Multiple sequence alignment - TraesCS3D01G454800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G454800 chr3D 100.000 4717 0 0 1 4717 561104390 561099674 0.000000e+00 8711.0
1 TraesCS3D01G454800 chr3D 87.321 418 36 8 2028 2428 561093925 561093508 3.330000e-126 462.0
2 TraesCS3D01G454800 chr3D 89.045 356 39 0 3349 3704 561092195 561091840 4.330000e-120 442.0
3 TraesCS3D01G454800 chr3D 88.189 254 24 5 3073 3323 561092443 561092193 9.920000e-77 298.0
4 TraesCS3D01G454800 chr3D 83.525 261 27 13 3643 3894 561005979 561005726 3.670000e-56 230.0
5 TraesCS3D01G454800 chr3D 84.167 120 17 2 73 191 519874588 519874470 1.070000e-21 115.0
6 TraesCS3D01G454800 chr3B 91.727 2913 179 25 1428 4316 747803273 747800399 0.000000e+00 3988.0
7 TraesCS3D01G454800 chr3B 89.072 851 78 6 1574 2414 817540477 817539632 0.000000e+00 1042.0
8 TraesCS3D01G454800 chr3B 90.074 675 60 4 1574 2246 710463235 710463904 0.000000e+00 869.0
9 TraesCS3D01G454800 chr3B 91.681 565 24 5 847 1389 747804004 747803441 0.000000e+00 761.0
10 TraesCS3D01G454800 chr3B 91.355 428 34 3 2951 3378 747782979 747782555 2.450000e-162 582.0
11 TraesCS3D01G454800 chr3B 82.576 660 80 21 1 642 747809197 747808555 2.480000e-152 549.0
12 TraesCS3D01G454800 chr3B 84.022 363 36 9 2028 2379 747704265 747703914 3.520000e-86 329.0
13 TraesCS3D01G454800 chr3B 76.846 298 38 12 2558 2852 747802700 747802431 6.360000e-29 139.0
14 TraesCS3D01G454800 chr3B 84.091 88 13 1 2767 2854 747785110 747785024 3.020000e-12 84.2
15 TraesCS3D01G454800 chr3B 78.767 146 16 8 2717 2852 817539901 817539761 3.020000e-12 84.2
16 TraesCS3D01G454800 chr3B 91.228 57 3 1 2337 2391 747783031 747782975 5.060000e-10 76.8
17 TraesCS3D01G454800 chr3B 93.617 47 1 2 4411 4457 564040823 564040779 8.470000e-08 69.4
18 TraesCS3D01G454800 chr3B 94.872 39 1 1 264 302 3214483 3214446 5.100000e-05 60.2
19 TraesCS3D01G454800 chr3A 93.581 2368 111 19 1965 4316 697251886 697249544 0.000000e+00 3493.0
20 TraesCS3D01G454800 chr3A 91.337 935 57 7 978 1901 697252826 697251905 0.000000e+00 1256.0
21 TraesCS3D01G454800 chr3A 88.263 213 18 1 4505 4717 697249169 697248964 1.010000e-61 248.0
22 TraesCS3D01G454800 chr3A 76.101 477 55 29 2558 3002 697251836 697251387 1.340000e-45 195.0
23 TraesCS3D01G454800 chr3A 92.481 133 10 0 4371 4503 697249364 697249232 1.730000e-44 191.0
24 TraesCS3D01G454800 chr3A 95.238 105 4 1 854 958 697253197 697253094 1.050000e-36 165.0
25 TraesCS3D01G454800 chr3A 83.333 132 20 2 73 203 535229036 535228906 2.310000e-23 121.0
26 TraesCS3D01G454800 chr3A 83.333 90 9 5 264 352 646122105 646122189 1.410000e-10 78.7
27 TraesCS3D01G454800 chr7B 89.614 674 64 3 1574 2246 604534294 604534962 0.000000e+00 852.0
28 TraesCS3D01G454800 chr7B 89.086 678 67 4 1574 2250 689376066 689376737 0.000000e+00 835.0
29 TraesCS3D01G454800 chr7B 88.889 54 3 2 4408 4461 42370409 42370459 3.940000e-06 63.9
30 TraesCS3D01G454800 chr4B 89.021 674 68 3 1574 2246 84333207 84333875 0.000000e+00 830.0
31 TraesCS3D01G454800 chr2B 89.021 674 68 3 1574 2246 40807690 40807022 0.000000e+00 830.0
32 TraesCS3D01G454800 chr2B 81.818 132 22 2 73 203 785905550 785905420 4.990000e-20 110.0
33 TraesCS3D01G454800 chr5B 91.339 254 21 1 1574 1826 676301126 676301379 3.490000e-91 346.0
34 TraesCS3D01G454800 chr5B 90.244 41 3 1 802 841 398005806 398005846 9.000000e-03 52.8
35 TraesCS3D01G454800 chr7A 82.707 133 23 0 71 203 602710343 602710211 8.290000e-23 119.0
36 TraesCS3D01G454800 chr7A 88.889 54 3 3 4409 4462 285646 285696 3.940000e-06 63.9
37 TraesCS3D01G454800 chr6D 83.607 122 20 0 80 201 434162280 434162401 1.070000e-21 115.0
38 TraesCS3D01G454800 chr6D 93.333 45 1 1 4410 4454 29231724 29231766 1.100000e-06 65.8
39 TraesCS3D01G454800 chr6D 89.796 49 4 1 264 312 80109475 80109522 1.420000e-05 62.1
40 TraesCS3D01G454800 chr2D 82.836 134 17 6 73 203 476279298 476279168 1.070000e-21 115.0
41 TraesCS3D01G454800 chr2D 81.818 132 22 2 73 203 637136339 637136469 4.990000e-20 110.0
42 TraesCS3D01G454800 chr2D 75.314 239 47 9 216 449 487317503 487317734 2.320000e-18 104.0
43 TraesCS3D01G454800 chr2D 81.928 83 11 3 357 437 36218136 36218216 3.050000e-07 67.6
44 TraesCS3D01G454800 chr2A 81.343 134 23 2 71 203 593313671 593313803 1.790000e-19 108.0
45 TraesCS3D01G454800 chr2A 92.857 42 3 0 395 436 17816166 17816125 1.420000e-05 62.1
46 TraesCS3D01G454800 chr5A 80.282 142 22 6 298 436 12023773 12023911 8.350000e-18 102.0
47 TraesCS3D01G454800 chr5A 93.182 44 2 1 399 441 623550083 623550040 3.940000e-06 63.9
48 TraesCS3D01G454800 chr1A 79.562 137 18 8 329 460 316956715 316956584 6.500000e-14 89.8
49 TraesCS3D01G454800 chr1A 94.643 56 3 0 4402 4457 530164623 530164678 2.340000e-13 87.9
50 TraesCS3D01G454800 chr1B 88.889 72 6 2 281 351 429225183 429225253 2.340000e-13 87.9
51 TraesCS3D01G454800 chrUn 78.195 133 22 6 212 337 91449614 91449482 1.410000e-10 78.7
52 TraesCS3D01G454800 chrUn 96.970 33 1 0 275 307 102576670 102576702 6.590000e-04 56.5
53 TraesCS3D01G454800 chr4D 92.000 50 2 2 4408 4457 505657730 505657777 8.470000e-08 69.4
54 TraesCS3D01G454800 chr1D 92.000 50 2 2 4408 4457 393127439 393127486 8.470000e-08 69.4
55 TraesCS3D01G454800 chr6A 86.207 58 5 2 4408 4465 306410681 306410735 5.100000e-05 60.2
56 TraesCS3D01G454800 chr6A 92.105 38 1 2 267 302 530276882 530276919 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G454800 chr3D 561099674 561104390 4716 True 8711.000000 8711 100.000000 1 4717 1 chr3D.!!$R3 4716
1 TraesCS3D01G454800 chr3D 561091840 561093925 2085 True 400.666667 462 88.185000 2028 3704 3 chr3D.!!$R4 1676
2 TraesCS3D01G454800 chr3B 747800399 747804004 3605 True 1629.333333 3988 86.751333 847 4316 3 chr3B.!!$R6 3469
3 TraesCS3D01G454800 chr3B 710463235 710463904 669 False 869.000000 869 90.074000 1574 2246 1 chr3B.!!$F1 672
4 TraesCS3D01G454800 chr3B 817539632 817540477 845 True 563.100000 1042 83.919500 1574 2852 2 chr3B.!!$R7 1278
