Multiple sequence alignment - TraesCS3D01G455700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G455700 chr3D 100.000 3841 0 0 1 3841 561764713 561760873 0.000000e+00 7094
1 TraesCS3D01G455700 chr3D 91.112 1654 91 17 679 2291 561893003 561891365 0.000000e+00 2189
2 TraesCS3D01G455700 chr3D 90.663 1071 76 15 1229 2283 561749714 561748652 0.000000e+00 1402
3 TraesCS3D01G455700 chr3D 94.961 635 27 4 2788 3419 561890310 561889678 0.000000e+00 990
4 TraesCS3D01G455700 chr3D 91.785 633 32 4 2788 3418 561748175 561747561 0.000000e+00 863
5 TraesCS3D01G455700 chr3D 91.917 433 35 0 2290 2722 561890742 561890310 1.180000e-169 606
6 TraesCS3D01G455700 chr3D 90.345 435 39 1 2291 2722 561748609 561748175 5.570000e-158 568
7 TraesCS3D01G455700 chr3D 90.251 359 27 4 880 1233 561750116 561749761 2.700000e-126 462
8 TraesCS3D01G455700 chr3D 91.049 324 20 4 328 643 561898834 561898512 2.740000e-116 429
9 TraesCS3D01G455700 chr3D 87.042 355 33 5 3448 3801 561747558 561747216 4.650000e-104 388
10 TraesCS3D01G455700 chr3D 88.822 331 15 1 1 309 47776451 47776121 1.670000e-103 387
11 TraesCS3D01G455700 chr3D 93.989 183 8 2 3621 3801 561889535 561889354 1.360000e-69 274
12 TraesCS3D01G455700 chr3D 90.909 143 9 2 3448 3589 561889676 561889537 5.070000e-44 189
13 TraesCS3D01G455700 chr3D 90.000 120 11 1 337 456 561751911 561751793 1.850000e-33 154
14 TraesCS3D01G455700 chr3D 87.179 117 8 5 442 555 561750672 561750560 4.030000e-25 126
15 TraesCS3D01G455700 chr3B 89.267 2115 151 23 670 2748 749093092 749091018 0.000000e+00 2579
16 TraesCS3D01G455700 chr3B 90.210 1522 104 14 2291 3801 749147416 749145929 0.000000e+00 1943
17 TraesCS3D01G455700 chr3B 91.286 964 58 14 1332 2283 749148408 749147459 0.000000e+00 1291
18 TraesCS3D01G455700 chr3B 92.088 910 68 4 2291 3199 749312054 749311148 0.000000e+00 1279
19 TraesCS3D01G455700 chr3B 93.928 774 35 9 1333 2103 749313596 749312832 0.000000e+00 1158
20 TraesCS3D01G455700 chr3B 90.464 776 39 14 451 1193 749149381 749148608 0.000000e+00 990
21 TraesCS3D01G455700 chr3B 87.674 576 33 6 2746 3316 749090893 749090351 1.510000e-178 636
22 TraesCS3D01G455700 chr3B 86.432 597 43 13 659 1230 749314243 749313660 1.520000e-173 619
23 TraesCS3D01G455700 chr3B 89.362 470 34 8 3306 3773 749078556 749078101 9.250000e-161 577
24 TraesCS3D01G455700 chr3B 90.741 324 20 5 328 643 749314550 749314229 1.280000e-114 424
25 TraesCS3D01G455700 chr3B 85.714 392 31 13 658 1029 749099092 749098706 1.290000e-104 390
26 TraesCS3D01G455700 chr3B 87.042 355 28 6 3448 3801 749309738 749309401 6.020000e-103 385
27 TraesCS3D01G455700 chr3B 93.617 235 14 1 3186 3419 749309974 749309740 2.200000e-92 350
28 TraesCS3D01G455700 chr3B 90.476 168 7 8 485 643 749099244 749099077 3.010000e-51 213
29 TraesCS3D01G455700 chr3B 86.982 169 17 1 2843 3006 749098061 749097893 6.550000e-43 185
30 TraesCS3D01G455700 chr3B 90.083 121 11 1 328 447 749149756 749149636 5.140000e-34 156
31 TraesCS3D01G455700 chr3B 95.652 69 3 0 1229 1297 749148479 749148411 1.130000e-20 111
32 TraesCS3D01G455700 chr3A 87.338 1698 119 49 658 2291 697474557 697472892 0.000000e+00 1857
33 TraesCS3D01G455700 chr3A 91.757 1104 72 12 1192 2283 697493013 697491917 0.000000e+00 1517
34 TraesCS3D01G455700 chr3A 91.201 1091 80 6 2291 3377 697491874 697490796 0.000000e+00 1469
35 TraesCS3D01G455700 chr3A 90.520 654 28 10 2788 3419 697471774 697471133 0.000000e+00 833
36 TraesCS3D01G455700 chr3A 92.774 429 20 4 3376 3801 697480928 697480508 9.120000e-171 610
37 TraesCS3D01G455700 chr3A 90.455 440 35 3 2290 2722 697472213 697471774 1.200000e-159 573
38 TraesCS3D01G455700 chr3A 91.935 248 10 3 406 643 697493712 697493465 4.750000e-89 339
39 TraesCS3D01G455700 chr3A 90.514 253 13 4 898 1142 697493276 697493027 1.330000e-84 324
40 TraesCS3D01G455700 chr3A 93.810 210 12 1 3593 3801 697471091 697470882 8.010000e-82 315
41 TraesCS3D01G455700 chr3A 88.732 213 11 10 658 858 697493480 697493269 8.240000e-62 248
42 TraesCS3D01G455700 chr3A 93.750 112 6 1 312 422 697494482 697494371 2.370000e-37 167
43 TraesCS3D01G455700 chr3A 86.325 117 9 5 442 555 697474789 697474677 1.870000e-23 121
44 TraesCS3D01G455700 chr5D 90.029 341 11 2 1 319 505989276 505989615 1.650000e-113 420
45 TraesCS3D01G455700 chr2A 89.666 329 13 6 2 309 300328481 300328809 2.150000e-107 399
46 TraesCS3D01G455700 chr2A 87.842 329 16 6 1 307 628340470 628340144 7.840000e-97 364
47 TraesCS3D01G455700 chr2A 87.164 335 17 3 1 309 708918986 708919320 1.310000e-94 357
48 TraesCS3D01G455700 chrUn 89.124 331 14 2 1 309 11579263 11579593 3.600000e-105 392
49 TraesCS3D01G455700 chr6A 88.822 331 15 2 1 309 562249239 562249569 1.670000e-103 387
50 TraesCS3D01G455700 chr5A 88.427 337 18 1 1 316 54259962 54259626 1.670000e-103 387
51 TraesCS3D01G455700 chr5A 89.164 323 12 3 10 309 374578005 374578327 7.790000e-102 381
52 TraesCS3D01G455700 chr1D 88.822 331 15 1 1 309 300057870 300058200 1.670000e-103 387
53 TraesCS3D01G455700 chr6B 88.323 334 14 3 1 309 30970400 30970733 1.010000e-100 377
54 TraesCS3D01G455700 chr7D 87.915 331 18 1 1 309 127483050 127483380 1.690000e-98 370
55 TraesCS3D01G455700 chr7D 86.167 347 22 7 1 324 102583235 102583578 6.110000e-93 351
56 TraesCS3D01G455700 chr4B 78.161 174 26 8 376 546 557974000 557973836 2.440000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G455700 chr3D 561760873 561764713 3840 True 7094.000000 7094 100.000000 1 3841 1 chr3D.!!$R2 3840
1 TraesCS3D01G455700 chr3D 561889354 561893003 3649 True 849.600000 2189 92.577600 679 3801 5 chr3D.!!$R5 3122
2 TraesCS3D01G455700 chr3D 561747216 561751911 4695 True 566.142857 1402 89.609286 337 3801 7 chr3D.!!$R4 3464
