Multiple sequence alignment - TraesCS3D01G453800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G453800 chr3D 100.000 4021 0 0 1 4021 560786886 560782866 0.000000e+00 7426.0
1 TraesCS3D01G453800 chr3D 83.741 1267 163 30 824 2077 560551405 560552641 0.000000e+00 1158.0
2 TraesCS3D01G453800 chr3D 88.181 973 111 4 1107 2077 560640204 560641174 0.000000e+00 1157.0
3 TraesCS3D01G453800 chr3D 99.058 531 5 0 1 531 397582384 397582914 0.000000e+00 953.0
4 TraesCS3D01G453800 chr3D 99.049 526 5 0 1 526 575437064 575437589 0.000000e+00 944.0
5 TraesCS3D01G453800 chr3D 97.288 553 10 4 1 553 308453175 308452628 0.000000e+00 933.0
6 TraesCS3D01G453800 chr3D 79.642 894 125 36 2156 3027 560827891 560828749 1.240000e-164 590.0
7 TraesCS3D01G453800 chr3D 81.748 652 91 19 2479 3110 560703156 560702513 1.660000e-143 520.0
8 TraesCS3D01G453800 chr3D 85.556 450 60 5 2584 3030 560553129 560553576 2.190000e-127 466.0
9 TraesCS3D01G453800 chr3D 96.578 263 7 2 3759 4021 46610508 46610768 6.170000e-118 435.0
10 TraesCS3D01G453800 chr3D 87.795 254 26 3 2232 2480 560285684 560285431 3.930000e-75 292.0
11 TraesCS3D01G453800 chr3D 97.872 47 0 1 3316 3362 45262362 45262407 3.330000e-11 80.5
12 TraesCS3D01G453800 chr3D 87.097 62 4 1 3619 3676 560756000 560755939 2.590000e-07 67.6
13 TraesCS3D01G453800 chr3B 94.259 1620 50 17 807 2426 745450660 745449084 0.000000e+00 2436.0
14 TraesCS3D01G453800 chr3B 89.466 1348 108 22 837 2161 745475044 745473708 0.000000e+00 1672.0
15 TraesCS3D01G453800 chr3B 86.948 1042 120 15 1041 2077 747493064 747494094 0.000000e+00 1157.0
16 TraesCS3D01G453800 chr3B 85.511 1125 133 17 929 2051 744590519 744591615 0.000000e+00 1147.0
17 TraesCS3D01G453800 chr3B 84.450 1164 152 17 927 2077 744728497 744729644 0.000000e+00 1120.0
18 TraesCS3D01G453800 chr3B 84.450 1164 152 17 927 2077 744847070 744848217 0.000000e+00 1120.0
19 TraesCS3D01G453800 chr3B 89.486 875 92 0 1049 1923 745540160 745541034 0.000000e+00 1107.0
20 TraesCS3D01G453800 chr3B 89.722 720 41 22 2418 3110 745448978 745448265 0.000000e+00 889.0
21 TraesCS3D01G453800 chr3B 90.358 643 57 4 2564 3204 745473306 745472667 0.000000e+00 839.0
22 TraesCS3D01G453800 chr3B 82.306 1006 118 36 2184 3146 745202347 745201359 0.000000e+00 817.0
23 TraesCS3D01G453800 chr3B 82.569 654 82 19 2479 3110 745243465 745242822 7.600000e-152 547.0
24 TraesCS3D01G453800 chr3B 85.491 448 61 4 2582 3027 744339123 744338678 7.870000e-127 464.0
25 TraesCS3D01G453800 chr3B 85.403 459 53 12 2569 3023 747494528 747494976 7.870000e-127 464.0
26 TraesCS3D01G453800 chr3B 95.219 251 11 1 2244 2493 745473740 745473490 2.910000e-106 396.0
27 TraesCS3D01G453800 chr3B 89.157 249 19 2 2235 2475 744418736 744418488 1.820000e-78 303.0
28 TraesCS3D01G453800 chr3B 85.271 258 30 7 2234 2490 744591673 744591923 3.990000e-65 259.0
29 TraesCS3D01G453800 chr3B 88.889 207 13 6 3366 3564 745467409 745467205 3.100000e-61 246.0
30 TraesCS3D01G453800 chr3B 94.040 151 6 3 526 673 745450857 745450707 4.040000e-55 226.0
31 TraesCS3D01G453800 chr3B 89.286 112 6 4 3259 3365 745467552 745467442 7.010000e-28 135.0
32 TraesCS3D01G453800 chr3B 92.754 69 5 0 691 759 745450729 745450661 2.560000e-17 100.0
33 TraesCS3D01G453800 chr3B 100.000 29 0 0 3563 3591 745467118 745467090 2.000000e-03 54.7
34 TraesCS3D01G453800 chr3A 87.406 1199 72 37 2244 3364 696599381 696598184 0.000000e+00 1304.0
35 TraesCS3D01G453800 chr3A 86.774 998 129 1 929 1923 696601873 696600876 0.000000e+00 1109.0
36 TraesCS3D01G453800 chr3A 81.985 1088 140 33 1041 2113 696478002 696476956 0.000000e+00 872.0
37 TraesCS3D01G453800 chr3A 82.317 656 90 19 2263 2906 696476924 696476283 2.730000e-151 545.0
38 TraesCS3D01G453800 chr3A 87.209 430 30 13 2954 3362 678044944 678044519 2.190000e-127 466.0
39 TraesCS3D01G453800 chr3A 84.709 412 23 12 3366 3748 696598150 696597750 3.790000e-100 375.0
40 TraesCS3D01G453800 chr3A 86.058 208 16 4 1966 2161 696599555 696599349 1.130000e-50 211.0
41 TraesCS3D01G453800 chr3A 97.368 38 1 0 837 874 696610828 696610791 9.330000e-07 65.8
42 TraesCS3D01G453800 chr7D 98.868 530 6 0 1 530 583588816 583588287 0.000000e+00 946.0
43 TraesCS3D01G453800 chr7D 98.145 539 9 1 1 538 5551548 5552086 0.000000e+00 939.0
44 TraesCS3D01G453800 chr7D 91.288 264 23 0 3757 4020 169818247 169817984 1.060000e-95 361.0
45 TraesCS3D01G453800 chr1D 98.866 529 6 0 1 529 12588104 12587576 0.000000e+00 944.0
46 TraesCS3D01G453800 chr1D 98.866 529 6 0 1 529 13836277 13835749 0.000000e+00 944.0
47 TraesCS3D01G453800 chr1D 98.505 535 8 0 1 535 14703852 14704386 0.000000e+00 944.0
48 TraesCS3D01G453800 chr1D 98.866 529 6 0 1 529 17566581 17567109 0.000000e+00 944.0
49 TraesCS3D01G453800 chrUn 82.642 651 81 19 2479 3107 301718583 301719223 7.600000e-152 547.0
50 TraesCS3D01G453800 chr1A 87.850 428 30 13 2954 3362 552504871 552505295 2.170000e-132 483.0
51 TraesCS3D01G453800 chr6A 87.413 429 31 13 2954 3362 595961814 595962239 4.700000e-129 472.0
52 TraesCS3D01G453800 chr2A 81.609 609 47 35 2954 3503 287751946 287752548 1.030000e-120 444.0
53 TraesCS3D01G453800 chr2A 85.854 410 36 13 2971 3362 295545499 295545094 2.240000e-112 416.0
54 TraesCS3D01G453800 chr2A 92.771 249 18 0 3757 4005 547143157 547142909 1.060000e-95 361.0
55 TraesCS3D01G453800 chr2B 79.907 647 52 40 3006 3592 623057536 623056908 1.740000e-108 403.0
56 TraesCS3D01G453800 chr6B 93.939 264 16 0 3758 4021 642857069 642857332 2.250000e-107 399.0
