 57.965 29.630 0.00 0.00 33.21 2.01
886 889 8.593945 AGGCAAATGATTTAATGGAGAAGTAA 57.406 30.769 0.00 0.00 0.00 2.24
887 890 8.593945 AAGGCAAATGATTTAATGGAGAAGTA 57.406 30.769 0.00 0.00 0.00 2.24
889 892 6.982724 GGAAGGCAAATGATTTAATGGAGAAG 59.017 38.462 0.00 0.00 0.00 2.85
890 893 6.127083 GGGAAGGCAAATGATTTAATGGAGAA 60.127 38.462 0.00 0.00 0.00 2.87
891 894 5.363580 GGGAAGGCAAATGATTTAATGGAGA 59.636 40.000 0.00 0.00 0.00 3.71
892 895 5.364735 AGGGAAGGCAAATGATTTAATGGAG 59.635 40.000 0.00 0.00 0.00 3.86
893 896 5.279685 AGGGAAGGCAAATGATTTAATGGA 58.720 37.500 0.00 0.00 0.00 3.41
895 898 8.010733 TCTTAGGGAAGGCAAATGATTTAATG 57.989 34.615 0.00 0.00 33.09 1.90
896 899 7.288621 CCTCTTAGGGAAGGCAAATGATTTAAT 59.711 37.037 0.00 0.00 33.09 1.40
897 900 6.607198 CCTCTTAGGGAAGGCAAATGATTTAA 59.393 38.462 0.00 0.00 33.09 1.52
899 902 4.958581 CCTCTTAGGGAAGGCAAATGATTT 59.041 41.667 0.00 0.00 33.09 2.17
900 903 4.540715 CCTCTTAGGGAAGGCAAATGATT 58.459 43.478 0.00 0.00 33.09 2.57
901 904 3.689569 GCCTCTTAGGGAAGGCAAATGAT 60.690 47.826 8.47 0.00 45.99 2.45
902 905 2.357154 GCCTCTTAGGGAAGGCAAATGA 60.357 50.000 8.47 0.00 45.99 2.57
903 906 2.027385 GCCTCTTAGGGAAGGCAAATG 58.973 52.381 8.47 0.00 45.99 2.32
909 912 1.041437 CGGTAGCCTCTTAGGGAAGG 58.959 60.000 0.00 0.00 35.37 3.46
910 913 1.041437 CCGGTAGCCTCTTAGGGAAG 58.959 60.000 0.00 0.00 35.37 3.46
913 916 1.075450 ACCCGGTAGCCTCTTAGGG 60.075 63.158 0.00 0.00 44.17 3.53
914 917 1.400530 CCACCCGGTAGCCTCTTAGG 61.401 65.000 0.00 0.00 38.80 2.69
915 918 1.400530 CCCACCCGGTAGCCTCTTAG 61.401 65.000 0.00 0.00 0.00 2.18
916 919 1.382146 CCCACCCGGTAGCCTCTTA 60.382 63.158 0.00 0.00 0.00 2.10
917 920 2.687566 CCCACCCGGTAGCCTCTT 60.688 66.667 0.00 0.00 0.00 2.85
935 938 1.675641 AATGACAGTGGCTTCGGGC 60.676 57.895 0.00 0.00 41.26 6.13
936 939 0.321564 TCAATGACAGTGGCTTCGGG 60.322 55.000 2.62 0.00 0.00 5.14
937 940 1.081892 CTCAATGACAGTGGCTTCGG 58.918 55.000 2.62 0.00 0.00 4.30
938 941 2.084610 TCTCAATGACAGTGGCTTCG 57.915 50.000 2.62 0.00 0.00 3.79
939 942 5.819379 TGATTATCTCAATGACAGTGGCTTC 59.181 40.000 2.62 0.00 0.00 3.86
940 943 5.748402 TGATTATCTCAATGACAGTGGCTT 58.252 37.500 2.62 0.00 0.00 4.35
942 945 5.363101 TCTGATTATCTCAATGACAGTGGC 58.637 41.667 2.62 0.00 32.14 5.01
943 946 6.482641 CCTTCTGATTATCTCAATGACAGTGG 59.517 42.308 2.62 0.00 32.14 4.00
944 947 6.018098 GCCTTCTGATTATCTCAATGACAGTG 60.018 42.308 0.00 0.00 32.14 3.66
945 948 6.054295 GCCTTCTGATTATCTCAATGACAGT 58.946 40.000 0.00 0.00 32.14 3.55
946 949 6.053650 TGCCTTCTGATTATCTCAATGACAG 58.946 40.000 0.00 0.00 32.14 3.51