3 TraesCS3D01G455700 chr3B 749090351 749093092 2741 True 1607.500000 2579 88.470500 670 3316 2 chr3B.!!$R2 2646
4 TraesCS3D01G455700 chr3B 749145929 749149756 3827 True 898.200000 1943 91.539000 328 3801 5 chr3B.!!$R4 3473
5 TraesCS3D01G455700 chr3B 749309401 749314550 5149 True 702.500000 1279 90.641333 328 3801 6 chr3B.!!$R5 3473
6 TraesCS3D01G455700 chr3B 749097893 749099244 1351 True 262.666667 390 87.724000 485 3006 3 chr3B.!!$R3 2521
7 TraesCS3D01G455700 chr3A 697470882 697474789 3907 True 739.800000 1857 89.689600 442 3801 5 chr3A.!!$R2 3359
8 TraesCS3D01G455700 chr3A 697490796 697494482 3686 True 677.333333 1517 91.314833 312 3377 6 chr3A.!!$R3 3065

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 3202 0.296349 GCACGGTTCGTTTTTGTTGC 59.704 50.0 0.00 0.0 38.32 4.17 F
1534 3906 0.732571 CGTTTGCTCGTGCCCATAAT 59.267 50.0 7.05 0.0 38.71 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2495 5794 0.734942 CGCAAAATGCTTCCAGCCTG 60.735 55.000 0.43 0.0 42.25 4.85 R
3105 6809 1.404181 CCTGACATGACCCACAGTACG 60.404 57.143 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.717942 AGCTTAGCTTTTCTATAGTATTGATGG 57.282 33.333 0.00 0.00 33.89 3.51
33 34 9.495572 GCTTAGCTTTTCTATAGTATTGATGGT 57.504 33.333 0.00 0.00 0.00 3.55
37 38 9.905713 AGCTTTTCTATAGTATTGATGGTTGAA 57.094 29.630 0.00 0.00 0.00 2.69
46 47 7.502120 AGTATTGATGGTTGAATAGTCATGC 57.498 36.000 0.00 0.00 32.48 4.06
47 48 7.056006 AGTATTGATGGTTGAATAGTCATGCA 58.944 34.615 0.00 0.00 32.48 3.96
48 49 6.778834 ATTGATGGTTGAATAGTCATGCAA 57.221 33.333 0.00 0.00 32.48 4.08
49 50 6.587206 TTGATGGTTGAATAGTCATGCAAA 57.413 33.333 0.00 0.00 31.14 3.68
50 51 6.198650 TGATGGTTGAATAGTCATGCAAAG 57.801 37.500 0.00 0.00 31.14 2.77
51 52 5.711506 TGATGGTTGAATAGTCATGCAAAGT 59.288 36.000 0.00 0.00 31.14 2.66
52 53 6.883756 TGATGGTTGAATAGTCATGCAAAGTA 59.116 34.615 0.00 0.00 31.14 2.24
53 54 6.741992 TGGTTGAATAGTCATGCAAAGTAG 57.258 37.500 0.00 0.00 31.14 2.57
54 55 5.123820 TGGTTGAATAGTCATGCAAAGTAGC 59.876 40.000 0.00 0.00 31.14 3.58
55 56 5.449177 GGTTGAATAGTCATGCAAAGTAGCC 60.449 44.000 0.00 0.00 31.14 3.93
56 57 5.102953 TGAATAGTCATGCAAAGTAGCCT 57.897 39.130 0.00 0.00 0.00 4.58
57 58 5.500234 TGAATAGTCATGCAAAGTAGCCTT 58.500 37.500 0.00 0.00 0.00 4.35
58 59 5.945784 TGAATAGTCATGCAAAGTAGCCTTT 59.054 36.000 0.00 0.00 41.62 3.11
59 60 6.434028 TGAATAGTCATGCAAAGTAGCCTTTT 59.566 34.615 0.00 0.00 38.87 2.27
60 61 4.510038 AGTCATGCAAAGTAGCCTTTTG 57.490 40.909 0.00 1.91 38.87 2.44
68 69 5.834239 CAAAGTAGCCTTTTGCAAAGATG 57.166 39.130 12.41 6.18 44.83 2.90
69 70 4.525912 AAGTAGCCTTTTGCAAAGATGG 57.474 40.909 12.41 15.82 44.83 3.51
70 71 3.500343 AGTAGCCTTTTGCAAAGATGGT 58.500 40.909 21.02 16.76 44.83 3.55
71 72 2.825861 AGCCTTTTGCAAAGATGGTG 57.174 45.000 21.02 7.95 44.83 4.17
72 73 2.318908 AGCCTTTTGCAAAGATGGTGA 58.681 42.857 21.02 4.19 44.83 4.02
73 74 2.699846 AGCCTTTTGCAAAGATGGTGAA 59.300 40.909 21.02 3.58 44.83 3.18
74 75 3.134442 AGCCTTTTGCAAAGATGGTGAAA 59.866 39.130 21.02 2.99 44.83 2.69
75 76 3.495753 GCCTTTTGCAAAGATGGTGAAAG 59.504 43.478 21.02 10.70 40.77 2.62
76 77 3.495753 CCTTTTGCAAAGATGGTGAAAGC 59.504 43.478 12.41 0.00 0.00 3.51
95 96 9.860898 GTGAAAGCACCTAATTTTTATTCATCT 57.139 29.630 0.00 0.00 39.14 2.90
96 97 9.859427 TGAAAGCACCTAATTTTTATTCATCTG 57.141 29.630 0.00 0.00 0.00 2.90
97 98 9.305925 GAAAGCACCTAATTTTTATTCATCTGG 57.694 33.333 0.00 0.00 0.00 3.86
98 99 7.352079 AGCACCTAATTTTTATTCATCTGGG 57.648 36.000 0.00 0.00 0.00 4.45
99 100 7.125391 AGCACCTAATTTTTATTCATCTGGGA 58.875 34.615 0.00 0.00 0.00 4.37
100 101 7.619302 AGCACCTAATTTTTATTCATCTGGGAA 59.381 33.333 0.00 0.00 0.00 3.97
101 102 8.424133 GCACCTAATTTTTATTCATCTGGGAAT 58.576 33.333 0.00 0.00 40.45 3.01
112 113 9.645128 TTATTCATCTGGGAATAATTGATGTGT 57.355 29.630 4.68 0.00 42.06 3.72
114 115 9.818270 ATTCATCTGGGAATAATTGATGTGTAT 57.182 29.630 0.00 0.00 35.79 2.29
115 116 8.853077 TCATCTGGGAATAATTGATGTGTATC 57.147 34.615 0.00 0.00 36.74 2.24
116 117 8.439172 TCATCTGGGAATAATTGATGTGTATCA 58.561 33.333 0.00 0.00 41.44 2.15
117 118 9.239551 CATCTGGGAATAATTGATGTGTATCAT 57.760 33.333 0.00 0.00 42.60 2.45
147 148 9.412460 TCAAATTATCAGGCTTAAATCATCACT 57.588 29.630 0.00 0.00 0.00 3.41
150 151 4.970662 TCAGGCTTAAATCATCACTTGC 57.029 40.909 0.00 0.00 0.00 4.01
151 152 4.592942 TCAGGCTTAAATCATCACTTGCT 58.407 39.130 0.00 0.00 0.00 3.91
152 153 5.012239 TCAGGCTTAAATCATCACTTGCTT 58.988 37.500 0.00 0.00 0.00 3.91
153 154 6.179756 TCAGGCTTAAATCATCACTTGCTTA 58.820 36.000 0.00 0.00 0.00 3.09
154 155 6.094048 TCAGGCTTAAATCATCACTTGCTTAC 59.906 38.462 0.00 0.00 0.00 2.34
155 156 6.094603 CAGGCTTAAATCATCACTTGCTTACT 59.905 38.462 0.00 0.00 0.00 2.24
156 157 6.094603 AGGCTTAAATCATCACTTGCTTACTG 59.905 38.462 0.00 0.00 0.00 2.74
157 158 6.261118 GCTTAAATCATCACTTGCTTACTGG 58.739 40.000 0.00 0.00 0.00 4.00
158 159 6.678900 GCTTAAATCATCACTTGCTTACTGGG 60.679 42.308 0.00 0.00 0.00 4.45
159 160 4.574674 AATCATCACTTGCTTACTGGGA 57.425 40.909 0.00 0.00 0.00 4.37
160 161 4.785346 ATCATCACTTGCTTACTGGGAT 57.215 40.909 0.00 0.00 0.00 3.85
161 162 5.894298 ATCATCACTTGCTTACTGGGATA 57.106 39.130 0.00 0.00 0.00 2.59
162 163 5.282055 TCATCACTTGCTTACTGGGATAG 57.718 43.478 0.00 0.00 0.00 2.08
163 164 4.101585 TCATCACTTGCTTACTGGGATAGG 59.898 45.833 0.00 0.00 0.00 2.57
164 165 3.719871 TCACTTGCTTACTGGGATAGGA 58.280 45.455 0.00 0.00 0.00 2.94
165 166 3.706594 TCACTTGCTTACTGGGATAGGAG 59.293 47.826 0.00 0.00 0.00 3.69
166 167 3.706594 CACTTGCTTACTGGGATAGGAGA 59.293 47.826 0.00 0.00 0.00 3.71
167 168 3.964031 ACTTGCTTACTGGGATAGGAGAG 59.036 47.826 0.00 0.00 0.00 3.20
168 169 3.689872 TGCTTACTGGGATAGGAGAGT 57.310 47.619 0.00 0.00 0.00 3.24