57 TraesCS3D01G453800 chr6B 91.729 266 22 0 3756 4021 38974874 38975139 1.770000e-98 370.0
58 TraesCS3D01G453800 chr1B 91.438 292 20 3 2954 3244 39565451 39565738 2.910000e-106 396.0
59 TraesCS3D01G453800 chr1B 90.566 265 25 0 3757 4021 506128514 506128250 6.390000e-93 351.0
60 TraesCS3D01G453800 chr5A 93.536 263 16 1 3759 4021 569787020 569787281 1.350000e-104 390.0
61 TraesCS3D01G453800 chr5D 92.278 259 20 0 3759 4017 382078752 382079010 6.350000e-98 368.0
62 TraesCS3D01G453800 chr5B 90.566 265 25 0 3757 4021 35607877 35608141 6.390000e-93 351.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G453800 chr3D 560782866 560786886 4020 True 7426.00 7426 100.00000 1 4021 1 chr3D.!!$R5 4020
1 TraesCS3D01G453800 chr3D 560640204 560641174 970 False 1157.00 1157 88.18100 1107 2077 1 chr3D.!!$F4 970
2 TraesCS3D01G453800 chr3D 397582384 397582914 530 False 953.00 953 99.05800 1 531 1 chr3D.!!$F3 530
3 TraesCS3D01G453800 chr3D 575437064 575437589 525 False 944.00 944 99.04900 1 526 1 chr3D.!!$F6 525
4 TraesCS3D01G453800 chr3D 308452628 308453175 547 True 933.00 933 97.28800 1 553 1 chr3D.!!$R1 552
5 TraesCS3D01G453800 chr3D 560551405 560553576 2171 False 812.00 1158 84.64850 824 3030 2 chr3D.!!$F7 2206
6 TraesCS3D01G453800 chr3D 560827891 560828749 858 False 590.00 590 79.64200 2156 3027 1 chr3D.!!$F5 871
7 TraesCS3D01G453800 chr3D 560702513 560703156 643 True 520.00 520 81.74800 2479 3110 1 chr3D.!!$R3 631
8 TraesCS3D01G453800 chr3B 744728497 744729644 1147 False 1120.00 1120 84.45000 927 2077 1 chr3B.!!$F1 1150
9 TraesCS3D01G453800 chr3B 744847070 744848217 1147 False 1120.00 1120 84.45000 927 2077 1 chr3B.!!$F2 1150
10 TraesCS3D01G453800 chr3B 745540160 745541034 874 False 1107.00 1107 89.48600 1049 1923 1 chr3B.!!$F3 874
11 TraesCS3D01G453800 chr3B 745472667 745475044 2377 True 969.00 1672 91.68100 837 3204 3 chr3B.!!$R7 2367
12 TraesCS3D01G453800 chr3B 745448265 745450857 2592 True 912.75 2436 92.69375 526 3110 4 chr3B.!!$R5 2584
13 TraesCS3D01G453800 chr3B 745201359 745202347 988 True 817.00 817 82.30600 2184 3146 1 chr3B.!!$R3 962
14 TraesCS3D01G453800 chr3B 747493064 747494976 1912 False 810.50 1157 86.17550 1041 3023 2 chr3B.!!$F5 1982
15 TraesCS3D01G453800 chr3B 744590519 744591923 1404 False 703.00 1147 85.39100 929 2490 2 chr3B.!!$F4 1561
16 TraesCS3D01G453800 chr3B 745242822 745243465 643 True 547.00 547 82.56900 2479 3110 1 chr3B.!!$R4 631
17 TraesCS3D01G453800 chr3A 696597750 696601873 4123 True 749.75 1304 86.23675 929 3748 4 chr3A.!!$R4 2819
18 TraesCS3D01G453800 chr3A 696476283 696478002 1719 True 708.50 872 82.15100 1041 2906 2 chr3A.!!$R3 1865
19 TraesCS3D01G453800 chr7D 583588287 583588816 529 True 946.00 946 98.86800 1 530 1 chr7D.!!$R2 529
20 TraesCS3D01G453800 chr7D 5551548 5552086 538 False 939.00 939 98.14500 1 538 1 chr7D.!!$F1 537
21 TraesCS3D01G453800 chr1D 12587576 12588104 528 True 944.00 944 98.86600 1 529 1 chr1D.!!$R1 528
22 TraesCS3D01G453800 chr1D 13835749 13836277 528 True 944.00 944 98.86600 1 529 1 chr1D.!!$R2 528
23 TraesCS3D01G453800 chr1D 14703852 14704386 534 False 944.00 944 98.50500 1 535 1 chr1D.!!$F1 534
24 TraesCS3D01G453800 chr1D 17566581 17567109 528 False 944.00 944 98.86600 1 529 1 chr1D.!!$F2 528
25 TraesCS3D01G453800 chrUn 301718583 301719223 640 False 547.00 547 82.64200 2479 3107 1 chrUn.!!$F1 628
26 TraesCS3D01G453800 chr2A 287751946 287752548 602 False 444.00 444 81.60900 2954 3503 1 chr2A.!!$F1 549
27 TraesCS3D01G453800 chr2B 623056908 623057536 628 True 403.00 403 79.90700 3006 3592 1 chr2B.!!$R1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 933 0.469917 ACCACCACTCACTCCAACAG 59.530 55.0 0.00 0.00 0.0 3.16 F
2089 3434 0.532573 CGTGGTATGGAGCTCACAGT 59.467 55.0 17.19 0.24 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2591 4339 0.190815 AGGTGGGGGACTGCAAATTT 59.809 50.0 0.00 0.0 0.0 1.82 R
3883 5751 0.034574 ACCACCAATATTGAGGCGCA 60.035 50.0 17.23 0.0 0.0 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 1.664965 GCCGGATAGATGACACCGC 60.665 63.158 5.05 0.00 43.37 5.68
540 541 0.958822 CCCCTACACCAACTGCAAAC 59.041 55.000 0.00 0.00 0.00 2.93
559 560 6.150809 TGCAAACTATGTGATGTGATTGCTAA 59.849 34.615 8.39 0.00 41.69 3.09
566 567 4.094739 TGTGATGTGATTGCTAATTGACCG 59.905 41.667 0.00 0.00 0.00 4.79
643 645 7.825331 TGACCAAATTTGTATGTCCTTACAA 57.175 32.000 16.73 2.63 39.58 2.41
654 656 8.731275 TGTATGTCCTTACAAATAGTTCATGG 57.269 34.615 0.00 0.00 39.58 3.66
655 657 6.699575 ATGTCCTTACAAATAGTTCATGGC 57.300 37.500 0.00 0.00 39.58 4.40
656 658 5.565509 TGTCCTTACAAATAGTTCATGGCA 58.434 37.500 0.00 0.00 30.91 4.92
657 659 6.007076 TGTCCTTACAAATAGTTCATGGCAA 58.993 36.000 0.00 0.00 30.91 4.52
658 660 6.491745 TGTCCTTACAAATAGTTCATGGCAAA 59.508 34.615 0.00 0.00 30.91 3.68
659 661 6.806739 GTCCTTACAAATAGTTCATGGCAAAC 59.193 38.462 0.00 0.00 0.00 2.93
660 662 6.719370 TCCTTACAAATAGTTCATGGCAAACT 59.281 34.615 9.36 9.36 40.06 2.66
661 663 7.885922 TCCTTACAAATAGTTCATGGCAAACTA 59.114 33.333 12.74 12.74 41.91 2.24
662 664 8.686334 CCTTACAAATAGTTCATGGCAAACTAT 58.314 33.333 15.55 15.55 46.71 2.12
663 665 9.507280 CTTACAAATAGTTCATGGCAAACTATG 57.493 33.333 19.92 14.48 44.97 2.23
664 666 7.466746 ACAAATAGTTCATGGCAAACTATGT 57.533 32.000 19.92 14.33 44.97 2.29
665 667 7.745022 CAAATAGTTCATGGCAAACTATGTG 57.255 36.000 20.08 20.08 44.97 3.21
