Multiple sequence alignment - TraesCS3D01G454600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G454600 chr3D 100.000 6101 0 0 1 6101 561014598 561020698 0.000000e+00 11267
1 TraesCS3D01G454600 chr1D 95.331 5954 228 19 3 5939 78399504 78393584 0.000000e+00 9409
2 TraesCS3D01G454600 chr1D 96.117 206 7 1 5896 6101 78393583 78393379 9.800000e-88 335
3 TraesCS3D01G454600 chr2D 95.329 5951 227 17 3 5939 534499644 534505557 0.000000e+00 9402
4 TraesCS3D01G454600 chr2D 95.631 206 9 0 5896 6101 534505558 534505763 1.270000e-86 331
5 TraesCS3D01G454600 chr2A 81.115 3569 545 81 318 3800 718352845 718356370 0.000000e+00 2737
6 TraesCS3D01G454600 chr2A 86.747 2324 293 11 3786 6101 718356559 718358875 0.000000e+00 2571
7 TraesCS3D01G454600 chr2A 86.025 322 32 9 3 322 718352420 718352730 3.520000e-87 333
8 TraesCS3D01G454600 chr5B 85.707 2078 287 9 4029 6101 522086349 522084277 0.000000e+00 2183
9 TraesCS3D01G454600 chr5B 82.392 2408 343 58 318 2670 522090386 522088005 0.000000e+00 2023
10 TraesCS3D01G454600 chr5B 86.644 292 32 6 3 291 522090805 522090518 3.550000e-82 316
11 TraesCS3D01G454600 chr4A 81.395 258 43 5 1446 1701 544597695 544597949 8.020000e-49 206
12 TraesCS3D01G454600 chr6A 79.688 256 49 3 1447 1701 42687641 42687388 1.350000e-41 182
13 TraesCS3D01G454600 chr6A 78.988 257 51 3 1449 1704 42641018 42640764 8.130000e-39 172
14 TraesCS3D01G454600 chr6A 78.346 254 52 3 1449 1701 42353672 42353421 1.760000e-35 161
15 TraesCS3D01G454600 chr6A 78.346 254 46 6 1449 1701 42608315 42608070 8.190000e-34 156
16 TraesCS3D01G454600 chr6A 79.195 149 31 0 2045 2193 42353101 42352953 3.010000e-18 104
17 TraesCS3D01G454600 chr6A 78.523 149 32 0 2045 2193 42318853 42318705 1.400000e-16 99
18 TraesCS3D01G454600 chr6A 78.523 149 32 0 2045 2193 42565487 42565339 1.400000e-16 99
19 TraesCS3D01G454600 chr6A 78.523 149 32 0 2045 2193 42572234 42572086 1.400000e-16 99
20 TraesCS3D01G454600 chr7A 80.537 149 29 0 2045 2193 126911335 126911187 1.390000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G454600 chr3D 561014598 561020698 6100 False 11267.000000 11267 100.000000 1 6101 1 chr3D.!!$F1 6100
1 TraesCS3D01G454600 chr1D 78393379 78399504 6125 True 4872.000000 9409 95.724000 3 6101 2 chr1D.!!$R1 6098
2 TraesCS3D01G454600 chr2D 534499644 534505763 6119 False 4866.500000 9402 95.480000 3 6101 2 chr2D.!!$F1 6098
