Multiple sequence alignment - TraesCS3D01G455300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G455300 chr3D 100.000 3440 0 0 1 3440 561470057 561466618 0.000000e+00 6353.0
1 TraesCS3D01G455300 chr3D 84.158 202 25 5 247 444 361801886 361801688 4.530000e-44 189.0
2 TraesCS3D01G455300 chr3D 90.244 123 10 2 707 828 38367263 38367142 3.550000e-35 159.0
3 TraesCS3D01G455300 chr3D 76.265 257 48 11 660 913 38293517 38293271 1.300000e-24 124.0
4 TraesCS3D01G455300 chr3D 94.444 36 2 0 391 426 488099619 488099654 4.800000e-04 56.5
5 TraesCS3D01G455300 chr3A 91.684 1467 80 16 1650 3083 697447670 697446213 0.000000e+00 1995.0
6 TraesCS3D01G455300 chr3A 92.375 1141 62 9 523 1649 697448904 697447775 0.000000e+00 1602.0
7 TraesCS3D01G455300 chr3A 86.031 451 47 12 3 444 569227423 569226980 1.450000e-128 470.0
8 TraesCS3D01G455300 chr3A 87.258 361 38 7 3085 3440 697446086 697445729 4.130000e-109 405.0
9 TraesCS3D01G455300 chr3A 82.700 237 21 11 212 448 141011586 141011370 3.500000e-45 193.0
10 TraesCS3D01G455300 chr3A 91.304 115 9 1 707 820 49494014 49493900 4.600000e-34 156.0
11 TraesCS3D01G455300 chr3A 88.618 123 12 2 707 828 49506704 49506583 7.690000e-32 148.0
12 TraesCS3D01G455300 chr3A 87.402 127 14 2 696 821 49819514 49819639 9.950000e-31 145.0
13 TraesCS3D01G455300 chr2B 87.473 463 38 7 3 447 143614586 143614126 1.830000e-142 516.0
14 TraesCS3D01G455300 chr2B 88.670 203 13 6 243 443 594201540 594201346 4.440000e-59 239.0
15 TraesCS3D01G455300 chr3B 87.473 455 41 4 3 443 762827046 762827498 8.520000e-141 510.0
16 TraesCS3D01G455300 chr3B 81.731 208 32 6 707 912 61100576 61100373 5.900000e-38 169.0
17 TraesCS3D01G455300 chr3B 80.930 215 29 7 707 913 61052229 61052019 3.550000e-35 159.0
18 TraesCS3D01G455300 chr3B 88.710 124 12 2 707 829 60872097 60871975 2.140000e-32 150.0
19 TraesCS3D01G455300 chr3B 89.256 121 8 2 323 443 447973486 447973601 2.770000e-31 147.0
20 TraesCS3D01G455300 chr3B 77.570 214 41 5 1793 2001 60870196 60869985 4.660000e-24 122.0
21 TraesCS3D01G455300 chr5A 86.123 454 35 12 3 443 42284491 42284929 6.720000e-127 464.0
22 TraesCS3D01G455300 chr5B 86.620 426 40 8 4 415 656041766 656041344 4.050000e-124 455.0
23 TraesCS3D01G455300 chr7A 82.789 459 44 9 3 444 79600756 79600316 9.010000e-101 377.0
24 TraesCS3D01G455300 chr6D 89.000 200 18 4 246 444 463616152 463616348 9.540000e-61 244.0
25 TraesCS3D01G455300 chr2D 89.655 116 11 1 311 426 79529432 79529546 2.770000e-31 147.0
26 TraesCS3D01G455300 chr2D 85.870 92 7 4 199 289 79529352 79529438 3.660000e-15 93.5
27 TraesCS3D01G455300 chr6B 79.137 139 21 4 3 134 23349256 23349393 4.730000e-14 89.8
28 TraesCS3D01G455300 chr1A 84.783 92 11 3 3 92 255847300 255847390 4.730000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G455300 chr3D 561466618 561470057 3439 True 6353 6353 100.000 1 3440 1 chr3D.!!$R4 3439
1 TraesCS3D01G455300 chr3A 697445729 697448904 3175 True 1334 1995 90.439 523 3440 3 chr3A.!!$R5 2917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 356 0.033991 AGGTAGAAGAGGAGCTGCGA 60.034 55.0 0.00 0.00 0.00 5.10 F
455 456 0.037046 GCTGGCCACTTTGAAATGGG 60.037 55.0 0.00 0.00 36.41 4.00 F
545 546 0.248843 CCTTCTTCCTCGCAAGCTCT 59.751 55.0 0.00 0.00 37.18 4.09 F
1474 1489 0.307146 GGATGCGAGATCAAAGCAGC 59.693 55.0 14.19 14.19 44.55 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1267 1282 0.031857 TTGGTGCGAATTGCCTGTTG 59.968 50.0 0.0 0.0 45.60 3.33 R
1268 1283 0.031994 GTTGGTGCGAATTGCCTGTT 59.968 50.0 0.0 0.0 45.60 3.16 R
1599 1614 0.097674 CTTTCCGAGCATTCCAAGCG 59.902 55.0 0.0 0.0 37.01 4.68 R
3083 3360 0.036294 GAAGGGCAGCTACGGAAGTT 60.036 55.0 0.0 0.0 46.40 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.913126 GACGAGATGGAAAGCCGT 57.087 55.556 0.00 0.00 36.79 5.68
18 19 2.373938 GACGAGATGGAAAGCCGTG 58.626 57.895 0.00 0.00 36.79 4.94
19 20 1.079127 ACGAGATGGAAAGCCGTGG 60.079 57.895 0.00 0.00 36.79 4.94
20 21 2.464459 CGAGATGGAAAGCCGTGGC 61.464 63.158 1.67 1.67 42.33 5.01
21 22 2.044946 AGATGGAAAGCCGTGGCC 60.045 61.111 7.39 0.00 43.17 5.36
22 23 2.361104 GATGGAAAGCCGTGGCCA 60.361 61.111 0.00 0.00 43.17 5.36
23 24 1.754234 GATGGAAAGCCGTGGCCAT 60.754 57.895 9.72 3.60 43.46 4.40
24 25 2.008268 GATGGAAAGCCGTGGCCATG 62.008 60.000 18.73 18.73 41.00 3.66
25 26 3.451894 GGAAAGCCGTGGCCATGG 61.452 66.667 35.99 35.99 43.17 3.66
26 27 2.361104 GAAAGCCGTGGCCATGGA 60.361 61.111 42.54 1.18 43.17 3.41
27 28 2.361610 AAAGCCGTGGCCATGGAG 60.362 61.111 42.54 21.12 43.17 3.86
28 29 3.210012 AAAGCCGTGGCCATGGAGT 62.210 57.895 42.54 27.51 43.17 3.85
29 30 3.628646 AAGCCGTGGCCATGGAGTC 62.629 63.158 42.54 26.70 43.17 3.36
31 32 3.770040 CCGTGGCCATGGAGTCGA 61.770 66.667 36.99 0.00 39.90 4.20
32 33 2.501128 CGTGGCCATGGAGTCGAT 59.499 61.111 18.40 0.00 0.00 3.59
33 34 1.153369 CGTGGCCATGGAGTCGATT 60.153 57.895 18.40 0.00 0.00 3.34
34 35 0.744414 CGTGGCCATGGAGTCGATTT 60.744 55.000 18.40 0.00 0.00 2.17
35 36 0.734889 GTGGCCATGGAGTCGATTTG 59.265 55.000 18.40 0.00 0.00 2.32
36 37 1.031571 TGGCCATGGAGTCGATTTGC 61.032 55.000 18.40 0.00 0.00 3.68
37 38 0.749454 GGCCATGGAGTCGATTTGCT 60.749 55.000 18.40 0.00 0.00 3.91
38 39 0.379669 GCCATGGAGTCGATTTGCTG 59.620 55.000 18.40 0.00 0.00 4.41
39 40 1.019673 CCATGGAGTCGATTTGCTGG 58.980 55.000 5.56 0.00 0.00 4.85
40 41 1.019673 CATGGAGTCGATTTGCTGGG 58.980 55.000 0.00 0.00 0.00 4.45
41 42 0.911769 ATGGAGTCGATTTGCTGGGA 59.088 50.000 0.00 0.00 0.00 4.37
42 43 0.036388 TGGAGTCGATTTGCTGGGAC 60.036 55.000 0.00 0.00 0.00 4.46
43 44 1.084370 GGAGTCGATTTGCTGGGACG 61.084 60.000 0.00 0.00 34.68 4.79
44 45 1.079127 AGTCGATTTGCTGGGACGG 60.079 57.895 0.00 0.00 34.68 4.79
45 46 2.106683 GTCGATTTGCTGGGACGGG 61.107 63.158 0.00 0.00 33.56 5.28
46 47 2.824041 CGATTTGCTGGGACGGGG 60.824 66.667 0.00 0.00 33.56 5.73
47 48 2.440247 GATTTGCTGGGACGGGGG 60.440 66.667 0.00 0.00 33.56 5.40
48 49 4.759205 ATTTGCTGGGACGGGGGC 62.759 66.667 0.00 0.00 33.56 5.80
66 67 4.129737 ACGACGGTGATGGCGGAG 62.130 66.667 0.00 0.00 0.00 4.63
84 85 3.716006 CTGCAACGACGGCTGGTG 61.716 66.667 0.00 0.00 0.00 4.17
87 88 3.345808 CAACGACGGCTGGTGGTG 61.346 66.667 0.00 0.00 37.67 4.17
88 89 4.619227 AACGACGGCTGGTGGTGG 62.619 66.667 0.00 0.00 37.67 4.61
90 91 4.742201 CGACGGCTGGTGGTGGAG 62.742 72.222 0.00 0.00 0.00 3.86
91 92 3.311110 GACGGCTGGTGGTGGAGA 61.311 66.667 0.00 0.00 0.00 3.71
92 93 2.607750 ACGGCTGGTGGTGGAGAT 60.608 61.111 0.00 0.00 0.00 2.75
93 94 2.124983 CGGCTGGTGGTGGAGATG 60.125 66.667 0.00 0.00 0.00 2.90
94 95 2.439156 GGCTGGTGGTGGAGATGC 60.439 66.667 0.00 0.00 0.00 3.91
95 96 2.821366 GCTGGTGGTGGAGATGCG 60.821 66.667 0.00 0.00 0.00 4.73
96 97 2.981302 CTGGTGGTGGAGATGCGA 59.019 61.111 0.00 0.00 0.00 5.10
97 98 1.448540 CTGGTGGTGGAGATGCGAC 60.449 63.158 0.00 0.00 0.00 5.19
98 99 2.509336 GGTGGTGGAGATGCGACG 60.509 66.667 0.00 0.00 0.00 5.12
99 100 2.509336 GTGGTGGAGATGCGACGG 60.509 66.667 0.00 0.00 0.00 4.79
100 101 3.770040 TGGTGGAGATGCGACGGG 61.770 66.667 0.00 0.00 0.00 5.28
101 102 4.530857 GGTGGAGATGCGACGGGG 62.531 72.222 0.00 0.00 0.00 5.73
102 103 3.771160 GTGGAGATGCGACGGGGT 61.771 66.667 0.00 0.00 0.00 4.95
103 104 3.770040 TGGAGATGCGACGGGGTG 61.770 66.667 0.00 0.00 0.00 4.61
144 145 4.115199 GGTCGGGGGAGCTGCAAT 62.115 66.667 7.79 0.00 0.00 3.56
145 146 2.825836 GTCGGGGGAGCTGCAATG 60.826 66.667 7.79 0.00 0.00 2.82
146 147 4.113815 TCGGGGGAGCTGCAATGG 62.114 66.667 7.79 0.00 0.00 3.16
149 150 4.802051 GGGGAGCTGCAATGGCGA 62.802 66.667 7.79 0.00 45.35 5.54
150 151 3.512516 GGGAGCTGCAATGGCGAC 61.513 66.667 7.79 0.00 45.35 5.19
151 152 3.512516 GGAGCTGCAATGGCGACC 61.513 66.667 0.00 0.00 45.35 4.79
152 153 2.437359 GAGCTGCAATGGCGACCT 60.437 61.111 1.02 0.00 45.35 3.85
153 154 2.437359 AGCTGCAATGGCGACCTC 60.437 61.111 1.02 0.00 45.35 3.85