666 668 7.701539 AAATAGTTCATGGCAAACTATGTGA 57.298 32.000 19.92 3.37 44.97 3.58
667 669 7.886629 AATAGTTCATGGCAAACTATGTGAT 57.113 32.000 19.92 6.72 44.97 3.06
668 670 5.571784 AGTTCATGGCAAACTATGTGATG 57.428 39.130 2.79 0.00 35.25 3.07
669 671 5.012239 AGTTCATGGCAAACTATGTGATGT 58.988 37.500 2.79 0.00 35.25 3.06
670 672 4.968812 TCATGGCAAACTATGTGATGTG 57.031 40.909 0.00 0.00 0.00 3.21
671 673 4.587891 TCATGGCAAACTATGTGATGTGA 58.412 39.130 0.00 0.00 0.00 3.58
672 674 5.195185 TCATGGCAAACTATGTGATGTGAT 58.805 37.500 0.00 0.00 0.00 3.06
673 675 5.297527 TCATGGCAAACTATGTGATGTGATC 59.702 40.000 0.00 0.00 0.00 2.92
674 676 3.947196 TGGCAAACTATGTGATGTGATCC 59.053 43.478 0.00 0.00 0.00 3.36
675 677 4.202441 GGCAAACTATGTGATGTGATCCT 58.798 43.478 0.00 0.00 0.00 3.24
676 678 5.104569 TGGCAAACTATGTGATGTGATCCTA 60.105 40.000 0.00 0.00 0.00 2.94
677 679 5.237344 GGCAAACTATGTGATGTGATCCTAC 59.763 44.000 0.00 0.00 0.00 3.18
678 680 5.050769 GCAAACTATGTGATGTGATCCTACG 60.051 44.000 0.00 0.00 0.00 3.51
679 681 6.273071 CAAACTATGTGATGTGATCCTACGA 58.727 40.000 0.00 0.00 0.00 3.43
680 682 5.440234 ACTATGTGATGTGATCCTACGAC 57.560 43.478 0.00 0.00 0.00 4.34
681 683 3.735237 ATGTGATGTGATCCTACGACC 57.265 47.619 0.00 0.00 0.00 4.79
682 684 2.452505 TGTGATGTGATCCTACGACCA 58.547 47.619 0.00 0.00 0.00 4.02
683 685 2.829120 TGTGATGTGATCCTACGACCAA 59.171 45.455 0.00 0.00 0.00 3.67
684 686 3.259625 TGTGATGTGATCCTACGACCAAA 59.740 43.478 0.00 0.00 0.00 3.28
685 687 3.617263 GTGATGTGATCCTACGACCAAAC 59.383 47.826 0.00 0.00 0.00 2.93
686 688 3.513912 TGATGTGATCCTACGACCAAACT 59.486 43.478 0.00 0.00 0.00 2.66
687 689 4.020573 TGATGTGATCCTACGACCAAACTT 60.021 41.667 0.00 0.00 0.00 2.66
688 690 3.659786 TGTGATCCTACGACCAAACTTG 58.340 45.455 0.00 0.00 0.00 3.16
689 691 3.070446 TGTGATCCTACGACCAAACTTGT 59.930 43.478 0.00 0.00 0.00 3.16
690 692 4.281435 TGTGATCCTACGACCAAACTTGTA 59.719 41.667 0.00 0.00 0.00 2.41
691 693 5.046878 TGTGATCCTACGACCAAACTTGTAT 60.047 40.000 0.00 0.00 0.00 2.29
692 694 5.291128 GTGATCCTACGACCAAACTTGTATG 59.709 44.000 0.00 0.00 0.00 2.39
705 707 6.363088 CCAAACTTGTATGTGCAAACTATGTG 59.637 38.462 0.00 0.00 0.00 3.21
715 717 5.241285 TGTGCAAACTATGTGATGTGATTGT 59.759 36.000 0.00 0.00 0.00 2.71
822 824 3.435671 GGGAGTATGTGTGTGCAAACTAC 59.564 47.826 8.83 5.68 0.00 2.73
841 843 8.506437 CAAACTACTCAACATTTGCATAGAAGA 58.494 33.333 0.00 0.00 0.00 2.87
875 877 1.227497 GGAGATGCCTGCTTCCGAG 60.227 63.158 1.80 0.00 0.00 4.63
919 933 0.469917 ACCACCACTCACTCCAACAG 59.530 55.000 0.00 0.00 0.00 3.16
920 934 0.886490 CCACCACTCACTCCAACAGC 60.886 60.000 0.00 0.00 0.00 4.40
921 935 1.069765 ACCACTCACTCCAACAGCG 59.930 57.895 0.00 0.00 0.00 5.18
982 1013 3.077556 CGTCACCTCCCTCCCCTG 61.078 72.222 0.00 0.00 0.00 4.45
1030 1061 2.798675 CGCGAGAGATCATCGGCG 60.799 66.667 18.40 17.17 44.86 6.46
1719 1783 2.685380 AACCTCCTGGAGCTCGGG 60.685 66.667 18.51 15.61 43.43 5.14
1848 1915 2.669569 GTCAGCCAAAGCCTGCGA 60.670 61.111 0.00 0.00 41.25 5.10
2089 3434 0.532573 CGTGGTATGGAGCTCACAGT 59.467 55.000 17.19 0.24 0.00 3.55
2119 3476 9.381033 TCCTAATTTAATTTGCATGTCAATTGG 57.619 29.630 5.42 6.10 34.12 3.16
2143 3500 7.341512 TGGTAATGCCAATTCATTTATCTGTCA 59.658 33.333 0.00 0.00 45.94 3.58
2182 3539 1.071699 GAGCAACAGTTGGTGGTAGGA 59.928 52.381 22.58 0.00 44.37 2.94
2489 4049 6.197903 AGTGGCTATGGTATATCTAGCATGA 58.802 40.000 11.80 0.00 43.91 3.07
2495 4055 8.298854 GCTATGGTATATCTAGCATGATCAGAG 58.701 40.741 11.80 0.00 43.91 3.35
2591 4339 8.210265 TCCAACTATGTATGCACTGATTGATTA 58.790 33.333 0.00 0.00 0.00 1.75
2592 4340 8.839343 CCAACTATGTATGCACTGATTGATTAA 58.161 33.333 0.00 0.00 0.00 1.40
2952 4718 6.140579 GCTTACAGCACCAAGATAGCTTGTA 61.141 44.000 18.79 2.12 44.25 2.41
3136 4921 5.220970 GCTTAGTGTGCCAAGACAAGTTTTA 60.221 40.000 0.00 0.00 0.00 1.52
3149 4935 3.258123 ACAAGTTTTATGTGGGATGTGGC 59.742 43.478 0.00 0.00 0.00 5.01
3181 4967 7.624134 GCAACAGATCGAATTTGATAGTGTTCA 60.624 37.037 22.26 0.00 35.21 3.18
3399 5235 5.841957 CAATTTTGCCTTAGTAGCCTGAT 57.158 39.130 0.00 0.00 0.00 2.90
3483 5333 0.386478 GACTTGGCTTGAGCGCTTTG 60.386 55.000 13.26 6.09 43.26 2.77
3542 5392 5.940470 AGATTCTGTTGCTAAAAGGGTAGTG 59.060 40.000 0.00 0.00 0.00 2.74
3592 5451 2.497675 TCAGAGCACCCATCAGTTCTAC 59.502 50.000 0.00 0.00 0.00 2.59
3593 5452 2.499289 CAGAGCACCCATCAGTTCTACT 59.501 50.000 0.00 0.00 0.00 2.57
3594 5453 2.763448 AGAGCACCCATCAGTTCTACTC 59.237 50.000 0.00 0.00 0.00 2.59
3595 5454 1.834263 AGCACCCATCAGTTCTACTCC 59.166 52.381 0.00 0.00 0.00 3.85
3596 5455 1.834263 GCACCCATCAGTTCTACTCCT 59.166 52.381 0.00 0.00 0.00 3.69
3597 5456 3.031736 GCACCCATCAGTTCTACTCCTA 58.968 50.000 0.00 0.00 0.00 2.94
3600 5459 5.304614 GCACCCATCAGTTCTACTCCTATTA 59.695 44.000 0.00 0.00 0.00 0.98
3612 5471 7.908827 TCTACTCCTATTAACTATCGCTCAG 57.091 40.000 0.00 0.00 0.00 3.35
3663 5529 7.222161 TGATTAGCAATCAAGCAGATCATACT 58.778 34.615 8.52 0.00 44.47 2.12
3677 5543 9.060347 AGCAGATCATACTACCACAAATAAATG 57.940 33.333 0.00 0.00 0.00 2.32
3752 5620 7.155328 AGGTAGCTGACATAGTACAATATTGC 58.845 38.462 15.48 0.15 0.00 3.56
3753 5621 7.015682 AGGTAGCTGACATAGTACAATATTGCT 59.984 37.037 15.48 7.95 0.00 3.91
3754 5622 7.657761 GGTAGCTGACATAGTACAATATTGCTT 59.342 37.037 15.48 4.02 0.00 3.91
3755 5623 9.046296 GTAGCTGACATAGTACAATATTGCTTT 57.954 33.333 15.48 3.68 0.00 3.51
3756 5624 8.511604 AGCTGACATAGTACAATATTGCTTTT 57.488 30.769 15.48 0.00 0.00 2.27