169 170 3.300388 TGCTTACTGGGATAGGAGAGTG 58.700 50.000 0.00 0.00 0.00 3.51
170 171 3.052869 TGCTTACTGGGATAGGAGAGTGA 60.053 47.826 0.00 0.00 0.00 3.41
171 172 3.572255 GCTTACTGGGATAGGAGAGTGAG 59.428 52.174 0.00 0.00 0.00 3.51
172 173 2.765689 ACTGGGATAGGAGAGTGAGG 57.234 55.000 0.00 0.00 0.00 3.86
173 174 1.933765 ACTGGGATAGGAGAGTGAGGT 59.066 52.381 0.00 0.00 0.00 3.85
174 175 2.315176 CTGGGATAGGAGAGTGAGGTG 58.685 57.143 0.00 0.00 0.00 4.00
175 176 1.930204 TGGGATAGGAGAGTGAGGTGA 59.070 52.381 0.00 0.00 0.00 4.02
176 177 2.520120 TGGGATAGGAGAGTGAGGTGAT 59.480 50.000 0.00 0.00 0.00 3.06
177 178 3.051803 TGGGATAGGAGAGTGAGGTGATT 60.052 47.826 0.00 0.00 0.00 2.57
178 179 3.970640 GGGATAGGAGAGTGAGGTGATTT 59.029 47.826 0.00 0.00 0.00 2.17
179 180 4.410555 GGGATAGGAGAGTGAGGTGATTTT 59.589 45.833 0.00 0.00 0.00 1.82
180 181 5.104318 GGGATAGGAGAGTGAGGTGATTTTT 60.104 44.000 0.00 0.00 0.00 1.94
210 211 7.175995 CGTTGCAACGTACAAACATATTTAG 57.824 36.000 37.16 9.02 46.63 1.85
211 212 6.247582 CGTTGCAACGTACAAACATATTTAGG 59.752 38.462 37.16 8.69 46.63 2.69
212 213 6.804770 TGCAACGTACAAACATATTTAGGT 57.195 33.333 0.00 0.00 0.00 3.08
213 214 6.604012 TGCAACGTACAAACATATTTAGGTG 58.396 36.000 0.00 0.00 0.00 4.00
214 215 6.025280 GCAACGTACAAACATATTTAGGTGG 58.975 40.000 0.00 0.00 0.00 4.61
215 216 5.806366 ACGTACAAACATATTTAGGTGGC 57.194 39.130 0.00 0.00 0.00 5.01
216 217 5.247084 ACGTACAAACATATTTAGGTGGCA 58.753 37.500 0.00 0.00 0.00 4.92
217 218 5.883673 ACGTACAAACATATTTAGGTGGCAT 59.116 36.000 0.00 0.00 0.00 4.40
218 219 6.376018 ACGTACAAACATATTTAGGTGGCATT 59.624 34.615 0.00 0.00 0.00 3.56
219 220 7.094118 ACGTACAAACATATTTAGGTGGCATTT 60.094 33.333 0.00 0.00 0.00 2.32
220 221 7.757624 CGTACAAACATATTTAGGTGGCATTTT 59.242 33.333 0.00 0.00 0.00 1.82
221 222 9.083080 GTACAAACATATTTAGGTGGCATTTTC 57.917 33.333 0.00 0.00 0.00 2.29
222 223 6.811170 ACAAACATATTTAGGTGGCATTTTCG 59.189 34.615 0.00 0.00 0.00 3.46
223 224 5.514274 ACATATTTAGGTGGCATTTTCGG 57.486 39.130 0.00 0.00 0.00 4.30
224 225 5.197451 ACATATTTAGGTGGCATTTTCGGA 58.803 37.500 0.00 0.00 0.00 4.55
225 226 5.833131 ACATATTTAGGTGGCATTTTCGGAT 59.167 36.000 0.00 0.00 0.00 4.18
226 227 4.654091 ATTTAGGTGGCATTTTCGGATG 57.346 40.909 0.00 0.00 0.00 3.51
227 228 2.799126 TAGGTGGCATTTTCGGATGT 57.201 45.000 0.00 0.00 0.00 3.06
228 229 1.923356 AGGTGGCATTTTCGGATGTT 58.077 45.000 0.00 0.00 0.00 2.71
229 230 3.080300 AGGTGGCATTTTCGGATGTTA 57.920 42.857 0.00 0.00 0.00 2.41
230 231 3.631250 AGGTGGCATTTTCGGATGTTAT 58.369 40.909 0.00 0.00 0.00 1.89
231 232 4.023291 AGGTGGCATTTTCGGATGTTATT 58.977 39.130 0.00 0.00 0.00 1.40
232 233 5.197451 AGGTGGCATTTTCGGATGTTATTA 58.803 37.500 0.00 0.00 0.00 0.98
233 234 5.833131 AGGTGGCATTTTCGGATGTTATTAT 59.167 36.000 0.00 0.00 0.00 1.28
234 235 6.323739 AGGTGGCATTTTCGGATGTTATTATT 59.676 34.615 0.00 0.00 0.00 1.40
235 236 6.640907 GGTGGCATTTTCGGATGTTATTATTC 59.359 38.462 0.00 0.00 0.00 1.75
236 237 6.640907 GTGGCATTTTCGGATGTTATTATTCC 59.359 38.462 0.00 0.00 0.00 3.01
237 238 6.322456 TGGCATTTTCGGATGTTATTATTCCA 59.678 34.615 0.00 0.00 0.00 3.53
238 239 7.015098 TGGCATTTTCGGATGTTATTATTCCAT 59.985 33.333 0.00 0.00 0.00 3.41
239 240 7.329226 GGCATTTTCGGATGTTATTATTCCATG 59.671 37.037 0.00 0.00 0.00 3.66
240 241 8.081633 GCATTTTCGGATGTTATTATTCCATGA 58.918 33.333 0.00 0.00 0.00 3.07
243 244 8.916628 TTTCGGATGTTATTATTCCATGATGA 57.083 30.769 0.00 0.00 0.00 2.92
244 245 7.905604 TCGGATGTTATTATTCCATGATGAC 57.094 36.000 0.00 0.00 0.00 3.06
245 246 7.449247 TCGGATGTTATTATTCCATGATGACA 58.551 34.615 0.00 0.00 31.23 3.58
246 247 7.603784 TCGGATGTTATTATTCCATGATGACAG 59.396 37.037 0.00 0.00 30.43 3.51
247 248 7.388776 CGGATGTTATTATTCCATGATGACAGT 59.611 37.037 0.00 0.00 30.43 3.55
248 249 9.725019 GGATGTTATTATTCCATGATGACAGTA 57.275 33.333 0.00 0.00 30.43 2.74
254 255 7.770801 TTATTCCATGATGACAGTAGTTTCG 57.229 36.000 0.00 0.00 0.00 3.46
255 256 5.400066 TTCCATGATGACAGTAGTTTCGA 57.600 39.130 0.00 0.00 0.00 3.71
256 257 5.598416 TCCATGATGACAGTAGTTTCGAT 57.402 39.130 0.00 0.00 0.00 3.59
257 258 5.351458 TCCATGATGACAGTAGTTTCGATG 58.649 41.667 0.00 0.00 0.00 3.84
258 259 4.509230 CCATGATGACAGTAGTTTCGATGG 59.491 45.833 0.00 0.00 0.00 3.51
259 260 5.351458 CATGATGACAGTAGTTTCGATGGA 58.649 41.667 0.00 0.00 0.00 3.41
260 261 4.744570 TGATGACAGTAGTTTCGATGGAC 58.255 43.478 0.00 0.00 0.00 4.02
261 262 4.219725 TGATGACAGTAGTTTCGATGGACA 59.780 41.667 0.00 0.00 0.00 4.02
262 263 4.174411 TGACAGTAGTTTCGATGGACAG 57.826 45.455 0.00 0.00 0.00 3.51
263 264 3.572682 TGACAGTAGTTTCGATGGACAGT 59.427 43.478 0.00 0.00 0.00 3.55
264 265 3.914312 ACAGTAGTTTCGATGGACAGTG 58.086 45.455 0.00 0.00 0.00 3.66
265 266 3.254060 CAGTAGTTTCGATGGACAGTGG 58.746 50.000 0.00 0.00 0.00 4.00
266 267 2.233922 AGTAGTTTCGATGGACAGTGGG 59.766 50.000 0.00 0.00 0.00 4.61
267 268 0.321653 AGTTTCGATGGACAGTGGGC 60.322 55.000 0.00 0.00 0.00 5.36
268 269 0.605319 GTTTCGATGGACAGTGGGCA 60.605 55.000 0.00 0.00 0.00 5.36
269 270 0.605319 TTTCGATGGACAGTGGGCAC 60.605 55.000 0.00 0.00 0.00 5.01
270 271 1.763546 TTCGATGGACAGTGGGCACA 61.764 55.000 0.00 0.00 0.00 4.57
271 272 1.302431 CGATGGACAGTGGGCACAA 60.302 57.895 0.00 0.00 0.00 3.33
272 273 0.677731 CGATGGACAGTGGGCACAAT 60.678 55.000 0.00 0.00 0.00 2.71
273 274 1.406751 CGATGGACAGTGGGCACAATA 60.407 52.381 0.00 0.00 0.00 1.90
274 275 2.722094 GATGGACAGTGGGCACAATAA 58.278 47.619 0.00 0.00 0.00 1.40
275 276 2.897271 TGGACAGTGGGCACAATAAT 57.103 45.000 0.00 0.00 0.00 1.28
276 277 3.168035 TGGACAGTGGGCACAATAATT 57.832 42.857 0.00 0.00 0.00 1.40
277 278 3.088532 TGGACAGTGGGCACAATAATTC 58.911 45.455 0.00 0.00 0.00 2.17
278 279 2.427095 GGACAGTGGGCACAATAATTCC 59.573 50.000 0.00 0.00 0.00 3.01