154 155 2.747460 GCTGCAATGGCGACCTCA 60.747 61.111 0.00 0.00 45.35 3.86
155 156 2.758089 GCTGCAATGGCGACCTCAG 61.758 63.158 0.00 0.00 45.35 3.35
156 157 1.078918 CTGCAATGGCGACCTCAGA 60.079 57.895 0.00 0.00 45.35 3.27
157 158 1.364626 CTGCAATGGCGACCTCAGAC 61.365 60.000 0.00 0.00 45.35 3.51
158 159 1.375908 GCAATGGCGACCTCAGACA 60.376 57.895 0.00 0.00 0.00 3.41
159 160 0.745845 GCAATGGCGACCTCAGACAT 60.746 55.000 0.00 0.00 0.00 3.06
160 161 1.012086 CAATGGCGACCTCAGACATG 58.988 55.000 0.00 0.00 0.00 3.21
161 162 0.904649 AATGGCGACCTCAGACATGA 59.095 50.000 0.00 0.00 0.00 3.07
162 163 0.176680 ATGGCGACCTCAGACATGAC 59.823 55.000 0.00 0.00 0.00 3.06
163 164 1.517257 GGCGACCTCAGACATGACG 60.517 63.158 0.00 0.00 0.00 4.35
164 165 1.506718 GCGACCTCAGACATGACGA 59.493 57.895 0.00 0.00 0.00 4.20
165 166 0.798771 GCGACCTCAGACATGACGAC 60.799 60.000 0.00 0.00 0.00 4.34
166 167 0.179161 CGACCTCAGACATGACGACC 60.179 60.000 0.00 0.00 0.00 4.79
167 168 0.888619 GACCTCAGACATGACGACCA 59.111 55.000 0.00 0.00 0.00 4.02
168 169 0.603569 ACCTCAGACATGACGACCAC 59.396 55.000 0.00 0.00 0.00 4.16
169 170 0.108615 CCTCAGACATGACGACCACC 60.109 60.000 0.00 0.00 0.00 4.61
170 171 0.891373 CTCAGACATGACGACCACCT 59.109 55.000 0.00 0.00 0.00 4.00
171 172 0.888619 TCAGACATGACGACCACCTC 59.111 55.000 0.00 0.00 0.00 3.85
193 194 4.695231 ACGACGACGGCAACCTCG 62.695 66.667 12.58 1.20 44.46 4.63
271 272 4.210304 GCTTCGTGGTCGCGCATC 62.210 66.667 8.75 0.00 36.96 3.91
272 273 3.554692 CTTCGTGGTCGCGCATCC 61.555 66.667 8.75 9.75 36.96 3.51
273 274 4.365505 TTCGTGGTCGCGCATCCA 62.366 61.111 15.13 15.13 36.96 3.41
274 275 3.657448 TTCGTGGTCGCGCATCCAT 62.657 57.895 20.55 0.00 36.09 3.41
275 276 3.928769 CGTGGTCGCGCATCCATG 61.929 66.667 20.55 20.44 36.09 3.66
276 277 2.511373 GTGGTCGCGCATCCATGA 60.511 61.111 20.55 0.00 36.09 3.07
277 278 2.511373 TGGTCGCGCATCCATGAC 60.511 61.111 15.13 9.08 0.00 3.06
278 279 3.630148 GGTCGCGCATCCATGACG 61.630 66.667 8.75 0.00 32.17 4.35
279 280 3.630148 GTCGCGCATCCATGACGG 61.630 66.667 8.75 0.00 32.20 4.79
285 286 3.860605 CATCCATGACGGCCCCGA 61.861 66.667 14.44 0.00 42.83 5.14
286 287 3.861797 ATCCATGACGGCCCCGAC 61.862 66.667 14.44 8.03 42.83 4.79
299 300 4.856607 CCGACGGGCTCGCTTCTC 62.857 72.222 5.51 0.00 41.46 2.87
300 301 3.816524 CGACGGGCTCGCTTCTCT 61.817 66.667 5.51 0.00 40.63 3.10
301 302 2.103340 GACGGGCTCGCTTCTCTC 59.897 66.667 5.51 0.00 40.63 3.20
302 303 2.361865 ACGGGCTCGCTTCTCTCT 60.362 61.111 5.51 0.00 40.63 3.10
303 304 2.103934 CGGGCTCGCTTCTCTCTG 59.896 66.667 0.00 0.00 0.00 3.35
304 305 2.705821 CGGGCTCGCTTCTCTCTGT 61.706 63.158 0.00 0.00 0.00 3.41
305 306 1.153667 GGGCTCGCTTCTCTCTGTG 60.154 63.158 0.00 0.00 0.00 3.66
306 307 1.809209 GGCTCGCTTCTCTCTGTGC 60.809 63.158 0.00 0.00 0.00 4.57
309 310 3.456798 CGCTTCTCTCTGTGCGTG 58.543 61.111 0.00 0.00 42.93 5.34
310 311 2.724708 CGCTTCTCTCTGTGCGTGC 61.725 63.158 0.00 0.00 42.93 5.34
311 312 1.373999 GCTTCTCTCTGTGCGTGCT 60.374 57.895 0.00 0.00 0.00 4.40
312 313 1.624865 GCTTCTCTCTGTGCGTGCTG 61.625 60.000 0.00 0.00 0.00 4.41
313 314 0.038801 CTTCTCTCTGTGCGTGCTGA 60.039 55.000 0.00 0.00 0.00 4.26
314 315 0.389025 TTCTCTCTGTGCGTGCTGAA 59.611 50.000 0.00 0.00 0.00 3.02
315 316 0.038801 TCTCTCTGTGCGTGCTGAAG 60.039 55.000 0.00 0.00 0.00 3.02
316 317 1.005748 TCTCTGTGCGTGCTGAAGG 60.006 57.895 0.00 0.00 0.00 3.46
317 318 2.666190 TCTGTGCGTGCTGAAGGC 60.666 61.111 0.00 0.00 40.19 4.35
328 329 2.355010 GCTGAAGGCAGGGATAATGT 57.645 50.000 0.00 0.00 42.53 2.71
329 330 3.492102 GCTGAAGGCAGGGATAATGTA 57.508 47.619 0.00 0.00 42.53 2.29
330 331 3.820557 GCTGAAGGCAGGGATAATGTAA 58.179 45.455 0.00 0.00 42.53 2.41
331 332 3.817647 GCTGAAGGCAGGGATAATGTAAG 59.182 47.826 0.00 0.00 42.53 2.34
332 333 4.444876 GCTGAAGGCAGGGATAATGTAAGA 60.445 45.833 0.00 0.00 42.53 2.10
333 334 5.684704 CTGAAGGCAGGGATAATGTAAGAA 58.315 41.667 0.00 0.00 38.51 2.52
334 335 6.073447 TGAAGGCAGGGATAATGTAAGAAA 57.927 37.500 0.00 0.00 0.00 2.52
335 336 6.489603 TGAAGGCAGGGATAATGTAAGAAAA 58.510 36.000 0.00 0.00 0.00 2.29
336 337 6.951198 TGAAGGCAGGGATAATGTAAGAAAAA 59.049 34.615 0.00 0.00 0.00 1.94
337 338 7.122650 TGAAGGCAGGGATAATGTAAGAAAAAG 59.877 37.037 0.00 0.00 0.00 2.27
338 339 5.893824 AGGCAGGGATAATGTAAGAAAAAGG 59.106 40.000 0.00 0.00 0.00 3.11
339 340 5.656859 GGCAGGGATAATGTAAGAAAAAGGT 59.343 40.000 0.00 0.00 0.00 3.50
340 341 6.831868 GGCAGGGATAATGTAAGAAAAAGGTA 59.168 38.462 0.00 0.00 0.00 3.08
341 342 7.013369 GGCAGGGATAATGTAAGAAAAAGGTAG 59.987 40.741 0.00 0.00 0.00 3.18
342 343 7.773690 GCAGGGATAATGTAAGAAAAAGGTAGA 59.226 37.037 0.00 0.00 0.00 2.59
343 344 9.681062 CAGGGATAATGTAAGAAAAAGGTAGAA 57.319 33.333 0.00 0.00 0.00 2.10
344 345 9.907229 AGGGATAATGTAAGAAAAAGGTAGAAG 57.093 33.333 0.00 0.00 0.00 2.85
345 346 9.901172 GGGATAATGTAAGAAAAAGGTAGAAGA 57.099 33.333 0.00 0.00 0.00 2.87
350 351 6.465084 TGTAAGAAAAAGGTAGAAGAGGAGC 58.535 40.000 0.00 0.00 0.00 4.70
351 352 5.834281 AAGAAAAAGGTAGAAGAGGAGCT 57.166 39.130 0.00 0.00 0.00 4.09
352 353 5.159273 AGAAAAAGGTAGAAGAGGAGCTG 57.841 43.478 0.00 0.00 0.00 4.24
353 354 3.342377 AAAAGGTAGAAGAGGAGCTGC 57.658 47.619 0.00 0.00 0.00 5.25
354 355 0.820871 AAGGTAGAAGAGGAGCTGCG 59.179 55.000 0.00 0.00 0.00 5.18
355 356 0.033991 AGGTAGAAGAGGAGCTGCGA 60.034 55.000 0.00 0.00 0.00 5.10
356 357 1.036707 GGTAGAAGAGGAGCTGCGAT 58.963 55.000 0.00 0.00 0.00 4.58
357 358 1.000717 GGTAGAAGAGGAGCTGCGATC 60.001 57.143 0.00 0.00 0.00 3.69
358 359 1.953686 GTAGAAGAGGAGCTGCGATCT 59.046 52.381 13.18 13.18 0.00 2.75
359 360 0.746063 AGAAGAGGAGCTGCGATCTG 59.254 55.000 9.07 0.00 0.00 2.90
360 361 0.743688 GAAGAGGAGCTGCGATCTGA 59.256 55.000 0.00 0.00 0.00 3.27
361 362 0.459489 AAGAGGAGCTGCGATCTGAC 59.541 55.000 0.00 0.00 0.00 3.51
362 363 1.299014 GAGGAGCTGCGATCTGACG 60.299 63.158 0.00 0.00 0.00 4.35
363 364 2.279120 GGAGCTGCGATCTGACGG 60.279 66.667 0.00 0.00 0.00 4.79
364 365 2.492090 GAGCTGCGATCTGACGGT 59.508 61.111 0.00 0.00 0.00 4.83
365 366 1.587613 GAGCTGCGATCTGACGGTC 60.588 63.158 0.00 0.00 0.00 4.79
366 367 1.999071 GAGCTGCGATCTGACGGTCT 61.999 60.000 9.88 0.00 0.00 3.85
367 368 1.587613 GCTGCGATCTGACGGTCTC 60.588 63.158 9.88 0.00 0.00 3.36
368 369 1.297967 CTGCGATCTGACGGTCTCG 60.298 63.158 9.88 11.28 43.02 4.04
370 371 2.351322 CGATCTGACGGTCTCGCG 60.351 66.667 9.88 0.00 40.63 5.87
371 372 2.652496 GATCTGACGGTCTCGCGC 60.652 66.667 9.88 0.00 40.63 6.86
372 373 4.538283 ATCTGACGGTCTCGCGCG 62.538 66.667 26.76 26.76 40.63 6.86
391 392 4.559063 CCAGATCGGGCAGCTGGG 62.559 72.222 17.12 0.93 44.24 4.45
392 393 4.559063 CAGATCGGGCAGCTGGGG 62.559 72.222 17.12 0.00 0.00 4.96
393 394 4.804420 AGATCGGGCAGCTGGGGA 62.804 66.667 17.12 0.00 0.00 4.81
394 395 3.564218 GATCGGGCAGCTGGGGAT 61.564 66.667 17.12 0.00 0.00 3.85
395 396 2.122413 ATCGGGCAGCTGGGGATA 60.122 61.111 17.12 0.00 0.00 2.59
396 397 2.177594 GATCGGGCAGCTGGGGATAG 62.178 65.000 17.12 0.00 0.00 2.08
397 398 2.679619 ATCGGGCAGCTGGGGATAGA 62.680 60.000 17.12 0.00 0.00 1.98
398 399 2.832498 GGGCAGCTGGGGATAGAC 59.168 66.667 17.12 0.00 0.00 2.59
399 400 2.823758 GGGCAGCTGGGGATAGACC 61.824 68.421 17.12 4.96 38.08 3.85
400 401 2.423446 GCAGCTGGGGATAGACCG 59.577 66.667 17.12 0.00 40.11 4.79
401 402 3.142393 CAGCTGGGGATAGACCGG 58.858 66.667 5.57 0.00 40.11 5.28
404 405 3.616721 CTGGGGATAGACCGGCCG 61.617 72.222 21.04 21.04 40.11 6.13
405 406 4.146156 TGGGGATAGACCGGCCGA 62.146 66.667 30.73 6.75 40.11 5.54
406 407 2.841044 GGGGATAGACCGGCCGAA 60.841 66.667 30.73 9.55 40.11 4.30
407 408 2.437396 GGGGATAGACCGGCCGAAA 61.437 63.158 30.73 9.13 40.11 3.46
408 409 1.227468 GGGATAGACCGGCCGAAAC 60.227 63.158 30.73 17.17 40.11 2.78
409 410 1.683418 GGGATAGACCGGCCGAAACT 61.683 60.000 30.73 23.23 40.11 2.66