3757 5625 8.960591 AGCTGACATAGTACAATATTGCTTTTT 58.039 29.630 15.48 0.00 0.00 1.94
3811 5679 9.927081 AATCAAAGAAGTTCATAGGGATACAAT 57.073 29.630 5.50 0.00 39.74 2.71
3812 5680 8.737168 TCAAAGAAGTTCATAGGGATACAATG 57.263 34.615 5.50 0.00 39.74 2.82
3813 5681 8.548025 TCAAAGAAGTTCATAGGGATACAATGA 58.452 33.333 5.50 0.00 38.35 2.57
3814 5682 9.177608 CAAAGAAGTTCATAGGGATACAATGAA 57.822 33.333 5.50 1.73 43.86 2.57
3815 5683 9.927081 AAAGAAGTTCATAGGGATACAATGAAT 57.073 29.630 5.50 0.00 46.02 2.57
3816 5684 8.915057 AGAAGTTCATAGGGATACAATGAATG 57.085 34.615 5.50 0.00 46.02 2.67
3817 5685 8.497745 AGAAGTTCATAGGGATACAATGAATGT 58.502 33.333 5.50 1.13 46.02 2.71
3818 5686 8.682936 AAGTTCATAGGGATACAATGAATGTC 57.317 34.615 7.89 0.00 46.02 3.06
3819 5687 8.038862 AGTTCATAGGGATACAATGAATGTCT 57.961 34.615 7.89 0.22 46.02 3.41
3820 5688 7.935755 AGTTCATAGGGATACAATGAATGTCTG 59.064 37.037 7.89 0.00 46.02 3.51
3821 5689 6.772605 TCATAGGGATACAATGAATGTCTGG 58.227 40.000 0.00 0.00 42.70 3.86
3822 5690 6.329986 TCATAGGGATACAATGAATGTCTGGT 59.670 38.462 0.00 0.00 42.70 4.00
3823 5691 4.785301 AGGGATACAATGAATGTCTGGTG 58.215 43.478 0.00 0.00 42.70 4.17
3824 5692 3.885297 GGGATACAATGAATGTCTGGTGG 59.115 47.826 0.00 0.00 42.70 4.61
3825 5693 3.885297 GGATACAATGAATGTCTGGTGGG 59.115 47.826 0.00 0.00 42.70 4.61
3826 5694 2.978156 ACAATGAATGTCTGGTGGGT 57.022 45.000 0.00 0.00 37.96 4.51
3827 5695 3.243359 ACAATGAATGTCTGGTGGGTT 57.757 42.857 0.00 0.00 37.96 4.11
3828 5696 3.575805 ACAATGAATGTCTGGTGGGTTT 58.424 40.909 0.00 0.00 37.96 3.27
3829 5697 4.735369 ACAATGAATGTCTGGTGGGTTTA 58.265 39.130 0.00 0.00 37.96 2.01
3830 5698 5.332743 ACAATGAATGTCTGGTGGGTTTAT 58.667 37.500 0.00 0.00 37.96 1.40
3831 5699 5.185635 ACAATGAATGTCTGGTGGGTTTATG 59.814 40.000 0.00 0.00 37.96 1.90
3832 5700 4.649267 TGAATGTCTGGTGGGTTTATGA 57.351 40.909 0.00 0.00 0.00 2.15
3833 5701 4.588899 TGAATGTCTGGTGGGTTTATGAG 58.411 43.478 0.00 0.00 0.00 2.90
3834 5702 2.489938 TGTCTGGTGGGTTTATGAGC 57.510 50.000 0.00 0.00 0.00 4.26
3835 5703 1.004277 TGTCTGGTGGGTTTATGAGCC 59.996 52.381 0.00 0.00 46.43 4.70
3851 5719 2.262292 CCACAAATGGCGCCCAAG 59.738 61.111 26.77 13.90 39.82 3.61
3852 5720 2.274645 CCACAAATGGCGCCCAAGA 61.275 57.895 26.77 4.98 39.82 3.02
3853 5721 1.606885 CCACAAATGGCGCCCAAGAT 61.607 55.000 26.77 7.74 39.82 2.40
3854 5722 0.179129 CACAAATGGCGCCCAAGATC 60.179 55.000 26.77 0.00 36.95 2.75
3855 5723 1.322538 ACAAATGGCGCCCAAGATCC 61.323 55.000 26.77 0.00 36.95 3.36
3856 5724 1.000233 AAATGGCGCCCAAGATCCA 60.000 52.632 26.77 1.65 36.95 3.41
3857 5725 1.039233 AAATGGCGCCCAAGATCCAG 61.039 55.000 26.77 0.00 36.95 3.86
3858 5726 1.925285 AATGGCGCCCAAGATCCAGA 61.925 55.000 26.77 0.00 36.95 3.86
3859 5727 2.514824 GGCGCCCAAGATCCAGAC 60.515 66.667 18.11 0.00 0.00 3.51
3860 5728 2.586792 GCGCCCAAGATCCAGACT 59.413 61.111 0.00 0.00 0.00 3.24
3861 5729 1.817099 GCGCCCAAGATCCAGACTG 60.817 63.158 0.00 0.00 0.00 3.51
3862 5730 1.900351 CGCCCAAGATCCAGACTGA 59.100 57.895 3.32 0.00 0.00 3.41
3863 5731 0.250234 CGCCCAAGATCCAGACTGAA 59.750 55.000 3.32 0.00 0.00 3.02
3864 5732 1.339055 CGCCCAAGATCCAGACTGAAA 60.339 52.381 3.32 0.00 0.00 2.69
3865 5733 2.363683 GCCCAAGATCCAGACTGAAAG 58.636 52.381 3.32 0.00 42.29 2.62
3866 5734 2.363683 CCCAAGATCCAGACTGAAAGC 58.636 52.381 3.32 0.00 37.60 3.51
3867 5735 2.005451 CCAAGATCCAGACTGAAAGCG 58.995 52.381 3.32 0.00 37.60 4.68
3868 5736 2.613977 CCAAGATCCAGACTGAAAGCGT 60.614 50.000 3.32 0.00 37.60 5.07
3869 5737 2.376808 AGATCCAGACTGAAAGCGTG 57.623 50.000 3.32 0.00 37.60 5.34
3870 5738 1.620819 AGATCCAGACTGAAAGCGTGT 59.379 47.619 3.32 0.00 37.60 4.49
3871 5739 2.037772 AGATCCAGACTGAAAGCGTGTT 59.962 45.455 3.32 0.00 37.60 3.32
3872 5740 2.325583 TCCAGACTGAAAGCGTGTTT 57.674 45.000 3.32 0.00 37.60 2.83
3873 5741 3.462483 TCCAGACTGAAAGCGTGTTTA 57.538 42.857 3.32 0.00 37.60 2.01
3874 5742 3.390135 TCCAGACTGAAAGCGTGTTTAG 58.610 45.455 3.32 0.00 37.60 1.85
3875 5743 2.096218 CCAGACTGAAAGCGTGTTTAGC 60.096 50.000 3.32 0.00 37.60 3.09
3876 5744 1.792949 AGACTGAAAGCGTGTTTAGCG 59.207 47.619 0.00 0.00 37.60 4.26
3877 5745 1.790623 GACTGAAAGCGTGTTTAGCGA 59.209 47.619 0.00 0.00 37.60 4.93
3878 5746 1.792949 ACTGAAAGCGTGTTTAGCGAG 59.207 47.619 0.00 0.00 37.60 5.03
3879 5747 2.058798 CTGAAAGCGTGTTTAGCGAGA 58.941 47.619 0.00 0.00 40.04 4.04
3880 5748 1.790623 TGAAAGCGTGTTTAGCGAGAC 59.209 47.619 0.00 0.00 40.04 3.36
3881 5749 2.059541 GAAAGCGTGTTTAGCGAGACT 58.940 47.619 0.00 0.00 40.04 3.24
3882 5750 3.240069 GAAAGCGTGTTTAGCGAGACTA 58.760 45.455 0.00 0.00 40.04 2.59
3883 5751 3.505464 AAGCGTGTTTAGCGAGACTAT 57.495 42.857 0.00 0.00 40.04 2.12
3884 5752 2.798680 AGCGTGTTTAGCGAGACTATG 58.201 47.619 0.00 0.00 40.04 2.23
3885 5753 1.255600 GCGTGTTTAGCGAGACTATGC 59.744 52.381 0.00 0.00 0.00 3.14
3886 5754 1.513178 CGTGTTTAGCGAGACTATGCG 59.487 52.381 0.00 0.00 35.87 4.73
3891 5759 2.413351 GCGAGACTATGCGCCTCA 59.587 61.111 4.18 0.00 46.93 3.86
3892 5760 1.226974 GCGAGACTATGCGCCTCAA 60.227 57.895 4.18 0.00 46.93 3.02
3893 5761 0.598680 GCGAGACTATGCGCCTCAAT 60.599 55.000 4.18 0.00 46.93 2.57
3894 5762 1.335964 GCGAGACTATGCGCCTCAATA 60.336 52.381 4.18 0.00 46.93 1.90
3895 5763 2.672478 GCGAGACTATGCGCCTCAATAT 60.672 50.000 4.18 0.00 46.93 1.28
3896 5764 3.579709 CGAGACTATGCGCCTCAATATT 58.420 45.455 4.18 0.00 0.00 1.28
3897 5765 3.366121 CGAGACTATGCGCCTCAATATTG 59.634 47.826 9.29 9.29 0.00 1.90
3898 5766 3.668447 AGACTATGCGCCTCAATATTGG 58.332 45.455 15.36 6.32 0.00 3.16