947 950 5.993055 TGCCTTCTGATTATCTCAATGACA 58.007 37.500 0.00 0.00 32.14 3.58
948 951 6.932356 TTGCCTTCTGATTATCTCAATGAC 57.068 37.500 0.00 0.00 32.14 3.06
950 953 7.937649 TGATTTGCCTTCTGATTATCTCAATG 58.062 34.615 0.00 0.00 32.14 2.82
951 954 8.707796 ATGATTTGCCTTCTGATTATCTCAAT 57.292 30.769 0.00 0.00 32.14 2.57
952 955 7.230108 GGATGATTTGCCTTCTGATTATCTCAA 59.770 37.037 0.00 0.00 32.14 3.02
953 956 6.713903 GGATGATTTGCCTTCTGATTATCTCA 59.286 38.462 0.00 0.00 0.00 3.27
954 957 6.713903 TGGATGATTTGCCTTCTGATTATCTC 59.286 38.462 0.00 0.00 0.00 2.75
956 959 6.889301 TGGATGATTTGCCTTCTGATTATC 57.111 37.500 0.00 0.00 0.00 1.75
957 960 6.041296 GGTTGGATGATTTGCCTTCTGATTAT 59.959 38.462 0.00 0.00 0.00 1.28
959 962 4.161001 GGTTGGATGATTTGCCTTCTGATT 59.839 41.667 0.00 0.00 0.00 2.57
960 963 3.703052 GGTTGGATGATTTGCCTTCTGAT 59.297 43.478 0.00 0.00 0.00 2.90
961 964 3.091545 GGTTGGATGATTTGCCTTCTGA 58.908 45.455 0.00 0.00 0.00 3.27
962 965 2.167075 GGGTTGGATGATTTGCCTTCTG 59.833 50.000 0.00 0.00 0.00 3.02
963 966 2.460669 GGGTTGGATGATTTGCCTTCT 58.539 47.619 0.00 0.00 0.00 2.85
964 967 1.482182 GGGGTTGGATGATTTGCCTTC 59.518 52.381 0.00 0.00 0.00 3.46
965 968 1.079323 AGGGGTTGGATGATTTGCCTT 59.921 47.619 0.00 0.00 0.00 4.35
966 969 0.712380 AGGGGTTGGATGATTTGCCT 59.288 50.000 0.00 0.00 0.00 4.75
967 970 1.571955 AAGGGGTTGGATGATTTGCC 58.428 50.000 0.00 0.00 0.00 4.52
968 971 3.631250 TCTAAGGGGTTGGATGATTTGC 58.369 45.455 0.00 0.00 0.00 3.68
969 972 5.116084 TCTCTAAGGGGTTGGATGATTTG 57.884 43.478 0.00 0.00 0.00 2.32
970 973 5.796502 TTCTCTAAGGGGTTGGATGATTT 57.203 39.130 0.00 0.00 0.00 2.17
973 976 5.252863 TGAATTTCTCTAAGGGGTTGGATGA 59.747 40.000 0.00 0.00 0.00 2.92
974 977 5.358160 GTGAATTTCTCTAAGGGGTTGGATG 59.642 44.000 0.00 0.00 0.00 3.51
977 980 4.017126 GGTGAATTTCTCTAAGGGGTTGG 58.983 47.826 0.00 0.00 0.00 3.77
978 981 4.017126 GGGTGAATTTCTCTAAGGGGTTG 58.983 47.826 0.00 0.00 0.00 3.77
979 982 3.011369 GGGGTGAATTTCTCTAAGGGGTT 59.989 47.826 0.00 0.00 0.00 4.11
980 983 2.581246 GGGGTGAATTTCTCTAAGGGGT 59.419 50.000 0.00 0.00 0.00 4.95
982 985 5.710409 TTAGGGGTGAATTTCTCTAAGGG 57.290 43.478 0.00 0.00 0.00 3.95
1298 4110 0.912486 GAACTCATACCAGGGGCACT 59.088 55.000 0.00 0.00 0.00 4.40
1301 4113 0.462047 CACGAACTCATACCAGGGGC 60.462 60.000 0.00 0.00 0.00 5.80
1302 4114 0.462047 GCACGAACTCATACCAGGGG 60.462 60.000 0.00 0.00 0.00 4.79
1303 4115 0.249120 TGCACGAACTCATACCAGGG 59.751 55.000 0.00 0.00 0.00 4.45
1304 4116 1.645034 CTGCACGAACTCATACCAGG 58.355 55.000 0.00 0.00 0.00 4.45
1306 4118 0.608130 AGCTGCACGAACTCATACCA 59.392 50.000 1.02 0.00 0.00 3.25