3 TraesCS3D01G454600 chr2A 718352420 718358875 6455 False 1880.333333 2737 84.629000 3 6101 3 chr2A.!!$F1 6098
4 TraesCS3D01G454600 chr5B 522084277 522090805 6528 True 1507.333333 2183 84.914333 3 6101 3 chr5B.!!$R1 6098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 934 1.168714 AGAGTTGCGCTCATTTTCCC 58.831 50.0 9.73 0.00 46.47 3.97 F
1463 1611 0.036022 ACTCAGTTCTTCCTGCCTGC 59.964 55.0 0.00 0.00 32.32 4.85 F
2999 3210 0.174389 CCGTATGAGCTGCAGTCTGT 59.826 55.0 16.64 6.71 0.00 3.41 F
3196 3407 0.319040 CCTATGGATCTCGTGCCGTG 60.319 60.0 0.00 0.00 0.00 4.94 F
3879 4312 0.798776 CCTGGTTCAGTGATGAACGC 59.201 55.0 13.31 8.24 46.55 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 2008 0.180406 AGAGCACACCGACCACTTTT 59.820 50.0 0.00 0.0 0.0 2.27 R
3192 3403 0.605319 TACTTGGCCTTGAAGCACGG 60.605 55.0 3.32 0.0 0.0 4.94 R
3879 4312 0.035439 AATTCACCGGCCTGTACCTG 60.035 55.0 0.00 0.0 0.0 4.00 R
4005 4438 0.323957 GGTCTGTTCACACCCTACCC 59.676 60.0 0.00 0.0 0.0 3.69 R
5761 6547 0.177141 GCTAGGCGGTCATGGTGTTA 59.823 55.0 0.00 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.541588 GTGGTTTCACTGATTGCCCTC 59.458 52.381 0.00 0.00 40.58 4.30
104 105 9.936759 TCGTCATAAAATCCTATGCATGTTATA 57.063 29.630 10.16 0.00 30.61 0.98
351 485 3.710165 TGCTGATCTCAGATCACTCCATT 59.290 43.478 13.76 0.00 46.59 3.16
621 756 4.134563 GGAAATACATATTCCAGCACGGT 58.865 43.478 0.56 0.00 44.70 4.83
796 934 1.168714 AGAGTTGCGCTCATTTTCCC 58.831 50.000 9.73 0.00 46.47 3.97
1037 1181 4.015084 CAGTCTGATCAGGAAGCCAATTT 58.985 43.478 22.42 0.00 0.00 1.82
1463 1611 0.036022 ACTCAGTTCTTCCTGCCTGC 59.964 55.000 0.00 0.00 32.32 4.85
1527 1675 3.265791 GTCAAGGAAGCTCCATGTACTG 58.734 50.000 5.21 0.00 39.61 2.74
1765 1913 1.133025 GCTACATGGCAGCACGAAATT 59.867 47.619 14.69 0.00 38.93 1.82
1846 2008 6.856135 TTCGCTATCTTACGAACAGAGATA 57.144 37.500 0.00 0.00 42.85 1.98
1855 2017 7.088905 TCTTACGAACAGAGATAAAAGTGGTC 58.911 38.462 0.00 0.00 0.00 4.02
1911 2073 2.242196 CCAGAAGCTCAAAATCCCCCTA 59.758 50.000 0.00 0.00 0.00 3.53
1983 2149 4.987408 TTTCCATTGTAGTCGATACGGA 57.013 40.909 0.00 0.00 37.17 4.69
2089 2257 3.423539 AAGGCAAGCACTTCATGAGTA 57.576 42.857 0.00 0.00 36.65 2.59
2207 2375 4.583073 GGGTAAAGGCCACATCGATTTTAT 59.417 41.667 5.01 0.00 0.00 1.40
2261 2430 4.393062 CGGTAACAGCTGTGAAATCTGAAT 59.607 41.667 22.49 2.51 0.00 2.57
2331 2506 0.545071 CAAGAACCAGGCCCCCAAAT 60.545 55.000 0.00 0.00 0.00 2.32