410 411 0.177373 GGATAGACCGGCCGAAACTT 59.823 55.000 30.73 8.32 0.00 2.66
411 412 1.406477 GGATAGACCGGCCGAAACTTT 60.406 52.381 30.73 16.74 0.00 2.66
412 413 1.931841 GATAGACCGGCCGAAACTTTC 59.068 52.381 30.73 20.67 0.00 2.62
421 422 2.126850 GAAACTTTCGGCCAGCGC 60.127 61.111 2.24 0.00 0.00 5.92
422 423 2.903547 GAAACTTTCGGCCAGCGCA 61.904 57.895 11.47 0.00 36.38 6.09
423 424 3.194272 AAACTTTCGGCCAGCGCAC 62.194 57.895 11.47 0.00 36.38 5.34
453 454 1.787012 GTGCTGGCCACTTTGAAATG 58.213 50.000 0.00 0.00 41.35 2.32
454 455 0.680618 TGCTGGCCACTTTGAAATGG 59.319 50.000 0.00 0.00 39.16 3.16
455 456 0.037046 GCTGGCCACTTTGAAATGGG 60.037 55.000 0.00 0.00 36.41 4.00
456 457 1.341080 CTGGCCACTTTGAAATGGGT 58.659 50.000 0.00 0.00 36.41 4.51
457 458 1.001181 CTGGCCACTTTGAAATGGGTG 59.999 52.381 0.00 0.20 36.41 4.61
458 459 1.337118 GGCCACTTTGAAATGGGTGA 58.663 50.000 0.00 0.00 36.41 4.02
459 460 1.691434 GGCCACTTTGAAATGGGTGAA 59.309 47.619 0.00 0.00 36.41 3.18
460 461 2.547855 GGCCACTTTGAAATGGGTGAAC 60.548 50.000 0.00 0.00 36.41 3.18
461 462 2.102252 GCCACTTTGAAATGGGTGAACA 59.898 45.455 7.96 0.00 36.41 3.18
462 463 3.431486 GCCACTTTGAAATGGGTGAACAA 60.431 43.478 7.96 0.00 36.41 2.83
463 464 4.743348 GCCACTTTGAAATGGGTGAACAAT 60.743 41.667 7.96 0.00 36.41 2.71
464 465 5.367302 CCACTTTGAAATGGGTGAACAATT 58.633 37.500 0.00 0.00 31.83 2.32
465 466 6.520272 CCACTTTGAAATGGGTGAACAATTA 58.480 36.000 0.00 0.00 31.83 1.40
466 467 6.423604 CCACTTTGAAATGGGTGAACAATTAC 59.576 38.462 0.00 0.00 31.83 1.89
467 468 6.423604 CACTTTGAAATGGGTGAACAATTACC 59.576 38.462 0.00 0.00 36.21 2.85
477 478 6.687081 GGTGAACAATTACCCAATCGATAA 57.313 37.500 0.00 0.00 0.00 1.75
478 479 6.492254 GGTGAACAATTACCCAATCGATAAC 58.508 40.000 0.00 0.00 0.00 1.89
479 480 6.094325 GGTGAACAATTACCCAATCGATAACA 59.906 38.462 0.00 0.00 0.00 2.41
480 481 7.362229 GGTGAACAATTACCCAATCGATAACAA 60.362 37.037 0.00 0.00 0.00 2.83
481 482 8.188139 GTGAACAATTACCCAATCGATAACAAT 58.812 33.333 0.00 0.00 0.00 2.71
482 483 8.402472 TGAACAATTACCCAATCGATAACAATC 58.598 33.333 0.00 0.00 0.00 2.67
483 484 7.272037 ACAATTACCCAATCGATAACAATCC 57.728 36.000 0.00 0.00 0.00 3.01
484 485 6.264518 ACAATTACCCAATCGATAACAATCCC 59.735 38.462 0.00 0.00 0.00 3.85
485 486 5.640158 TTACCCAATCGATAACAATCCCT 57.360 39.130 0.00 0.00 0.00 4.20
486 487 6.750660 TTACCCAATCGATAACAATCCCTA 57.249 37.500 0.00 0.00 0.00 3.53
487 488 5.640158 ACCCAATCGATAACAATCCCTAA 57.360 39.130 0.00 0.00 0.00 2.69
488 489 6.008696 ACCCAATCGATAACAATCCCTAAA 57.991 37.500 0.00 0.00 0.00 1.85
489 490 5.826208 ACCCAATCGATAACAATCCCTAAAC 59.174 40.000 0.00 0.00 0.00 2.01
490 491 5.240844 CCCAATCGATAACAATCCCTAAACC 59.759 44.000 0.00 0.00 0.00 3.27
491 492 5.240844 CCAATCGATAACAATCCCTAAACCC 59.759 44.000 0.00 0.00 0.00 4.11
492 493 4.426736 TCGATAACAATCCCTAAACCCC 57.573 45.455 0.00 0.00 0.00 4.95
493 494 3.136992 TCGATAACAATCCCTAAACCCCC 59.863 47.826 0.00 0.00 0.00 5.40
494 495 3.483421 GATAACAATCCCTAAACCCCCG 58.517 50.000 0.00 0.00 0.00 5.73
495 496 0.323999 AACAATCCCTAAACCCCCGC 60.324 55.000 0.00 0.00 0.00 6.13
496 497 1.455032 CAATCCCTAAACCCCCGCC 60.455 63.158 0.00 0.00 0.00 6.13
497 498 1.621514 AATCCCTAAACCCCCGCCT 60.622 57.895 0.00 0.00 0.00 5.52
498 499 1.642513 AATCCCTAAACCCCCGCCTC 61.643 60.000 0.00 0.00 0.00 4.70
499 500 2.562973 ATCCCTAAACCCCCGCCTCT 62.563 60.000 0.00 0.00 0.00 3.69
500 501 2.743179 CCCTAAACCCCCGCCTCTC 61.743 68.421 0.00 0.00 0.00 3.20
501 502 2.499685 CTAAACCCCCGCCTCTCG 59.500 66.667 0.00 0.00 38.08 4.04
502 503 3.735037 CTAAACCCCCGCCTCTCGC 62.735 68.421 0.00 0.00 36.73 5.03
508 509 4.214327 CCCGCCTCTCGCCTTCTC 62.214 72.222 0.00 0.00 36.73 2.87
509 510 4.214327 CCGCCTCTCGCCTTCTCC 62.214 72.222 0.00 0.00 36.73 3.71
510 511 4.214327 CGCCTCTCGCCTTCTCCC 62.214 72.222 0.00 0.00 0.00 4.30
511 512 3.855853 GCCTCTCGCCTTCTCCCC 61.856 72.222 0.00 0.00 0.00 4.81
512 513 2.042435 CCTCTCGCCTTCTCCCCT 60.042 66.667 0.00 0.00 0.00 4.79
513 514 1.687493 CCTCTCGCCTTCTCCCCTT 60.687 63.158 0.00 0.00 0.00 3.95
514 515 1.681486 CCTCTCGCCTTCTCCCCTTC 61.681 65.000 0.00 0.00 0.00 3.46
515 516 1.681486 CTCTCGCCTTCTCCCCTTCC 61.681 65.000 0.00 0.00 0.00 3.46
516 517 2.687566 TCGCCTTCTCCCCTTCCC 60.688 66.667 0.00 0.00 0.00 3.97
517 518 3.798511 CGCCTTCTCCCCTTCCCC 61.799 72.222 0.00 0.00 0.00 4.81
518 519 2.286502 GCCTTCTCCCCTTCCCCT 60.287 66.667 0.00 0.00 0.00 4.79
519 520 2.379459 GCCTTCTCCCCTTCCCCTC 61.379 68.421 0.00 0.00 0.00 4.30
520 521 2.066999 CCTTCTCCCCTTCCCCTCG 61.067 68.421 0.00 0.00 0.00 4.63
521 522 1.001760 CTTCTCCCCTTCCCCTCGA 59.998 63.158 0.00 0.00 0.00 4.04
539 540 0.603569 GACTCACCTTCTTCCTCGCA 59.396 55.000 0.00 0.00 0.00 5.10
545 546 0.248843 CCTTCTTCCTCGCAAGCTCT 59.751 55.000 0.00 0.00 37.18 4.09
546 547 1.357907 CTTCTTCCTCGCAAGCTCTG 58.642 55.000 0.00 0.00 37.18 3.35
582 583 2.046217 GCCGGAGACCCAAACCTC 60.046 66.667 5.05 0.00 0.00 3.85
585 586 1.597461 CGGAGACCCAAACCTCCTC 59.403 63.158 0.00 0.00 45.16 3.71
586 587 1.900545 CGGAGACCCAAACCTCCTCC 61.901 65.000 0.00 0.00 45.16 4.30
596 597 4.410400 CCTCCTCCCAACGCCCAC 62.410 72.222 0.00 0.00 0.00 4.61
602 603 4.278513 CCCAACGCCCACCCTGAA 62.279 66.667 0.00 0.00 0.00 3.02
603 604 2.983592 CCAACGCCCACCCTGAAC 60.984 66.667 0.00 0.00 0.00 3.18
604 605 2.983592 CAACGCCCACCCTGAACC 60.984 66.667 0.00 0.00 0.00 3.62
609 610 4.278513 CCCACCCTGAACCGCCAA 62.279 66.667 0.00 0.00 0.00 4.52
641 642 2.032860 AATCGATCCACTCCGCTGGG 62.033 60.000 0.00 0.00 31.41 4.45
686 687 3.072468 CGAGTCCGGGCCAACCTA 61.072 66.667 0.08 0.00 36.97 3.08
828 840 2.100631 CGCCAACCACAGATCCGTC 61.101 63.158 0.00 0.00 0.00 4.79
831 843 1.156736 CCAACCACAGATCCGTCAAC 58.843 55.000 0.00 0.00 0.00 3.18
924 936 3.164269 CTCCCATGGCCGCCTACT 61.164 66.667 11.61 0.00 0.00 2.57
927 939 2.589540 CCATGGCCGCCTACTGAA 59.410 61.111 11.61 0.00 0.00 3.02
928 940 1.149174 CCATGGCCGCCTACTGAAT 59.851 57.895 11.61 0.00 0.00 2.57
929 941 0.886490 CCATGGCCGCCTACTGAATC 60.886 60.000 11.61 0.00 0.00 2.52
930 942 0.886490 CATGGCCGCCTACTGAATCC 60.886 60.000 11.61 0.00 0.00 3.01
1003 1018 1.410737 CGCGAAGGTGTACGTCATGG 61.411 60.000 0.00 0.00 0.00 3.66
1025 1040 2.730404 CGCATATAGAAGCTGCTGTCAG 59.270 50.000 3.74 0.00 43.16 3.51
1043 1058 1.598130 GCAGGAAGCAACGTCACCT 60.598 57.895 0.00 0.00 44.79 4.00
1065 1080 1.670811 CGGAGCGATTTGTTGCCTAAT 59.329 47.619 0.00 0.00 0.00 1.73
1110 1125 2.429610 GGTTAACTGGGCGACTCTGATA 59.570 50.000 5.42 0.00 0.00 2.15
1116 1131 0.753262 GGGCGACTCTGATATGGTGT 59.247 55.000 0.00 0.00 0.00 4.16
1238 1253 2.348998 CCTCTTCCAGTTGCCGCT 59.651 61.111 0.00 0.00 0.00 5.52
1272 1287 4.688419 CGCGCCCAACAGCAACAG 62.688 66.667 0.00 0.00 0.00 3.16
1274 1289 4.347453 CGCCCAACAGCAACAGGC 62.347 66.667 0.00 0.00 45.30 4.85
1283 1298 3.846754 GCAACAGGCAATTCGCAC 58.153 55.556 0.00 0.00 45.17 5.34
1284 1299 1.734117 GCAACAGGCAATTCGCACC 60.734 57.895 0.00 0.00 45.17 5.01
1285 1300 1.659233 CAACAGGCAATTCGCACCA 59.341 52.632 0.00 0.00 45.17 4.17
1314 1329 1.594862 GCTTCCGATGAGATCCAAACG 59.405 52.381 0.00 0.00 0.00 3.60
1353 1368 5.164620 TGCTCAAGATACATCAGGTTGAA 57.835 39.130 0.00 0.00 0.00 2.69
1364 1379 4.042062 ACATCAGGTTGAAGTGAGATCCAA 59.958 41.667 0.00 0.00 26.00 3.53
1407 1422 4.514577 ATCGACGCCGCCTCCAAG 62.515 66.667 0.00 0.00 35.37 3.61
1422 1437 2.586079 AAGGCCATCGATGCGACG 60.586 61.111 20.25 7.43 39.18 5.12
1439 1454 3.163594 CGACGTCCAAGAAATTTGATGC 58.836 45.455 10.58 0.00 0.00 3.91
1474 1489 0.307146 GGATGCGAGATCAAAGCAGC 59.693 55.000 14.19 14.19 44.55 5.25
1497 1512 2.359230 GCAAGGTCGGAGCAGCTT 60.359 61.111 10.15 0.00 34.35 3.74
1527 1542 3.030291 ACCTGAACCAAACATTGAGCAA 58.970 40.909 0.00 0.00 0.00 3.91
1556 1571 4.299547 TCACGCGCTCAAGCAGGT 62.300 61.111 5.73 0.00 42.21 4.00
1599 1614 4.474226 AAGAAACGATGACTTGCAAGAC 57.526 40.909 32.50 25.93 0.00 3.01