1364 4179 4.785453 CGTTGCAGGAGGAGGCCC 62.785 72.222 0.00 0.00 0.00 5.80
1400 4215 0.396974 TTGGATACCCTGGCATTGGC 60.397 55.000 2.73 2.73 40.13 4.52
1401 4216 1.341877 TGTTGGATACCCTGGCATTGG 60.342 52.381 1.91 1.91 0.00 3.16
1402 4217 1.750778 GTGTTGGATACCCTGGCATTG 59.249 52.381 0.00 0.00 0.00 2.82
1447 4262 0.032952 CTTCCGTCGTTGGAGAACCA 59.967 55.000 0.00 0.00 45.34 3.67
1448 4263 0.669625 CCTTCCGTCGTTGGAGAACC 60.670 60.000 0.00 0.00 39.72 3.62
1454 4269 1.291877 CTTGAGCCTTCCGTCGTTGG 61.292 60.000 0.00 0.00 0.00 3.77
1555 4397 2.915137 CCCTAGAGCGGGCTCCTC 60.915 72.222 16.59 0.00 43.70 3.71
1557 4399 4.862823 ACCCCTAGAGCGGGCTCC 62.863 72.222 16.59 0.00 45.37 4.70
1653 4545 1.007038 GTACACTTCCGCACGGACA 60.007 57.895 12.11 2.72 45.11 4.02
1856 4794 3.052036 GCATGTAATTGCGCCCTATTTG 58.948 45.455 4.18 0.00 32.06 2.32
1997 4938 1.573829 GCCTCGCGGACACAAAATGA 61.574 55.000 6.13 0.00 0.00 2.57
2121 5074 6.957631 ACATAAAGGACAACACCATATCTCA 58.042 36.000 0.00 0.00 0.00 3.27
2212 5775 0.811281 GTATGTGGCTCAAACCCAGC 59.189 55.000 0.00 0.00 36.02 4.85
2308 7234 1.032014 TCAAAGACCAAAGCACAGCC 58.968 50.000 0.00 0.00 0.00 4.85
2320 7246 5.593010 ACCTAGCGATGATAGTTCAAAGAC 58.407 41.667 0.00 0.00 34.96 3.01
2327 7253 5.961396 ATTCGTACCTAGCGATGATAGTT 57.039 39.130 0.00 0.00 38.21 2.24
2328 7254 5.706369 AGAATTCGTACCTAGCGATGATAGT 59.294 40.000 0.00 0.00 38.21 2.12
2336 7262 7.304919 TCTATCATAGAATTCGTACCTAGCG 57.695 40.000 0.00 0.00 0.00 4.26
2410 7336 1.004277 TGTAGTCAAGCCCATCCCAAC 59.996 52.381 0.00 0.00 0.00 3.77
2416 7342 4.785346 AATGAGATGTAGTCAAGCCCAT 57.215 40.909 0.00 0.00 0.00 4.00
2437 7363 7.170828 CACGATAAAATGGCATACACTAGCTAA 59.829 37.037 0.00 0.00 0.00 3.09
2448 7374 9.651913 AAAGAATAAAACACGATAAAATGGCAT 57.348 25.926 0.00 0.00 0.00 4.40
2510 7436 8.668510 ACTTATTGACATAATAGCAGACAAGG 57.331 34.615 0.00 0.00 0.00 3.61
2524 7450 8.179509 AGCCTATTACTCGTACTTATTGACAT 57.820 34.615 0.00 0.00 0.00 3.06
2527 7453 8.004087 ACAAGCCTATTACTCGTACTTATTGA 57.996 34.615 0.00 0.00 0.00 2.57
2537 7463 3.383825 ACCAGGTACAAGCCTATTACTCG 59.616 47.826 0.00 0.00 37.04 4.18
2540 7466 4.449131 GGAACCAGGTACAAGCCTATTAC 58.551 47.826 0.00 0.00 37.04 1.89
2573 7499 6.494893 TGAGTTGCTTCGCTTAATATTTGT 57.505 33.333 0.00 0.00 0.00 2.83
2574 7500 7.795431 TTTGAGTTGCTTCGCTTAATATTTG 57.205 32.000 0.00 0.00 0.00 2.32
2593 7519 2.097629 CCTGAGCATCTGCACATTTGAG 59.902 50.000 4.79 0.00 45.16 3.02
2609 7535 0.456312 GTTCTACGACGTGGCCTGAG 60.456 60.000 11.56 0.00 0.00 3.35
2613 7539 0.523072 TAGTGTTCTACGACGTGGCC 59.477 55.000 11.56 0.00 0.00 5.36