279 280 3.356290 GACAGTGGGCACAATAATTCCT 58.644 45.455 0.00 0.00 0.00 3.36
280 281 3.356290 ACAGTGGGCACAATAATTCCTC 58.644 45.455 0.00 0.00 0.00 3.71
281 282 3.010584 ACAGTGGGCACAATAATTCCTCT 59.989 43.478 0.00 0.00 0.00 3.69
282 283 4.019174 CAGTGGGCACAATAATTCCTCTT 58.981 43.478 0.00 0.00 0.00 2.85
283 284 4.096984 CAGTGGGCACAATAATTCCTCTTC 59.903 45.833 0.00 0.00 0.00 2.87
284 285 3.381590 GTGGGCACAATAATTCCTCTTCC 59.618 47.826 0.00 0.00 0.00 3.46
285 286 2.618709 GGGCACAATAATTCCTCTTCCG 59.381 50.000 0.00 0.00 0.00 4.30
286 287 3.279434 GGCACAATAATTCCTCTTCCGT 58.721 45.455 0.00 0.00 0.00 4.69
287 288 3.694566 GGCACAATAATTCCTCTTCCGTT 59.305 43.478 0.00 0.00 0.00 4.44
288 289 4.438744 GGCACAATAATTCCTCTTCCGTTG 60.439 45.833 0.00 0.00 0.00 4.10
289 290 4.662145 CACAATAATTCCTCTTCCGTTGC 58.338 43.478 0.00 0.00 0.00 4.17
290 291 4.155826 CACAATAATTCCTCTTCCGTTGCA 59.844 41.667 0.00 0.00 0.00 4.08
291 292 4.764823 ACAATAATTCCTCTTCCGTTGCAA 59.235 37.500 0.00 0.00 0.00 4.08
292 293 4.965119 ATAATTCCTCTTCCGTTGCAAC 57.035 40.909 19.89 19.89 0.00 4.17
302 303 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
303 304 2.669910 TTGCAACGCACGGGCATA 60.670 55.556 11.77 0.00 38.71 3.14
304 305 2.043405 TTGCAACGCACGGGCATAT 61.043 52.632 11.77 0.00 38.71 1.78
305 306 2.024588 GCAACGCACGGGCATATG 59.975 61.111 11.77 6.17 41.24 1.78
306 307 2.760159 GCAACGCACGGGCATATGT 61.760 57.895 11.77 0.00 41.24 2.29
307 308 1.062365 CAACGCACGGGCATATGTG 59.938 57.895 11.77 0.00 41.24 3.21
352 353 0.314935 GTTGTCTGTGTGGCCCATTG 59.685 55.000 0.00 0.00 0.00 2.82
598 2723 1.284785 CCCACATACACACTCCCCAAT 59.715 52.381 0.00 0.00 0.00 3.16
667 2796 2.842208 TTTTGAAACGACAGGCACAG 57.158 45.000 0.00 0.00 0.00 3.66
707 2866 4.292178 CGGAGAGGCGCTGGATCC 62.292 72.222 7.64 4.20 0.00 3.36
770 2942 1.950973 GCGTTCTCCAGTCTCCCTCC 61.951 65.000 0.00 0.00 0.00 4.30
786 2974 1.421646 CCTCCCTCTCTCTCTCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
909 3126 8.109634 TGTTAGCTCCAATTTCCTCTATTTTCT 58.890 33.333 0.00 0.00 0.00 2.52
977 3202 0.296349 GCACGGTTCGTTTTTGTTGC 59.704 50.000 0.00 0.00 38.32 4.17
1012 3237 2.284190 GTTAGGAGATGAGCAAGCCAC 58.716 52.381 0.00 0.00 0.00 5.01
1029 3254 1.156736 CACGGAAGAAACGCAAGGAT 58.843 50.000 0.00 0.00 46.39 3.24
1042 3267 2.947652 CGCAAGGATCTGGATGAACATT 59.052 45.455 0.00 0.00 0.00 2.71
1132 3366 7.050377 TGAGAGAATGGTAAGCTATTTTCAGG 58.950 38.462 0.00 0.00 31.90 3.86
1267 3634 3.925913 GCAACTCTCTGTTCTCTCATGTC 59.074 47.826 0.00 0.00 36.63 3.06
1306 3673 6.933521 TCTGAAATATAGCAGATGAGCTTTCC 59.066 38.462 3.93 0.00 43.70 3.13
1534 3906 0.732571 CGTTTGCTCGTGCCCATAAT 59.267 50.000 7.05 0.00 38.71 1.28
1603 3975 5.656416 TGAACTGAAGGTTTTGATCTTTGGT 59.344 36.000 0.00 0.00 38.41 3.67
1679 4051 3.141272 TGGTAAAGAATGGTGGGGAAACT 59.859 43.478 0.00 0.00 0.00 2.66
1764 4136 1.002857 AGGCCAAGCAAGGATACCTT 58.997 50.000 5.01 0.00 45.88 3.50
1975 4347 1.372087 CTCGCAAATGGCACCCTCTC 61.372 60.000 0.00 0.00 45.17 3.20
2000 4372 6.456181 CGAATCTAAATCAGGTGCAGAAGAAC 60.456 42.308 0.00 0.00 0.00 3.01
2178 4651 3.118847 TGCATCTGACTTGCAAAAACCAA 60.119 39.130 0.00 0.00 46.48 3.67
2179 4652 3.870419 GCATCTGACTTGCAAAAACCAAA 59.130 39.130 0.00 0.00 39.90 3.28
2180 4653 4.512571 GCATCTGACTTGCAAAAACCAAAT 59.487 37.500 0.00 0.00 39.90 2.32
2202 4675 4.647424 TTTGTCTCACCCAAATGTTGTC 57.353 40.909 0.00 0.00 0.00 3.18
2241 4725 6.525121 TTGATTGAAGTTGTAGTTGAGTCG 57.475 37.500 0.00 0.00 0.00 4.18
2243 4727 5.462068 TGATTGAAGTTGTAGTTGAGTCGTG 59.538 40.000 0.00 0.00 0.00 4.35
2244 4728 4.380841 TGAAGTTGTAGTTGAGTCGTGT 57.619 40.909 0.00 0.00 0.00 4.49
2245 4729 5.503662 TGAAGTTGTAGTTGAGTCGTGTA 57.496 39.130 0.00 0.00 0.00 2.90
2246 4730 5.893687 TGAAGTTGTAGTTGAGTCGTGTAA 58.106 37.500 0.00 0.00 0.00 2.41
2247 4731 5.745294 TGAAGTTGTAGTTGAGTCGTGTAAC 59.255 40.000 0.00 0.00 0.00 2.50
2248 4732 4.614946 AGTTGTAGTTGAGTCGTGTAACC 58.385 43.478 0.00 0.00 0.00 2.85
2249 4733 4.098349 AGTTGTAGTTGAGTCGTGTAACCA 59.902 41.667 0.00 0.00 0.00 3.67
2250 4734 4.859304 TGTAGTTGAGTCGTGTAACCAT 57.141 40.909 0.00 0.00 0.00 3.55
2251 4735 5.204409 TGTAGTTGAGTCGTGTAACCATT 57.796 39.130 0.00 0.00 0.00 3.16
2309 5595 3.068307 GCCTGGACGTGTAGATAGTTCAT 59.932 47.826 0.00 0.00 0.00 2.57
2337 5630 6.753279 CACCATGATGTTTGCTTCGAATTATT 59.247 34.615 0.00 0.00 0.00 1.40
2338 5631 6.753279 ACCATGATGTTTGCTTCGAATTATTG 59.247 34.615 0.00 0.00 0.00 1.90
2362 5661 7.621796 TGTTACTAAAGATCCTTTCTCCCTTC 58.378 38.462 0.00 0.00 31.78 3.46
2455 5754 0.843309 TGGCAAGAAGTGGGAAGTGA 59.157 50.000 0.00 0.00 0.00 3.41
2457 5756 1.072331 GGCAAGAAGTGGGAAGTGAGA 59.928 52.381 0.00 0.00 0.00 3.27
2461 5760 4.563580 GCAAGAAGTGGGAAGTGAGATGTA 60.564 45.833 0.00 0.00 0.00 2.29
2480 5779 7.875971 AGATGTAGTGTTAAGAAAAGCAAAGG 58.124 34.615 0.00 0.00 0.00 3.11
2571 5870 5.760253 CCTCTTTGAGCTACTGAGAAACAAA 59.240 40.000 6.96 0.00 0.00 2.83
2593 5892 8.362639 ACAAAAAGAAGTATGCAATGAATGTCT 58.637 29.630 0.00 0.00 0.00 3.41
2744 6049 4.202441 CTGGGTATCAGAAATTCCCTGTG 58.798 47.826 7.43 0.00 46.18 3.66
2858 6543 6.094603 GGAAATGAGCATCTGAAGAAAAGCTA 59.905 38.462 0.00 0.00 33.18 3.32
2934 6635 3.643792 AGAGTGGAGCCCTGACAATATAC 59.356 47.826 0.00 0.00 0.00 1.47
2936 6637 4.816126 AGTGGAGCCCTGACAATATACTA 58.184 43.478 0.00 0.00 0.00 1.82
2955 6656 9.869667 ATATACTAAAGGAAAGAGCTCAGAGTA 57.130 33.333 17.77 10.63 0.00 2.59
2970 6671 7.432869 AGCTCAGAGTACATAATAAAGCTCAG 58.567 38.462 0.00 0.00 32.39 3.35
2991 6692 2.551071 GGTCCAGTTAGTTTCAGCTGCT 60.551 50.000 9.47 2.89 0.00 4.24
3105 6809 3.592059 TGTTAGAGGTTATTGCGTGGAC 58.408 45.455 0.00 0.00 0.00 4.02
3117 6821 1.080974 CGTGGACGTACTGTGGGTC 60.081 63.158 0.00 4.95 34.11 4.46