1602 1617 0.319900 ACGATGACTTGCAAGACGCT 60.320 50.000 32.50 17.15 43.06 5.07
1718 1837 4.156739 TGGCGTGTATGCATTTTGATACAA 59.843 37.500 3.54 0.00 36.93 2.41
1800 1919 3.736252 CCTCGGATAAGTCTACAAATGCG 59.264 47.826 3.38 3.38 34.92 4.73
1802 1921 2.097396 CGGATAAGTCTACAAATGCGCG 60.097 50.000 0.00 0.00 0.00 6.86
2003 2125 3.881688 GAGACGGTATGTAGGCTGTAGAA 59.118 47.826 0.00 0.00 0.00 2.10
2028 2150 5.599999 TCTCAGCTACCATTCCTAGTTTC 57.400 43.478 0.00 0.00 0.00 2.78
2048 2170 7.919151 AGTTTCCTAGCTTTGGTAGTTTCTAT 58.081 34.615 0.00 0.00 32.45 1.98
2073 2195 8.918202 TTTTGTAACCTTGAGTCATCTGTAAT 57.082 30.769 0.00 0.00 0.00 1.89
2078 2200 9.431887 GTAACCTTGAGTCATCTGTAATACAAA 57.568 33.333 0.00 0.00 0.00 2.83
2079 2201 8.918202 AACCTTGAGTCATCTGTAATACAAAA 57.082 30.769 0.00 0.00 0.00 2.44
2080 2202 9.520515 AACCTTGAGTCATCTGTAATACAAAAT 57.479 29.630 0.00 0.00 0.00 1.82
2110 2232 7.052248 TCTGATCAATTCTGCACATTACATCT 58.948 34.615 0.00 0.00 0.00 2.90
2113 2235 8.996271 TGATCAATTCTGCACATTACATCTATC 58.004 33.333 0.00 0.00 0.00 2.08
2114 2236 8.913487 ATCAATTCTGCACATTACATCTATCA 57.087 30.769 0.00 0.00 0.00 2.15
2115 2237 8.913487 TCAATTCTGCACATTACATCTATCAT 57.087 30.769 0.00 0.00 0.00 2.45
2116 2238 9.346005 TCAATTCTGCACATTACATCTATCATT 57.654 29.630 0.00 0.00 0.00 2.57
2158 2280 9.651913 TTGCAAACAGTTTCTTTCTTTTTATCT 57.348 25.926 0.00 0.00 0.00 1.98
2256 2378 6.377146 ACACCAAGCTTCAGAAGTTAAAAGAA 59.623 34.615 11.94 0.00 0.00 2.52
2266 2388 6.428159 TCAGAAGTTAAAAGAAGAGCATGGTC 59.572 38.462 17.19 17.19 0.00 4.02
2272 2394 7.285401 AGTTAAAAGAAGAGCATGGTCAAGAAA 59.715 33.333 25.71 8.41 0.00 2.52
2323 2445 1.101331 GATCAACGAGTACGACCCCT 58.899 55.000 0.00 0.00 42.66 4.79
2326 2448 1.605738 AACGAGTACGACCCCTGCT 60.606 57.895 0.00 0.00 42.66 4.24
2370 2492 1.974957 TGGAACAAGAAGGATGGTCGA 59.025 47.619 0.00 0.00 35.30 4.20
2459 2581 4.693283 TGAGCCCACTTACGATTTATCTG 58.307 43.478 0.00 0.00 0.00 2.90
2492 2614 1.273048 CTGCTGCTTTTGGTTGCCATA 59.727 47.619 0.00 0.00 31.53 2.74
2494 2616 2.103771 TGCTGCTTTTGGTTGCCATAAA 59.896 40.909 0.00 0.00 31.53 1.40
2502 2624 6.183360 GCTTTTGGTTGCCATAAAACTATTCG 60.183 38.462 0.00 0.00 31.53 3.34
2531 2653 9.653287 CCTTGAACTTTAGACATAGTGTAATCA 57.347 33.333 0.00 0.00 0.00 2.57
2551 2673 5.073311 TCATAGTGCTAGTGGACTGTTTC 57.927 43.478 0.57 0.00 44.61 2.78
2552 2674 4.526650 TCATAGTGCTAGTGGACTGTTTCA 59.473 41.667 0.57 0.00 44.61 2.69
2561 2683 4.899502 AGTGGACTGTTTCAAGGTATCAG 58.100 43.478 0.00 0.00 0.00 2.90
2562 2684 3.437049 GTGGACTGTTTCAAGGTATCAGC 59.563 47.826 0.00 0.00 0.00 4.26
2621 2744 2.483583 AAGTCGATCGAGCTTAGCTG 57.516 50.000 20.09 4.31 39.88 4.24
2629 2752 2.906354 TCGAGCTTAGCTGGATTTTCC 58.094 47.619 13.01 0.00 38.40 3.13
2631 2754 3.704566 TCGAGCTTAGCTGGATTTTCCTA 59.295 43.478 13.01 0.00 38.40 2.94
2634 2757 5.049818 CGAGCTTAGCTGGATTTTCCTATTG 60.050 44.000 13.01 0.00 39.88 1.90
2638 2761 6.293680 GCTTAGCTGGATTTTCCTATTGTAGC 60.294 42.308 0.00 0.00 37.46 3.58
2642 2765 5.504173 GCTGGATTTTCCTATTGTAGCGTTC 60.504 44.000 0.00 0.00 37.46 3.95
2648 2779 1.526887 CCTATTGTAGCGTTCGCATGG 59.473 52.381 18.95 5.91 0.00 3.66
2683 2814 9.247861 ACTAATCTAAAATGTTGATTTGCTCCT 57.752 29.630 0.00 0.00 31.83 3.69
2684 2815 9.727627 CTAATCTAAAATGTTGATTTGCTCCTC 57.272 33.333 0.00 0.00 31.83 3.71
2701 2832 5.591472 TGCTCCTCATCTTTTGTGAATATGG 59.409 40.000 0.00 0.00 0.00 2.74
2712 2843 2.017049 GTGAATATGGTGTGTGCCCTC 58.983 52.381 0.00 0.00 0.00 4.30
2720 2851 2.217038 TGTGTGCCCTCAGGACCTC 61.217 63.158 0.00 0.00 33.47 3.85
2749 2880 0.541392 TGCTTCTGTCCTGTGTGTGT 59.459 50.000 0.00 0.00 0.00 3.72
2750 2881 0.940126 GCTTCTGTCCTGTGTGTGTG 59.060 55.000 0.00 0.00 0.00 3.82
2751 2882 0.940126 CTTCTGTCCTGTGTGTGTGC 59.060 55.000 0.00 0.00 0.00 4.57
2780 2911 5.855045 TCTTGGTAAGAAAGTTCCTCTGTC 58.145 41.667 0.00 0.00 33.83 3.51
2784 2915 4.991687 GGTAAGAAAGTTCCTCTGTCACTG 59.008 45.833 0.00 0.00 33.01 3.66
2797 2928 5.428184 TCTGTCACTGAGAGAGAGATACA 57.572 43.478 2.75 0.00 41.32 2.29
2815 2946 0.325933 CAACTGCCTCATGGACCTGA 59.674 55.000 0.00 0.00 34.57 3.86
2816 2947 0.617413 AACTGCCTCATGGACCTGAG 59.383 55.000 11.82 11.82 41.93 3.35
2828 2959 4.160642 TGGACCTGAGAATTGATCATGG 57.839 45.455 0.00 0.00 0.00 3.66
2846 2983 3.758755 TGGATAAGCAGCAGGACATAG 57.241 47.619 0.00 0.00 0.00 2.23
2886 3036 7.147949 CCTGTGGCAAGAATTTTTAGATGATCT 60.148 37.037 0.00 0.00 0.00 2.75
2913 3063 8.271487 GCAAGAAATAATGCTGCTTAATTTAGC 58.729 33.333 9.49 9.49 41.59 3.09
2919 3069 1.401905 GCTGCTTAATTTAGCACCGCT 59.598 47.619 14.82 0.00 45.72 5.52
2920 3070 2.612212 GCTGCTTAATTTAGCACCGCTA 59.388 45.455 14.82 0.00 45.72 4.26
2946 3096 0.438830 GTAAGCTTTCCACGTGCTCG 59.561 55.000 10.91 6.63 43.34 5.03
2950 3100 1.289109 GCTTTCCACGTGCTCGCTTA 61.289 55.000 10.91 0.00 41.18 3.09
3004 3155 5.778161 TCTGTTTTGTGTACATATGCTCG 57.222 39.130 1.58 0.00 0.00 5.03
3014 3165 9.976255 TTGTGTACATATGCTCGTTTTATTTAC 57.024 29.630 1.58 0.00 0.00 2.01
3015 3166 9.373603 TGTGTACATATGCTCGTTTTATTTACT 57.626 29.630 1.58 0.00 0.00 2.24
3021 3172 9.779237 CATATGCTCGTTTTATTTACTTACTCG 57.221 33.333 0.00 0.00 0.00 4.18
3027 3178 5.349543 CGTTTTATTTACTTACTCGGCTGGT 59.650 40.000 0.00 0.00 0.00 4.00
3030 3181 2.754946 TTACTTACTCGGCTGGTTGG 57.245 50.000 0.00 0.00 0.00 3.77
3036 3188 3.476031 CTCGGCTGGTTGGGTGTGT 62.476 63.158 0.00 0.00 0.00 3.72
3042 3194 1.607148 GCTGGTTGGGTGTGTTACTTC 59.393 52.381 0.00 0.00 0.00 3.01
3069 3221 5.407387 GCAAGTGATTTCATTGCTTTGATGT 59.593 36.000 14.78 0.00 44.57 3.06
3072 3224 8.430063 CAAGTGATTTCATTGCTTTGATGTAAC 58.570 33.333 0.00 0.00 0.00 2.50
3073 3225 7.660112 AGTGATTTCATTGCTTTGATGTAACA 58.340 30.769 0.00 0.00 0.00 2.41
3083 3360 6.065374 TGCTTTGATGTAACAGGGAAAGTAA 58.935 36.000 0.00 0.00 0.00 2.24
3098 3375 2.381725 AGTAAACTTCCGTAGCTGCC 57.618 50.000 0.00 0.00 0.00 4.85
3099 3376 1.066358 AGTAAACTTCCGTAGCTGCCC 60.066 52.381 0.00 0.00 0.00 5.36
3100 3377 1.066358 GTAAACTTCCGTAGCTGCCCT 60.066 52.381 0.00 0.00 0.00 5.19
3101 3378 0.400594 AAACTTCCGTAGCTGCCCTT 59.599 50.000 0.00 0.00 0.00 3.95
3107 3384 1.078848 CGTAGCTGCCCTTCTGCTT 60.079 57.895 0.00 0.00 46.06 3.91
3117 3394 4.836825 TGCCCTTCTGCTTGCTATATATC 58.163 43.478 0.00 0.00 0.00 1.63
3118 3395 4.286808 TGCCCTTCTGCTTGCTATATATCA 59.713 41.667 0.00 0.00 0.00 2.15
3119 3396 5.221904 TGCCCTTCTGCTTGCTATATATCAA 60.222 40.000 0.00 0.00 0.00 2.57
3120 3397 5.123027 GCCCTTCTGCTTGCTATATATCAAC 59.877 44.000 0.00 0.00 0.00 3.18
3122 3399 6.593382 CCCTTCTGCTTGCTATATATCAACTC 59.407 42.308 0.00 0.00 0.00 3.01
3157 3436 1.480137 CAAAGGTTTGAGTTGGTGGCA 59.520 47.619 0.00 0.00 40.55 4.92
3170 3449 2.257353 GTGGCATCACCTGTTCACC 58.743 57.895 0.00 0.00 40.22 4.02
3175 3454 1.819305 GCATCACCTGTTCACCACCTT 60.819 52.381 0.00 0.00 0.00 3.50
3178 3457 2.650322 TCACCTGTTCACCACCTTTTC 58.350 47.619 0.00 0.00 0.00 2.29
3191 3473 2.223144 CACCTTTTCGTTCTCGCAATGA 59.777 45.455 0.00 0.00 36.96 2.57
3198 3480 4.577687 TCGTTCTCGCAATGAAATGTAC 57.422 40.909 0.00 0.00 36.96 2.90
3202 3484 2.935849 TCTCGCAATGAAATGTACGCAT 59.064 40.909 0.00 0.00 36.80 4.73
3244 3526 5.127031 GCCCTCCAGCTGTATCAAATAAAAA 59.873 40.000 13.81 0.00 0.00 1.94
3277 3559 1.670811 CGCGGATTGGCTTCAAATAGT 59.329 47.619 0.00 0.00 33.67 2.12
3288 3570 6.696411 TGGCTTCAAATAGTTGGTATTTTGG 58.304 36.000 2.65 0.00 39.00 3.28
3313 3595 5.334414 GCTGTGTTTATGTGTTCTGGAGAAG 60.334 44.000 0.00 0.00 34.27 2.85
3322 3604 4.082190 TGTGTTCTGGAGAAGTAGGATTCG 60.082 45.833 0.00 0.00 34.27 3.34
3331 3613 7.617225 TGGAGAAGTAGGATTCGTAATTCAAA 58.383 34.615 21.53 9.22 33.31 2.69
3333 3615 8.552034 GGAGAAGTAGGATTCGTAATTCAAATG 58.448 37.037 21.53 0.00 33.31 2.32
3342 3624 7.751793 GGATTCGTAATTCAAATGTTTTACGGT 59.248 33.333 19.83 13.75 44.16 4.83