5 TraesCS3D01G454800 chr3B 747808555 747809197 642 True 549.000000 549 82.576000 1 642 1 chr3B.!!$R4 641
6 TraesCS3D01G454800 chr3B 747782555 747785110 2555 True 247.666667 582 88.891333 2337 3378 3 chr3B.!!$R5 1041
7 TraesCS3D01G454800 chr3A 697248964 697253197 4233 True 924.666667 3493 89.500167 854 4717 6 chr3A.!!$R2 3863
8 TraesCS3D01G454800 chr7B 604534294 604534962 668 False 852.000000 852 89.614000 1574 2246 1 chr7B.!!$F2 672
9 TraesCS3D01G454800 chr7B 689376066 689376737 671 False 835.000000 835 89.086000 1574 2250 1 chr7B.!!$F3 676
10 TraesCS3D01G454800 chr4B 84333207 84333875 668 False 830.000000 830 89.021000 1574 2246 1 chr4B.!!$F1 672
11 TraesCS3D01G454800 chr2B 40807022 40807690 668 True 830.000000 830 89.021000 1574 2246 1 chr2B.!!$R1 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
746 761 0.038251 AGCTCGACGCATCAAAGTGA 60.038 50.000 9.09 0.00 42.61 3.41 F
793 808 0.105401 TGGGCGGGGATGTAGATGTA 60.105 55.000 0.00 0.00 0.00 2.29 F
794 809 0.320697 GGGCGGGGATGTAGATGTAC 59.679 60.000 0.00 0.00 0.00 2.90 F
827 842 0.325933 CATGAGAAGCTGGTGGGTCA 59.674 55.000 0.00 0.00 0.00 4.02 F
828 843 1.067295 ATGAGAAGCTGGTGGGTCAA 58.933 50.000 0.00 0.00 0.00 3.18 F
835 850 1.355720 AGCTGGTGGGTCAAATAGCTT 59.644 47.619 0.00 0.00 38.24 3.74 F
944 962 1.419374 GTGTACTCGCACTTGTCCTG 58.581 55.000 0.00 0.00 36.51 3.86 F
1353 1638 1.677637 ATTCCGTTCCTCGAGGGCTC 61.678 60.000 30.80 18.92 42.86 4.70 F
1733 2189 2.037901 TGGTTTGCCAATCTGCTTCAA 58.962 42.857 0.00 0.00 42.83 2.69 F
2523 3017 3.382546 GGTATTCATTGATGCTGCCAACT 59.617 43.478 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2499 2993 2.953648 TGGCAGCATCAATGAATACCAG 59.046 45.455 0.00 0.0 0.00 4.00 R
2502 2996 4.644103 AGTTGGCAGCATCAATGAATAC 57.356 40.909 3.63 0.0 0.00 1.89 R
2537 3031 6.070881 TGGCAGCACCACTAAAATTATTTCAT 60.071 34.615 0.00 0.0 46.36 2.57 R
2579 3073 7.009540 GCACCATCAATGAATTTTACAACTAGC 59.990 37.037 0.00 0.0 0.00 3.42 R
2704 3199 7.399191 ACTGTACTACAATATTCCCTGTTCTCA 59.601 37.037 0.00 0.0 0.00 3.27 R
2842 3340 1.327303 CAGCACCTGCCAAACCTAAA 58.673 50.000 0.00 0.0 43.38 1.85 R
2926 3424 4.114073 TCACTCAAGCAAACAAAATGCAG 58.886 39.130 0.00 0.0 46.22 4.41 R
2998 3496 5.907207 AGAAGTAGACATGCATACGAACAT 58.093 37.500 0.00 0.0 0.00 2.71 R
3665 5149 0.543277 TGGCCATGACTAGCAAGAGG 59.457 55.000 0.00 0.0 0.00 3.69 R
4473 6111 0.251653 ACCTAGCCGGAGACTGTCAA 60.252 55.000 5.05 0.0 36.31 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.654863 CAAGGGTAGGGCTATTTGTGG 58.345 52.381 0.00 0.00 0.00 4.17
28 29 1.063942 GGGTAGGGCTATTTGTGGCTT 60.064 52.381 0.00 0.00 0.00 4.35
44 45 0.790814 GCTTGTGCGTAGTTGGTCTC 59.209 55.000 0.00 0.00 0.00 3.36
66 67 3.793559 GTGAACCAGCTATTCACGGTAT 58.206 45.455 21.05 1.59 44.65 2.73
68 69 2.795175 ACCAGCTATTCACGGTATCG 57.205 50.000 0.00 0.00 43.02 2.92
116 117 1.873698 ATCACTTAAACCGTGCGTGT 58.126 45.000 0.00 0.00 32.54 4.49
122 123 3.120923 ACTTAAACCGTGCGTGTAAATCG 60.121 43.478 0.00 0.00 0.00 3.34
137 138 5.003402 GTGTAAATCGCAAATCATTTCCACG 59.997 40.000 0.00 0.00 0.00 4.94
160 161 4.156739 GGTTGGATTTCCTGTGTTGAGATC 59.843 45.833 0.00 0.00 36.82 2.75
169 170 4.039245 TCCTGTGTTGAGATCTTCGAAACT 59.961 41.667 0.00 0.00 29.78 2.66
176 177 6.152831 TGTTGAGATCTTCGAAACTAGATCCA 59.847 38.462 17.33 13.24 45.05 3.41
178 179 6.565234 TGAGATCTTCGAAACTAGATCCAAC 58.435 40.000 17.33 11.62 45.05 3.77
215 216 5.333263 CGATGAACTTTTGGAAATTTGTGCC 60.333 40.000 0.00 0.00 0.00 5.01
244 245 3.057876 CGAAGCTAATCTATGCCTCTCGT 60.058 47.826 0.00 0.00 0.00 4.18
326 330 5.011329 TCTGTACCTCCACACGAAGTAAATT 59.989 40.000 0.00 0.00 41.61 1.82
327 331 5.613329 TGTACCTCCACACGAAGTAAATTT 58.387 37.500 0.00 0.00 41.61 1.82
340 344 3.740115 AGTAAATTTGTGCCTCTCGTGT 58.260 40.909 0.00 0.00 0.00 4.49
377 381 4.799715 TTTTTCCTTTCTGGGAGGTACA 57.200 40.909 0.00 0.00 36.66 2.90
378 382 4.799715 TTTTCCTTTCTGGGAGGTACAA 57.200 40.909 0.00 0.00 36.66 2.41
379 383 5.333566 TTTTCCTTTCTGGGAGGTACAAT 57.666 39.130 0.00 0.00 36.66 2.71
382 386 3.655777 TCCTTTCTGGGAGGTACAATTGT 59.344 43.478 16.68 16.68 35.71 2.71
383 387 3.758554 CCTTTCTGGGAGGTACAATTGTG 59.241 47.826 21.42 1.63 0.00 3.33
392 396 3.559238 GGTACAATTGTGCCTCTTGTG 57.441 47.619 31.50 0.00 45.69 3.33
394 398 3.568007 GGTACAATTGTGCCTCTTGTGAA 59.432 43.478 31.50 2.01 45.69 3.18
395 399 4.037446 GGTACAATTGTGCCTCTTGTGAAA 59.963 41.667 31.50 1.81 45.69 2.69
397 401 3.701040 ACAATTGTGCCTCTTGTGAAAGT 59.299 39.130 11.07 0.00 32.16 2.66
410 414 4.829064 TGTGAAAGTAAACATGTGCCTC 57.171 40.909 0.00 0.00 0.00 4.70
413 417 3.568007 TGAAAGTAAACATGTGCCTCCAC 59.432 43.478 0.00 0.00 42.40 4.02
427 431 2.747446 GCCTCCACGAGAAGCAAATTTA 59.253 45.455 0.00 0.00 0.00 1.40
439 443 3.051606 GCAAATTTATGCTTCTCGCGA 57.948 42.857 9.26 9.26 43.06 5.87
521 536 2.159517 CCTTTTTGAGTGTGCCTATCGC 60.160 50.000 0.00 0.00 38.31 4.58
533 548 3.006940 TGCCTATCGCGAAAATGAAACT 58.993 40.909 15.24 0.00 42.08 2.66
534 549 3.438781 TGCCTATCGCGAAAATGAAACTT 59.561 39.130 15.24 0.00 42.08 2.66
544 559 4.970003 CGAAAATGAAACTTGTGTCTCCAC 59.030 41.667 0.00 0.00 42.19 4.02
546 561 2.971660 TGAAACTTGTGTCTCCACGA 57.028 45.000 0.00 0.00 44.92 4.35
562 577 2.350772 CCACGAGAAACAAATCTGTGCC 60.351 50.000 0.00 0.00 35.37 5.01
565 580 1.537202 GAGAAACAAATCTGTGCCGCT 59.463 47.619 0.00 0.00 35.37 5.52
569 584 3.490759 AAATCTGTGCCGCTCGCG 61.491 61.111 0.00 0.00 42.08 5.87
581 596 1.318251 CGCTCGCGGAAAAAGAAAAG 58.682 50.000 6.13 0.00 35.56 2.27
582 597 1.053048 GCTCGCGGAAAAAGAAAAGC 58.947 50.000 6.13 0.00 0.00 3.51
583 598 1.599419 GCTCGCGGAAAAAGAAAAGCA 60.599 47.619 6.13 0.00 0.00 3.91
584 599 2.922335 GCTCGCGGAAAAAGAAAAGCAT 60.922 45.455 6.13 0.00 0.00 3.79
625 640 3.320673 AACCTAGAGAAAACCGAGCAG 57.679 47.619 0.00 0.00 0.00 4.24
642 657 4.676723 CGAGCAGAAACCAAAAACCTGAAA 60.677 41.667 0.00 0.00 0.00 2.69