2619 7545 4.029704 CGCAGAATCTAGTGTTCTACGAC 58.970 47.826 19.42 8.47 42.28 4.34
2621 7547 3.064958 TCCGCAGAATCTAGTGTTCTACG 59.935 47.826 18.19 18.19 40.43 3.51
2687 7613 5.779529 ACACTTCTGCAAACATCAGAATT 57.220 34.783 5.98 0.00 45.96 2.17
2700 7626 5.123820 TGGATAACTTGCAATACACTTCTGC 59.876 40.000 0.00 0.00 36.60 4.26
2731 7657 9.698309 CAGTTAATCTTAGATGATTCGGTGTAT 57.302 33.333 0.00 0.00 37.73 2.29
2737 7663 9.254133 ACATCACAGTTAATCTTAGATGATTCG 57.746 33.333 0.00 0.00 37.83 3.34
2739 7665 9.896645 ACACATCACAGTTAATCTTAGATGATT 57.103 29.630 0.00 0.00 37.83 2.57
2802 7728 5.823209 TGACCAATTGACTGCAATATCTG 57.177 39.130 7.12 0.00 43.71 2.90
2831 7757 4.026744 TGATCAGAGGTTCTAAGACCCAG 58.973 47.826 0.00 0.00 40.73 4.45
2874 7800 6.567687 AGAGAGAGATATGTATGTGGTTCG 57.432 41.667 0.00 0.00 0.00 3.95
2918 7845 1.966451 CCGTTCAGTGCAGGGGAAC 60.966 63.158 12.65 12.65 38.00 3.62
3060 8024 9.944376 GTACTCAAGCCCATCTGAATAATATAA 57.056 33.333 0.00 0.00 0.00 0.98
3061 8025 9.100197 TGTACTCAAGCCCATCTGAATAATATA 57.900 33.333 0.00 0.00 0.00 0.86
3129 8116 6.409524 TTTTGAGACGGAAGGAGTACTAAA 57.590 37.500 0.00 0.00 0.00 1.85
3132 8119 6.210984 ACTTATTTTGAGACGGAAGGAGTACT 59.789 38.462 0.00 0.00 0.00 2.73
3133 8120 6.310711 CACTTATTTTGAGACGGAAGGAGTAC 59.689 42.308 0.00 0.00 0.00 2.73
3134 8121 6.209986 TCACTTATTTTGAGACGGAAGGAGTA 59.790 38.462 0.00 0.00 0.00 2.59
3135 8122 5.011738 TCACTTATTTTGAGACGGAAGGAGT 59.988 40.000 0.00 0.00 0.00 3.85
3136 8123 5.348997 GTCACTTATTTTGAGACGGAAGGAG 59.651 44.000 0.00 0.00 0.00 3.69
3137 8124 5.011738 AGTCACTTATTTTGAGACGGAAGGA 59.988 40.000 0.00 0.00 34.56 3.36
3138 8125 5.238583 AGTCACTTATTTTGAGACGGAAGG 58.761 41.667 0.00 0.00 34.56 3.46
3139 8126 6.787085 AAGTCACTTATTTTGAGACGGAAG 57.213 37.500 0.00 0.00 34.56 3.46
3140 8127 7.929785 AGTTAAGTCACTTATTTTGAGACGGAA 59.070 33.333 0.00 0.00 34.56 4.30
3141 8128 7.439381 AGTTAAGTCACTTATTTTGAGACGGA 58.561 34.615 0.00 0.00 34.56 4.69
3142 8129 7.653767 AGTTAAGTCACTTATTTTGAGACGG 57.346 36.000 0.00 0.00 34.56 4.79
3143 8130 9.370126 CAAAGTTAAGTCACTTATTTTGAGACG 57.630 33.333 20.32 3.69 35.87 4.18
3155 8142 9.662947 ACAAAGTTAGTACAAAGTTAAGTCACT 57.337 29.630 0.00 0.00 0.00 3.41
3159 8146 9.889128 TGGTACAAAGTTAGTACAAAGTTAAGT 57.111 29.630 0.00 0.00 42.73 2.24
3179 8166 4.409574 TCCCAAACTAAGTGACTTGGTACA 59.590 41.667 14.76 0.00 34.19 2.90
3180 8167 4.753610 GTCCCAAACTAAGTGACTTGGTAC 59.246 45.833 14.76 5.45 34.19 3.34
3181 8168 4.501915 CGTCCCAAACTAAGTGACTTGGTA 60.502 45.833 14.76 0.00 34.19 3.25
3182 8169 3.743269 CGTCCCAAACTAAGTGACTTGGT 60.743 47.826 8.62 8.62 36.76 3.67