3419 8339 8.153550 AGACTAATAAGTTGAATATCTGCCCTG 58.846 37.037 0.00 0.00 35.56 4.45
3421 8341 8.275040 ACTAATAAGTTGAATATCTGCCCTGTT 58.725 33.333 0.00 0.00 29.00 3.16
3489 8409 7.898014 ATTCATAAGGGGAAAATACTCCAAC 57.102 36.000 0.00 0.00 37.20 3.77
3513 8434 8.193953 ACATAATTTTCCCTGTCTGTTTCATT 57.806 30.769 0.00 0.00 0.00 2.57
3514 8435 8.650490 ACATAATTTTCCCTGTCTGTTTCATTT 58.350 29.630 0.00 0.00 0.00 2.32
3515 8436 9.492973 CATAATTTTCCCTGTCTGTTTCATTTT 57.507 29.630 0.00 0.00 0.00 1.82
3586 8507 5.052481 AGCCTTTGTCAGCAAGAAAAATTC 58.948 37.500 0.00 0.00 33.08 2.17
3591 8512 7.656948 CCTTTGTCAGCAAGAAAAATTCCATTA 59.343 33.333 0.00 0.00 33.08 1.90
3742 8663 0.961019 TGAAGCCACCAGTCATTTGC 59.039 50.000 0.00 0.00 0.00 3.68
3745 8666 1.180029 AGCCACCAGTCATTTGCATC 58.820 50.000 0.00 0.00 0.00 3.91
3802 8724 7.191593 ACATGGAGCTATATGCAAGATATGA 57.808 36.000 9.04 0.00 45.94 2.15
3803 8725 7.803131 ACATGGAGCTATATGCAAGATATGAT 58.197 34.615 9.04 0.00 45.94 2.45
3804 8726 7.715686 ACATGGAGCTATATGCAAGATATGATG 59.284 37.037 9.04 0.00 45.94 3.07
3805 8727 6.589135 TGGAGCTATATGCAAGATATGATGG 58.411 40.000 0.00 0.00 45.94 3.51
3806 8728 5.996513 GGAGCTATATGCAAGATATGATGGG 59.003 44.000 0.00 0.00 45.94 4.00
3807 8729 6.183361 GGAGCTATATGCAAGATATGATGGGA 60.183 42.308 0.00 0.00 45.94 4.37
3808 8730 6.590068 AGCTATATGCAAGATATGATGGGAC 58.410 40.000 0.00 0.00 45.94 4.46
3809 8731 6.157471 AGCTATATGCAAGATATGATGGGACA 59.843 38.462 0.00 0.00 45.14 4.02
3810 8732 6.259608 GCTATATGCAAGATATGATGGGACAC 59.740 42.308 0.00 0.00 41.70 3.67
3811 8733 8.064218 GCTATATGCAAGATATGATGGGACACA 61.064 40.741 0.00 0.00 41.70 3.72
3821 8743 2.792500 TGGGACACACAAGCTGTTG 58.208 52.632 0.00 0.00 39.82 3.33
3823 8745 1.210722 TGGGACACACAAGCTGTTGTA 59.789 47.619 0.27 0.00 45.57 2.41
3824 8746 2.294074 GGGACACACAAGCTGTTGTAA 58.706 47.619 0.27 0.00 45.57 2.41
3825 8747 2.884639 GGGACACACAAGCTGTTGTAAT 59.115 45.455 0.27 0.00 45.57 1.89
3826 8748 3.304659 GGGACACACAAGCTGTTGTAATG 60.305 47.826 0.27 1.29 45.57 1.90
3827 8749 3.304659 GGACACACAAGCTGTTGTAATGG 60.305 47.826 0.27 0.00 45.57 3.16
3828 8750 3.287222 ACACACAAGCTGTTGTAATGGT 58.713 40.909 0.27 0.00 45.57 3.55
3829 8751 3.699038 ACACACAAGCTGTTGTAATGGTT 59.301 39.130 0.27 0.00 45.57 3.67
3830 8752 4.159506 ACACACAAGCTGTTGTAATGGTTT 59.840 37.500 0.27 0.00 45.57 3.27
3831 8753 5.108517 CACACAAGCTGTTGTAATGGTTTT 58.891 37.500 0.27 0.00 45.57 2.43
3832 8754 5.580297 CACACAAGCTGTTGTAATGGTTTTT 59.420 36.000 0.27 0.00 45.57 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.717942 CCATCAATACTATAGAAAAGCTAAGCT 57.282 33.333 6.78 0.00 42.56 3.74
7 8 9.495572 ACCATCAATACTATAGAAAAGCTAAGC 57.504 33.333 6.78 0.00 31.66 3.09
11 12 9.905713 TTCAACCATCAATACTATAGAAAAGCT 57.094 29.630 6.78 0.00 0.00 3.74
20 21 9.224267 GCATGACTATTCAACCATCAATACTAT 57.776 33.333 0.00 0.00 34.61 2.12
21 22 8.210265 TGCATGACTATTCAACCATCAATACTA 58.790 33.333 0.00 0.00 34.61 1.82
22 23 7.056006 TGCATGACTATTCAACCATCAATACT 58.944 34.615 0.00 0.00 34.61 2.12
23 24 7.263100 TGCATGACTATTCAACCATCAATAC 57.737 36.000 0.00 0.00 34.61 1.89
24 25 7.878547 TTGCATGACTATTCAACCATCAATA 57.121 32.000 0.00 0.00 34.61 1.90
25 26 6.778834 TTGCATGACTATTCAACCATCAAT 57.221 33.333 0.00 0.00 34.61 2.57
26 27 6.209192 ACTTTGCATGACTATTCAACCATCAA 59.791 34.615 0.00 0.00 34.61 2.57
27 28 5.711506 ACTTTGCATGACTATTCAACCATCA 59.288 36.000 0.00 0.00 34.61 3.07
28 29 6.199937 ACTTTGCATGACTATTCAACCATC 57.800 37.500 0.00 0.00 34.61 3.51
29 30 6.183360 GCTACTTTGCATGACTATTCAACCAT 60.183 38.462 0.00 0.00 34.61 3.55
30 31 5.123820 GCTACTTTGCATGACTATTCAACCA 59.876 40.000 0.00 0.00 34.61 3.67
31 32 5.449177 GGCTACTTTGCATGACTATTCAACC 60.449 44.000 0.00 0.00 34.61 3.77
32 33 5.355350 AGGCTACTTTGCATGACTATTCAAC 59.645 40.000 0.00 0.00 34.61 3.18
33 34 5.500234 AGGCTACTTTGCATGACTATTCAA 58.500 37.500 0.00 0.00 34.61 2.69
34 35 5.102953 AGGCTACTTTGCATGACTATTCA 57.897 39.130 0.00 0.00 35.73 2.57
35 36 6.442513 AAAGGCTACTTTGCATGACTATTC 57.557 37.500 0.00 0.00 44.91 1.75
36 37 6.624423 CAAAAGGCTACTTTGCATGACTATT 58.376 36.000 0.00 0.00 45.85 1.73
37 38 5.393461 GCAAAAGGCTACTTTGCATGACTAT 60.393 40.000 24.54 0.00 45.85 2.12
38 39 4.082787 GCAAAAGGCTACTTTGCATGACTA 60.083 41.667 24.54 0.00 45.85 2.59
39 40 3.305608 GCAAAAGGCTACTTTGCATGACT 60.306 43.478 24.54 0.00 45.85 3.41
40 41 2.989166 GCAAAAGGCTACTTTGCATGAC 59.011 45.455 24.54 2.31 45.85 3.06
41 42 2.627221 TGCAAAAGGCTACTTTGCATGA 59.373 40.909 27.02 11.57 45.85 3.07
42 43 3.029320 TGCAAAAGGCTACTTTGCATG 57.971 42.857 27.02 0.66 45.85 4.06
43 44 3.749665 TTGCAAAAGGCTACTTTGCAT 57.250 38.095 29.63 0.00 45.85 3.96
44 45 3.131933 TCTTTGCAAAAGGCTACTTTGCA 59.868 39.130 27.02 27.02 45.85 4.08
45 46 3.716601 TCTTTGCAAAAGGCTACTTTGC 58.283 40.909 23.34 23.34 45.85 3.68
46 47 4.687483 CCATCTTTGCAAAAGGCTACTTTG 59.313 41.667 13.84 7.20 45.85 2.77
48 49 3.897505 ACCATCTTTGCAAAAGGCTACTT 59.102 39.130 13.84 0.00 45.15 2.24
49 50 3.256631 CACCATCTTTGCAAAAGGCTACT 59.743 43.478 13.84 0.00 45.15 2.57
50 51 3.255642 TCACCATCTTTGCAAAAGGCTAC 59.744 43.478 13.84 0.00 45.15 3.58
51 52 3.495331 TCACCATCTTTGCAAAAGGCTA 58.505 40.909 13.84 4.87 45.15 3.93
52 53 2.318908 TCACCATCTTTGCAAAAGGCT 58.681 42.857 13.84 4.32 45.15 4.58
53 54 2.818130 TCACCATCTTTGCAAAAGGC 57.182 45.000 13.84 0.00 45.13 4.35
54 55 3.495753 GCTTTCACCATCTTTGCAAAAGG 59.504 43.478 13.84 16.57 0.00 3.11
55 56 4.025480 GTGCTTTCACCATCTTTGCAAAAG 60.025 41.667 13.84 7.71 37.24 2.27
56 57 3.870419 GTGCTTTCACCATCTTTGCAAAA 59.130 39.130 13.84 5.01 37.24 2.44
57 58 3.456280 GTGCTTTCACCATCTTTGCAAA 58.544 40.909 12.14 12.14 37.24 3.68
58 59 3.096489 GTGCTTTCACCATCTTTGCAA 57.904 42.857 0.00 0.00 37.24 4.08