645 660 4.094294 GCAGAAACCAAAAACCTGAAAACC 59.906 41.667 0.00 0.00 0.00 3.27
646 661 4.634004 CAGAAACCAAAAACCTGAAAACCC 59.366 41.667 0.00 0.00 0.00 4.11
649 664 4.642466 ACCAAAAACCTGAAAACCCAAA 57.358 36.364 0.00 0.00 0.00 3.28
650 665 4.986783 ACCAAAAACCTGAAAACCCAAAA 58.013 34.783 0.00 0.00 0.00 2.44
651 666 5.386060 ACCAAAAACCTGAAAACCCAAAAA 58.614 33.333 0.00 0.00 0.00 1.94
691 706 8.956426 ACGCACAAATATAATAATATCCCAAGG 58.044 33.333 0.00 0.00 0.00 3.61
692 707 9.173021 CGCACAAATATAATAATATCCCAAGGA 57.827 33.333 0.00 0.00 35.55 3.36
699 714 9.700831 ATATAATAATATCCCAAGGAAACAGCC 57.299 33.333 0.00 0.00 34.34 4.85
700 715 3.756082 AATATCCCAAGGAAACAGCCA 57.244 42.857 0.00 0.00 34.34 4.75
701 716 3.979501 ATATCCCAAGGAAACAGCCAT 57.020 42.857 0.00 0.00 34.34 4.40
704 719 0.890683 CCCAAGGAAACAGCCATCAC 59.109 55.000 0.00 0.00 0.00 3.06
705 720 0.523072 CCAAGGAAACAGCCATCACG 59.477 55.000 0.00 0.00 0.00 4.35
706 721 0.109597 CAAGGAAACAGCCATCACGC 60.110 55.000 0.00 0.00 0.00 5.34
708 723 2.032634 GGAAACAGCCATCACGCGA 61.033 57.895 15.93 0.00 0.00 5.87
709 724 1.369091 GGAAACAGCCATCACGCGAT 61.369 55.000 15.93 0.00 0.00 4.58
711 726 1.867233 GAAACAGCCATCACGCGATAT 59.133 47.619 15.93 1.88 0.00 1.63
713 728 3.319137 AACAGCCATCACGCGATATAT 57.681 42.857 15.93 0.00 0.00 0.86
715 730 1.929169 CAGCCATCACGCGATATATGG 59.071 52.381 15.93 19.50 41.55 2.74
717 732 1.290203 CCATCACGCGATATATGGGC 58.710 55.000 15.93 0.00 36.12 5.36
738 753 2.103934 GCTGAGAGCTCGACGCAT 59.896 61.111 8.37 0.00 42.61 4.73
741 756 0.179153 CTGAGAGCTCGACGCATCAA 60.179 55.000 8.37 0.00 42.61 2.57
742 757 0.243636 TGAGAGCTCGACGCATCAAA 59.756 50.000 8.37 0.00 42.61 2.69
743 758 0.919981 GAGAGCTCGACGCATCAAAG 59.080 55.000 8.37 0.00 42.61 2.77
744 759 0.244994 AGAGCTCGACGCATCAAAGT 59.755 50.000 8.37 0.00 42.61 2.66
745 760 0.368227 GAGCTCGACGCATCAAAGTG 59.632 55.000 0.00 0.00 42.61 3.16
746 761 0.038251 AGCTCGACGCATCAAAGTGA 60.038 50.000 9.09 0.00 42.61 3.41
749 764 1.590238 CTCGACGCATCAAAGTGATCC 59.410 52.381 0.00 0.00 34.28 3.36
750 765 1.204704 TCGACGCATCAAAGTGATCCT 59.795 47.619 0.00 0.00 34.28 3.24
751 766 2.002586 CGACGCATCAAAGTGATCCTT 58.997 47.619 0.00 0.00 34.28 3.36
752 767 2.222886 CGACGCATCAAAGTGATCCTTG 60.223 50.000 0.00 0.00 34.28 3.61
753 768 3.002791 GACGCATCAAAGTGATCCTTGA 58.997 45.455 4.91 4.91 34.28 3.02
754 769 3.411446 ACGCATCAAAGTGATCCTTGAA 58.589 40.909 6.19 0.00 34.28 2.69
757 772 3.129988 GCATCAAAGTGATCCTTGAAGGG 59.870 47.826 11.99 0.00 34.28 3.95
758 773 2.795329 TCAAAGTGATCCTTGAAGGGC 58.205 47.619 11.99 4.76 35.59 5.19
759 774 2.108075 TCAAAGTGATCCTTGAAGGGCA 59.892 45.455 11.99 7.47 35.59 5.36
760 775 2.206576 AAGTGATCCTTGAAGGGCAC 57.793 50.000 22.13 22.13 39.62 5.01
761 776 1.272147 AAGTGATCCTTGAAGGGCACC 60.272 52.381 24.37 13.13 39.93 5.01
762 777 4.547873 AAGTGATCCTTGAAGGGCACCC 62.548 54.545 24.37 0.00 40.55 4.61
774 789 2.031163 GCACCCGTGACTCAAGCT 59.969 61.111 0.00 0.00 0.00 3.74
776 791 1.669115 CACCCGTGACTCAAGCTGG 60.669 63.158 0.00 0.00 0.00 4.85
778 793 2.743928 CCGTGACTCAAGCTGGGC 60.744 66.667 0.00 0.00 0.00 5.36
779 794 3.114616 CGTGACTCAAGCTGGGCG 61.115 66.667 0.00 0.00 0.00 6.13
781 796 4.020617 TGACTCAAGCTGGGCGGG 62.021 66.667 0.00 0.00 0.00 6.13
784 799 3.801997 CTCAAGCTGGGCGGGGAT 61.802 66.667 0.00 0.00 0.00 3.85
785 800 4.113815 TCAAGCTGGGCGGGGATG 62.114 66.667 0.00 0.00 0.00 3.51
786 801 4.431131 CAAGCTGGGCGGGGATGT 62.431 66.667 0.00 0.00 0.00 3.06
787 802 2.690881 AAGCTGGGCGGGGATGTA 60.691 61.111 0.00 0.00 0.00 2.29
789 804 3.161450 GCTGGGCGGGGATGTAGA 61.161 66.667 0.00 0.00 0.00 2.59
790 805 2.520536 GCTGGGCGGGGATGTAGAT 61.521 63.158 0.00 0.00 0.00 1.98
791 806 1.372683 CTGGGCGGGGATGTAGATG 59.627 63.158 0.00 0.00 0.00 2.90
792 807 1.383943 TGGGCGGGGATGTAGATGT 60.384 57.895 0.00 0.00 0.00 3.06
793 808 0.105401 TGGGCGGGGATGTAGATGTA 60.105 55.000 0.00 0.00 0.00 2.29
794 809 0.320697 GGGCGGGGATGTAGATGTAC 59.679 60.000 0.00 0.00 0.00 2.90
795 810 0.320697 GGCGGGGATGTAGATGTACC 59.679 60.000 0.00 0.00 0.00 3.34
796 811 1.045407 GCGGGGATGTAGATGTACCA 58.955 55.000 0.00 0.00 0.00 3.25
798 813 2.805657 GCGGGGATGTAGATGTACCAAC 60.806 54.545 0.00 0.00 0.00 3.77
799 814 2.698797 CGGGGATGTAGATGTACCAACT 59.301 50.000 0.00 0.00 0.00 3.16
801 816 3.967987 GGGGATGTAGATGTACCAACTCT 59.032 47.826 0.00 0.00 0.00 3.24
802 817 5.145564 GGGGATGTAGATGTACCAACTCTA 58.854 45.833 0.00 0.00 0.00 2.43
804 819 6.270231 GGGGATGTAGATGTACCAACTCTAAT 59.730 42.308 0.00 0.00 0.00 1.73
806 821 7.202011 GGGATGTAGATGTACCAACTCTAATGT 60.202 40.741 0.00 0.00 0.00 2.71
807 822 7.868415 GGATGTAGATGTACCAACTCTAATGTC 59.132 40.741 0.00 0.00 0.00 3.06
808 823 7.108841 TGTAGATGTACCAACTCTAATGTCC 57.891 40.000 0.00 0.00 0.00 4.02
811 826 6.586344 AGATGTACCAACTCTAATGTCCATG 58.414 40.000 0.00 0.00 0.00 3.66
812 827 6.384015 AGATGTACCAACTCTAATGTCCATGA 59.616 38.462 0.00 0.00 0.00 3.07
813 828 5.977635 TGTACCAACTCTAATGTCCATGAG 58.022 41.667 0.00 0.00 0.00 2.90
814 829 5.719563 TGTACCAACTCTAATGTCCATGAGA 59.280 40.000 0.00 0.00 0.00 3.27
815 830 5.762179 ACCAACTCTAATGTCCATGAGAA 57.238 39.130 0.00 0.00 28.15 2.87
816 831 5.738909 ACCAACTCTAATGTCCATGAGAAG 58.261 41.667 0.00 0.00 28.15 2.85
817 832 4.574013 CCAACTCTAATGTCCATGAGAAGC 59.426 45.833 0.00 0.00 28.15 3.86
818 833 5.426504 CAACTCTAATGTCCATGAGAAGCT 58.573 41.667 0.00 0.00 28.15 3.74
821 836 3.776969 TCTAATGTCCATGAGAAGCTGGT 59.223 43.478 0.00 0.00 34.03 4.00
822 837 2.414994 ATGTCCATGAGAAGCTGGTG 57.585 50.000 0.00 0.00 34.03 4.17
824 839 0.393537 GTCCATGAGAAGCTGGTGGG 60.394 60.000 0.00 0.00 34.03 4.61
825 840 0.842030 TCCATGAGAAGCTGGTGGGT 60.842 55.000 0.00 0.00 34.03 4.51
826 841 0.393537 CCATGAGAAGCTGGTGGGTC 60.394 60.000 0.00 0.00 0.00 4.46
827 842 0.325933 CATGAGAAGCTGGTGGGTCA 59.674 55.000 0.00 0.00 0.00 4.02
828 843 1.067295 ATGAGAAGCTGGTGGGTCAA 58.933 50.000 0.00 0.00 0.00 3.18