3343 3625 7.839438 TTCGTAATTCAAATGTTTTACGGTG 57.161 32.000 19.83 4.53 44.16 4.94
3346 3628 5.898630 AATTCAAATGTTTTACGGTGTGC 57.101 34.783 0.00 0.00 0.00 4.57
3351 3633 5.938710 TCAAATGTTTTACGGTGTGCCTATA 59.061 36.000 0.00 0.00 0.00 1.31
3399 3681 1.001974 TGCGATAAGGTGTCACTGCTT 59.998 47.619 2.35 1.53 0.00 3.91
3404 3686 0.740737 AAGGTGTCACTGCTTTGTGC 59.259 50.000 2.35 0.00 43.25 4.57
3435 3717 5.712152 AATCTTGAATATTCCATTCCGGC 57.288 39.130 12.90 0.00 33.14 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.084370 CCACGGCTTTCCATCTCGTC 61.084 60.000 0.00 0.00 31.35 4.20
1 2 1.079127 CCACGGCTTTCCATCTCGT 60.079 57.895 0.00 0.00 34.19 4.18
2 3 2.464459 GCCACGGCTTTCCATCTCG 61.464 63.158 0.00 0.00 38.26 4.04
3 4 2.115291 GGCCACGGCTTTCCATCTC 61.115 63.158 8.20 0.00 41.60 2.75
4 5 2.044946 GGCCACGGCTTTCCATCT 60.045 61.111 8.20 0.00 41.60 2.90
5 6 1.754234 ATGGCCACGGCTTTCCATC 60.754 57.895 8.16 0.00 41.60 3.51
6 7 2.053865 CATGGCCACGGCTTTCCAT 61.054 57.895 8.16 0.00 39.72 3.41
7 8 2.676121 CATGGCCACGGCTTTCCA 60.676 61.111 8.16 0.00 41.60 3.53
8 9 3.451894 CCATGGCCACGGCTTTCC 61.452 66.667 8.16 0.00 41.60 3.13
9 10 2.361104 TCCATGGCCACGGCTTTC 60.361 61.111 14.62 0.00 41.60 2.62
10 11 2.361610 CTCCATGGCCACGGCTTT 60.362 61.111 14.62 0.00 41.60 3.51
11 12 3.628646 GACTCCATGGCCACGGCTT 62.629 63.158 14.62 0.89 41.60 4.35
12 13 4.101448 GACTCCATGGCCACGGCT 62.101 66.667 14.62 0.00 41.60 5.52
14 15 2.593468 AATCGACTCCATGGCCACGG 62.593 60.000 12.95 12.95 0.00 4.94
15 16 0.744414 AAATCGACTCCATGGCCACG 60.744 55.000 8.16 6.13 0.00 4.94
16 17 0.734889 CAAATCGACTCCATGGCCAC 59.265 55.000 8.16 0.00 0.00 5.01
17 18 1.031571 GCAAATCGACTCCATGGCCA 61.032 55.000 8.56 8.56 0.00 5.36
18 19 0.749454 AGCAAATCGACTCCATGGCC 60.749 55.000 6.96 0.00 0.00 5.36
19 20 0.379669 CAGCAAATCGACTCCATGGC 59.620 55.000 6.96 0.00 0.00 4.40
20 21 1.019673 CCAGCAAATCGACTCCATGG 58.980 55.000 4.97 4.97 0.00 3.66
21 22 1.019673 CCCAGCAAATCGACTCCATG 58.980 55.000 0.00 0.00 0.00 3.66
22 23 0.911769 TCCCAGCAAATCGACTCCAT 59.088 50.000 0.00 0.00 0.00 3.41
23 24 0.036388 GTCCCAGCAAATCGACTCCA 60.036 55.000 0.00 0.00 0.00 3.86
24 25 1.084370 CGTCCCAGCAAATCGACTCC 61.084 60.000 0.00 0.00 0.00 3.85
25 26 1.084370 CCGTCCCAGCAAATCGACTC 61.084 60.000 0.00 0.00 0.00 3.36
26 27 1.079127 CCGTCCCAGCAAATCGACT 60.079 57.895 0.00 0.00 0.00 4.18
27 28 2.106683 CCCGTCCCAGCAAATCGAC 61.107 63.158 0.00 0.00 0.00 4.20
28 29 2.267642 CCCGTCCCAGCAAATCGA 59.732 61.111 0.00 0.00 0.00 3.59
29 30 2.824041 CCCCGTCCCAGCAAATCG 60.824 66.667 0.00 0.00 0.00 3.34
30 31 2.440247 CCCCCGTCCCAGCAAATC 60.440 66.667 0.00 0.00 0.00 2.17
31 32 4.759205 GCCCCCGTCCCAGCAAAT 62.759 66.667 0.00 0.00 0.00 2.32
48 49 4.429212 TCCGCCATCACCGTCGTG 62.429 66.667 0.00 0.00 41.72 4.35
49 50 4.129737 CTCCGCCATCACCGTCGT 62.130 66.667 0.00 0.00 0.00 4.34
51 52 4.148825 AGCTCCGCCATCACCGTC 62.149 66.667 0.00 0.00 0.00 4.79
52 53 4.457496 CAGCTCCGCCATCACCGT 62.457 66.667 0.00 0.00 0.00 4.83
54 55 4.783621 TGCAGCTCCGCCATCACC 62.784 66.667 0.00 0.00 0.00 4.02
55 56 2.747460 TTGCAGCTCCGCCATCAC 60.747 61.111 0.00 0.00 0.00 3.06
56 57 2.747460 GTTGCAGCTCCGCCATCA 60.747 61.111 0.00 0.00 0.00 3.07
57 58 3.869272 CGTTGCAGCTCCGCCATC 61.869 66.667 0.00 0.00 0.00 3.51
58 59 4.393155 TCGTTGCAGCTCCGCCAT 62.393 61.111 0.00 0.00 0.00 4.40
64 65 3.782244 CAGCCGTCGTTGCAGCTC 61.782 66.667 0.00 0.00 31.93 4.09
67 68 3.716006 CACCAGCCGTCGTTGCAG 61.716 66.667 0.00 0.00 0.00 4.41
70 71 3.345808 CACCACCAGCCGTCGTTG 61.346 66.667 0.00 0.00 0.00 4.10
71 72 4.619227 CCACCACCAGCCGTCGTT 62.619 66.667 0.00 0.00 0.00 3.85
73 74 4.742201 CTCCACCACCAGCCGTCG 62.742 72.222 0.00 0.00 0.00 5.12
74 75 2.660064 ATCTCCACCACCAGCCGTC 61.660 63.158 0.00 0.00 0.00 4.79
75 76 2.607750 ATCTCCACCACCAGCCGT 60.608 61.111 0.00 0.00 0.00 5.68
76 77 2.124983 CATCTCCACCACCAGCCG 60.125 66.667 0.00 0.00 0.00 5.52
77 78 2.439156 GCATCTCCACCACCAGCC 60.439 66.667 0.00 0.00 0.00 4.85
78 79 2.821366 CGCATCTCCACCACCAGC 60.821 66.667 0.00 0.00 0.00 4.85
79 80 1.448540 GTCGCATCTCCACCACCAG 60.449 63.158 0.00 0.00 0.00 4.00
80 81 2.662596 GTCGCATCTCCACCACCA 59.337 61.111 0.00 0.00 0.00 4.17
81 82 2.509336 CGTCGCATCTCCACCACC 60.509 66.667 0.00 0.00 0.00 4.61
82 83 2.509336 CCGTCGCATCTCCACCAC 60.509 66.667 0.00 0.00 0.00 4.16
83 84 3.770040 CCCGTCGCATCTCCACCA 61.770 66.667 0.00 0.00 0.00 4.17
84 85 4.530857 CCCCGTCGCATCTCCACC 62.531 72.222 0.00 0.00 0.00 4.61
85 86 3.771160 ACCCCGTCGCATCTCCAC 61.771 66.667 0.00 0.00 0.00 4.02
86 87 3.770040 CACCCCGTCGCATCTCCA 61.770 66.667 0.00 0.00 0.00 3.86
127 128 4.115199 ATTGCAGCTCCCCCGACC 62.115 66.667 0.00 0.00 0.00 4.79
128 129 2.825836 CATTGCAGCTCCCCCGAC 60.826 66.667 0.00 0.00 0.00 4.79
129 130 4.113815 CCATTGCAGCTCCCCCGA 62.114 66.667 0.00 0.00 0.00 5.14
132 133 4.802051 TCGCCATTGCAGCTCCCC 62.802 66.667 0.00 0.00 37.32 4.81
133 134 3.512516 GTCGCCATTGCAGCTCCC 61.513 66.667 0.00 0.00 37.32 4.30
134 135 3.512516 GGTCGCCATTGCAGCTCC 61.513 66.667 0.00 0.00 37.32 4.70
135 136 2.437359 AGGTCGCCATTGCAGCTC 60.437 61.111 0.00 0.00 37.32 4.09
136 137 2.437359 GAGGTCGCCATTGCAGCT 60.437 61.111 0.00 0.00 37.32 4.24
137 138 2.747460 TGAGGTCGCCATTGCAGC 60.747 61.111 0.00 0.00 37.32 5.25
138 139 1.078918 TCTGAGGTCGCCATTGCAG 60.079 57.895 0.00 0.00 37.32 4.41
139 140 1.375908 GTCTGAGGTCGCCATTGCA 60.376 57.895 0.00 0.00 37.32 4.08
140 141 0.745845 ATGTCTGAGGTCGCCATTGC 60.746 55.000 0.00 0.00 0.00 3.56
141 142 1.012086 CATGTCTGAGGTCGCCATTG 58.988 55.000 0.00 0.00 0.00 2.82
142 143 0.904649 TCATGTCTGAGGTCGCCATT 59.095 50.000 0.00 0.00 0.00 3.16
143 144 0.176680 GTCATGTCTGAGGTCGCCAT 59.823 55.000 0.00 0.00 30.18 4.40
144 145 1.591703 GTCATGTCTGAGGTCGCCA 59.408 57.895 0.00 0.00 30.18 5.69
145 146 1.517257 CGTCATGTCTGAGGTCGCC 60.517 63.158 0.00 0.00 33.56 5.54
146 147 0.798771 GTCGTCATGTCTGAGGTCGC 60.799 60.000 0.00 0.00 38.23 5.19
147 148 0.179161 GGTCGTCATGTCTGAGGTCG 60.179 60.000 0.00 0.00 38.23 4.79
148 149 0.888619 TGGTCGTCATGTCTGAGGTC 59.111 55.000 0.00 0.00 38.23 3.85
149 150 0.603569 GTGGTCGTCATGTCTGAGGT 59.396 55.000 0.00 0.00 38.23 3.85
150 151 0.108615 GGTGGTCGTCATGTCTGAGG 60.109 60.000 0.00 0.00 38.37 3.86
151 152 0.891373 AGGTGGTCGTCATGTCTGAG 59.109 55.000 0.00 0.00 30.18 3.35
152 153 0.888619 GAGGTGGTCGTCATGTCTGA 59.111 55.000 0.00 0.00 0.00 3.27
153 154 0.456824 CGAGGTGGTCGTCATGTCTG 60.457 60.000 0.00 0.00 44.20 3.51
154 155 1.883732 CGAGGTGGTCGTCATGTCT 59.116 57.895 0.00 0.00 44.20 3.41
155 156 4.478195 CGAGGTGGTCGTCATGTC 57.522 61.111 0.00 0.00 44.20 3.06
163 164 3.756727 GTCGTCCCCGAGGTGGTC 61.757 72.222 0.00 0.00 45.26 4.02
166 167 4.112341 GTCGTCGTCCCCGAGGTG 62.112 72.222 4.96 0.00 45.26 4.00
174 175 4.353437 AGGTTGCCGTCGTCGTCC 62.353 66.667 0.71 0.00 35.01 4.79
175 176 2.804090 GAGGTTGCCGTCGTCGTC 60.804 66.667 0.71 0.00 35.01 4.20
176 177 4.695231 CGAGGTTGCCGTCGTCGT 62.695 66.667 0.71 0.00 42.42 4.34
254 255 4.210304 GATGCGCGACCACGAAGC 62.210 66.667 12.10 0.00 42.66 3.86
255 256 3.554692 GGATGCGCGACCACGAAG 61.555 66.667 12.10 0.00 42.66 3.79
256 257 3.657448 ATGGATGCGCGACCACGAA 62.657 57.895 23.68 5.40 42.66 3.85
257 258 4.141965 ATGGATGCGCGACCACGA 62.142 61.111 23.68 5.72 42.66 4.35
258 259 3.928769 CATGGATGCGCGACCACG 61.929 66.667 23.68 14.63 39.06 4.94
259 260 2.511373 TCATGGATGCGCGACCAC 60.511 61.111 23.68 4.19 39.06 4.16
260 261 2.511373 GTCATGGATGCGCGACCA 60.511 61.111 23.49 23.49 40.57 4.02
261 262 3.630148 CGTCATGGATGCGCGACC 61.630 66.667 12.10 14.40 0.00 4.79
262 263 3.630148 CCGTCATGGATGCGCGAC 61.630 66.667 12.10 0.88 42.00 5.19
268 269 3.860605 TCGGGGCCGTCATGGATG 61.861 66.667 0.00 0.00 42.00 3.51
269 270 3.861797 GTCGGGGCCGTCATGGAT 61.862 66.667 0.00 0.00 42.00 3.41
284 285 2.103340 GAGAGAAGCGAGCCCGTC 59.897 66.667 0.00 0.00 38.24 4.79