3899 5767 3.071602 AGACTATGCGCCTCAATATTGGT 59.928 43.478 15.36 2.07 0.00 3.67
3900 5768 3.141398 ACTATGCGCCTCAATATTGGTG 58.859 45.455 15.36 8.16 36.95 4.17
3901 5769 1.321474 ATGCGCCTCAATATTGGTGG 58.679 50.000 15.36 17.01 34.66 4.61
3902 5770 0.034574 TGCGCCTCAATATTGGTGGT 60.035 50.000 21.18 0.00 34.66 4.16
3903 5771 1.102978 GCGCCTCAATATTGGTGGTT 58.897 50.000 21.18 0.00 34.66 3.67
3904 5772 1.065551 GCGCCTCAATATTGGTGGTTC 59.934 52.381 21.18 13.53 34.66 3.62
3905 5773 2.643551 CGCCTCAATATTGGTGGTTCT 58.356 47.619 21.18 0.00 0.00 3.01
3906 5774 3.804036 CGCCTCAATATTGGTGGTTCTA 58.196 45.455 21.18 1.20 0.00 2.10
3907 5775 3.560068 CGCCTCAATATTGGTGGTTCTAC 59.440 47.826 21.18 9.71 0.00 2.59
3908 5776 3.883489 GCCTCAATATTGGTGGTTCTACC 59.117 47.826 21.18 0.00 41.24 3.18
3909 5777 4.385310 GCCTCAATATTGGTGGTTCTACCT 60.385 45.833 21.18 0.00 41.43 3.08
3910 5778 5.755849 CCTCAATATTGGTGGTTCTACCTT 58.244 41.667 15.36 0.00 41.43 3.50
3911 5779 5.823045 CCTCAATATTGGTGGTTCTACCTTC 59.177 44.000 15.36 0.00 41.43 3.46
3912 5780 5.424757 TCAATATTGGTGGTTCTACCTTCG 58.575 41.667 15.36 0.00 41.43 3.79
3913 5781 5.188163 TCAATATTGGTGGTTCTACCTTCGA 59.812 40.000 15.36 0.00 41.43 3.71
3914 5782 5.687166 ATATTGGTGGTTCTACCTTCGAA 57.313 39.130 0.00 0.00 41.43 3.71
3915 5783 3.396260 TTGGTGGTTCTACCTTCGAAG 57.604 47.619 18.51 18.51 41.43 3.79
3916 5784 2.600790 TGGTGGTTCTACCTTCGAAGA 58.399 47.619 26.61 6.56 41.43 2.87
3917 5785 3.170717 TGGTGGTTCTACCTTCGAAGAT 58.829 45.455 26.61 12.79 41.43 2.40
3918 5786 3.056107 TGGTGGTTCTACCTTCGAAGATG 60.056 47.826 26.61 12.98 41.43 2.90
3919 5787 3.194968 GGTGGTTCTACCTTCGAAGATGA 59.805 47.826 26.61 16.70 39.58 2.92
3920 5788 4.322499 GGTGGTTCTACCTTCGAAGATGAA 60.322 45.833 26.61 20.88 39.58 2.57
3921 5789 4.865365 GTGGTTCTACCTTCGAAGATGAAG 59.135 45.833 26.61 16.04 43.98 3.02
3930 5798 5.060662 CTTCGAAGATGAAGGTACACTGA 57.939 43.478 20.74 0.00 41.32 3.41
3931 5799 5.655488 CTTCGAAGATGAAGGTACACTGAT 58.345 41.667 20.74 0.00 41.32 2.90
3932 5800 4.998788 TCGAAGATGAAGGTACACTGATG 58.001 43.478 0.00 0.00 0.00 3.07
3933 5801 4.705023 TCGAAGATGAAGGTACACTGATGA 59.295 41.667 0.00 0.00 0.00 2.92
3934 5802 5.185056 TCGAAGATGAAGGTACACTGATGAA 59.815 40.000 0.00 0.00 0.00 2.57
3935 5803 5.869344 CGAAGATGAAGGTACACTGATGAAA 59.131 40.000 0.00 0.00 0.00 2.69
3936 5804 6.035435 CGAAGATGAAGGTACACTGATGAAAG 59.965 42.308 0.00 0.00 0.00 2.62
3937 5805 6.365970 AGATGAAGGTACACTGATGAAAGT 57.634 37.500 0.00 0.00 0.00 2.66
3938 5806 6.402222 AGATGAAGGTACACTGATGAAAGTC 58.598 40.000 0.00 0.00 0.00 3.01
3939 5807 5.808366 TGAAGGTACACTGATGAAAGTCT 57.192 39.130 0.00 0.00 0.00 3.24
3940 5808 5.784177 TGAAGGTACACTGATGAAAGTCTC 58.216 41.667 0.00 0.00 0.00 3.36
3941 5809 5.540337 TGAAGGTACACTGATGAAAGTCTCT 59.460 40.000 0.00 0.00 0.00 3.10
3942 5810 6.042093 TGAAGGTACACTGATGAAAGTCTCTT 59.958 38.462 0.00 0.00 0.00 2.85
3943 5811 5.788450 AGGTACACTGATGAAAGTCTCTTG 58.212 41.667 0.00 0.00 0.00 3.02
3944 5812 5.540337 AGGTACACTGATGAAAGTCTCTTGA 59.460 40.000 0.00 0.00 0.00 3.02
3945 5813 6.212388 AGGTACACTGATGAAAGTCTCTTGAT 59.788 38.462 0.00 0.00 0.00 2.57
3946 5814 6.312426 GGTACACTGATGAAAGTCTCTTGATG 59.688 42.308 0.00 0.00 0.00 3.07
3947 5815 5.862845 ACACTGATGAAAGTCTCTTGATGT 58.137 37.500 0.00 0.00 0.00 3.06
3948 5816 5.931146 ACACTGATGAAAGTCTCTTGATGTC 59.069 40.000 0.00 0.00 0.00 3.06
3949 5817 6.164876 CACTGATGAAAGTCTCTTGATGTCT 58.835 40.000 0.00 0.00 0.00 3.41
3950 5818 6.310956 CACTGATGAAAGTCTCTTGATGTCTC 59.689 42.308 0.00 0.00 0.00 3.36
3951 5819 6.014755 ACTGATGAAAGTCTCTTGATGTCTCA 60.015 38.462 0.00 0.00 0.00 3.27
3952 5820 6.762333 TGATGAAAGTCTCTTGATGTCTCAA 58.238 36.000 0.00 0.00 39.07 3.02
3953 5821 6.648310 TGATGAAAGTCTCTTGATGTCTCAAC 59.352 38.462 0.00 0.00 36.46 3.18
3954 5822 5.917462 TGAAAGTCTCTTGATGTCTCAACA 58.083 37.500 0.00 0.00 36.46 3.33
3955 5823 6.348498 TGAAAGTCTCTTGATGTCTCAACAA 58.652 36.000 0.00 0.00 39.30 2.83
3956 5824 6.994496 TGAAAGTCTCTTGATGTCTCAACAAT 59.006 34.615 0.00 0.00 39.30 2.71
3957 5825 7.172190 TGAAAGTCTCTTGATGTCTCAACAATC 59.828 37.037 0.00 0.00 39.30 2.67
3958 5826 6.357579 AGTCTCTTGATGTCTCAACAATCT 57.642 37.500 0.00 0.00 39.30 2.40
3959 5827 6.397272 AGTCTCTTGATGTCTCAACAATCTC 58.603 40.000 0.00 0.00 39.30 2.75
3960 5828 5.580297 GTCTCTTGATGTCTCAACAATCTCC 59.420 44.000 0.00 0.00 39.30 3.71
3961 5829 5.483231 TCTCTTGATGTCTCAACAATCTCCT 59.517 40.000 0.00 0.00 39.30 3.69
3962 5830 6.013898 TCTCTTGATGTCTCAACAATCTCCTT 60.014 38.462 0.00 0.00 39.30 3.36
3963 5831 5.936372 TCTTGATGTCTCAACAATCTCCTTG 59.064 40.000 0.00 0.00 39.30 3.61
3964 5832 5.488262 TGATGTCTCAACAATCTCCTTGA 57.512 39.130 0.00 0.00 39.30 3.02
3965 5833 5.240891 TGATGTCTCAACAATCTCCTTGAC 58.759 41.667 0.00 0.00 39.30 3.18
3966 5834 4.963318 TGTCTCAACAATCTCCTTGACT 57.037 40.909 0.00 0.00 38.29 3.41
3967 5835 4.635223 TGTCTCAACAATCTCCTTGACTG 58.365 43.478 0.00 0.00 38.29 3.51
3968 5836 3.434984 GTCTCAACAATCTCCTTGACTGC 59.565 47.826 0.00 0.00 38.29 4.40
3969 5837 2.414481 CTCAACAATCTCCTTGACTGCG 59.586 50.000 0.00 0.00 38.29 5.18
3970 5838 1.135859 CAACAATCTCCTTGACTGCGC 60.136 52.381 0.00 0.00 38.29 6.09
3971 5839 0.322975 ACAATCTCCTTGACTGCGCT 59.677 50.000 9.73 0.00 38.29 5.92
3972 5840 1.271054 ACAATCTCCTTGACTGCGCTT 60.271 47.619 9.73 0.00 38.29 4.68
3973 5841 1.129998 CAATCTCCTTGACTGCGCTTG 59.870 52.381 9.73 3.92 36.97 4.01