830 845 1.425066 TGAGAAGCTGGTGGGTCAAAT 59.575 47.619 0.00 0.00 0.00 2.32
831 846 2.642311 TGAGAAGCTGGTGGGTCAAATA 59.358 45.455 0.00 0.00 0.00 1.40
833 848 1.745653 GAAGCTGGTGGGTCAAATAGC 59.254 52.381 0.00 0.00 0.00 2.97
835 850 1.355720 AGCTGGTGGGTCAAATAGCTT 59.644 47.619 0.00 0.00 38.24 3.74
836 851 2.576191 AGCTGGTGGGTCAAATAGCTTA 59.424 45.455 0.00 0.00 38.24 3.09
837 852 2.683362 GCTGGTGGGTCAAATAGCTTAC 59.317 50.000 0.00 0.00 0.00 2.34
944 962 1.419374 GTGTACTCGCACTTGTCCTG 58.581 55.000 0.00 0.00 36.51 3.86
1205 1489 3.330720 CTCCAAGGTCCGCCCCTT 61.331 66.667 0.00 0.00 45.85 3.95
1223 1508 2.107366 CTTCCTCACCCCTTCTCTCTC 58.893 57.143 0.00 0.00 0.00 3.20
1311 1596 2.224885 GCTCGTTCGTGCTCGATCC 61.225 63.158 12.14 5.12 45.65 3.36
1344 1629 1.743772 CGATTGCCTGATTCCGTTCCT 60.744 52.381 0.00 0.00 0.00 3.36
1353 1638 1.677637 ATTCCGTTCCTCGAGGGCTC 61.678 60.000 30.80 18.92 42.86 4.70
1383 1691 3.064820 GTGTTCTGTTAGGTGGTTGTGTG 59.935 47.826 0.00 0.00 0.00 3.82
1384 1692 3.275999 GTTCTGTTAGGTGGTTGTGTGT 58.724 45.455 0.00 0.00 0.00 3.72
1385 1693 4.081031 TGTTCTGTTAGGTGGTTGTGTGTA 60.081 41.667 0.00 0.00 0.00 2.90
1386 1694 4.967084 TCTGTTAGGTGGTTGTGTGTAT 57.033 40.909 0.00 0.00 0.00 2.29
1387 1695 5.298989 TCTGTTAGGTGGTTGTGTGTATT 57.701 39.130 0.00 0.00 0.00 1.89
1388 1696 5.686753 TCTGTTAGGTGGTTGTGTGTATTT 58.313 37.500 0.00 0.00 0.00 1.40
1389 1697 6.123651 TCTGTTAGGTGGTTGTGTGTATTTT 58.876 36.000 0.00 0.00 0.00 1.82
1390 1698 6.261381 TCTGTTAGGTGGTTGTGTGTATTTTC 59.739 38.462 0.00 0.00 0.00 2.29
1393 1701 4.394729 AGGTGGTTGTGTGTATTTTCGAT 58.605 39.130 0.00 0.00 0.00 3.59
1394 1702 4.215399 AGGTGGTTGTGTGTATTTTCGATG 59.785 41.667 0.00 0.00 0.00 3.84
1395 1703 4.472286 GTGGTTGTGTGTATTTTCGATGG 58.528 43.478 0.00 0.00 0.00 3.51
1396 1704 4.023536 GTGGTTGTGTGTATTTTCGATGGT 60.024 41.667 0.00 0.00 0.00 3.55
1411 1719 9.939802 ATTTTCGATGGTTTTACTTAGACTACT 57.060 29.630 0.00 0.00 0.00 2.57
1412 1720 9.768662 TTTTCGATGGTTTTACTTAGACTACTT 57.231 29.630 0.00 0.00 0.00 2.24
1505 1961 2.671276 TTTGCGCTGGCCGATTGA 60.671 55.556 9.73 0.00 40.02 2.57
1721 2177 2.580966 TACGTTTGGTTTGGTTTGCC 57.419 45.000 0.00 0.00 0.00 4.52
1733 2189 2.037901 TGGTTTGCCAATCTGCTTCAA 58.962 42.857 0.00 0.00 42.83 2.69
1781 2237 5.086104 TGACTAAAGGAATGCTCAGTACC 57.914 43.478 0.00 0.00 0.00 3.34
1784 2241 5.735766 ACTAAAGGAATGCTCAGTACCTTC 58.264 41.667 0.00 0.00 39.59 3.46
1795 2252 5.048434 TGCTCAGTACCTTCGAGATATCATG 60.048 44.000 5.32 0.00 0.00 3.07
1807 2264 7.872113 TCGAGATATCATGTCACTATGCTAT 57.128 36.000 5.32 0.00 0.00 2.97
1838 2295 3.535561 ACACGGGAGATTTCTGCTAATG 58.464 45.455 0.00 0.00 34.50 1.90
1954 2413 9.567848 TTTTTCTATTGCCGATGAAAAAGATAC 57.432 29.630 0.00 0.00 40.88 2.24
1959 2418 5.295431 TGCCGATGAAAAAGATACAACTG 57.705 39.130 0.00 0.00 0.00 3.16
2212 2694 6.556639 AGAGTAGGATTCTAGATGCATGGTA 58.443 40.000 2.46 0.00 0.00 3.25
2318 2800 8.033626 TGATCAGTCATCATTGATATCTAGCAC 58.966 37.037 3.98 0.00 36.51 4.40
2324 2806 7.483375 GTCATCATTGATATCTAGCACGTACTC 59.517 40.741 3.98 0.00 33.56 2.59
2425 2911 4.102035 TGACTGATCAGTGATCACTTCG 57.898 45.455 32.50 21.05 43.11 3.79
2470 2964 8.739972 AGAACTTTCTGTACTTGTTGTGAAATT 58.260 29.630 0.00 0.00 35.89 1.82
2471 2965 8.911247 AACTTTCTGTACTTGTTGTGAAATTC 57.089 30.769 0.00 0.00 0.00 2.17
2472 2966 8.050778 ACTTTCTGTACTTGTTGTGAAATTCA 57.949 30.769 0.00 0.00 0.00 2.57
2473 2967 8.686334 ACTTTCTGTACTTGTTGTGAAATTCAT 58.314 29.630 0.00 0.00 0.00 2.57
2474 2968 9.520204 CTTTCTGTACTTGTTGTGAAATTCATT 57.480 29.630 0.00 0.00 0.00 2.57
2475 2969 8.854979 TTCTGTACTTGTTGTGAAATTCATTG 57.145 30.769 0.00 0.00 0.00 2.82
2476 2970 7.995289 TCTGTACTTGTTGTGAAATTCATTGT 58.005 30.769 0.00 0.00 0.00 2.71
2477 2971 8.128582 TCTGTACTTGTTGTGAAATTCATTGTC 58.871 33.333 0.00 0.00 0.00 3.18
2478 2972 7.766283 TGTACTTGTTGTGAAATTCATTGTCA 58.234 30.769 0.00 0.00 0.00 3.58
2479 2973 8.246871 TGTACTTGTTGTGAAATTCATTGTCAA 58.753 29.630 0.00 0.00 0.00 3.18
2480 2974 9.081997 GTACTTGTTGTGAAATTCATTGTCAAA 57.918 29.630 0.00 0.00 0.00 2.69
2481 2975 8.545229 ACTTGTTGTGAAATTCATTGTCAAAA 57.455 26.923 0.00 0.00 0.00 2.44
2523 3017 3.382546 GGTATTCATTGATGCTGCCAACT 59.617 43.478 0.00 0.00 0.00 3.16
2537 3031 8.746052 ATGCTGCCAACTTTGTACTATTATTA 57.254 30.769 0.00 0.00 0.00 0.98
2579 3073 3.812262 TGCCAACATGAGATAGGATGTG 58.188 45.455 0.00 0.00 33.03 3.21
2588 3082 6.551227 ACATGAGATAGGATGTGCTAGTTGTA 59.449 38.462 0.00 0.00 31.47 2.41
2667 3161 3.398318 TCCCTAGTGCATGGAGAACTA 57.602 47.619 0.00 0.00 0.00 2.24
2704 3199 6.258727 CGGAACTATAACTGTCATCTTGCATT 59.741 38.462 0.00 0.00 0.00 3.56
2736 3231 5.758784 GGGAATATTGTAGTACAGTTCTGCC 59.241 44.000 17.36 10.93 0.00 4.85
2889 3387 8.747538 TTATGAGTCTGCTCTATGTAGTTACA 57.252 34.615 0.00 0.00 42.13 2.41
2926 3424 6.872920 TGATGAAAGGCCAAAATACCAATAC 58.127 36.000 5.01 0.00 0.00 1.89
3057 3555 7.721402 TCTCTTCTTCAGTTTATCAGCCTATC 58.279 38.462 0.00 0.00 0.00 2.08
3563 5047 3.682155 GCATCAGCACTTCTCTCCTGATT 60.682 47.826 0.00 0.00 41.65 2.57
3717 5201 7.330946 CGATGGTGTACTTTGATCTGTTCTAAA 59.669 37.037 0.00 0.00 0.00 1.85
3735 5219 2.938956 AATGCCTCCATGGTAGTAGC 57.061 50.000 12.58 9.20 38.35 3.58
3786 5270 5.905331 TCCCATCTGTACACTGGAATAATCT 59.095 40.000 17.61 0.00 31.38 2.40
3788 5272 7.056635 CCCATCTGTACACTGGAATAATCTTT 58.943 38.462 17.61 0.00 31.38 2.52
3928 5412 7.911205 CAGTTGTCACAGAGTACTAGCTTATAC 59.089 40.741 0.00 0.00 0.00 1.47
4067 5568 3.424433 GCAAGTGTTATCGGTGTTGTAGC 60.424 47.826 0.00 0.00 0.00 3.58
4096 5597 3.817084 CAGTCTGTTTGGAGCATGAAAGA 59.183 43.478 0.00 0.00 0.00 2.52
4099 5600 2.886523 CTGTTTGGAGCATGAAAGACCA 59.113 45.455 0.00 0.00 0.00 4.02
4111 5612 0.102300 AAAGACCACGTTGCCTTTGC 59.898 50.000 0.07 0.00 38.26 3.68
4138 5639 1.873903 GCCATCAGCAGGTACCATACG 60.874 57.143 15.94 0.17 42.97 3.06
4153 5659 3.385111 ACCATACGAATCTTCCAGGTCTC 59.615 47.826 0.00 0.00 0.00 3.36