285 286 2.361865 AGAGAGAAGCGAGCCCGT 60.362 61.111 0.00 0.00 38.24 5.28
286 287 2.103934 CAGAGAGAAGCGAGCCCG 59.896 66.667 0.00 0.00 39.16 6.13
287 288 1.153667 CACAGAGAGAAGCGAGCCC 60.154 63.158 0.00 0.00 0.00 5.19
288 289 1.809209 GCACAGAGAGAAGCGAGCC 60.809 63.158 0.00 0.00 0.00 4.70
289 290 3.779345 GCACAGAGAGAAGCGAGC 58.221 61.111 0.00 0.00 0.00 5.03
293 294 1.373999 AGCACGCACAGAGAGAAGC 60.374 57.895 0.00 0.00 0.00 3.86
294 295 0.038801 TCAGCACGCACAGAGAGAAG 60.039 55.000 0.00 0.00 0.00 2.85
295 296 0.389025 TTCAGCACGCACAGAGAGAA 59.611 50.000 0.00 0.00 0.00 2.87
296 297 0.038801 CTTCAGCACGCACAGAGAGA 60.039 55.000 0.00 0.00 0.00 3.10
297 298 1.013005 CCTTCAGCACGCACAGAGAG 61.013 60.000 0.00 0.00 0.00 3.20
298 299 1.005748 CCTTCAGCACGCACAGAGA 60.006 57.895 0.00 0.00 0.00 3.10
299 300 2.675056 GCCTTCAGCACGCACAGAG 61.675 63.158 0.00 0.00 42.97 3.35
300 301 2.666190 GCCTTCAGCACGCACAGA 60.666 61.111 0.00 0.00 42.97 3.41
309 310 2.355010 ACATTATCCCTGCCTTCAGC 57.645 50.000 0.00 0.00 39.00 4.26
310 311 5.296151 TCTTACATTATCCCTGCCTTCAG 57.704 43.478 0.00 0.00 40.02 3.02
311 312 5.708736 TTCTTACATTATCCCTGCCTTCA 57.291 39.130 0.00 0.00 0.00 3.02
312 313 7.404671 TTTTTCTTACATTATCCCTGCCTTC 57.595 36.000 0.00 0.00 0.00 3.46
313 314 6.381133 CCTTTTTCTTACATTATCCCTGCCTT 59.619 38.462 0.00 0.00 0.00 4.35
314 315 5.893824 CCTTTTTCTTACATTATCCCTGCCT 59.106 40.000 0.00 0.00 0.00 4.75
315 316 5.656859 ACCTTTTTCTTACATTATCCCTGCC 59.343 40.000 0.00 0.00 0.00 4.85
316 317 6.775594 ACCTTTTTCTTACATTATCCCTGC 57.224 37.500 0.00 0.00 0.00 4.85
317 318 9.681062 TTCTACCTTTTTCTTACATTATCCCTG 57.319 33.333 0.00 0.00 0.00 4.45
318 319 9.907229 CTTCTACCTTTTTCTTACATTATCCCT 57.093 33.333 0.00 0.00 0.00 4.20
319 320 9.901172 TCTTCTACCTTTTTCTTACATTATCCC 57.099 33.333 0.00 0.00 0.00 3.85
324 325 7.608376 GCTCCTCTTCTACCTTTTTCTTACATT 59.392 37.037 0.00 0.00 0.00 2.71
325 326 7.037945 AGCTCCTCTTCTACCTTTTTCTTACAT 60.038 37.037 0.00 0.00 0.00 2.29
326 327 6.270231 AGCTCCTCTTCTACCTTTTTCTTACA 59.730 38.462 0.00 0.00 0.00 2.41
327 328 6.592220 CAGCTCCTCTTCTACCTTTTTCTTAC 59.408 42.308 0.00 0.00 0.00 2.34
328 329 6.702329 CAGCTCCTCTTCTACCTTTTTCTTA 58.298 40.000 0.00 0.00 0.00 2.10
329 330 5.555966 CAGCTCCTCTTCTACCTTTTTCTT 58.444 41.667 0.00 0.00 0.00 2.52
330 331 4.564613 GCAGCTCCTCTTCTACCTTTTTCT 60.565 45.833 0.00 0.00 0.00 2.52
331 332 3.687212 GCAGCTCCTCTTCTACCTTTTTC 59.313 47.826 0.00 0.00 0.00 2.29
332 333 3.680490 GCAGCTCCTCTTCTACCTTTTT 58.320 45.455 0.00 0.00 0.00 1.94
333 334 2.354203 CGCAGCTCCTCTTCTACCTTTT 60.354 50.000 0.00 0.00 0.00 2.27
334 335 1.205893 CGCAGCTCCTCTTCTACCTTT 59.794 52.381 0.00 0.00 0.00 3.11
335 336 0.820871 CGCAGCTCCTCTTCTACCTT 59.179 55.000 0.00 0.00 0.00 3.50
336 337 0.033991 TCGCAGCTCCTCTTCTACCT 60.034 55.000 0.00 0.00 0.00 3.08
337 338 1.000717 GATCGCAGCTCCTCTTCTACC 60.001 57.143 0.00 0.00 0.00 3.18
338 339 1.953686 AGATCGCAGCTCCTCTTCTAC 59.046 52.381 0.00 0.00 0.00 2.59
339 340 1.952990 CAGATCGCAGCTCCTCTTCTA 59.047 52.381 0.00 0.00 0.00 2.10
340 341 0.746063 CAGATCGCAGCTCCTCTTCT 59.254 55.000 0.00 0.00 0.00 2.85
341 342 0.743688 TCAGATCGCAGCTCCTCTTC 59.256 55.000 0.00 0.00 0.00 2.87
342 343 0.459489 GTCAGATCGCAGCTCCTCTT 59.541 55.000 0.00 0.00 0.00 2.85
343 344 1.723608 CGTCAGATCGCAGCTCCTCT 61.724 60.000 0.00 0.00 0.00 3.69
344 345 1.299014 CGTCAGATCGCAGCTCCTC 60.299 63.158 0.00 0.00 0.00 3.71
345 346 2.780094 CCGTCAGATCGCAGCTCCT 61.780 63.158 0.00 0.00 0.00 3.69
346 347 2.279120 CCGTCAGATCGCAGCTCC 60.279 66.667 0.00 0.00 0.00 4.70
347 348 1.587613 GACCGTCAGATCGCAGCTC 60.588 63.158 0.00 0.00 0.00 4.09
348 349 1.999071 GAGACCGTCAGATCGCAGCT 61.999 60.000 0.40 0.00 0.00 4.24
349 350 1.587613 GAGACCGTCAGATCGCAGC 60.588 63.158 0.40 0.00 0.00 5.25
350 351 1.297967 CGAGACCGTCAGATCGCAG 60.298 63.158 0.40 0.00 0.00 5.18
351 352 2.791927 CGAGACCGTCAGATCGCA 59.208 61.111 0.40 0.00 0.00 5.10
353 354 2.351322 CGCGAGACCGTCAGATCG 60.351 66.667 0.00 2.92 38.24 3.69
354 355 2.652496 GCGCGAGACCGTCAGATC 60.652 66.667 12.10 0.00 38.24 2.75
355 356 4.538283 CGCGCGAGACCGTCAGAT 62.538 66.667 28.94 0.00 38.24 2.90
374 375 4.559063 CCCAGCTGCCCGATCTGG 62.559 72.222 8.66 0.00 45.24 3.86
375 376 4.559063 CCCCAGCTGCCCGATCTG 62.559 72.222 8.66 0.00 0.00 2.90
376 377 2.679619 TATCCCCAGCTGCCCGATCT 62.680 60.000 8.66 0.00 0.00 2.75
377 378 2.177594 CTATCCCCAGCTGCCCGATC 62.178 65.000 8.66 0.00 0.00 3.69
378 379 2.122413 TATCCCCAGCTGCCCGAT 60.122 61.111 8.66 10.57 0.00 4.18
379 380 2.844362 CTATCCCCAGCTGCCCGA 60.844 66.667 8.66 2.94 0.00 5.14
380 381 2.844362 TCTATCCCCAGCTGCCCG 60.844 66.667 8.66 0.00 0.00 6.13
381 382 2.823758 GGTCTATCCCCAGCTGCCC 61.824 68.421 8.66 0.00 0.00 5.36
382 383 2.832498 GGTCTATCCCCAGCTGCC 59.168 66.667 8.66 0.00 0.00 4.85
383 384 2.423446 CGGTCTATCCCCAGCTGC 59.577 66.667 8.66 0.00 0.00 5.25
384 385 3.142393 CCGGTCTATCCCCAGCTG 58.858 66.667 6.78 6.78 0.00 4.24
385 386 2.844839 GCCGGTCTATCCCCAGCT 60.845 66.667 1.90 0.00 0.00 4.24
386 387 3.942439 GGCCGGTCTATCCCCAGC 61.942 72.222 1.90 0.00 0.00 4.85
387 388 3.616721 CGGCCGGTCTATCCCCAG 61.617 72.222 20.10 0.00 0.00 4.45
388 389 3.682644 TTCGGCCGGTCTATCCCCA 62.683 63.158 27.83 0.00 0.00 4.96
389 390 2.437396 TTTCGGCCGGTCTATCCCC 61.437 63.158 27.83 0.00 0.00 4.81
390 391 1.227468 GTTTCGGCCGGTCTATCCC 60.227 63.158 27.83 0.89 0.00 3.85
391 392 0.177373 AAGTTTCGGCCGGTCTATCC 59.823 55.000 27.83 6.53 0.00 2.59
392 393 1.931841 GAAAGTTTCGGCCGGTCTATC 59.068 52.381 27.83 13.25 0.00 2.08
393 394 2.019948 GAAAGTTTCGGCCGGTCTAT 57.980 50.000 27.83 7.70 0.00 1.98
394 395 3.520187 GAAAGTTTCGGCCGGTCTA 57.480 52.632 27.83 1.61 0.00 2.59
395 396 4.373771 GAAAGTTTCGGCCGGTCT 57.626 55.556 27.83 17.80 0.00 3.85
404 405 2.126850 GCGCTGGCCGAAAGTTTC 60.127 61.111 0.00 5.47 40.02 2.78
405 406 2.904866 TGCGCTGGCCGAAAGTTT 60.905 55.556 9.73 0.00 40.02 2.66
406 407 3.660111 GTGCGCTGGCCGAAAGTT 61.660 61.111 9.73 0.00 40.02 2.66
432 433 0.746063 TTTCAAAGTGGCCAGCACTG 59.254 50.000 5.11 1.00 32.56 3.66
433 434 1.342174 CATTTCAAAGTGGCCAGCACT 59.658 47.619 5.11 0.00 33.80 4.40
434 435 1.606224 CCATTTCAAAGTGGCCAGCAC 60.606 52.381 5.11 0.00 0.00 4.40
435 436 0.680618 CCATTTCAAAGTGGCCAGCA 59.319 50.000 5.11 0.00 0.00 4.41
436 437 0.037046 CCCATTTCAAAGTGGCCAGC 60.037 55.000 5.11 0.39 34.08 4.85
437 438 1.001181 CACCCATTTCAAAGTGGCCAG 59.999 52.381 5.11 0.00 34.08 4.85
438 439 1.047002 CACCCATTTCAAAGTGGCCA 58.953 50.000 0.00 0.00 34.08 5.36
439 440 1.337118 TCACCCATTTCAAAGTGGCC 58.663 50.000 0.00 0.00 34.08 5.36
440 441 2.102252 TGTTCACCCATTTCAAAGTGGC 59.898 45.455 0.00 0.00 34.08 5.01
441 442 4.399004 TTGTTCACCCATTTCAAAGTGG 57.601 40.909 0.00 0.00 35.22 4.00
442 443 6.423604 GGTAATTGTTCACCCATTTCAAAGTG 59.576 38.462 0.00 0.00 0.00 3.16
443 444 6.521162 GGTAATTGTTCACCCATTTCAAAGT 58.479 36.000 0.00 0.00 0.00 2.66
454 455 6.094325 TGTTATCGATTGGGTAATTGTTCACC 59.906 38.462 1.71 0.00 0.00 4.02
455 456 7.079182 TGTTATCGATTGGGTAATTGTTCAC 57.921 36.000 1.71 0.00 0.00 3.18
456 457 7.689446 TTGTTATCGATTGGGTAATTGTTCA 57.311 32.000 1.71 0.00 0.00 3.18
457 458 7.860872 GGATTGTTATCGATTGGGTAATTGTTC 59.139 37.037 1.71 0.00 0.00 3.18
458 459 7.201875 GGGATTGTTATCGATTGGGTAATTGTT 60.202 37.037 1.71 0.00 0.00 2.83
459 460 6.264518 GGGATTGTTATCGATTGGGTAATTGT 59.735 38.462 1.71 0.00 0.00 2.71
460 461 6.490040 AGGGATTGTTATCGATTGGGTAATTG 59.510 38.462 1.71 0.00 0.00 2.32
461 462 6.610830 AGGGATTGTTATCGATTGGGTAATT 58.389 36.000 1.71 0.00 0.00 1.40
462 463 6.200878 AGGGATTGTTATCGATTGGGTAAT 57.799 37.500 1.71 0.00 0.00 1.89
463 464 5.640158 AGGGATTGTTATCGATTGGGTAA 57.360 39.130 1.71 0.00 0.00 2.85
464 465 6.750660 TTAGGGATTGTTATCGATTGGGTA 57.249 37.500 1.71 0.00 0.00 3.69