59 60 2.798976 GTGCTTTCACCATCTTTGCA 57.201 45.000 0.00 0.00 37.24 4.08
69 70 9.860898 AGATGAATAAAAATTAGGTGCTTTCAC 57.139 29.630 0.00 0.00 42.40 3.18
70 71 9.859427 CAGATGAATAAAAATTAGGTGCTTTCA 57.141 29.630 0.00 0.00 0.00 2.69
71 72 9.305925 CCAGATGAATAAAAATTAGGTGCTTTC 57.694 33.333 0.00 0.00 0.00 2.62
72 73 8.260114 CCCAGATGAATAAAAATTAGGTGCTTT 58.740 33.333 0.00 0.00 0.00 3.51
73 74 7.619302 TCCCAGATGAATAAAAATTAGGTGCTT 59.381 33.333 0.00 0.00 0.00 3.91
74 75 7.125391 TCCCAGATGAATAAAAATTAGGTGCT 58.875 34.615 0.00 0.00 0.00 4.40
75 76 7.346751 TCCCAGATGAATAAAAATTAGGTGC 57.653 36.000 0.00 0.00 0.00 5.01
86 87 9.645128 ACACATCAATTATTCCCAGATGAATAA 57.355 29.630 9.12 8.24 45.97 1.40
88 89 9.818270 ATACACATCAATTATTCCCAGATGAAT 57.182 29.630 9.12 0.00 38.62 2.57
89 90 9.288576 GATACACATCAATTATTCCCAGATGAA 57.711 33.333 9.12 0.00 38.62 2.57
90 91 8.439172 TGATACACATCAATTATTCCCAGATGA 58.561 33.333 9.12 0.00 38.25 2.92
91 92 8.625786 TGATACACATCAATTATTCCCAGATG 57.374 34.615 0.00 0.00 38.25 2.90
121 122 9.412460 AGTGATGATTTAAGCCTGATAATTTGA 57.588 29.630 0.00 0.00 0.00 2.69
124 125 8.139989 GCAAGTGATGATTTAAGCCTGATAATT 58.860 33.333 0.00 0.00 0.00 1.40
125 126 7.504911 AGCAAGTGATGATTTAAGCCTGATAAT 59.495 33.333 0.00 0.00 0.00 1.28
126 127 6.830324 AGCAAGTGATGATTTAAGCCTGATAA 59.170 34.615 0.00 0.00 0.00 1.75
127 128 6.359804 AGCAAGTGATGATTTAAGCCTGATA 58.640 36.000 0.00 0.00 0.00 2.15
128 129 5.198965 AGCAAGTGATGATTTAAGCCTGAT 58.801 37.500 0.00 0.00 0.00 2.90
129 130 4.592942 AGCAAGTGATGATTTAAGCCTGA 58.407 39.130 0.00 0.00 0.00 3.86
130 131 4.978083 AGCAAGTGATGATTTAAGCCTG 57.022 40.909 0.00 0.00 0.00 4.85
131 132 6.094603 CAGTAAGCAAGTGATGATTTAAGCCT 59.905 38.462 0.00 0.00 38.83 4.58
132 133 6.261118 CAGTAAGCAAGTGATGATTTAAGCC 58.739 40.000 0.00 0.00 38.83 4.35
133 134 6.261118 CCAGTAAGCAAGTGATGATTTAAGC 58.739 40.000 0.00 0.00 38.83 3.09
134 135 6.599244 TCCCAGTAAGCAAGTGATGATTTAAG 59.401 38.462 0.00 0.00 38.83 1.85
135 136 6.480763 TCCCAGTAAGCAAGTGATGATTTAA 58.519 36.000 0.00 0.00 38.83 1.52
136 137 6.061022 TCCCAGTAAGCAAGTGATGATTTA 57.939 37.500 0.00 0.00 38.83 1.40
137 138 4.922206 TCCCAGTAAGCAAGTGATGATTT 58.078 39.130 0.00 0.00 38.83 2.17
138 139 4.574674 TCCCAGTAAGCAAGTGATGATT 57.425 40.909 0.00 0.00 41.39 2.57
139 140 4.785346 ATCCCAGTAAGCAAGTGATGAT 57.215 40.909 0.00 0.00 0.00 2.45
140 141 4.101585 CCTATCCCAGTAAGCAAGTGATGA 59.898 45.833 0.00 0.00 0.00 2.92
141 142 4.101585 TCCTATCCCAGTAAGCAAGTGATG 59.898 45.833 0.00 0.00 0.00 3.07
142 143 4.298626 TCCTATCCCAGTAAGCAAGTGAT 58.701 43.478 0.00 0.00 0.00 3.06
143 144 3.706594 CTCCTATCCCAGTAAGCAAGTGA 59.293 47.826 0.00 0.00 0.00 3.41
144 145 3.706594 TCTCCTATCCCAGTAAGCAAGTG 59.293 47.826 0.00 0.00 0.00 3.16
145 146 3.964031 CTCTCCTATCCCAGTAAGCAAGT 59.036 47.826 0.00 0.00 0.00 3.16
146 147 3.964031 ACTCTCCTATCCCAGTAAGCAAG 59.036 47.826 0.00 0.00 0.00 4.01
147 148 3.706594 CACTCTCCTATCCCAGTAAGCAA 59.293 47.826 0.00 0.00 0.00 3.91
148 149 3.052869 TCACTCTCCTATCCCAGTAAGCA 60.053 47.826 0.00 0.00 0.00 3.91
149 150 3.567397 TCACTCTCCTATCCCAGTAAGC 58.433 50.000 0.00 0.00 0.00 3.09
150 151 4.148838 CCTCACTCTCCTATCCCAGTAAG 58.851 52.174 0.00 0.00 0.00 2.34
151 152 3.532232 ACCTCACTCTCCTATCCCAGTAA 59.468 47.826 0.00 0.00 0.00 2.24
152 153 3.117474 CACCTCACTCTCCTATCCCAGTA 60.117 52.174 0.00 0.00 0.00 2.74
153 154 1.933765 ACCTCACTCTCCTATCCCAGT 59.066 52.381 0.00 0.00 0.00 4.00
154 155 2.091610 TCACCTCACTCTCCTATCCCAG 60.092 54.545 0.00 0.00 0.00 4.45
155 156 1.930204 TCACCTCACTCTCCTATCCCA 59.070 52.381 0.00 0.00 0.00 4.37
156 157 2.757894 TCACCTCACTCTCCTATCCC 57.242 55.000 0.00 0.00 0.00 3.85
157 158 5.622346 AAAATCACCTCACTCTCCTATCC 57.378 43.478 0.00 0.00 0.00 2.59
187 188 7.060174 CACCTAAATATGTTTGTACGTTGCAAC 59.940 37.037 19.89 19.89 0.00 4.17
188 189 7.078851 CACCTAAATATGTTTGTACGTTGCAA 58.921 34.615 0.00 0.00 0.00 4.08
189 190 6.348622 CCACCTAAATATGTTTGTACGTTGCA 60.349 38.462 0.00 0.00 0.00 4.08
190 191 6.025280 CCACCTAAATATGTTTGTACGTTGC 58.975 40.000 0.00 0.00 0.00 4.17
191 192 6.025280 GCCACCTAAATATGTTTGTACGTTG 58.975 40.000 0.00 0.00 0.00 4.10
192 193 5.706369 TGCCACCTAAATATGTTTGTACGTT 59.294 36.000 0.00 0.00 0.00 3.99
193 194 5.247084 TGCCACCTAAATATGTTTGTACGT 58.753 37.500 0.00 0.00 0.00 3.57
194 195 5.804692 TGCCACCTAAATATGTTTGTACG 57.195 39.130 0.00 0.00 0.00 3.67
195 196 8.996024 AAAATGCCACCTAAATATGTTTGTAC 57.004 30.769 0.00 0.00 0.00 2.90
196 197 7.971168 CGAAAATGCCACCTAAATATGTTTGTA 59.029 33.333 0.00 0.00 0.00 2.41
197 198 6.811170 CGAAAATGCCACCTAAATATGTTTGT 59.189 34.615 0.00 0.00 0.00 2.83
198 199 6.255453 CCGAAAATGCCACCTAAATATGTTTG 59.745 38.462 0.00 0.00 0.00 2.93
199 200 6.153680 TCCGAAAATGCCACCTAAATATGTTT 59.846 34.615 0.00 0.00 0.00 2.83
200 201 5.654650 TCCGAAAATGCCACCTAAATATGTT 59.345 36.000 0.00 0.00 0.00 2.71
201 202 5.197451 TCCGAAAATGCCACCTAAATATGT 58.803 37.500 0.00 0.00 0.00 2.29
202 203 5.766150 TCCGAAAATGCCACCTAAATATG 57.234 39.130 0.00 0.00 0.00 1.78
203 204 5.833131 ACATCCGAAAATGCCACCTAAATAT 59.167 36.000 0.00 0.00 0.00 1.28
204 205 5.197451 ACATCCGAAAATGCCACCTAAATA 58.803 37.500 0.00 0.00 0.00 1.40
205 206 4.023291 ACATCCGAAAATGCCACCTAAAT 58.977 39.130 0.00 0.00 0.00 1.40
206 207 3.426615 ACATCCGAAAATGCCACCTAAA 58.573 40.909 0.00 0.00 0.00 1.85
207 208 3.080300 ACATCCGAAAATGCCACCTAA 57.920 42.857 0.00 0.00 0.00 2.69
208 209 2.799126 ACATCCGAAAATGCCACCTA 57.201 45.000 0.00 0.00 0.00 3.08
209 210 1.923356 AACATCCGAAAATGCCACCT 58.077 45.000 0.00 0.00 0.00 4.00
210 211 4.385358 AATAACATCCGAAAATGCCACC 57.615 40.909 0.00 0.00 0.00 4.61
211 212 6.640907 GGAATAATAACATCCGAAAATGCCAC 59.359 38.462 0.00 0.00 0.00 5.01