4155 5661 0.818296 ACGAATCTTCCAGGTCTCGG 59.182 55.000 0.00 0.00 0.00 4.63
4169 5675 3.039202 CTCGGTTCCGTTGCATGCC 62.039 63.158 16.68 0.00 0.00 4.40
4172 5678 2.268076 GGTTCCGTTGCATGCCTGT 61.268 57.895 16.68 0.00 0.00 4.00
4175 5681 0.821301 TTCCGTTGCATGCCTGTGAA 60.821 50.000 16.68 10.23 0.00 3.18
4216 5722 2.102084 TGACCAGCAGCTGATAGATGAC 59.898 50.000 24.90 6.78 32.38 3.06
4266 5772 4.025015 GCATGTTTGCTCAGGTATCAAG 57.975 45.455 0.00 0.00 45.77 3.02
4323 5870 2.288030 GCATATGCAGTGGATTCTTGGC 60.288 50.000 22.84 0.00 41.59 4.52
4325 5872 4.392047 CATATGCAGTGGATTCTTGGCTA 58.608 43.478 1.20 0.00 0.00 3.93
4326 5873 2.408271 TGCAGTGGATTCTTGGCTAG 57.592 50.000 0.00 0.00 0.00 3.42
4327 5874 1.630369 TGCAGTGGATTCTTGGCTAGT 59.370 47.619 0.00 0.00 0.00 2.57
4330 5877 3.012518 CAGTGGATTCTTGGCTAGTTGG 58.987 50.000 0.00 0.00 0.00 3.77
4331 5878 1.745653 GTGGATTCTTGGCTAGTTGGC 59.254 52.381 0.00 0.00 42.18 4.52
4335 5882 4.263727 TGGATTCTTGGCTAGTTGGCTTTA 60.264 41.667 0.00 0.00 42.34 1.85
4339 5886 4.270008 TCTTGGCTAGTTGGCTTTATTCC 58.730 43.478 0.00 0.00 42.34 3.01
4340 5887 2.639065 TGGCTAGTTGGCTTTATTCCG 58.361 47.619 0.00 0.00 42.34 4.30
4345 5892 4.632688 GCTAGTTGGCTTTATTCCGTTACA 59.367 41.667 0.00 0.00 0.00 2.41
4346 5893 5.296035 GCTAGTTGGCTTTATTCCGTTACAT 59.704 40.000 0.00 0.00 0.00 2.29
4347 5894 5.813080 AGTTGGCTTTATTCCGTTACATC 57.187 39.130 0.00 0.00 0.00 3.06
4348 5895 4.331717 AGTTGGCTTTATTCCGTTACATCG 59.668 41.667 0.00 0.00 0.00 3.84
4349 5896 3.864243 TGGCTTTATTCCGTTACATCGT 58.136 40.909 0.00 0.00 0.00 3.73
4350 5897 3.866910 TGGCTTTATTCCGTTACATCGTC 59.133 43.478 0.00 0.00 0.00 4.20
4353 5991 5.432157 GCTTTATTCCGTTACATCGTCATG 58.568 41.667 0.00 0.00 35.92 3.07
4366 6004 4.202295 ACATCGTCATGATCCTTGCTACAT 60.202 41.667 0.00 0.00 34.13 2.29
4369 6007 5.473039 TCGTCATGATCCTTGCTACATATG 58.527 41.667 0.00 0.00 0.00 1.78
4370 6008 5.243730 TCGTCATGATCCTTGCTACATATGA 59.756 40.000 10.38 0.00 0.00 2.15
4371 6009 5.347093 CGTCATGATCCTTGCTACATATGAC 59.653 44.000 10.38 0.00 39.60 3.06
4372 6010 6.226052 GTCATGATCCTTGCTACATATGACA 58.774 40.000 10.38 1.69 41.49 3.58
4373 6011 6.877855 GTCATGATCCTTGCTACATATGACAT 59.122 38.462 10.38 0.00 41.49 3.06
4374 6012 8.037166 GTCATGATCCTTGCTACATATGACATA 58.963 37.037 10.38 0.00 41.49 2.29
4375 6013 8.765517 TCATGATCCTTGCTACATATGACATAT 58.234 33.333 10.38 1.87 0.00 1.78
4417 6055 7.842887 ATCCTTACTACTCCCTTTAGTGATC 57.157 40.000 0.00 0.00 31.99 2.92
4463 6101 7.490657 TTACAGAGGGAGTACATGTGTAAAT 57.509 36.000 9.11 0.00 31.52 1.40
4465 6103 7.490657 ACAGAGGGAGTACATGTGTAAATAA 57.509 36.000 9.11 0.00 31.52 1.40
4473 6111 9.216117 GGAGTACATGTGTAAATAAACTCAAGT 57.784 33.333 18.16 0.00 31.92 3.16
4485 6123 2.802787 ACTCAAGTTGACAGTCTCCG 57.197 50.000 0.08 0.00 0.00 4.63
4493 6131 0.622136 TGACAGTCTCCGGCTAGGTA 59.378 55.000 0.00 0.00 41.99 3.08
4495 6133 0.747283 ACAGTCTCCGGCTAGGTACG 60.747 60.000 0.00 0.00 41.99 3.67
4503 6141 3.550820 TCCGGCTAGGTACGTAATGTAA 58.449 45.455 0.00 0.00 41.99 2.41
4508 6207 5.571741 CGGCTAGGTACGTAATGTAATGATG 59.428 44.000 0.00 0.00 34.07 3.07
4517 6216 9.849607 GTACGTAATGTAATGATGAGTCAATTG 57.150 33.333 0.00 0.00 38.01 2.32
4524 6223 8.164058 TGTAATGATGAGTCAATTGTTCACAA 57.836 30.769 14.55 0.00 38.01 3.33
4528 6227 6.272318 TGATGAGTCAATTGTTCACAAAACC 58.728 36.000 14.55 4.88 39.55 3.27
4531 6230 6.098679 TGAGTCAATTGTTCACAAAACCTTG 58.901 36.000 5.13 0.00 39.55 3.61
4534 6233 5.290885 GTCAATTGTTCACAAAACCTTGGTC 59.709 40.000 5.13 0.00 39.55 4.02
4554 6253 3.130693 GTCTAGTTACCATCCGCAGTTCT 59.869 47.826 0.00 0.00 0.00 3.01
4555 6254 3.767673 TCTAGTTACCATCCGCAGTTCTT 59.232 43.478 0.00 0.00 0.00 2.52
4565 6264 6.377146 ACCATCCGCAGTTCTTAATATGTTTT 59.623 34.615 0.00 0.00 0.00 2.43
4568 6267 4.798387 CCGCAGTTCTTAATATGTTTTGGC 59.202 41.667 0.00 0.00 0.00 4.52
4623 6322 6.051717 TCTCTGAAGTTCTGAACCTTTGAAG 58.948 40.000 16.48 8.14 0.00 3.02
4624 6323 5.745227 TCTGAAGTTCTGAACCTTTGAAGT 58.255 37.500 16.48 0.00 0.00 3.01
4625 6324 6.180472 TCTGAAGTTCTGAACCTTTGAAGTT 58.820 36.000 16.48 2.32 36.44 2.66
4626 6325 6.659242 TCTGAAGTTCTGAACCTTTGAAGTTT 59.341 34.615 16.48 1.62 34.64 2.66
4627 6326 6.620678 TGAAGTTCTGAACCTTTGAAGTTTG 58.379 36.000 16.48 0.00 34.64 2.93
4628 6327 6.432783 TGAAGTTCTGAACCTTTGAAGTTTGA 59.567 34.615 16.48 0.00 34.64 2.69
4629 6328 6.834168 AGTTCTGAACCTTTGAAGTTTGAA 57.166 33.333 16.48 0.00 0.00 2.69
4654 6353 7.583860 CATGAATTATGTGCATGTTTTGTGA 57.416 32.000 0.00 0.00 35.78 3.58
4659 6358 9.357652 GAATTATGTGCATGTTTTGTGATAGTT 57.642 29.630 0.00 0.00 0.00 2.24
4665 6364 9.619316 TGTGCATGTTTTGTGATAGTTAAATAC 57.381 29.630 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.790814 GAGACCAACTACGCACAAGC 59.209 55.000 0.00 0.00 37.42 4.01
28 29 0.318360 CACGAGACCAACTACGCACA 60.318 55.000 0.00 0.00 0.00 4.57
61 62 7.536281 TGAATAAACGAATCTATGTCGATACCG 59.464 37.037 0.18 0.00 41.02 4.02
99 100 3.589061 TTTACACGCACGGTTTAAGTG 57.411 42.857 0.00 0.00 42.15 3.16
116 117 4.156922 ACCGTGGAAATGATTTGCGATTTA 59.843 37.500 4.98 0.00 33.22 1.40
137 138 3.486383 TCTCAACACAGGAAATCCAACC 58.514 45.455 1.67 0.00 38.89 3.77
148 149 6.382608 TCTAGTTTCGAAGATCTCAACACAG 58.617 40.000 0.00 0.29 35.04 3.66
149 150 6.327279 TCTAGTTTCGAAGATCTCAACACA 57.673 37.500 0.00 0.00 35.04 3.72
169 170 9.489084 CATCGAAACCTATTAATGTTGGATCTA 57.511 33.333 0.00 0.00 0.00 1.98
178 179 9.289303 CCAAAAGTTCATCGAAACCTATTAATG 57.711 33.333 0.00 0.00 0.00 1.90
302 306 1.991121 ACTTCGTGTGGAGGTACAGA 58.009 50.000 0.00 0.00 32.44 3.41
303 307 3.928727 TTACTTCGTGTGGAGGTACAG 57.071 47.619 0.00 0.00 37.00 2.74
326 330 3.462483 TTTCTTACACGAGAGGCACAA 57.538 42.857 0.00 0.00 0.00 3.33
327 331 3.462483 TTTTCTTACACGAGAGGCACA 57.538 42.857 0.00 0.00 0.00 4.57
351 355 3.516700 CCTCCCAGAAAGGAAAAATGCAT 59.483 43.478 0.00 0.00 41.22 3.96
353 357 2.899900 ACCTCCCAGAAAGGAAAAATGC 59.100 45.455 0.00 0.00 41.22 3.56