2385 2561 4.319190 CCATGCTCGTTTCGTAGTTTTTCA 60.319 41.667 0.00 0.00 0.00 2.69
2409 2585 7.041372 TCAGTCAGCAACTATGTTTTCTTAACC 60.041 37.037 0.00 0.00 36.07 2.85
2425 2601 6.212888 TCTTAACCTAGTACGGACCATTTC 57.787 41.667 0.00 0.00 0.00 2.17
2434 2610 2.863809 ACGGACCATTTCTCTTTGCTT 58.136 42.857 0.00 0.00 0.00 3.91
2480 2657 8.603242 TCTTTTATATCCGGTGATAGCTTTTC 57.397 34.615 0.00 0.00 36.91 2.29
2492 2669 6.258068 GGTGATAGCTTTTCGTTACTAGCATT 59.742 38.462 0.00 0.00 34.00 3.56
2652 2834 6.783708 ACAATCAAACCTTTTTAGGTGACA 57.216 33.333 0.00 0.00 42.20 3.58
2657 2839 7.176589 TCAAACCTTTTTAGGTGACATTGTT 57.823 32.000 0.00 0.00 42.20 2.83
2861 3044 5.066246 ACGTACAGTTCTCATTAGGAGCTAC 59.934 44.000 0.00 0.00 43.70 3.58
2999 3210 0.174389 CCGTATGAGCTGCAGTCTGT 59.826 55.000 16.64 6.71 0.00 3.41
3000 3211 1.554392 CGTATGAGCTGCAGTCTGTC 58.446 55.000 16.64 7.96 0.00 3.51
3186 3397 8.557029 CAACGTATTAGTTTTTCCCTATGGATC 58.443 37.037 0.00 0.00 34.49 3.36
3189 3400 7.328737 CGTATTAGTTTTTCCCTATGGATCTCG 59.671 40.741 0.00 0.00 41.40 4.04
3191 3402 4.770795 AGTTTTTCCCTATGGATCTCGTG 58.229 43.478 0.00 0.00 41.40 4.35
3192 3403 2.910688 TTTCCCTATGGATCTCGTGC 57.089 50.000 0.00 0.00 41.40 5.34
3193 3404 1.048601 TTCCCTATGGATCTCGTGCC 58.951 55.000 0.00 0.00 41.40 5.01
3195 3406 1.464376 CCCTATGGATCTCGTGCCGT 61.464 60.000 0.00 0.00 0.00 5.68
3196 3407 0.319040 CCTATGGATCTCGTGCCGTG 60.319 60.000 0.00 0.00 0.00 4.94
3197 3408 0.941463 CTATGGATCTCGTGCCGTGC 60.941 60.000 0.00 0.00 0.00 5.34
3199 3410 2.125512 GGATCTCGTGCCGTGCTT 60.126 61.111 0.00 0.00 0.00 3.91
3200 3411 2.167861 GGATCTCGTGCCGTGCTTC 61.168 63.158 0.00 0.00 0.00 3.86
3201 3412 1.446099 GATCTCGTGCCGTGCTTCA 60.446 57.895 0.00 0.00 0.00 3.02
3203 3414 1.016130 ATCTCGTGCCGTGCTTCAAG 61.016 55.000 0.00 0.00 0.00 3.02
3204 3415 2.664851 TCGTGCCGTGCTTCAAGG 60.665 61.111 0.00 0.00 36.14 3.61
3222 3433 8.078596 GCTTCAAGGCCAAGTATATTTGAATAG 58.921 37.037 5.01 0.13 34.99 1.73
3241 3465 7.278135 TGAATAGATTTCTTAGCATGCAGTCT 58.722 34.615 21.98 12.35 0.00 3.24
3331 3555 5.666462 TCAACAACTCTTGTACACAGCTAA 58.334 37.500 0.00 0.00 44.59 3.09
3538 3762 4.865761 GATACGGCGGCGCACTCA 62.866 66.667 34.36 15.54 0.00 3.41
3585 3810 4.103153 TCACATCCAAAAGGTCTTCTCAGT 59.897 41.667 0.00 0.00 0.00 3.41
3602 3827 1.080434 GTCTGCGTTCGCTCTTCCT 60.080 57.895 17.63 0.00 0.00 3.36
3766 3992 3.613193 GCAATCAAAGCAGCATGAGTTCA 60.613 43.478 0.00 0.00 39.69 3.18