3974 5842 1.023513 ATCTCCTTGACTGCGCTTGC 61.024 55.000 9.73 0.00 39.78 4.01
3983 5851 2.817834 TGCGCTTGCATACGTCCC 60.818 61.111 9.73 0.00 45.56 4.46
3984 5852 2.511600 GCGCTTGCATACGTCCCT 60.512 61.111 0.00 0.00 38.92 4.20
3985 5853 2.526120 GCGCTTGCATACGTCCCTC 61.526 63.158 0.00 0.00 38.92 4.30
3986 5854 1.883084 CGCTTGCATACGTCCCTCC 60.883 63.158 0.00 0.00 0.00 4.30
3987 5855 1.523938 GCTTGCATACGTCCCTCCC 60.524 63.158 0.00 0.00 0.00 4.30
3988 5856 1.227263 CTTGCATACGTCCCTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
3989 5857 1.956629 CTTGCATACGTCCCTCCCGT 61.957 60.000 0.00 0.00 42.06 5.28
3990 5858 0.683828 TTGCATACGTCCCTCCCGTA 60.684 55.000 0.00 0.00 44.02 4.02
3991 5859 1.361632 GCATACGTCCCTCCCGTAC 59.638 63.158 0.00 0.00 42.86 3.67
3992 5860 2.036236 CATACGTCCCTCCCGTACC 58.964 63.158 0.00 0.00 42.86 3.34
3993 5861 0.752743 CATACGTCCCTCCCGTACCA 60.753 60.000 0.00 0.00 42.86 3.25
3994 5862 0.186873 ATACGTCCCTCCCGTACCAT 59.813 55.000 0.00 0.00 42.86 3.55
3995 5863 0.752743 TACGTCCCTCCCGTACCATG 60.753 60.000 0.00 0.00 39.60 3.66
3996 5864 1.755395 CGTCCCTCCCGTACCATGA 60.755 63.158 0.00 0.00 0.00 3.07
3997 5865 1.113517 CGTCCCTCCCGTACCATGAT 61.114 60.000 0.00 0.00 0.00 2.45
3998 5866 1.129058 GTCCCTCCCGTACCATGATT 58.871 55.000 0.00 0.00 0.00 2.57
3999 5867 1.128200 TCCCTCCCGTACCATGATTG 58.872 55.000 0.00 0.00 0.00 2.67
4000 5868 1.128200 CCCTCCCGTACCATGATTGA 58.872 55.000 0.00 0.00 0.00 2.57
4001 5869 1.699634 CCCTCCCGTACCATGATTGAT 59.300 52.381 0.00 0.00 0.00 2.57
4002 5870 2.903784 CCCTCCCGTACCATGATTGATA 59.096 50.000 0.00 0.00 0.00 2.15
4003 5871 3.519510 CCCTCCCGTACCATGATTGATAT 59.480 47.826 0.00 0.00 0.00 1.63
4004 5872 4.383118 CCCTCCCGTACCATGATTGATATC 60.383 50.000 0.00 0.00 0.00 1.63
4005 5873 4.222810 CCTCCCGTACCATGATTGATATCA 59.777 45.833 0.00 0.00 44.52 2.15
4007 5875 6.373005 TCCCGTACCATGATTGATATCATT 57.627 37.500 6.17 2.68 46.88 2.57
4008 5876 7.364673 CCTCCCGTACCATGATTGATATCATTA 60.365 40.741 6.17 0.00 46.88 1.90
4009 5877 7.912719 TCCCGTACCATGATTGATATCATTAA 58.087 34.615 6.17 0.00 46.88 1.40
4010 5878 7.822334 TCCCGTACCATGATTGATATCATTAAC 59.178 37.037 6.17 0.00 46.88 2.01
4011 5879 7.824289 CCCGTACCATGATTGATATCATTAACT 59.176 37.037 6.17 0.00 46.88 2.24
4012 5880 9.869757 CCGTACCATGATTGATATCATTAACTA 57.130 33.333 6.17 0.00 46.88 2.24
4016 5884 9.507329 ACCATGATTGATATCATTAACTACACC 57.493 33.333 6.17 0.00 46.88 4.16
4017 5885 9.730705 CCATGATTGATATCATTAACTACACCT 57.269 33.333 6.17 0.00 46.88 4.00
4020 5888 9.559732 TGATTGATATCATTAACTACACCTTGG 57.440 33.333 6.17 0.00 35.87 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 3.917988 TCTCTACAGAGTTGCACACATG 58.082 45.455 6.16 0.00 42.60 3.21
443 444 5.104569 TGGAGACTGCATACATGGTTTGATA 60.105 40.000 0.00 0.00 0.00 2.15
540 541 7.358066 GGTCAATTAGCAATCACATCACATAG 58.642 38.462 0.00 0.00 0.00 2.23
643 645 7.340232 ACATCACATAGTTTGCCATGAACTATT 59.660 33.333 13.06 5.62 43.99 1.73
654 656 5.050769 CGTAGGATCACATCACATAGTTTGC 60.051 44.000 0.00 0.00 0.00 3.68
655 657 6.199154 GTCGTAGGATCACATCACATAGTTTG 59.801 42.308 0.00 0.00 0.00 2.93
656 658 6.273825 GTCGTAGGATCACATCACATAGTTT 58.726 40.000 0.00 0.00 0.00 2.66
657 659 5.221263 GGTCGTAGGATCACATCACATAGTT 60.221 44.000 0.00 0.00 0.00 2.24
658 660 4.278669 GGTCGTAGGATCACATCACATAGT 59.721 45.833 0.00 0.00 0.00 2.12
659 661 4.278419 TGGTCGTAGGATCACATCACATAG 59.722 45.833 0.00 0.00 0.00 2.23
660 662 4.211920 TGGTCGTAGGATCACATCACATA 58.788 43.478 0.00 0.00 0.00 2.29
661 663 3.031013 TGGTCGTAGGATCACATCACAT 58.969 45.455 0.00 0.00 0.00 3.21
662 664 2.452505 TGGTCGTAGGATCACATCACA 58.547 47.619 0.00 0.00 0.00 3.58
663 665 3.520290 TTGGTCGTAGGATCACATCAC 57.480 47.619 0.00 0.00 31.60 3.06
664 666 3.513912 AGTTTGGTCGTAGGATCACATCA 59.486 43.478 0.00 0.00 31.60 3.07
665 667 4.124851 AGTTTGGTCGTAGGATCACATC 57.875 45.455 0.00 0.00 31.60 3.06
666 668 4.253685 CAAGTTTGGTCGTAGGATCACAT 58.746 43.478 0.00 0.00 31.60 3.21
667 669 3.070446 ACAAGTTTGGTCGTAGGATCACA 59.930 43.478 0.00 0.00 31.60 3.58
668 670 3.660865 ACAAGTTTGGTCGTAGGATCAC 58.339 45.455 0.00 0.00 31.60 3.06
669 671 5.046878 ACATACAAGTTTGGTCGTAGGATCA 60.047 40.000 0.00 0.00 0.00 2.92
670 672 5.291128 CACATACAAGTTTGGTCGTAGGATC 59.709 44.000 0.00 0.00 0.00 3.36
671 673 5.175859 CACATACAAGTTTGGTCGTAGGAT 58.824 41.667 0.00 0.00 0.00 3.24
672 674 4.562082 CACATACAAGTTTGGTCGTAGGA 58.438 43.478 0.00 0.00 0.00 2.94
673 675 3.124636 GCACATACAAGTTTGGTCGTAGG 59.875 47.826 0.00 0.00 0.00 3.18
674 676 3.743911 TGCACATACAAGTTTGGTCGTAG 59.256 43.478 0.00 0.00 0.00 3.51
675 677 3.729966 TGCACATACAAGTTTGGTCGTA 58.270 40.909 0.00 0.00 0.00 3.43
676 678 2.566913 TGCACATACAAGTTTGGTCGT 58.433 42.857 0.00 0.00 0.00 4.34
677 679 3.617540 TTGCACATACAAGTTTGGTCG 57.382 42.857 0.00 0.00 0.00 4.79
678 680 4.932146 AGTTTGCACATACAAGTTTGGTC 58.068 39.130 0.00 0.00 0.00 4.02
679 681 6.040391 ACATAGTTTGCACATACAAGTTTGGT 59.960 34.615 0.00 0.00 0.00 3.67
680 682 6.363088 CACATAGTTTGCACATACAAGTTTGG 59.637 38.462 0.00 0.00 0.00 3.28
681 683 7.138081 TCACATAGTTTGCACATACAAGTTTG 58.862 34.615 0.00 0.00 0.00 2.93
682 684 7.270757 TCACATAGTTTGCACATACAAGTTT 57.729 32.000 0.00 0.00 0.00 2.66
683 685 6.875948 TCACATAGTTTGCACATACAAGTT 57.124 33.333 0.00 0.00 0.00 2.66
684 686 6.430925 ACATCACATAGTTTGCACATACAAGT 59.569 34.615 0.00 0.00 0.00 3.16
685 687 6.744082 CACATCACATAGTTTGCACATACAAG 59.256 38.462 0.00 0.00 0.00 3.16