354 358 5.076873 TGTACCTCCCAGAAAGGAAAAATG 58.923 41.667 0.00 0.00 41.22 2.32
355 359 5.333566 TGTACCTCCCAGAAAGGAAAAAT 57.666 39.130 0.00 0.00 41.22 1.82
356 360 4.799715 TGTACCTCCCAGAAAGGAAAAA 57.200 40.909 0.00 0.00 41.22 1.94
367 371 1.072266 AGGCACAATTGTACCTCCCA 58.928 50.000 22.57 0.00 37.20 4.37
368 372 3.978876 AGGCACAATTGTACCTCCC 57.021 52.632 22.57 12.37 37.20 4.30
377 381 6.127479 TGTTTACTTTCACAAGAGGCACAATT 60.127 34.615 0.00 0.00 33.72 2.32
378 382 5.359576 TGTTTACTTTCACAAGAGGCACAAT 59.640 36.000 0.00 0.00 33.72 2.71
379 383 4.702612 TGTTTACTTTCACAAGAGGCACAA 59.297 37.500 0.00 0.00 33.72 3.33
382 386 4.887071 ACATGTTTACTTTCACAAGAGGCA 59.113 37.500 0.00 0.00 33.72 4.75
383 387 5.215160 CACATGTTTACTTTCACAAGAGGC 58.785 41.667 0.00 0.00 33.72 4.70
385 389 5.009010 AGGCACATGTTTACTTTCACAAGAG 59.991 40.000 0.00 0.00 33.72 2.85
388 392 4.037446 GGAGGCACATGTTTACTTTCACAA 59.963 41.667 0.00 0.00 0.00 3.33
389 393 3.568007 GGAGGCACATGTTTACTTTCACA 59.432 43.478 0.00 0.00 0.00 3.58
390 394 3.568007 TGGAGGCACATGTTTACTTTCAC 59.432 43.478 0.00 0.00 0.00 3.18
391 395 3.568007 GTGGAGGCACATGTTTACTTTCA 59.432 43.478 0.00 0.00 0.00 2.69
392 396 3.364964 CGTGGAGGCACATGTTTACTTTC 60.365 47.826 0.00 0.00 0.00 2.62
394 398 2.151202 CGTGGAGGCACATGTTTACTT 58.849 47.619 0.00 0.00 0.00 2.24
395 399 1.346395 TCGTGGAGGCACATGTTTACT 59.654 47.619 0.00 0.00 0.00 2.24
397 401 1.621317 TCTCGTGGAGGCACATGTTTA 59.379 47.619 0.00 0.00 0.00 2.01
431 435 8.516639 AAAACGTGTTTTCTCTTTCGCGAGAA 62.517 38.462 9.59 6.67 45.54 2.87
499 514 3.334691 CGATAGGCACACTCAAAAAGGA 58.665 45.455 0.00 0.00 0.00 3.36
506 521 0.245266 TTTCGCGATAGGCACACTCA 59.755 50.000 10.88 0.00 43.84 3.41
514 529 4.788100 CACAAGTTTCATTTTCGCGATAGG 59.212 41.667 10.88 2.97 0.00 2.57
521 536 5.168526 TGGAGACACAAGTTTCATTTTCG 57.831 39.130 0.00 0.00 33.40 3.46
544 559 1.725931 GCGGCACAGATTTGTTTCTCG 60.726 52.381 0.00 0.00 34.62 4.04
546 561 1.537202 GAGCGGCACAGATTTGTTTCT 59.463 47.619 1.45 0.00 34.62 2.52
562 577 1.318251 CTTTTCTTTTTCCGCGAGCG 58.682 50.000 8.23 10.86 39.44 5.03
565 580 3.363341 AATGCTTTTCTTTTTCCGCGA 57.637 38.095 8.23 0.00 0.00 5.87
601 616 3.556423 GCTCGGTTTTCTCTAGGTTTGGA 60.556 47.826 0.00 0.00 0.00 3.53
603 618 3.399330 TGCTCGGTTTTCTCTAGGTTTG 58.601 45.455 0.00 0.00 0.00 2.93
619 634 2.357637 TCAGGTTTTTGGTTTCTGCTCG 59.642 45.455 0.00 0.00 0.00 5.03
625 640 4.580868 TGGGTTTTCAGGTTTTTGGTTTC 58.419 39.130 0.00 0.00 0.00 2.78
665 680 8.956426 CCTTGGGATATTATTATATTTGTGCGT 58.044 33.333 0.00 0.00 0.00 5.24
666 681 9.173021 TCCTTGGGATATTATTATATTTGTGCG 57.827 33.333 0.00 0.00 0.00 5.34
674 689 8.674173 TGGCTGTTTCCTTGGGATATTATTATA 58.326 33.333 0.00 0.00 0.00 0.98
675 690 7.534852 TGGCTGTTTCCTTGGGATATTATTAT 58.465 34.615 0.00 0.00 0.00 1.28
676 691 6.916909 TGGCTGTTTCCTTGGGATATTATTA 58.083 36.000 0.00 0.00 0.00 0.98
677 692 5.776358 TGGCTGTTTCCTTGGGATATTATT 58.224 37.500 0.00 0.00 0.00 1.40
679 694 4.871871 TGGCTGTTTCCTTGGGATATTA 57.128 40.909 0.00 0.00 0.00 0.98
680 695 3.756082 TGGCTGTTTCCTTGGGATATT 57.244 42.857 0.00 0.00 0.00 1.28
682 697 2.580322 TGATGGCTGTTTCCTTGGGATA 59.420 45.455 0.00 0.00 0.00 2.59
683 698 1.358787 TGATGGCTGTTTCCTTGGGAT 59.641 47.619 0.00 0.00 0.00 3.85
684 699 0.776810 TGATGGCTGTTTCCTTGGGA 59.223 50.000 0.00 0.00 0.00 4.37
685 700 0.890683 GTGATGGCTGTTTCCTTGGG 59.109 55.000 0.00 0.00 0.00 4.12
686 701 0.523072 CGTGATGGCTGTTTCCTTGG 59.477 55.000 0.00 0.00 0.00 3.61
687 702 0.109597 GCGTGATGGCTGTTTCCTTG 60.110 55.000 0.00 0.00 0.00 3.61
690 705 1.369091 ATCGCGTGATGGCTGTTTCC 61.369 55.000 11.39 0.00 32.21 3.13
691 706 1.286501 TATCGCGTGATGGCTGTTTC 58.713 50.000 21.46 0.00 35.99 2.78
692 707 1.953559 ATATCGCGTGATGGCTGTTT 58.046 45.000 21.46 0.00 35.99 2.83
694 709 2.610433 CATATATCGCGTGATGGCTGT 58.390 47.619 21.46 5.06 35.99 4.40
695 710 1.929169 CCATATATCGCGTGATGGCTG 59.071 52.381 21.46 13.91 35.99 4.85
696 711 1.134699 CCCATATATCGCGTGATGGCT 60.135 52.381 21.46 8.49 38.01 4.75
697 712 1.290203 CCCATATATCGCGTGATGGC 58.710 55.000 21.46 0.00 38.01 4.40
698 713 1.290203 GCCCATATATCGCGTGATGG 58.710 55.000 21.46 14.84 38.89 3.51
699 714 0.923403 CGCCCATATATCGCGTGATG 59.077 55.000 21.46 6.02 40.99 3.07
700 715 3.345737 CGCCCATATATCGCGTGAT 57.654 52.632 16.83 16.83 40.99 3.06
701 716 4.880899 CGCCCATATATCGCGTGA 57.119 55.556 5.77 0.00 40.99 4.35
705 720 1.134367 TCAGCTACGCCCATATATCGC 59.866 52.381 0.00 0.00 0.00 4.58
706 721 2.683362 TCTCAGCTACGCCCATATATCG 59.317 50.000 0.00 0.00 0.00 2.92
708 723 2.428890 GCTCTCAGCTACGCCCATATAT 59.571 50.000 0.00 0.00 38.45 0.86
709 724 1.819288 GCTCTCAGCTACGCCCATATA 59.181 52.381 0.00 0.00 38.45 0.86
711 726 2.041976 GCTCTCAGCTACGCCCATA 58.958 57.895 0.00 0.00 38.45 2.74
729 744 1.590238 GGATCACTTTGATGCGTCGAG 59.410 52.381 0.58 4.61 37.20 4.04
730 745 1.640428 GGATCACTTTGATGCGTCGA 58.360 50.000 0.58 0.00 37.20 4.20
735 750 3.129988 CCCTTCAAGGATCACTTTGATGC 59.870 47.826 4.43 0.00 44.29 3.91
736 751 3.129988 GCCCTTCAAGGATCACTTTGATG 59.870 47.826 4.43 8.93 40.70 3.07
737 752 3.245371 TGCCCTTCAAGGATCACTTTGAT 60.245 43.478 4.43 0.00 40.70 2.57
738 753 2.108075 TGCCCTTCAAGGATCACTTTGA 59.892 45.455 4.43 0.00 37.67 2.69
741 756 1.272147 GGTGCCCTTCAAGGATCACTT 60.272 52.381 21.01 0.00 37.67 3.16
742 757 0.329596 GGTGCCCTTCAAGGATCACT 59.670 55.000 21.01 0.00 37.67 3.41
743 758 0.681243 GGGTGCCCTTCAAGGATCAC 60.681 60.000 4.43 12.23 37.67 3.06
744 759 1.691219 GGGTGCCCTTCAAGGATCA 59.309 57.895 4.43 0.00 37.67 2.92
745 760 1.452108 CGGGTGCCCTTCAAGGATC 60.452 63.158 4.43 0.00 37.67 3.36
746 761 2.231380 ACGGGTGCCCTTCAAGGAT 61.231 57.895 4.43 0.00 37.67 3.24
749 764 1.966451 GTCACGGGTGCCCTTCAAG 60.966 63.158 5.64 0.00 0.00 3.02
750 765 2.112297 GTCACGGGTGCCCTTCAA 59.888 61.111 5.64 0.00 0.00 2.69
751 766 2.847234 AGTCACGGGTGCCCTTCA 60.847 61.111 5.64 0.00 0.00 3.02