3879 4312 0.798776 CCTGGTTCAGTGATGAACGC 59.201 55.000 13.31 8.24 46.55 4.84
4005 4438 8.702408 TTTCAACGTTTTTAATACACTCATCG 57.298 30.769 0.00 0.00 0.00 3.84
4013 4447 2.769602 ATACACTCATCGGGTAGGGT 57.230 50.000 0.00 0.00 32.98 4.34
4253 5032 0.532573 AGGTACATCGACCAGCAGTG 59.467 55.000 0.00 0.00 42.47 3.66
4902 5683 8.610248 AGTTGAATTTGAAAATGCATTCATCA 57.390 26.923 13.38 16.73 38.98 3.07
5054 5835 0.821301 TGTTTGATGCCGCACTTCCA 60.821 50.000 0.00 0.00 0.00 3.53
5099 5880 1.568612 AACTGCGTCAGCCGAACATG 61.569 55.000 6.74 0.00 44.33 3.21
5215 5996 7.095060 CGAAATTCATAGTGGGATATCAGGTTG 60.095 40.741 4.83 0.00 0.00 3.77
5331 6112 0.677731 GCTGCTCTGTATGGGCAACA 60.678 55.000 0.00 0.00 35.49 3.33
5342 6123 1.300963 GGGCAACATCTCTGGCAGA 59.699 57.895 17.68 17.68 40.97 4.26
5495 6280 0.180406 GATGCCGAACCACCACCTAT 59.820 55.000 0.00 0.00 0.00 2.57
5538 6323 1.537562 GGTTCACCGTCATCCGTATCC 60.538 57.143 0.00 0.00 33.66 2.59
5565 6350 6.024049 GTCAGACGACCAAATGATCATTTTC 58.976 40.000 27.30 21.82 35.52 2.29
5664 6450 3.264450 ACGATGAAAGGAAAGACCAGGAT 59.736 43.478 0.00 0.00 42.04 3.24
5761 6547 4.379813 GCGTTCACCATCTGAATTGTCATT 60.380 41.667 0.00 0.00 41.10 2.57
5771 6557 7.148035 CCATCTGAATTGTCATTAACACCATGA 60.148 37.037 0.00 0.00 37.70 3.07
5773 6559 6.150976 TCTGAATTGTCATTAACACCATGACC 59.849 38.462 9.90 0.00 46.91 4.02
5905 6735 9.275398 AGTTCTCTCCACTATAGTCTAAATACG 57.725 37.037 1.26 0.00 0.00 3.06
6054 6886 7.499200 TCAAATTTGATCCATCCTCCATTTT 57.501 32.000 16.91 0.00 31.01 1.82
6075 6907 7.912056 TTTTCTCATCTTCTTCCATGTAGTG 57.088 36.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.357367 AGACACTGAGTTGATTACTTGGTTT 58.643 36.000 0.00 0.00 37.17 3.27
1 2 5.930135 AGACACTGAGTTGATTACTTGGTT 58.070 37.500 0.00 0.00 37.17 3.67
70 71 3.134804 AGGATTTTATGACGACCTGAGGG 59.865 47.826 2.38 0.00 38.88 4.30
104 105 6.258727 CGAGAGATAACACAGGCATAAAATGT 59.741 38.462 0.00 0.00 0.00 2.71
326 460 4.121317 GGAGTGATCTGAGATCAGCAAAG 58.879 47.826 24.38 0.00 43.46 2.77
621 756 0.250124 ACCACGGATCAGTTGCGAAA 60.250 50.000 0.00 0.00 42.53 3.46
1037 1181 1.595311 ATTCATGTAGGGGCACTCCA 58.405 50.000 0.00 0.00 37.22 3.86
1182 1326 7.002250 TGGTCTTTAATGGAAAATTGCATGA 57.998 32.000 0.00 0.00 39.28 3.07
1479 1627 3.779738 TGTCCCACATGATCACTATCCAA 59.220 43.478 0.00 0.00 0.00 3.53
1527 1675 3.866582 CCCCTGATGAGCGGGTCC 61.867 72.222 4.54 0.00 41.87 4.46