465 466 5.640158 TTAGGGATTGTTATCGATTGGGT 57.360 39.130 1.71 0.00 0.00 4.51
466 467 5.240844 GGTTTAGGGATTGTTATCGATTGGG 59.759 44.000 1.71 0.00 0.00 4.12
467 468 5.240844 GGGTTTAGGGATTGTTATCGATTGG 59.759 44.000 1.71 0.00 0.00 3.16
468 469 5.240844 GGGGTTTAGGGATTGTTATCGATTG 59.759 44.000 1.71 0.00 0.00 2.67
469 470 5.382616 GGGGTTTAGGGATTGTTATCGATT 58.617 41.667 1.71 0.00 0.00 3.34
470 471 4.202535 GGGGGTTTAGGGATTGTTATCGAT 60.203 45.833 2.16 2.16 0.00 3.59
471 472 3.136992 GGGGGTTTAGGGATTGTTATCGA 59.863 47.826 0.00 0.00 0.00 3.59
472 473 3.483421 GGGGGTTTAGGGATTGTTATCG 58.517 50.000 0.00 0.00 0.00 2.92
473 474 3.483421 CGGGGGTTTAGGGATTGTTATC 58.517 50.000 0.00 0.00 0.00 1.75
474 475 2.423803 GCGGGGGTTTAGGGATTGTTAT 60.424 50.000 0.00 0.00 0.00 1.89
475 476 1.064537 GCGGGGGTTTAGGGATTGTTA 60.065 52.381 0.00 0.00 0.00 2.41
476 477 0.323999 GCGGGGGTTTAGGGATTGTT 60.324 55.000 0.00 0.00 0.00 2.83
477 478 1.305287 GCGGGGGTTTAGGGATTGT 59.695 57.895 0.00 0.00 0.00 2.71
478 479 1.455032 GGCGGGGGTTTAGGGATTG 60.455 63.158 0.00 0.00 0.00 2.67
479 480 1.621514 AGGCGGGGGTTTAGGGATT 60.622 57.895 0.00 0.00 0.00 3.01
480 481 2.043941 AGGCGGGGGTTTAGGGAT 59.956 61.111 0.00 0.00 0.00 3.85
481 482 2.689771 GAGGCGGGGGTTTAGGGA 60.690 66.667 0.00 0.00 0.00 4.20
482 483 2.691252 AGAGGCGGGGGTTTAGGG 60.691 66.667 0.00 0.00 0.00 3.53
483 484 2.908796 GAGAGGCGGGGGTTTAGG 59.091 66.667 0.00 0.00 0.00 2.69
484 485 2.499685 CGAGAGGCGGGGGTTTAG 59.500 66.667 0.00 0.00 36.03 1.85
485 486 3.777910 GCGAGAGGCGGGGGTTTA 61.778 66.667 0.00 0.00 41.29 2.01
495 496 1.681486 GAAGGGGAGAAGGCGAGAGG 61.681 65.000 0.00 0.00 0.00 3.69
496 497 1.681486 GGAAGGGGAGAAGGCGAGAG 61.681 65.000 0.00 0.00 0.00 3.20
497 498 1.686110 GGAAGGGGAGAAGGCGAGA 60.686 63.158 0.00 0.00 0.00 4.04
498 499 2.736826 GGGAAGGGGAGAAGGCGAG 61.737 68.421 0.00 0.00 0.00 5.03
499 500 2.687566 GGGAAGGGGAGAAGGCGA 60.688 66.667 0.00 0.00 0.00 5.54
500 501 3.798511 GGGGAAGGGGAGAAGGCG 61.799 72.222 0.00 0.00 0.00 5.52
501 502 2.286502 AGGGGAAGGGGAGAAGGC 60.287 66.667 0.00 0.00 0.00 4.35
502 503 2.066999 CGAGGGGAAGGGGAGAAGG 61.067 68.421 0.00 0.00 0.00 3.46
503 504 1.001760 TCGAGGGGAAGGGGAGAAG 59.998 63.158 0.00 0.00 0.00 2.85
504 505 1.305887 GTCGAGGGGAAGGGGAGAA 60.306 63.158 0.00 0.00 0.00 2.87
505 506 2.226149 GAGTCGAGGGGAAGGGGAGA 62.226 65.000 0.00 0.00 0.00 3.71
506 507 1.758906 GAGTCGAGGGGAAGGGGAG 60.759 68.421 0.00 0.00 0.00 4.30
507 508 2.363361 GAGTCGAGGGGAAGGGGA 59.637 66.667 0.00 0.00 0.00 4.81
508 509 2.038975 TGAGTCGAGGGGAAGGGG 59.961 66.667 0.00 0.00 0.00 4.79
509 510 2.359967 GGTGAGTCGAGGGGAAGGG 61.360 68.421 0.00 0.00 0.00 3.95
510 511 0.905337 AAGGTGAGTCGAGGGGAAGG 60.905 60.000 0.00 0.00 0.00 3.46
511 512 0.533032 GAAGGTGAGTCGAGGGGAAG 59.467 60.000 0.00 0.00 0.00 3.46
512 513 0.114560 AGAAGGTGAGTCGAGGGGAA 59.885 55.000 0.00 0.00 0.00 3.97
513 514 0.114560 AAGAAGGTGAGTCGAGGGGA 59.885 55.000 0.00 0.00 0.00 4.81
514 515 0.533032 GAAGAAGGTGAGTCGAGGGG 59.467 60.000 0.00 0.00 0.00 4.79
515 516 0.533032 GGAAGAAGGTGAGTCGAGGG 59.467 60.000 0.00 0.00 0.00 4.30
516 517 1.474879 GAGGAAGAAGGTGAGTCGAGG 59.525 57.143 0.00 0.00 0.00 4.63
517 518 1.131504 CGAGGAAGAAGGTGAGTCGAG 59.868 57.143 0.00 0.00 0.00 4.04
518 519 1.166129 CGAGGAAGAAGGTGAGTCGA 58.834 55.000 0.00 0.00 0.00 4.20
519 520 0.456995 GCGAGGAAGAAGGTGAGTCG 60.457 60.000 0.00 0.00 0.00 4.18
520 521 0.603569 TGCGAGGAAGAAGGTGAGTC 59.396 55.000 0.00 0.00 0.00 3.36
521 522 1.001406 CTTGCGAGGAAGAAGGTGAGT 59.999 52.381 0.00 0.00 0.00 3.41
539 540 1.407989 GCCATTGGTAGAGCAGAGCTT 60.408 52.381 4.26 0.00 39.88 3.74
545 546 3.006677 GGGGCCATTGGTAGAGCA 58.993 61.111 4.39 0.00 0.00 4.26
546 547 2.203209 CGGGGCCATTGGTAGAGC 60.203 66.667 4.39 0.00 0.00 4.09
547 548 1.447643 CTCGGGGCCATTGGTAGAG 59.552 63.158 4.39 4.79 0.00 2.43
548 549 2.742116 GCTCGGGGCCATTGGTAGA 61.742 63.158 4.39 0.00 34.27 2.59
549 550 2.203209 GCTCGGGGCCATTGGTAG 60.203 66.667 4.39 0.00 34.27 3.18
585 586 4.278513 TTCAGGGTGGGCGTTGGG 62.279 66.667 0.00 0.00 0.00 4.12
586 587 2.983592 GTTCAGGGTGGGCGTTGG 60.984 66.667 0.00 0.00 0.00 3.77
736 747 3.069318 ACGAAGTCGAGGAGGCCC 61.069 66.667 7.87 0.00 29.74 5.80
810 822 2.047274 ACGGATCTGTGGTTGGCG 60.047 61.111 6.33 0.00 0.00 5.69
987 1002 1.693083 GCGCCATGACGTACACCTTC 61.693 60.000 2.68 0.00 34.88 3.46
1003 1018 1.458827 GACAGCAGCTTCTATATGCGC 59.541 52.381 0.00 0.00 44.64 6.09
1025 1040 1.598130 AGGTGACGTTGCTTCCTGC 60.598 57.895 0.00 0.00 43.25 4.85
1043 1058 2.560861 GCAACAAATCGCTCCGCA 59.439 55.556 0.00 0.00 0.00 5.69
1051 1066 5.170748 CCACTCCAAATTAGGCAACAAATC 58.829 41.667 0.00 0.00 41.41 2.17
1053 1068 3.323403 CCCACTCCAAATTAGGCAACAAA 59.677 43.478 0.00 0.00 41.41 2.83
1054 1069 2.896685 CCCACTCCAAATTAGGCAACAA 59.103 45.455 0.00 0.00 41.41 2.83
1090 1105 2.674796 ATCAGAGTCGCCCAGTTAAC 57.325 50.000 0.00 0.00 0.00 2.01
1110 1125 1.296715 GTCCCTCGCTTCACACCAT 59.703 57.895 0.00 0.00 0.00 3.55
1116 1131 1.667154 CCATCTCGTCCCTCGCTTCA 61.667 60.000 0.00 0.00 39.67 3.02
1198 1213 2.187073 GCCTCTGCCACCAAATGAG 58.813 57.895 0.00 0.00 0.00 2.90
1218 1233 1.674057 CGGCAACTGGAAGAGGTCT 59.326 57.895 0.00 0.00 37.43 3.85
1256 1271 4.347453 CCTGTTGCTGTTGGGCGC 62.347 66.667 0.00 0.00 34.52 6.53
1267 1282 0.031857 TTGGTGCGAATTGCCTGTTG 59.968 50.000 0.00 0.00 45.60 3.33
1268 1283 0.031994 GTTGGTGCGAATTGCCTGTT 59.968 50.000 0.00 0.00 45.60 3.16
1269 1284 1.659794 GTTGGTGCGAATTGCCTGT 59.340 52.632 0.00 0.00 45.60 4.00
1271 1286 1.112315 TTGGTTGGTGCGAATTGCCT 61.112 50.000 0.00 0.00 45.60 4.75
1272 1287 0.037419 ATTGGTTGGTGCGAATTGCC 60.037 50.000 0.00 0.00 45.60 4.52
1274 1289 2.598589 CTGATTGGTTGGTGCGAATTG 58.401 47.619 0.00 0.00 0.00 2.32
1275 1290 1.067635 GCTGATTGGTTGGTGCGAATT 60.068 47.619 0.00 0.00 0.00 2.17
1277 1292 0.537143 AGCTGATTGGTTGGTGCGAA 60.537 50.000 0.00 0.00 0.00 4.70
1278 1293 0.537143 AAGCTGATTGGTTGGTGCGA 60.537 50.000 0.00 0.00 34.77 5.10
1279 1294 0.109597 GAAGCTGATTGGTTGGTGCG 60.110 55.000 0.00 0.00 36.40 5.34
1280 1295 0.244721 GGAAGCTGATTGGTTGGTGC 59.755 55.000 0.00 0.00 36.40 5.01
1281 1296 0.523072 CGGAAGCTGATTGGTTGGTG 59.477 55.000 0.00 0.00 36.40 4.17
1282 1297 0.400213 TCGGAAGCTGATTGGTTGGT 59.600 50.000 0.00 0.00 36.40 3.67
1283 1298 1.402968 CATCGGAAGCTGATTGGTTGG 59.597 52.381 0.00 0.00 36.40 3.77
1284 1299 2.353889 CTCATCGGAAGCTGATTGGTTG 59.646 50.000 0.00 0.00 35.47 3.77
1285 1300 2.237143 TCTCATCGGAAGCTGATTGGTT 59.763 45.455 0.00 0.00 35.47 3.67
1353 1368 2.382882 TCGATCTGCTTGGATCTCACT 58.617 47.619 11.09 0.00 39.73 3.41
1364 1379 4.063689 CTCTAATGCCAAATCGATCTGCT 58.936 43.478 0.00 0.00 0.00 4.24
1407 1422 3.330853 GACGTCGCATCGATGGCC 61.331 66.667 26.00 10.02 44.21 5.36
1422 1437 6.145535 GGATATCGCATCAAATTTCTTGGAC 58.854 40.000 0.00 0.00 0.00 4.02
1439 1454 3.995526 TCCAGCTGCTTGGATATCG 57.004 52.632 8.66 0.00 42.24 2.92
1460 1475 1.598132 CATCCAGCTGCTTTGATCTCG 59.402 52.381 8.66 0.00 0.00 4.04
1474 1489 1.817099 GCTCCGACCTTGCATCCAG 60.817 63.158 0.00 0.00 0.00 3.86
1482 1497 2.348998 CCAAGCTGCTCCGACCTT 59.651 61.111 1.00 0.00 0.00 3.50
1599 1614 0.097674 CTTTCCGAGCATTCCAAGCG 59.902 55.000 0.00 0.00 37.01 4.68
1602 1617 0.881118 GCACTTTCCGAGCATTCCAA 59.119 50.000 0.00 0.00 0.00 3.53
1800 1919 1.860950 CTGACACCTATATGTGCACGC 59.139 52.381 13.13 0.00 39.93 5.34
1802 1921 4.060900 CCATCTGACACCTATATGTGCAC 58.939 47.826 10.75 10.75 39.93 4.57
1916 2038 1.885233 TCGCAATTTCATCTTGCCACA 59.115 42.857 2.73 0.00 44.82 4.17
1935 2057 2.264480 GGGCGCCAATTTGGGTTC 59.736 61.111 30.85 1.84 38.19 3.62
1968 2090 5.046878 ACATACCGTCTCTTTACCATCAACA 60.047 40.000 0.00 0.00 0.00 3.33
2003 2125 7.038658 GGAAACTAGGAATGGTAGCTGAGATAT 60.039 40.741 0.00 0.00 0.00 1.63
2028 2150 8.336801 ACAAAATAGAAACTACCAAAGCTAGG 57.663 34.615 3.67 3.67 0.00 3.02