752 767 2.047179 GAGTCACGGGTGCCCTTC 60.047 66.667 5.64 0.00 0.00 3.46
753 768 2.397413 CTTGAGTCACGGGTGCCCTT 62.397 60.000 5.64 0.00 0.00 3.95
754 769 2.847234 TTGAGTCACGGGTGCCCT 60.847 61.111 5.64 0.00 0.00 5.19
757 772 2.031163 AGCTTGAGTCACGGGTGC 59.969 61.111 0.00 0.00 0.00 5.01
758 773 1.669115 CCAGCTTGAGTCACGGGTG 60.669 63.158 14.12 14.12 0.00 4.61
759 774 2.743718 CCAGCTTGAGTCACGGGT 59.256 61.111 0.00 0.00 0.00 5.28
760 775 2.046892 CCCAGCTTGAGTCACGGG 60.047 66.667 0.00 0.00 0.00 5.28
761 776 2.743928 GCCCAGCTTGAGTCACGG 60.744 66.667 0.00 0.00 0.00 4.94
762 777 3.114616 CGCCCAGCTTGAGTCACG 61.115 66.667 0.00 0.00 0.00 4.35
763 778 2.743928 CCGCCCAGCTTGAGTCAC 60.744 66.667 0.00 0.00 0.00 3.67
764 779 4.020617 CCCGCCCAGCTTGAGTCA 62.021 66.667 0.00 0.00 0.00 3.41
765 780 4.785453 CCCCGCCCAGCTTGAGTC 62.785 72.222 0.00 0.00 0.00 3.36
768 783 4.113815 CATCCCCGCCCAGCTTGA 62.114 66.667 0.00 0.00 0.00 3.02
769 784 2.947938 CTACATCCCCGCCCAGCTTG 62.948 65.000 0.00 0.00 0.00 4.01
770 785 2.690881 TACATCCCCGCCCAGCTT 60.691 61.111 0.00 0.00 0.00 3.74
771 786 2.972589 ATCTACATCCCCGCCCAGCT 62.973 60.000 0.00 0.00 0.00 4.24
772 787 2.520536 ATCTACATCCCCGCCCAGC 61.521 63.158 0.00 0.00 0.00 4.85
774 789 0.105401 TACATCTACATCCCCGCCCA 60.105 55.000 0.00 0.00 0.00 5.36
776 791 0.320697 GGTACATCTACATCCCCGCC 59.679 60.000 0.00 0.00 0.00 6.13
778 793 2.698797 AGTTGGTACATCTACATCCCCG 59.301 50.000 0.00 0.00 36.51 5.73
779 794 3.967987 AGAGTTGGTACATCTACATCCCC 59.032 47.826 0.00 0.00 38.66 4.81
781 796 7.727181 ACATTAGAGTTGGTACATCTACATCC 58.273 38.462 0.00 0.00 38.66 3.51
783 798 7.344612 TGGACATTAGAGTTGGTACATCTACAT 59.655 37.037 0.00 0.00 38.66 2.29
784 799 6.666113 TGGACATTAGAGTTGGTACATCTACA 59.334 38.462 0.00 0.00 38.66 2.74
785 800 7.108841 TGGACATTAGAGTTGGTACATCTAC 57.891 40.000 0.00 0.00 38.66 2.59
786 801 7.563556 TCATGGACATTAGAGTTGGTACATCTA 59.436 37.037 0.00 0.00 38.66 1.98
787 802 6.384015 TCATGGACATTAGAGTTGGTACATCT 59.616 38.462 0.00 0.00 41.61 2.90
789 804 6.384015 TCTCATGGACATTAGAGTTGGTACAT 59.616 38.462 0.00 0.00 39.30 2.29
790 805 5.719563 TCTCATGGACATTAGAGTTGGTACA 59.280 40.000 0.00 0.00 0.00 2.90
791 806 6.222038 TCTCATGGACATTAGAGTTGGTAC 57.778 41.667 0.00 0.00 0.00 3.34
792 807 6.630413 GCTTCTCATGGACATTAGAGTTGGTA 60.630 42.308 0.00 0.00 0.00 3.25
793 808 5.738909 CTTCTCATGGACATTAGAGTTGGT 58.261 41.667 0.00 0.00 0.00 3.67
794 809 4.574013 GCTTCTCATGGACATTAGAGTTGG 59.426 45.833 0.00 0.00 0.00 3.77
795 810 5.293814 CAGCTTCTCATGGACATTAGAGTTG 59.706 44.000 0.00 0.00 0.00 3.16
796 811 5.426504 CAGCTTCTCATGGACATTAGAGTT 58.573 41.667 0.00 0.00 0.00 3.01
798 813 4.141756 ACCAGCTTCTCATGGACATTAGAG 60.142 45.833 0.00 0.00 39.02 2.43
799 814 3.776969 ACCAGCTTCTCATGGACATTAGA 59.223 43.478 0.00 0.00 39.02 2.10
801 816 3.370846 CCACCAGCTTCTCATGGACATTA 60.371 47.826 0.00 0.00 39.02 1.90
802 817 2.619849 CCACCAGCTTCTCATGGACATT 60.620 50.000 0.00 0.00 39.02 2.71
804 819 0.325933 CCACCAGCTTCTCATGGACA 59.674 55.000 0.00 0.00 39.02 4.02
806 821 0.842030 ACCCACCAGCTTCTCATGGA 60.842 55.000 0.00 0.00 39.02 3.41
807 822 0.393537 GACCCACCAGCTTCTCATGG 60.394 60.000 0.00 0.00 42.60 3.66
808 823 0.325933 TGACCCACCAGCTTCTCATG 59.674 55.000 0.00 0.00 0.00 3.07
811 826 2.206576 ATTTGACCCACCAGCTTCTC 57.793 50.000 0.00 0.00 0.00 2.87
812 827 2.619074 GCTATTTGACCCACCAGCTTCT 60.619 50.000 0.00 0.00 0.00 2.85
813 828 1.745653 GCTATTTGACCCACCAGCTTC 59.254 52.381 0.00 0.00 0.00 3.86
814 829 1.355720 AGCTATTTGACCCACCAGCTT 59.644 47.619 0.00 0.00 35.94 3.74
815 830 0.995024 AGCTATTTGACCCACCAGCT 59.005 50.000 0.00 0.00 34.63 4.24
816 831 1.839424 AAGCTATTTGACCCACCAGC 58.161 50.000 0.00 0.00 0.00 4.85
817 832 3.279434 GGTAAGCTATTTGACCCACCAG 58.721 50.000 0.00 0.00 0.00 4.00
818 833 3.359695 GGTAAGCTATTTGACCCACCA 57.640 47.619 0.00 0.00 0.00 4.17
833 848 2.584608 CGGGTCAGGCTGGGTAAG 59.415 66.667 15.73 0.00 0.00 2.34
952 970 3.500471 GGGAAAGGAAAGAAGGATGGTGT 60.500 47.826 0.00 0.00 0.00 4.16
1205 1489 1.286553 GAGAGAGAGAAGGGGTGAGGA 59.713 57.143 0.00 0.00 0.00 3.71
1215 1499 4.193090 CGTAAGCTACCAGAGAGAGAGAA 58.807 47.826 0.00 0.00 0.00 2.87
1223 1508 2.008329 AGTCGACGTAAGCTACCAGAG 58.992 52.381 10.46 0.00 45.62 3.35
1353 1638 3.122948 CACCTAACAGAACACGGAAATCG 59.877 47.826 0.00 0.00 45.88 3.34
1385 1693 9.939802 AGTAGTCTAAGTAAAACCATCGAAAAT 57.060 29.630 0.00 0.00 0.00 1.82
1386 1694 9.768662 AAGTAGTCTAAGTAAAACCATCGAAAA 57.231 29.630 0.00 0.00 0.00 2.29
1388 1696 9.846248 GTAAGTAGTCTAAGTAAAACCATCGAA 57.154 33.333 0.00 0.00 0.00 3.71
1389 1697 9.236006 AGTAAGTAGTCTAAGTAAAACCATCGA 57.764 33.333 0.00 0.00 0.00 3.59
1393 1701 9.525826 AGCTAGTAAGTAGTCTAAGTAAAACCA 57.474 33.333 0.00 0.00 0.00 3.67
1410 1718 6.597832 ATGAGGCCTATACAAGCTAGTAAG 57.402 41.667 4.42 0.00 0.00 2.34
1411 1719 5.183331 CGATGAGGCCTATACAAGCTAGTAA 59.817 44.000 4.42 0.00 0.00 2.24
1412 1720 4.700692 CGATGAGGCCTATACAAGCTAGTA 59.299 45.833 4.42 0.00 0.00 1.82
1413 1721 3.508012 CGATGAGGCCTATACAAGCTAGT 59.492 47.826 4.42 0.00 0.00 2.57
1499 1955 3.980134 CGATGACTCTGGAGATTCAATCG 59.020 47.826 4.49 7.31 37.30 3.34
1505 1961 4.464244 TCAAACTCGATGACTCTGGAGATT 59.536 41.667 4.49 0.00 0.00 2.40
1599 2055 7.261325 ACTCAATGTCATGTGTAGTCACTATC 58.739 38.462 0.00 0.00 44.14 2.08
1721 2177 7.548075 AGGCTGAAATTTAATTGAAGCAGATTG 59.452 33.333 19.56 0.00 34.78 2.67
1753 2209 6.109156 TGAGCATTCCTTTAGTCAACTACA 57.891 37.500 0.00 0.00 0.00 2.74
1781 2237 6.619744 AGCATAGTGACATGATATCTCGAAG 58.380 40.000 0.00 0.00 0.00 3.79
1784 2241 7.972832 ACAATAGCATAGTGACATGATATCTCG 59.027 37.037 0.00 0.00 39.37 4.04
1795 2252 6.898041 TGTTGAAACACAATAGCATAGTGAC 58.102 36.000 0.00 0.00 40.40 3.67
1820 2277 3.199880 ACCATTAGCAGAAATCTCCCG 57.800 47.619 0.00 0.00 0.00 5.14
1829 2286 7.539034 TCAGCAGTTATATACCATTAGCAGA 57.461 36.000 0.00 0.00 0.00 4.26
1838 2295 7.905604 TGTGCATAATCAGCAGTTATATACC 57.094 36.000 0.00 0.00 43.63 2.73