1556 1704 1.849219 GCTTATCTCTCGTTGCGTCAG 59.151 52.381 0.00 0.00 0.00 3.51
1797 1959 9.444600 AAAATGGATCAGAAAAATGGAAAGATG 57.555 29.630 0.00 0.00 0.00 2.90
1807 1969 8.055279 AGATAGCGAAAAATGGATCAGAAAAA 57.945 30.769 0.00 0.00 0.00 1.94
1846 2008 0.180406 AGAGCACACCGACCACTTTT 59.820 50.000 0.00 0.00 0.00 2.27
1855 2017 5.171476 CCTAATTATATGGAGAGCACACCG 58.829 45.833 0.00 0.00 0.00 4.94
1968 2134 2.292569 GCTGGATCCGTATCGACTACAA 59.707 50.000 7.39 0.00 32.44 2.41
1983 2149 3.614092 ACAGAAATCAACGATGCTGGAT 58.386 40.909 0.00 0.00 32.93 3.41
2089 2257 0.610232 GTTCCCCTGCAGCTTGATGT 60.610 55.000 8.66 0.00 0.00 3.06
2261 2430 8.063200 TGATTTCATAGAACTAGGTTCGAAGA 57.937 34.615 0.00 0.76 45.96 2.87
2323 2498 2.289547 CGAGCGTTACATTATTTGGGGG 59.710 50.000 0.00 0.00 0.00 5.40
2331 2506 2.463553 CGGTCTCGAGCGTTACATTA 57.536 50.000 7.81 0.00 46.01 1.90
2385 2561 6.998673 AGGTTAAGAAAACATAGTTGCTGACT 59.001 34.615 0.00 0.00 42.55 3.41
2409 2585 4.567159 GCAAAGAGAAATGGTCCGTACTAG 59.433 45.833 0.00 0.00 0.00 2.57
2425 2601 2.030007 TGGGCGATTGAAAAGCAAAGAG 60.030 45.455 0.00 0.00 40.48 2.85
2434 2610 1.337118 AAAAGGCTGGGCGATTGAAA 58.663 45.000 0.00 0.00 0.00 2.69
2469 2646 7.265673 AGAATGCTAGTAACGAAAAGCTATCA 58.734 34.615 0.00 0.00 35.95 2.15
2480 2657 5.119279 GGATGCACATAGAATGCTAGTAACG 59.881 44.000 0.00 0.00 43.77 3.18
2492 2669 4.587262 ACTAACCGTATGGATGCACATAGA 59.413 41.667 8.33 0.00 39.21 1.98
2652 2834 5.298026 GCCATGTTTGGTTTGGTAAAACAAT 59.702 36.000 5.69 0.00 46.50 2.71
2657 2839 4.696479 ATGCCATGTTTGGTTTGGTAAA 57.304 36.364 0.00 0.00 45.57 2.01
2911 3118 8.565896 TGTGATCATAGTTGTGCTAGAAAAAT 57.434 30.769 0.00 0.00 32.45 1.82
2956 3164 2.762745 TGTCGGCAAAGTAGGACTTTC 58.237 47.619 1.62 0.00 44.47 2.62
2999 3210 5.232463 GCCGAGTAATAATGATTAACCCGA 58.768 41.667 0.00 0.00 29.20 5.14
3000 3211 4.390909 GGCCGAGTAATAATGATTAACCCG 59.609 45.833 0.00 0.00 29.20 5.28
3035 3246 5.276963 GGACTAGTAAGTGACTCGATCTTCG 60.277 48.000 0.00 0.00 39.81 3.79
3122 3333 3.476552 TGGCCTTGAAGCGGATTATAAG 58.523 45.455 3.32 0.00 0.00 1.73
3191 3402 3.273080 CTTGGCCTTGAAGCACGGC 62.273 63.158 3.32 6.40 46.18 5.68
3192 3403 0.605319 TACTTGGCCTTGAAGCACGG 60.605 55.000 3.32 0.00 0.00 4.94
3193 3404 1.453155 ATACTTGGCCTTGAAGCACG 58.547 50.000 3.32 0.00 0.00 5.34
3195 3406 5.260424 TCAAATATACTTGGCCTTGAAGCA 58.740 37.500 3.32 0.00 0.00 3.91
3196 3407 5.835113 TCAAATATACTTGGCCTTGAAGC 57.165 39.130 3.32 0.00 0.00 3.86