212 213 6.322456 TGGAATAATAACATCCGAAAATGCCA 59.678 34.615 0.00 0.00 35.96 4.92
213 214 6.744112 TGGAATAATAACATCCGAAAATGCC 58.256 36.000 0.00 0.00 35.96 4.40
214 215 8.081633 TCATGGAATAATAACATCCGAAAATGC 58.918 33.333 0.00 0.00 35.96 3.56
217 218 9.348476 TCATCATGGAATAATAACATCCGAAAA 57.652 29.630 0.00 0.00 35.96 2.29
218 219 8.783093 GTCATCATGGAATAATAACATCCGAAA 58.217 33.333 0.00 0.00 35.96 3.46
219 220 7.936301 TGTCATCATGGAATAATAACATCCGAA 59.064 33.333 0.00 0.00 35.96 4.30
220 221 7.449247 TGTCATCATGGAATAATAACATCCGA 58.551 34.615 0.00 0.00 35.96 4.55
221 222 7.388776 ACTGTCATCATGGAATAATAACATCCG 59.611 37.037 0.00 0.00 35.96 4.18
222 223 8.627208 ACTGTCATCATGGAATAATAACATCC 57.373 34.615 0.00 0.00 0.00 3.51
228 229 9.476202 CGAAACTACTGTCATCATGGAATAATA 57.524 33.333 0.00 0.00 0.00 0.98
229 230 8.204160 TCGAAACTACTGTCATCATGGAATAAT 58.796 33.333 0.00 0.00 0.00 1.28
230 231 7.552459 TCGAAACTACTGTCATCATGGAATAA 58.448 34.615 0.00 0.00 0.00 1.40
231 232 7.107639 TCGAAACTACTGTCATCATGGAATA 57.892 36.000 0.00 0.00 0.00 1.75
232 233 5.977635 TCGAAACTACTGTCATCATGGAAT 58.022 37.500 0.00 0.00 0.00 3.01
233 234 5.400066 TCGAAACTACTGTCATCATGGAA 57.600 39.130 0.00 0.00 0.00 3.53
234 235 5.351458 CATCGAAACTACTGTCATCATGGA 58.649 41.667 0.00 0.00 0.00 3.41
235 236 4.509230 CCATCGAAACTACTGTCATCATGG 59.491 45.833 0.00 0.00 0.00 3.66
236 237 5.233050 GTCCATCGAAACTACTGTCATCATG 59.767 44.000 0.00 0.00 0.00 3.07
237 238 5.105351 TGTCCATCGAAACTACTGTCATCAT 60.105 40.000 0.00 0.00 0.00 2.45
238 239 4.219725 TGTCCATCGAAACTACTGTCATCA 59.780 41.667 0.00 0.00 0.00 3.07
239 240 4.744570 TGTCCATCGAAACTACTGTCATC 58.255 43.478 0.00 0.00 0.00 2.92
240 241 4.220821 ACTGTCCATCGAAACTACTGTCAT 59.779 41.667 0.00 0.00 0.00 3.06
241 242 3.572682 ACTGTCCATCGAAACTACTGTCA 59.427 43.478 0.00 0.00 0.00 3.58
242 243 3.921021 CACTGTCCATCGAAACTACTGTC 59.079 47.826 0.00 0.00 0.00 3.51
243 244 3.306088 CCACTGTCCATCGAAACTACTGT 60.306 47.826 0.00 0.00 0.00 3.55
244 245 3.254060 CCACTGTCCATCGAAACTACTG 58.746 50.000 0.00 0.00 0.00 2.74
245 246 2.233922 CCCACTGTCCATCGAAACTACT 59.766 50.000 0.00 0.00 0.00 2.57
246 247 2.618053 CCCACTGTCCATCGAAACTAC 58.382 52.381 0.00 0.00 0.00 2.73
247 248 1.066430 GCCCACTGTCCATCGAAACTA 60.066 52.381 0.00 0.00 0.00 2.24
248 249 0.321653 GCCCACTGTCCATCGAAACT 60.322 55.000 0.00 0.00 0.00 2.66
249 250 0.605319 TGCCCACTGTCCATCGAAAC 60.605 55.000 0.00 0.00 0.00 2.78
250 251 0.605319 GTGCCCACTGTCCATCGAAA 60.605 55.000 0.00 0.00 0.00 3.46
251 252 1.003839 GTGCCCACTGTCCATCGAA 60.004 57.895 0.00 0.00 0.00 3.71
252 253 1.763546 TTGTGCCCACTGTCCATCGA 61.764 55.000 0.00 0.00 0.00 3.59
253 254 0.677731 ATTGTGCCCACTGTCCATCG 60.678 55.000 0.00 0.00 0.00 3.84
254 255 2.418368 TATTGTGCCCACTGTCCATC 57.582 50.000 0.00 0.00 0.00 3.51
255 256 2.897271 TTATTGTGCCCACTGTCCAT 57.103 45.000 0.00 0.00 0.00 3.41
256 257 2.897271 ATTATTGTGCCCACTGTCCA 57.103 45.000 0.00 0.00 0.00 4.02
257 258 2.427095 GGAATTATTGTGCCCACTGTCC 59.573 50.000 0.00 0.00 0.00 4.02
258 259 3.356290 AGGAATTATTGTGCCCACTGTC 58.644 45.455 0.00 0.00 0.00 3.51
259 260 3.010584 AGAGGAATTATTGTGCCCACTGT 59.989 43.478 0.00 0.00 0.00 3.55
260 261 3.624777 AGAGGAATTATTGTGCCCACTG 58.375 45.455 0.00 0.00 0.00 3.66
261 262 4.273318 GAAGAGGAATTATTGTGCCCACT 58.727 43.478 0.00 0.00 0.00 4.00
262 263 3.381590 GGAAGAGGAATTATTGTGCCCAC 59.618 47.826 0.00 0.00 0.00 4.61
263 264 3.631250 GGAAGAGGAATTATTGTGCCCA 58.369 45.455 0.00 0.00 0.00 5.36
264 265 2.618709 CGGAAGAGGAATTATTGTGCCC 59.381 50.000 0.00 0.00 0.00 5.36
265 266 3.279434 ACGGAAGAGGAATTATTGTGCC 58.721 45.455 0.00 0.00 0.00 5.01
266 267 4.662145 CAACGGAAGAGGAATTATTGTGC 58.338 43.478 0.00 0.00 0.00 4.57
267 268 4.155826 TGCAACGGAAGAGGAATTATTGTG 59.844 41.667 0.00 0.00 0.00 3.33
268 269 4.331968 TGCAACGGAAGAGGAATTATTGT 58.668 39.130 0.00 0.00 0.00 2.71
269 270 4.963276 TGCAACGGAAGAGGAATTATTG 57.037 40.909 0.00 0.00 0.00 1.90
270 271 5.310720 GTTGCAACGGAAGAGGAATTATT 57.689 39.130 14.90 0.00 0.00 1.40
271 272 4.965119 GTTGCAACGGAAGAGGAATTAT 57.035 40.909 14.90 0.00 0.00 1.28
285 286 2.265073 ATATGCCCGTGCGTTGCAAC 62.265 55.000 19.89 19.89 41.47 4.17
286 287 2.043405 ATATGCCCGTGCGTTGCAA 61.043 52.632 0.00 0.00 41.47 4.08
287 288 2.437537 ATATGCCCGTGCGTTGCA 60.438 55.556 8.11 8.11 41.78 4.08
288 289 2.024588 CATATGCCCGTGCGTTGC 59.975 61.111 0.00 0.00 41.78 4.17
289 290 1.062365 CACATATGCCCGTGCGTTG 59.938 57.895 1.58 0.00 41.78 4.10
290 291 3.496711 CACATATGCCCGTGCGTT 58.503 55.556 1.58 0.00 41.78 4.84
300 301 8.971321 GCCTTTGTTCTAATATTTGCACATATG 58.029 33.333 6.13 0.00 0.00 1.78
301 302 8.917088 AGCCTTTGTTCTAATATTTGCACATAT 58.083 29.630 3.62 0.00 0.00 1.78
302 303 8.190122 CAGCCTTTGTTCTAATATTTGCACATA 58.810 33.333 3.62 0.00 0.00 2.29
303 304 7.037438 CAGCCTTTGTTCTAATATTTGCACAT 58.963 34.615 3.62 0.00 0.00 3.21
304 305 6.208402 TCAGCCTTTGTTCTAATATTTGCACA 59.792 34.615 0.00 0.00 0.00 4.57
305 306 6.620678 TCAGCCTTTGTTCTAATATTTGCAC 58.379 36.000 0.00 0.00 0.00 4.57
306 307 6.832520 TCAGCCTTTGTTCTAATATTTGCA 57.167 33.333 0.00 0.00 0.00 4.08
307 308 7.274250 CAGTTCAGCCTTTGTTCTAATATTTGC 59.726 37.037 0.00 0.00 0.00 3.68
308 309 8.299570 ACAGTTCAGCCTTTGTTCTAATATTTG 58.700 33.333 0.00 0.00 0.00 2.32
309 310 8.409358 ACAGTTCAGCCTTTGTTCTAATATTT 57.591 30.769 0.00 0.00 0.00 1.40
310 311 8.299570 CAACAGTTCAGCCTTTGTTCTAATATT 58.700 33.333 0.00 0.00 31.84 1.28
589 2714 0.032813 CAAGGGATGCATTGGGGAGT 60.033 55.000 0.00 0.00 0.00 3.85
598 2723 2.158623 ACAAGACTTGACAAGGGATGCA 60.159 45.455 21.95 0.00 0.00 3.96
647 2776 2.733858 GCTGTGCCTGTCGTTTCAAAAA 60.734 45.455 0.00 0.00 0.00 1.94
648 2777 1.202245 GCTGTGCCTGTCGTTTCAAAA 60.202 47.619 0.00 0.00 0.00 2.44