3183 8170 2.806244 CGTCCCAAACTAAGTGACTTGG 59.194 50.000 8.33 7.72 38.45 3.61
3184 8171 2.806244 CCGTCCCAAACTAAGTGACTTG 59.194 50.000 8.33 0.77 0.00 3.16
3185 8172 2.701951 TCCGTCCCAAACTAAGTGACTT 59.298 45.455 2.37 2.37 0.00 3.01
3186 8173 2.299297 CTCCGTCCCAAACTAAGTGACT 59.701 50.000 0.00 0.00 0.00 3.41
3187 8174 2.612221 CCTCCGTCCCAAACTAAGTGAC 60.612 54.545 0.00 0.00 0.00 3.67
3188 8175 1.621814 CCTCCGTCCCAAACTAAGTGA 59.378 52.381 0.00 0.00 0.00 3.41
3189 8176 1.338769 CCCTCCGTCCCAAACTAAGTG 60.339 57.143 0.00 0.00 0.00 3.16
3190 8177 0.981943 CCCTCCGTCCCAAACTAAGT 59.018 55.000 0.00 0.00 0.00 2.24
3191 8178 1.207329 CTCCCTCCGTCCCAAACTAAG 59.793 57.143 0.00 0.00 0.00 2.18
3192 8179 1.272807 CTCCCTCCGTCCCAAACTAA 58.727 55.000 0.00 0.00 0.00 2.24
3193 8180 0.115745 ACTCCCTCCGTCCCAAACTA 59.884 55.000 0.00 0.00 0.00 2.24
3194 8181 0.115745 TACTCCCTCCGTCCCAAACT 59.884 55.000 0.00 0.00 0.00 2.66
3195 8182 1.201424 ATACTCCCTCCGTCCCAAAC 58.799 55.000 0.00 0.00 0.00 2.93
3196 8183 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3197 8184 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
3198 8185 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
3199 8186 1.138464 GACAAATACTCCCTCCGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
3200 8187 1.829222 TGACAAATACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
3201 8188 2.496470 AGTGACAAATACTCCCTCCGTC 59.504 50.000 0.00 0.00 0.00 4.79
3202 8189 2.537143 AGTGACAAATACTCCCTCCGT 58.463 47.619 0.00 0.00 0.00 4.69
3203 8190 3.700038 AGTAGTGACAAATACTCCCTCCG 59.300 47.826 0.00 0.00 0.00 4.63
3204 8191 4.957327 AGAGTAGTGACAAATACTCCCTCC 59.043 45.833 18.73 2.76 45.95 4.30
3205 8192 5.680151 GCAGAGTAGTGACAAATACTCCCTC 60.680 48.000 18.73 9.48 45.95 4.30
3206 8193 4.160626 GCAGAGTAGTGACAAATACTCCCT 59.839 45.833 18.73 5.68 45.95 4.20
3207 8194 4.081642 TGCAGAGTAGTGACAAATACTCCC 60.082 45.833 18.73 13.43 45.95 4.30
3208 8195 5.073311 TGCAGAGTAGTGACAAATACTCC 57.927 43.478 18.73 9.98 45.95 3.85
3209 8196 6.813649 TGATTGCAGAGTAGTGACAAATACTC 59.186 38.462 16.24 16.24 45.42 2.59
3253 9005 8.157476 CCTACTCATACTTATTGGCCAAATAGT 58.843 37.037 28.36 28.36 32.30 2.12
3402 9197 5.701290 GGAGAACTTGCAATACACTTGTACT 59.299 40.000 0.00 0.00 32.72 2.73
3406 9201 4.614535 GCTGGAGAACTTGCAATACACTTG 60.615 45.833 0.00 0.00 0.00 3.16
3441 9236 5.577164 CACCGTGGTTAATCTTAGAAGACAG 59.423 44.000 0.00 0.00 37.98 3.51
3442 9237 5.475719 CACCGTGGTTAATCTTAGAAGACA 58.524 41.667 0.00 0.00 37.98 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.