1954 2413 5.643348 TGTGCCAAGTAATCATAGACAGTTG 59.357 40.000 0.00 0.00 0.00 3.16
1959 2418 5.586243 ACACATGTGCCAAGTAATCATAGAC 59.414 40.000 25.68 0.00 0.00 2.59
2125 2593 9.042450 TGACAAGTTCTAGTTCCTCCATTATAA 57.958 33.333 0.00 0.00 0.00 0.98
2131 2599 6.017192 AGTATGACAAGTTCTAGTTCCTCCA 58.983 40.000 0.00 0.00 0.00 3.86
2212 2694 9.973661 ATATAACTAGATAGAGCAGACTCACAT 57.026 33.333 0.00 0.00 46.09 3.21
2300 2782 7.308435 TGAGTACGTGCTAGATATCAATGATG 58.692 38.462 6.01 0.00 0.00 3.07
2324 2806 7.721286 ACTAAACAGAGAAGACTCACAAATG 57.279 36.000 0.00 0.00 44.79 2.32
2499 2993 2.953648 TGGCAGCATCAATGAATACCAG 59.046 45.455 0.00 0.00 0.00 4.00
2502 2996 4.644103 AGTTGGCAGCATCAATGAATAC 57.356 40.909 3.63 0.00 0.00 1.89
2537 3031 6.070881 TGGCAGCACCACTAAAATTATTTCAT 60.071 34.615 0.00 0.00 46.36 2.57
2579 3073 7.009540 GCACCATCAATGAATTTTACAACTAGC 59.990 37.037 0.00 0.00 0.00 3.42
2588 3082 7.656707 GTGTAAAGCACCATCAATGAATTTT 57.343 32.000 0.00 0.00 42.10 1.82
2667 3161 7.827729 ACAGTTATAGTTCCGCCTTTAGATTTT 59.172 33.333 0.00 0.00 0.00 1.82
2704 3199 7.399191 ACTGTACTACAATATTCCCTGTTCTCA 59.601 37.037 0.00 0.00 0.00 3.27
2842 3340 1.327303 CAGCACCTGCCAAACCTAAA 58.673 50.000 0.00 0.00 43.38 1.85
2926 3424 4.114073 TCACTCAAGCAAACAAAATGCAG 58.886 39.130 0.00 0.00 46.22 4.41
2998 3496 5.907207 AGAAGTAGACATGCATACGAACAT 58.093 37.500 0.00 0.00 0.00 2.71
3049 3547 7.303261 TGAATTATTACGAGTACGATAGGCTG 58.697 38.462 0.00 0.00 42.66 4.85
3626 5110 0.692476 CCCACTTCCTGGTGATGTCA 59.308 55.000 0.00 0.00 38.60 3.58
3665 5149 0.543277 TGGCCATGACTAGCAAGAGG 59.457 55.000 0.00 0.00 0.00 3.69
3717 5201 2.109229 AGCTACTACCATGGAGGCAT 57.891 50.000 21.47 0.00 43.14 4.40
3735 5219 0.820226 TGGTGGCATCTCTCGAGAAG 59.180 55.000 17.36 10.70 41.36 2.85
3786 5270 1.691434 GGGCATTTTGTCCACCTCAAA 59.309 47.619 0.00 0.00 42.98 2.69
3788 5272 0.893270 CGGGCATTTTGTCCACCTCA 60.893 55.000 0.00 0.00 43.88 3.86
3974 5458 2.855660 TCAACGACAGAACGTCAAGA 57.144 45.000 0.00 0.00 45.70 3.02
4054 5554 1.337823 GGACACTGCTACAACACCGAT 60.338 52.381 0.00 0.00 0.00 4.18
4057 5557 1.202651 ACTGGACACTGCTACAACACC 60.203 52.381 0.00 0.00 0.00 4.16
4067 5568 2.487934 CTCCAAACAGACTGGACACTG 58.512 52.381 7.51 0.00 38.07 3.66
4127 5628 3.641906 CCTGGAAGATTCGTATGGTACCT 59.358 47.826 14.36 1.08 34.07 3.08
4138 5639 2.418884 GGAACCGAGACCTGGAAGATTC 60.419 54.545 0.00 0.00 34.07 2.52
4153 5659 3.055719 AGGCATGCAACGGAACCG 61.056 61.111 21.36 11.83 46.03 4.44
4155 5661 1.081242 CACAGGCATGCAACGGAAC 60.081 57.895 21.36 0.00 0.00 3.62
4169 5675 4.758674 AGGTGTCTGTCAATCATTTCACAG 59.241 41.667 1.04 1.04 38.09 3.66
4172 5678 5.934043 CAGTAGGTGTCTGTCAATCATTTCA 59.066 40.000 0.00 0.00 0.00 2.69
4175 5681 5.482908 GTCAGTAGGTGTCTGTCAATCATT 58.517 41.667 0.00 0.00 34.86 2.57
4216 5722 1.723220 CATCTCAGCAGACACCACTG 58.277 55.000 0.00 0.00 40.43 3.66
4266 5772 0.679640 TCATCGTTCCACCAATGCCC 60.680 55.000 0.00 0.00 0.00 5.36
4323 5870 6.292168 CGATGTAACGGAATAAAGCCAACTAG 60.292 42.308 0.00 0.00 0.00 2.57
4325 5872 4.331717 CGATGTAACGGAATAAAGCCAACT 59.668 41.667 0.00 0.00 0.00 3.16
4326 5873 4.093850 ACGATGTAACGGAATAAAGCCAAC 59.906 41.667 0.00 0.00 37.61 3.77
4327 5874 4.255301 ACGATGTAACGGAATAAAGCCAA 58.745 39.130 0.00 0.00 37.61 4.52
4330 5877 5.233476 TCATGACGATGTAACGGAATAAAGC 59.767 40.000 0.00 0.00 37.61 3.51
4331 5878 6.822073 TCATGACGATGTAACGGAATAAAG 57.178 37.500 0.00 0.00 37.61 1.85
4335 5882 4.039245 AGGATCATGACGATGTAACGGAAT 59.961 41.667 0.00 0.00 33.17 3.01
4339 5886 3.060272 GCAAGGATCATGACGATGTAACG 60.060 47.826 0.00 0.00 33.17 3.18
4340 5887 4.122776 AGCAAGGATCATGACGATGTAAC 58.877 43.478 0.00 0.00 33.17 2.50
4345 5892 4.613925 ATGTAGCAAGGATCATGACGAT 57.386 40.909 0.00 0.00 36.91 3.73
4346 5893 5.243730 TCATATGTAGCAAGGATCATGACGA 59.756 40.000 0.00 0.00 0.00 4.20
4347 5894 5.347093 GTCATATGTAGCAAGGATCATGACG 59.653 44.000 0.00 0.00 33.85 4.35
4348 5895 6.226052 TGTCATATGTAGCAAGGATCATGAC 58.774 40.000 0.00 7.98 40.75 3.06
4349 5896 6.423776 TGTCATATGTAGCAAGGATCATGA 57.576 37.500 0.00 0.00 0.00 3.07
4350 5897 8.959705 ATATGTCATATGTAGCAAGGATCATG 57.040 34.615 4.47 0.00 0.00 3.07
4353 5991 9.610705 AATGATATGTCATATGTAGCAAGGATC 57.389 33.333 10.15 6.62 44.20 3.36
4370 6008 9.965824 GGATTTTGTTTTCCGATAATGATATGT 57.034 29.630 0.00 0.00 0.00 2.29
4375 6013 9.238368 AGTAAGGATTTTGTTTTCCGATAATGA 57.762 29.630 0.00 0.00 37.10 2.57
4424 6062 9.681062 CTCCCTCTGTAAAGAAATATAAAACCA 57.319 33.333 0.00 0.00 0.00 3.67
4444 6082 8.038944 TGAGTTTATTTACACATGTACTCCCTC 58.961 37.037 15.18 6.44 0.00 4.30
4463 6101 4.500887 CCGGAGACTGTCAACTTGAGTTTA 60.501 45.833 10.88 0.00 35.83 2.01
4465 6103 2.224066 CCGGAGACTGTCAACTTGAGTT 60.224 50.000 10.88 0.00 39.12 3.01
4473 6111 0.251653 ACCTAGCCGGAGACTGTCAA 60.252 55.000 5.05 0.00 36.31 3.18
4485 6123 6.684686 TCATCATTACATTACGTACCTAGCC 58.315 40.000 0.00 0.00 0.00 3.93
4493 6131 8.492673 ACAATTGACTCATCATTACATTACGT 57.507 30.769 13.59 0.00 33.85 3.57
4503 6141 6.925165 GGTTTTGTGAACAATTGACTCATCAT 59.075 34.615 13.59 0.00 35.55 2.45
4508 6207 5.519927 CCAAGGTTTTGTGAACAATTGACTC 59.480 40.000 13.59 8.76 35.55 3.36
4517 6216 5.830000 AACTAGACCAAGGTTTTGTGAAC 57.170 39.130 0.00 0.00 32.21 3.18
4521 6220 5.376756 TGGTAACTAGACCAAGGTTTTGT 57.623 39.130 0.00 0.00 46.70 2.83
4531 6230 1.755380 ACTGCGGATGGTAACTAGACC 59.245 52.381 0.00 0.00 40.21 3.85
4534 6233 3.802948 AGAACTGCGGATGGTAACTAG 57.197 47.619 0.00 0.00 37.61 2.57
4565 6264 6.208402 TGTGCTCAATTATTTTGTAAGAGCCA 59.792 34.615 0.00 0.00 44.61 4.75
4568 6267 7.965107 GGAGTGTGCTCAATTATTTTGTAAGAG 59.035 37.037 0.00 0.00 43.37 2.85
4623 6322 7.585286 ACATGCACATAATTCATGTTCAAAC 57.415 32.000 4.36 0.00 46.01 2.93
4680 6379 6.492087 CCAAACCCTACAAAAGATTTCCTGTA 59.508 38.462 0.00 0.00 0.00 2.74
4684 6383 6.220930 GTTCCAAACCCTACAAAAGATTTCC 58.779 40.000 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.