2048 2170 8.918202 ATTACAGATGACTCAAGGTTACAAAA 57.082 30.769 0.00 0.00 0.00 2.44
2081 2203 9.346005 TGTAATGTGCAGAATTGATCAGAATAT 57.654 29.630 0.00 0.00 0.00 1.28
2097 2219 8.570488 GGAATTGAATGATAGATGTAATGTGCA 58.430 33.333 0.00 0.00 0.00 4.57
2110 2232 7.093421 TGCAAAACCAGATGGAATTGAATGATA 60.093 33.333 18.80 2.66 36.86 2.15
2113 2235 5.239351 TGCAAAACCAGATGGAATTGAATG 58.761 37.500 18.80 6.71 36.86 2.67
2114 2236 5.486735 TGCAAAACCAGATGGAATTGAAT 57.513 34.783 18.80 0.00 36.86 2.57
2115 2237 4.952071 TGCAAAACCAGATGGAATTGAA 57.048 36.364 18.80 10.23 36.86 2.69
2116 2238 4.952071 TTGCAAAACCAGATGGAATTGA 57.048 36.364 18.80 7.17 36.86 2.57
2157 2279 7.864686 TGAATCATGGAAATATTTGCGAGTAG 58.135 34.615 14.09 3.55 0.00 2.57
2158 2280 7.800155 TGAATCATGGAAATATTTGCGAGTA 57.200 32.000 14.09 0.00 0.00 2.59
2256 2378 4.437239 CGTAGATTTCTTGACCATGCTCT 58.563 43.478 0.00 0.00 0.00 4.09
2266 2388 4.693566 TGTTACCAAGGCGTAGATTTCTTG 59.306 41.667 0.00 0.00 37.09 3.02
2272 2394 3.377172 GCATTTGTTACCAAGGCGTAGAT 59.623 43.478 0.00 0.00 0.00 1.98
2323 2445 3.375239 TACACCTACGCGGCAGCA 61.375 61.111 12.47 0.00 45.49 4.41
2326 2448 2.990395 TGGTACACCTACGCGGCA 60.990 61.111 12.47 0.00 36.82 5.69
2364 2486 0.249868 CCAGTGTTGCTCTTCGACCA 60.250 55.000 0.00 0.00 0.00 4.02
2370 2492 2.952310 GGTTTCTTCCAGTGTTGCTCTT 59.048 45.455 0.00 0.00 0.00 2.85
2441 2563 6.516718 AGATCACAGATAAATCGTAAGTGGG 58.483 40.000 0.00 0.00 39.48 4.61
2449 2571 4.926238 GCACCCTAGATCACAGATAAATCG 59.074 45.833 0.00 0.00 0.00 3.34
2459 2581 0.813210 GCAGCAGCACCCTAGATCAC 60.813 60.000 0.00 0.00 41.58 3.06
2492 2614 5.767816 AAGTTCAAGGTGCGAATAGTTTT 57.232 34.783 0.00 0.00 0.00 2.43
2494 2616 6.147328 GTCTAAAGTTCAAGGTGCGAATAGTT 59.853 38.462 0.00 0.00 0.00 2.24
2502 2624 5.701290 ACACTATGTCTAAAGTTCAAGGTGC 59.299 40.000 0.00 0.00 0.00 5.01
2531 2653 5.482908 CTTGAAACAGTCCACTAGCACTAT 58.517 41.667 0.00 0.00 0.00 2.12
2551 2673 3.596214 ACAGTAAACCGCTGATACCTTG 58.404 45.455 0.00 0.00 37.40 3.61
2552 2674 3.975168 ACAGTAAACCGCTGATACCTT 57.025 42.857 0.00 0.00 37.40 3.50
2561 2683 3.072211 AGGCTAAGAAACAGTAAACCGC 58.928 45.455 0.00 0.00 0.00 5.68
2562 2684 4.753107 TCAAGGCTAAGAAACAGTAAACCG 59.247 41.667 0.00 0.00 0.00 4.44
2621 2744 4.552184 GCGAACGCTACAATAGGAAAATCC 60.552 45.833 11.97 0.00 38.26 3.01
2629 2752 2.469826 TCCATGCGAACGCTACAATAG 58.530 47.619 19.32 0.00 42.51 1.73
2631 2754 1.599071 CATCCATGCGAACGCTACAAT 59.401 47.619 19.32 2.61 42.51 2.71
2634 2757 1.276844 GCATCCATGCGAACGCTAC 59.723 57.895 19.32 0.00 44.67 3.58
2683 2814 6.570186 GCACACACCATATTCACAAAAGATGA 60.570 38.462 0.00 0.00 0.00 2.92
2684 2815 5.574055 GCACACACCATATTCACAAAAGATG 59.426 40.000 0.00 0.00 0.00 2.90
2701 2832 2.032681 GGTCCTGAGGGCACACAC 59.967 66.667 5.06 0.00 0.00 3.82
2720 2851 3.034635 AGGACAGAAGCATACCTACAGG 58.965 50.000 0.00 0.00 42.17 4.00
2724 2855 3.195610 CACACAGGACAGAAGCATACCTA 59.804 47.826 0.00 0.00 0.00 3.08
2727 2858 2.738846 CACACACAGGACAGAAGCATAC 59.261 50.000 0.00 0.00 0.00 2.39
2734 2865 0.541392 AAGCACACACACAGGACAGA 59.459 50.000 0.00 0.00 0.00 3.41
2763 2894 5.833667 TCTCAGTGACAGAGGAACTTTCTTA 59.166 40.000 5.14 0.00 41.55 2.10
2767 2898 4.219115 TCTCTCAGTGACAGAGGAACTTT 58.781 43.478 5.14 0.00 41.55 2.66
2780 2911 4.439974 GGCAGTTGTATCTCTCTCTCAGTG 60.440 50.000 0.00 0.00 0.00 3.66
2784 2915 3.951037 TGAGGCAGTTGTATCTCTCTCTC 59.049 47.826 0.00 0.00 0.00 3.20
2796 2927 0.325933 TCAGGTCCATGAGGCAGTTG 59.674 55.000 0.00 0.00 33.74 3.16
2797 2928 0.617413 CTCAGGTCCATGAGGCAGTT 59.383 55.000 0.00 0.00 42.52 3.16
2815 2946 5.382616 TGCTGCTTATCCATGATCAATTCT 58.617 37.500 0.00 0.00 0.00 2.40
2816 2947 5.335740 CCTGCTGCTTATCCATGATCAATTC 60.336 44.000 0.00 0.00 0.00 2.17
2828 2959 3.760580 ACCTATGTCCTGCTGCTTATC 57.239 47.619 0.00 0.00 0.00 1.75
2846 2983 2.492088 GCCACAGGACCTTCATTTTACC 59.508 50.000 0.00 0.00 0.00 2.85
2886 3036 9.304731 CTAAATTAAGCAGCATTATTTCTTGCA 57.695 29.630 0.00 0.00 41.35 4.08
2915 3065 3.808174 GGAAAGCTTACACCTATTAGCGG 59.192 47.826 0.00 0.00 38.62 5.52
2916 3066 4.270325 GTGGAAAGCTTACACCTATTAGCG 59.730 45.833 18.55 0.00 38.62 4.26
2919 3069 5.172934 CACGTGGAAAGCTTACACCTATTA 58.827 41.667 21.60 1.44 0.00 0.98
2920 3070 4.000988 CACGTGGAAAGCTTACACCTATT 58.999 43.478 21.60 7.25 0.00 1.73
2921 3071 3.596214 CACGTGGAAAGCTTACACCTAT 58.404 45.455 21.60 10.00 0.00 2.57
2924 3074 0.237498 GCACGTGGAAAGCTTACACC 59.763 55.000 18.88 15.84 0.00 4.16
2946 3096 4.427312 CCTCCATTGCTTTGACAATAAGC 58.573 43.478 5.12 5.12 46.33 3.09
2950 3100 2.232941 CAGCCTCCATTGCTTTGACAAT 59.767 45.455 0.00 0.00 40.90 2.71
3004 3155 6.732531 ACCAGCCGAGTAAGTAAATAAAAC 57.267 37.500 0.00 0.00 0.00 2.43
3014 3165 0.673644 CACCCAACCAGCCGAGTAAG 60.674 60.000 0.00 0.00 0.00 2.34
3015 3166 1.373435 CACCCAACCAGCCGAGTAA 59.627 57.895 0.00 0.00 0.00 2.24
3021 3172 0.179001 AGTAACACACCCAACCAGCC 60.179 55.000 0.00 0.00 0.00 4.85
3027 3178 1.213182 TGCTGGAAGTAACACACCCAA 59.787 47.619 0.00 0.00 35.30 4.12
3030 3181 2.290641 CACTTGCTGGAAGTAACACACC 59.709 50.000 14.34 0.00 43.52 4.16
3036 3188 6.680810 CAATGAAATCACTTGCTGGAAGTAA 58.319 36.000 14.34 0.00 43.52 2.24
3069 3221 5.294734 ACGGAAGTTTACTTTCCCTGTTA 57.705 39.130 0.00 0.00 46.40 2.41
3072 3224 3.683340 GCTACGGAAGTTTACTTTCCCTG 59.317 47.826 0.00 0.00 46.40 4.45
3073 3225 3.581770 AGCTACGGAAGTTTACTTTCCCT 59.418 43.478 0.00 0.00 46.40 4.20
3083 3360 0.036294 GAAGGGCAGCTACGGAAGTT 60.036 55.000 0.00 0.00 46.40 2.66
3098 3375 7.385267 AGAGTTGATATATAGCAAGCAGAAGG 58.615 38.462 13.53 0.00 31.60 3.46
3099 3376 8.830201 AAGAGTTGATATATAGCAAGCAGAAG 57.170 34.615 13.53 0.00 31.60 2.85
3129 3406 5.046950 ACCAACTCAAACCTTTGCAAGTAAA 60.047 36.000 0.00 0.00 38.05 2.01
3136 3415 1.806247 GCCACCAACTCAAACCTTTGC 60.806 52.381 0.00 0.00 38.05 3.68
3142 3421 2.422276 GTGATGCCACCAACTCAAAC 57.578 50.000 0.00 0.00 37.33 2.93
3157 3436 3.222603 GAAAAGGTGGTGAACAGGTGAT 58.777 45.455 0.00 0.00 0.00 3.06
3163 3442 2.940410 GAGAACGAAAAGGTGGTGAACA 59.060 45.455 0.00 0.00 0.00 3.18
3170 3449 2.223144 TCATTGCGAGAACGAAAAGGTG 59.777 45.455 0.00 0.00 40.62 4.00
3175 3454 4.481930 ACATTTCATTGCGAGAACGAAA 57.518 36.364 0.00 0.00 41.53 3.46
3178 3457 3.333723 CGTACATTTCATTGCGAGAACG 58.666 45.455 0.00 0.00 42.93 3.95
3191 3473 2.159707 GCGTTGTCTCATGCGTACATTT 60.160 45.455 0.00 0.00 32.87 2.32
3198 3480 1.129879 GCATTGCGTTGTCTCATGCG 61.130 55.000 0.00 0.00 0.00 4.73
3202 3484 0.109643 GCATGCATTGCGTTGTCTCA 60.110 50.000 14.21 0.00 42.54 3.27
3244 3526 5.475564 AGCCAATCCGCGGTAATAAAATTAT 59.524 36.000 27.15 3.59 0.00 1.28
3252 3534 0.107410 TGAAGCCAATCCGCGGTAAT 60.107 50.000 27.15 9.68 0.00 1.89
3255 3537 0.965363 ATTTGAAGCCAATCCGCGGT 60.965 50.000 27.15 10.00 31.46 5.68
3259 3541 3.443681 ACCAACTATTTGAAGCCAATCCG 59.556 43.478 0.00 0.00 34.24 4.18
3277 3559 5.305644 ACATAAACACAGCCCAAAATACCAA 59.694 36.000 0.00 0.00 0.00 3.67
3288 3570 3.146066 TCCAGAACACATAAACACAGCC 58.854 45.455 0.00 0.00 0.00 4.85
3322 3604 6.129035 GGCACACCGTAAAACATTTGAATTAC 60.129 38.462 0.00 0.00 0.00 1.89
3331 3613 4.274950 GCATATAGGCACACCGTAAAACAT 59.725 41.667 4.13 0.00 42.76 2.71
3333 3615 3.875134 AGCATATAGGCACACCGTAAAAC 59.125 43.478 12.54 0.00 42.76 2.43
3339 3621 4.314961 TGATTAAGCATATAGGCACACCG 58.685 43.478 12.54 0.00 42.76 4.94
3342 3624 5.879763 ACCATGATTAAGCATATAGGCACA 58.120 37.500 12.54 4.26 35.83 4.57
3343 3625 6.824305 AACCATGATTAAGCATATAGGCAC 57.176 37.500 12.54 0.00 35.83 5.01
3346 3628 8.632679 ACAACAAACCATGATTAAGCATATAGG 58.367 33.333 5.78 6.46 0.00 2.57
3351 3633 5.933463 CCAACAACAAACCATGATTAAGCAT 59.067 36.000 0.00 0.00 0.00 3.79
3415 3697 3.138304 CGCCGGAATGGAATATTCAAGA 58.862 45.455 17.07 1.03 42.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.