649 2778 0.380378 GCTGTGCCTGTCGTTTCAAA 59.620 50.000 0.00 0.00 0.00 2.69
650 2779 0.463654 AGCTGTGCCTGTCGTTTCAA 60.464 50.000 0.00 0.00 0.00 2.69
651 2780 0.391228 TAGCTGTGCCTGTCGTTTCA 59.609 50.000 0.00 0.00 0.00 2.69
652 2781 0.790814 GTAGCTGTGCCTGTCGTTTC 59.209 55.000 0.00 0.00 0.00 2.78
653 2782 0.393077 AGTAGCTGTGCCTGTCGTTT 59.607 50.000 0.00 0.00 0.00 3.60
654 2783 1.202582 CTAGTAGCTGTGCCTGTCGTT 59.797 52.381 0.00 0.00 0.00 3.85
655 2784 0.811915 CTAGTAGCTGTGCCTGTCGT 59.188 55.000 0.00 0.00 0.00 4.34
656 2785 0.811915 ACTAGTAGCTGTGCCTGTCG 59.188 55.000 0.00 0.00 0.00 4.35
667 2796 4.379652 ACTTCTAGACGCCTACTAGTAGC 58.620 47.826 22.39 16.52 38.22 3.58
707 2866 3.011119 ACGTCAGACTAGGCAAGTAGAG 58.989 50.000 0.00 0.00 39.07 2.43
766 2938 1.421646 GGAGAGAGAGAGAGAGGGAGG 59.578 61.905 0.00 0.00 0.00 4.30
770 2942 2.105477 CAGAGGGAGAGAGAGAGAGAGG 59.895 59.091 0.00 0.00 0.00 3.69
786 2974 4.500545 CCAGTGATTACGGAGATTCAGAGG 60.501 50.000 0.00 0.00 0.00 3.69
951 3176 3.547649 AAAACGAACCGTGCCTAAATC 57.452 42.857 0.00 0.00 39.99 2.17
1012 3237 1.394917 CAGATCCTTGCGTTTCTTCCG 59.605 52.381 0.00 0.00 0.00 4.30
1029 3254 3.519107 TCCAGTAGCAATGTTCATCCAGA 59.481 43.478 0.00 0.00 0.00 3.86
1042 3267 1.070134 GTCTGTGTGGTTCCAGTAGCA 59.930 52.381 0.00 0.00 0.00 3.49
1132 3366 0.456628 GGAGGTAGAACAGAGCCGAC 59.543 60.000 0.00 0.00 0.00 4.79
1267 3634 4.675190 ATTTCAGATGCGAAACAGAGTG 57.325 40.909 0.00 0.00 37.69 3.51
1306 3673 4.201773 TGTTACACAGAACAAAACGCTGAG 60.202 41.667 0.00 0.00 36.39 3.35
1534 3906 1.772453 AGAAAGTCCCCCGTTCTCAAA 59.228 47.619 0.00 0.00 37.31 2.69
1603 3975 2.702751 TTTTCTCGCAACCGCTCGGA 62.703 55.000 15.95 0.00 38.96 4.55
1679 4051 2.862541 AGTGTTTACAATGCCAGCAGA 58.137 42.857 0.00 0.00 0.00 4.26
1764 4136 2.204463 TGATGTCATTCCCCTGCCTTA 58.796 47.619 0.00 0.00 0.00 2.69
1975 4347 5.111989 TCTTCTGCACCTGATTTAGATTCG 58.888 41.667 0.00 0.00 0.00 3.34
2056 4428 5.696724 CCGTAAATACTGCTCTTCCTTATGG 59.303 44.000 0.00 0.00 0.00 2.74
2178 4651 5.988287 ACAACATTTGGGTGAGACAAAATT 58.012 33.333 0.00 0.00 40.74 1.82
2179 4652 5.600696 GACAACATTTGGGTGAGACAAAAT 58.399 37.500 0.00 0.00 40.74 1.82
2180 4653 4.439426 CGACAACATTTGGGTGAGACAAAA 60.439 41.667 0.00 0.00 40.74 2.44
2202 4675 6.245115 TCAATCAATATGCAGAATAAGCCG 57.755 37.500 0.00 0.00 0.00 5.52
2233 4709 3.395639 TCCAATGGTTACACGACTCAAC 58.604 45.455 0.00 0.00 0.00 3.18
2245 4729 9.942850 CCAACTAAAATTTTCTATCCAATGGTT 57.057 29.630 6.72 0.00 0.00 3.67
2246 4730 9.320295 TCCAACTAAAATTTTCTATCCAATGGT 57.680 29.630 6.72 0.00 0.00 3.55
2247 4731 9.807649 CTCCAACTAAAATTTTCTATCCAATGG 57.192 33.333 6.72 0.00 0.00 3.16
2248 4732 9.305925 GCTCCAACTAAAATTTTCTATCCAATG 57.694 33.333 6.72 0.00 0.00 2.82
2249 4733 9.034800 TGCTCCAACTAAAATTTTCTATCCAAT 57.965 29.630 6.72 0.00 0.00 3.16
2250 4734 8.415950 TGCTCCAACTAAAATTTTCTATCCAA 57.584 30.769 6.72 0.00 0.00 3.53
2251 4735 7.888021 TCTGCTCCAACTAAAATTTTCTATCCA 59.112 33.333 6.72 0.00 0.00 3.41
2309 5595 4.068599 TCGAAGCAAACATCATGGTGTAA 58.931 39.130 13.06 0.00 0.00 2.41
2337 5630 7.236847 TGAAGGGAGAAAGGATCTTTAGTAACA 59.763 37.037 0.00 0.00 38.96 2.41
2338 5631 7.621796 TGAAGGGAGAAAGGATCTTTAGTAAC 58.378 38.462 0.00 0.00 38.96 2.50
2455 5754 7.522236 GCCTTTGCTTTTCTTAACACTACATCT 60.522 37.037 0.00 0.00 33.53 2.90
2457 5756 6.040391 TGCCTTTGCTTTTCTTAACACTACAT 59.960 34.615 0.00 0.00 38.71 2.29
2461 5760 5.337578 TTGCCTTTGCTTTTCTTAACACT 57.662 34.783 0.00 0.00 38.71 3.55
2495 5794 0.734942 CGCAAAATGCTTCCAGCCTG 60.735 55.000 0.43 0.00 42.25 4.85
2499 5798 1.411394 CACACGCAAAATGCTTCCAG 58.589 50.000 0.43 0.00 42.25 3.86
2593 5892 8.684386 TTGTAAAGGGATTTGCGAATGATATA 57.316 30.769 3.20 0.00 0.00 0.86
2701 6006 5.179929 CCAGAATCTTTTGGCAAACAATTCC 59.820 40.000 26.86 16.94 39.21 3.01
2858 6543 4.464008 TCTGTTTCTTGAATCTTGTGGCT 58.536 39.130 0.00 0.00 0.00 4.75
2934 6635 6.274157 TGTACTCTGAGCTCTTTCCTTTAG 57.726 41.667 16.19 0.89 0.00 1.85
2936 6637 5.753721 ATGTACTCTGAGCTCTTTCCTTT 57.246 39.130 16.19 0.00 0.00 3.11
2955 6656 5.700402 ACTGGACCTGAGCTTTATTATGT 57.300 39.130 5.22 0.00 0.00 2.29
2970 6671 1.807142 GCAGCTGAAACTAACTGGACC 59.193 52.381 20.43 0.00 0.00 4.46
3038 6741 9.787435 ACTACAGTTCATCCACTTAAACATAAA 57.213 29.630 0.00 0.00 0.00 1.40
3105 6809 1.404181 CCTGACATGACCCACAGTACG 60.404 57.143 0.00 0.00 0.00 3.67
3117 6821 6.481313 CCATAATGTAACTCTGTCCTGACATG 59.519 42.308 0.00 0.00 41.01 3.21
3419 8339 2.669240 CTCCCGAGTCCCCCAAAC 59.331 66.667 0.00 0.00 0.00 2.93
3421 8341 2.486410 AATCCTCCCGAGTCCCCCAA 62.486 60.000 0.00 0.00 0.00 4.12
3483 8403 5.711976 ACAGACAGGGAAAATTATGTTGGAG 59.288 40.000 0.00 0.00 0.00 3.86
3489 8409 9.492973 AAAATGAAACAGACAGGGAAAATTATG 57.507 29.630 0.00 0.00 0.00 1.90
3513 8434 7.353414 TCACCATTGTGGATTGAAGTAAAAA 57.647 32.000 2.45 0.00 40.96 1.94
3514 8435 6.968263 TCACCATTGTGGATTGAAGTAAAA 57.032 33.333 2.45 0.00 40.96 1.52
3515 8436 7.309744 GGAATCACCATTGTGGATTGAAGTAAA 60.310 37.037 2.45 0.00 40.96 2.01
3801 8723 1.267806 CAACAGCTTGTGTGTCCCATC 59.732 52.381 0.00 0.00 40.26 3.51
3802 8724 1.321474 CAACAGCTTGTGTGTCCCAT 58.679 50.000 0.00 0.00 40.26 4.00
3803 8725 0.034574 ACAACAGCTTGTGTGTCCCA 60.035 50.000 0.00 0.00 40.26 4.37
3804 8726 1.961793 TACAACAGCTTGTGTGTCCC 58.038 50.000 8.94 0.00 40.98 4.46
3805 8727 3.304659 CCATTACAACAGCTTGTGTGTCC 60.305 47.826 8.94 0.00 40.98 4.02
3806 8728 3.315191 ACCATTACAACAGCTTGTGTGTC 59.685 43.478 8.94 0.00 40.98 3.67
3807 8729 3.287222 ACCATTACAACAGCTTGTGTGT 58.713 40.909 8.94 8.46 40.98 3.72
3808 8730 3.988379 ACCATTACAACAGCTTGTGTG 57.012 42.857 8.94 4.60 40.98 3.82
3809 8731 5.337578 AAAACCATTACAACAGCTTGTGT 57.662 34.783 1.14 2.96 40.98 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.