686 688 6.429385 TCACATCACATAGTTTGCACATACAA 59.571 34.615 0.00 0.00 0.00 2.41
687 689 5.936956 TCACATCACATAGTTTGCACATACA 59.063 36.000 0.00 0.00 0.00 2.29
688 690 6.421377 TCACATCACATAGTTTGCACATAC 57.579 37.500 0.00 0.00 0.00 2.39
689 691 7.121020 ACAATCACATCACATAGTTTGCACATA 59.879 33.333 0.00 0.00 0.00 2.29
690 692 6.071784 ACAATCACATCACATAGTTTGCACAT 60.072 34.615 0.00 0.00 0.00 3.21
691 693 5.241285 ACAATCACATCACATAGTTTGCACA 59.759 36.000 0.00 0.00 0.00 4.57
692 694 5.702865 ACAATCACATCACATAGTTTGCAC 58.297 37.500 0.00 0.00 0.00 4.57
729 731 9.829507 TTTACAACCACATCATTTTCTCAAAAT 57.170 25.926 0.00 0.00 41.57 1.82
788 790 5.995282 CACACATACTCCCTAGTGTCAAAAA 59.005 40.000 0.00 0.00 42.79 1.94
789 791 5.071250 ACACACATACTCCCTAGTGTCAAAA 59.929 40.000 0.00 0.00 42.79 2.44
790 792 4.591498 ACACACATACTCCCTAGTGTCAAA 59.409 41.667 0.00 0.00 42.79 2.69
791 793 4.021456 CACACACATACTCCCTAGTGTCAA 60.021 45.833 0.00 0.00 42.79 3.18
792 794 3.509967 CACACACATACTCCCTAGTGTCA 59.490 47.826 0.00 0.00 42.79 3.58
793 795 3.676324 GCACACACATACTCCCTAGTGTC 60.676 52.174 0.00 0.00 42.79 3.67
794 796 2.233922 GCACACACATACTCCCTAGTGT 59.766 50.000 0.00 0.00 45.29 3.55
795 797 2.233676 TGCACACACATACTCCCTAGTG 59.766 50.000 0.00 0.00 36.36 2.74
796 798 2.536066 TGCACACACATACTCCCTAGT 58.464 47.619 0.00 0.00 39.91 2.57
797 799 3.610040 TTGCACACACATACTCCCTAG 57.390 47.619 0.00 0.00 0.00 3.02
798 800 3.326588 AGTTTGCACACACATACTCCCTA 59.673 43.478 5.67 0.00 27.16 3.53
799 801 2.106511 AGTTTGCACACACATACTCCCT 59.893 45.455 5.67 0.00 27.16 4.20
800 802 2.504367 AGTTTGCACACACATACTCCC 58.496 47.619 5.67 0.00 27.16 4.30
801 803 4.315803 AGTAGTTTGCACACACATACTCC 58.684 43.478 5.67 0.00 34.33 3.85
802 804 4.988540 TGAGTAGTTTGCACACACATACTC 59.011 41.667 17.57 17.57 36.64 2.59
803 805 4.956085 TGAGTAGTTTGCACACACATACT 58.044 39.130 5.67 4.57 36.14 2.12
804 806 5.007234 TGTTGAGTAGTTTGCACACACATAC 59.993 40.000 5.67 0.00 0.00 2.39
805 807 5.119694 TGTTGAGTAGTTTGCACACACATA 58.880 37.500 5.67 0.00 0.00 2.29
810 812 5.871531 CAAATGTTGAGTAGTTTGCACAC 57.128 39.130 0.00 0.00 0.00 3.82
822 824 8.024865 TGAAACATCTTCTATGCAAATGTTGAG 58.975 33.333 0.00 0.00 39.71 3.02
841 843 0.032813 CTCCTGGGCCCATGAAACAT 60.033 55.000 28.82 0.00 0.00 2.71
875 877 1.551883 AGCAGAATGTTGGGCCAAATC 59.448 47.619 22.82 18.74 39.31 2.17
1470 1534 2.033194 GCAGGTAAGGTGGACGCAC 61.033 63.158 0.00 0.00 0.00 5.34
1653 1717 4.083862 GTGTCCGGGAGCCTCCAC 62.084 72.222 13.90 2.71 38.64 4.02
1848 1915 1.065126 GTAAGGGCCAGCTGAAGACAT 60.065 52.381 17.39 0.00 0.00 3.06
2079 3424 9.771534 AATTAAATTAGGATCTACTGTGAGCTC 57.228 33.333 6.82 6.82 0.00 4.09
2119 3476 9.754382 AATGACAGATAAATGAATTGGCATTAC 57.246 29.630 2.25 0.00 43.62 1.89
2131 3488 2.358582 TGCGCCCAATGACAGATAAATG 59.641 45.455 4.18 0.00 0.00 2.32
2132 3489 2.653726 TGCGCCCAATGACAGATAAAT 58.346 42.857 4.18 0.00 0.00 1.40
2555 4290 9.307121 GTGCATACATAGTTGGATGATAGATAC 57.693 37.037 2.36 0.00 45.72 2.24
2562 4297 5.612725 TCAGTGCATACATAGTTGGATGA 57.387 39.130 2.36 0.00 45.72 2.92
2591 4339 0.190815 AGGTGGGGGACTGCAAATTT 59.809 50.000 0.00 0.00 0.00 1.82
2592 4340 0.190815 AAGGTGGGGGACTGCAAATT 59.809 50.000 0.00 0.00 0.00 1.82
2952 4718 2.758648 GGTCAGCCCACCCAAAATT 58.241 52.632 0.00 0.00 0.00 1.82
3102 4887 1.202348 GCACACTAAGCATTCCCCAAC 59.798 52.381 0.00 0.00 0.00 3.77
3136 4921 1.304282 GTCCAGCCACATCCCACAT 59.696 57.895 0.00 0.00 0.00 3.21
3149 4935 1.645034 ATTCGATCTGTTGCGTCCAG 58.355 50.000 0.00 0.00 0.00 3.86
3364 5168 0.688487 AAAATTGCATGCTGGCTGGT 59.312 45.000 20.33 0.00 34.04 4.00
3527 5377 6.177610 CCAAACTATCACTACCCTTTTAGCA 58.822 40.000 0.00 0.00 0.00 3.49
3542 5392 7.068348 TCTGATATATCCTACGGCCAAACTATC 59.932 40.741 10.25 0.00 0.00 2.08
3592 5451 8.873215 TTTTTCTGAGCGATAGTTAATAGGAG 57.127 34.615 0.00 0.00 39.35 3.69
3625 5484 3.609853 TGCTAATCAACCCAGCTAACAG 58.390 45.455 0.00 0.00 36.26 3.16
3719 5587 8.978472 TGTACTATGTCAGCTACCTTAATTTCT 58.022 33.333 0.00 0.00 0.00 2.52
3785 5653 9.927081 ATTGTATCCCTATGAACTTCTTTGATT 57.073 29.630 0.00 0.00 0.00 2.57
3786 5654 9.347240 CATTGTATCCCTATGAACTTCTTTGAT 57.653 33.333 0.00 0.00 0.00 2.57
3787 5655 8.548025 TCATTGTATCCCTATGAACTTCTTTGA 58.452 33.333 0.00 0.00 33.28 2.69
3788 5656 8.737168 TCATTGTATCCCTATGAACTTCTTTG 57.263 34.615 0.00 0.00 33.28 2.77
3789 5657 9.927081 ATTCATTGTATCCCTATGAACTTCTTT 57.073 29.630 0.00 0.00 44.34 2.52
3790 5658 9.347240 CATTCATTGTATCCCTATGAACTTCTT 57.653 33.333 0.00 0.00 44.34 2.52
3791 5659 8.497745 ACATTCATTGTATCCCTATGAACTTCT 58.502 33.333 0.00 0.00 44.34 2.85
3792 5660 8.682936 ACATTCATTGTATCCCTATGAACTTC 57.317 34.615 0.00 0.00 44.34 3.01
3793 5661 8.497745 AGACATTCATTGTATCCCTATGAACTT 58.502 33.333 0.00 0.00 44.34 2.66
3794 5662 7.935755 CAGACATTCATTGTATCCCTATGAACT 59.064 37.037 0.00 0.00 44.34 3.01
3795 5663 7.173907 CCAGACATTCATTGTATCCCTATGAAC 59.826 40.741 0.00 0.00 44.34 3.18
3796 5664 7.147320 ACCAGACATTCATTGTATCCCTATGAA 60.147 37.037 0.00 0.00 45.17 2.57
3797 5665 6.329986 ACCAGACATTCATTGTATCCCTATGA 59.670 38.462 0.00 0.00 39.18 2.15
3798 5666 6.429078 CACCAGACATTCATTGTATCCCTATG 59.571 42.308 0.00 0.00 39.18 2.23
3799 5667 6.466326 CCACCAGACATTCATTGTATCCCTAT 60.466 42.308 0.00 0.00 39.18 2.57
3800 5668 5.163205 CCACCAGACATTCATTGTATCCCTA 60.163 44.000 0.00 0.00 39.18 3.53
3801 5669 4.385643 CCACCAGACATTCATTGTATCCCT 60.386 45.833 0.00 0.00 39.18 4.20
3802 5670 3.885297 CCACCAGACATTCATTGTATCCC 59.115 47.826 0.00 0.00 39.18 3.85