3197 3408 9.342308 TCTATTCAAATATACTTGGCCTTGAAG 57.658 33.333 15.18 8.77 36.53 3.02
3199 3410 9.866655 AATCTATTCAAATATACTTGGCCTTGA 57.133 29.630 3.32 0.00 0.00 3.02
3222 3433 8.600449 ACTATAAGACTGCATGCTAAGAAATC 57.400 34.615 20.33 2.86 0.00 2.17
3321 3545 8.830201 ATCAAAATTTGCATTTTAGCTGTGTA 57.170 26.923 0.00 0.00 40.09 2.90
3331 3555 5.048573 GCCTTGTGGATCAAAATTTGCATTT 60.049 36.000 0.00 0.00 35.48 2.32
3538 3762 4.933400 ACGTGGTAGAACTAAATTCGCAAT 59.067 37.500 0.00 0.00 42.69 3.56
3585 3810 0.885879 TAAGGAAGAGCGAACGCAGA 59.114 50.000 20.66 0.00 44.88 4.26
3602 3827 2.223386 GGCAAAGCGTTTGTGTGACTAA 60.223 45.455 10.65 0.00 42.56 2.24
3662 3888 3.239449 GAAAGGGAACAAAGGGGACATT 58.761 45.455 0.00 0.00 0.00 2.71
3879 4312 0.035439 AATTCACCGGCCTGTACCTG 60.035 55.000 0.00 0.00 0.00 4.00
4005 4438 0.323957 GGTCTGTTCACACCCTACCC 59.676 60.000 0.00 0.00 0.00 3.69
4013 4447 0.815213 GTGCAGCAGGTCTGTTCACA 60.815 55.000 0.00 0.00 44.66 3.58
4253 5032 3.013921 TGGTTCCCAGTCGATTTTATGC 58.986 45.455 0.00 0.00 0.00 3.14
4902 5683 0.764369 TGAACCACTCAGAGCCCAGT 60.764 55.000 0.00 0.00 0.00 4.00
4938 5719 5.835280 CAGGAAAGCTTGGGGTGATAAATAT 59.165 40.000 0.00 0.00 0.00 1.28
4954 5735 2.615912 GGCATATCACTGACAGGAAAGC 59.384 50.000 7.51 3.17 0.00 3.51
5054 5835 5.505181 ACAAGTTGTCCTGGAATATCTGT 57.495 39.130 1.64 0.00 0.00 3.41
5099 5880 4.895224 AAAGGTTTCGAAACAGGAAGTC 57.105 40.909 34.79 19.55 40.63 3.01
5331 6112 2.090831 ACCTCCTACATCTGCCAGAGAT 60.091 50.000 0.00 0.00 42.70 2.75
5342 6123 2.372264 CAATTGCAGCACCTCCTACAT 58.628 47.619 0.00 0.00 0.00 2.29
5495 6280 2.098607 CGTAGAAGCGGATTGTCCACTA 59.901 50.000 0.00 0.00 35.91 2.74
5538 6323 8.256803 AAATGATCATTTGGTCGTCTGACACG 62.257 42.308 28.57 0.00 43.28 4.49
5664 6450 3.070476 TGATATTGCTGCAACCTGTCA 57.930 42.857 18.51 13.57 0.00 3.58
5761 6547 0.177141 GCTAGGCGGTCATGGTGTTA 59.823 55.000 0.00 0.00 0.00 2.41
5771 6557 1.826024 CCTCATCTTGCTAGGCGGT 59.174 57.895 0.00 0.00 0.00 5.68
5773 6559 4.040068 GCCTCATCTTGCTAGGCG 57.960 61.111 0.00 0.00 45.82 5.52
5905 6735 5.633182 ACATGTTGTTCACACTTGAAACAAC 59.367 36.000 23.34 23.34 43.52 3.32
6030 6861 7.400915 AGAAAATGGAGGATGGATCAAATTTGA 59.599 33.333 22.52 22.52 42.14 2.69
6045 6876 5.503927 TGGAAGAAGATGAGAAAATGGAGG 58.496 41.667 0.00 0.00 0.00 4.30
6075 6907 1.723870 GCATCACAAGTGCCGATCC 59.276 57.895 0.00 0.00 36.61 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.