3803 5671 3.885297 CCCACCAGACATTCATTGTATCC 59.115 47.826 0.00 0.00 39.18 2.59
3804 5672 4.526970 ACCCACCAGACATTCATTGTATC 58.473 43.478 0.00 0.00 39.18 2.24
3805 5673 4.591321 ACCCACCAGACATTCATTGTAT 57.409 40.909 0.00 0.00 39.18 2.29
3806 5674 4.380843 AACCCACCAGACATTCATTGTA 57.619 40.909 0.00 0.00 39.18 2.41
3807 5675 2.978156 ACCCACCAGACATTCATTGT 57.022 45.000 0.00 0.00 42.79 2.71
3808 5676 5.418524 TCATAAACCCACCAGACATTCATTG 59.581 40.000 0.00 0.00 0.00 2.82
3809 5677 5.579047 TCATAAACCCACCAGACATTCATT 58.421 37.500 0.00 0.00 0.00 2.57
3810 5678 5.191727 TCATAAACCCACCAGACATTCAT 57.808 39.130 0.00 0.00 0.00 2.57
3811 5679 4.588899 CTCATAAACCCACCAGACATTCA 58.411 43.478 0.00 0.00 0.00 2.57
3812 5680 3.378427 GCTCATAAACCCACCAGACATTC 59.622 47.826 0.00 0.00 0.00 2.67
3813 5681 3.356290 GCTCATAAACCCACCAGACATT 58.644 45.455 0.00 0.00 0.00 2.71
3814 5682 2.357154 GGCTCATAAACCCACCAGACAT 60.357 50.000 0.00 0.00 0.00 3.06
3815 5683 1.004277 GGCTCATAAACCCACCAGACA 59.996 52.381 0.00 0.00 0.00 3.41
3816 5684 1.004277 TGGCTCATAAACCCACCAGAC 59.996 52.381 0.00 0.00 0.00 3.51
3817 5685 1.004277 GTGGCTCATAAACCCACCAGA 59.996 52.381 0.00 0.00 42.44 3.86
3818 5686 1.271871 TGTGGCTCATAAACCCACCAG 60.272 52.381 6.58 0.00 46.54 4.00
3819 5687 0.774276 TGTGGCTCATAAACCCACCA 59.226 50.000 6.58 0.00 46.54 4.17
3820 5688 1.917872 TTGTGGCTCATAAACCCACC 58.082 50.000 6.58 0.00 46.54 4.61
3822 5690 2.830923 CCATTTGTGGCTCATAAACCCA 59.169 45.455 0.00 0.00 28.18 4.51
3823 5691 3.525268 CCATTTGTGGCTCATAAACCC 57.475 47.619 0.00 0.00 28.18 4.11
3834 5702 1.606885 ATCTTGGGCGCCATTTGTGG 61.607 55.000 30.85 10.41 31.53 4.17
3835 5703 0.179129 GATCTTGGGCGCCATTTGTG 60.179 55.000 30.85 11.58 31.53 3.33
3836 5704 1.322538 GGATCTTGGGCGCCATTTGT 61.323 55.000 30.85 11.00 31.53 2.83
3837 5705 1.321805 TGGATCTTGGGCGCCATTTG 61.322 55.000 30.85 14.98 31.53 2.32
3838 5706 1.000233 TGGATCTTGGGCGCCATTT 60.000 52.632 30.85 7.62 31.53 2.32
3839 5707 1.454479 CTGGATCTTGGGCGCCATT 60.454 57.895 30.85 7.20 31.53 3.16
3840 5708 2.194056 CTGGATCTTGGGCGCCAT 59.806 61.111 30.85 13.55 31.53 4.40
3841 5709 3.008517 TCTGGATCTTGGGCGCCA 61.009 61.111 30.85 12.04 0.00 5.69
3842 5710 2.514824 GTCTGGATCTTGGGCGCC 60.515 66.667 21.18 21.18 0.00 6.53
3843 5711 1.817099 CAGTCTGGATCTTGGGCGC 60.817 63.158 0.00 0.00 0.00 6.53
3844 5712 0.250234 TTCAGTCTGGATCTTGGGCG 59.750 55.000 0.00 0.00 0.00 6.13
3845 5713 2.363683 CTTTCAGTCTGGATCTTGGGC 58.636 52.381 0.00 0.00 0.00 5.36
3846 5714 2.363683 GCTTTCAGTCTGGATCTTGGG 58.636 52.381 0.00 0.00 0.00 4.12
3847 5715 2.005451 CGCTTTCAGTCTGGATCTTGG 58.995 52.381 0.00 0.00 0.00 3.61
3848 5716 2.414481 CACGCTTTCAGTCTGGATCTTG 59.586 50.000 0.00 0.00 0.00 3.02
3849 5717 2.037772 ACACGCTTTCAGTCTGGATCTT 59.962 45.455 0.00 0.00 0.00 2.40
3850 5718 1.620819 ACACGCTTTCAGTCTGGATCT 59.379 47.619 0.00 0.00 0.00 2.75
3851 5719 2.086054 ACACGCTTTCAGTCTGGATC 57.914 50.000 0.00 0.00 0.00 3.36
3852 5720 2.550830 AACACGCTTTCAGTCTGGAT 57.449 45.000 0.00 0.00 0.00 3.41
3853 5721 2.325583 AAACACGCTTTCAGTCTGGA 57.674 45.000 0.00 0.00 0.00 3.86
3854 5722 2.096218 GCTAAACACGCTTTCAGTCTGG 60.096 50.000 0.00 0.00 0.00 3.86
3855 5723 2.410262 CGCTAAACACGCTTTCAGTCTG 60.410 50.000 0.00 0.00 0.00 3.51
3856 5724 1.792949 CGCTAAACACGCTTTCAGTCT 59.207 47.619 0.00 0.00 0.00 3.24
3857 5725 1.790623 TCGCTAAACACGCTTTCAGTC 59.209 47.619 0.00 0.00 0.00 3.51
3858 5726 1.792949 CTCGCTAAACACGCTTTCAGT 59.207 47.619 0.00 0.00 0.00 3.41
3859 5727 2.058798 TCTCGCTAAACACGCTTTCAG 58.941 47.619 0.00 0.00 0.00 3.02
3860 5728 1.790623 GTCTCGCTAAACACGCTTTCA 59.209 47.619 0.00 0.00 0.00 2.69
3861 5729 2.059541 AGTCTCGCTAAACACGCTTTC 58.940 47.619 0.00 0.00 0.00 2.62
3862 5730 2.150397 AGTCTCGCTAAACACGCTTT 57.850 45.000 0.00 0.00 0.00 3.51
3863 5731 3.179830 CATAGTCTCGCTAAACACGCTT 58.820 45.455 0.00 0.00 32.72 4.68
3864 5732 2.798680 CATAGTCTCGCTAAACACGCT 58.201 47.619 0.00 0.00 32.72 5.07
3865 5733 1.255600 GCATAGTCTCGCTAAACACGC 59.744 52.381 0.00 0.00 32.72 5.34
3866 5734 1.513178 CGCATAGTCTCGCTAAACACG 59.487 52.381 0.00 0.00 32.72 4.49
3867 5735 1.255600 GCGCATAGTCTCGCTAAACAC 59.744 52.381 0.30 0.00 46.92 3.32
3868 5736 1.556564 GCGCATAGTCTCGCTAAACA 58.443 50.000 0.30 0.00 46.92 2.83
3877 5745 3.071602 ACCAATATTGAGGCGCATAGTCT 59.928 43.478 17.23 0.00 37.62 3.24
3878 5746 3.187227 CACCAATATTGAGGCGCATAGTC 59.813 47.826 17.23 0.00 0.00 2.59
3879 5747 3.141398 CACCAATATTGAGGCGCATAGT 58.859 45.455 17.23 0.00 0.00 2.12
3880 5748 2.485426 CCACCAATATTGAGGCGCATAG 59.515 50.000 17.23 0.00 0.00 2.23
3881 5749 2.158682 ACCACCAATATTGAGGCGCATA 60.159 45.455 17.23 0.00 0.00 3.14
3882 5750 1.321474 CCACCAATATTGAGGCGCAT 58.679 50.000 17.23 0.00 0.00 4.73
3883 5751 0.034574 ACCACCAATATTGAGGCGCA 60.035 50.000 17.23 0.00 0.00 6.09
3884 5752 1.065551 GAACCACCAATATTGAGGCGC 59.934 52.381 17.23 0.00 0.00 6.53
3885 5753 2.643551 AGAACCACCAATATTGAGGCG 58.356 47.619 17.23 2.57 0.00 5.52
3886 5754 3.883489 GGTAGAACCACCAATATTGAGGC 59.117 47.826 17.23 6.70 38.42 4.70
3887 5755 5.373812 AGGTAGAACCACCAATATTGAGG 57.626 43.478 17.23 18.51 41.95 3.86
3888 5756 5.523916 CGAAGGTAGAACCACCAATATTGAG 59.476 44.000 17.23 9.36 41.95 3.02
3889 5757 5.188163 TCGAAGGTAGAACCACCAATATTGA 59.812 40.000 17.23 0.00 41.95 2.57
3890 5758 5.424757 TCGAAGGTAGAACCACCAATATTG 58.575 41.667 8.58 8.58 41.95 1.90
3891 5759 5.687166 TCGAAGGTAGAACCACCAATATT 57.313 39.130 0.00 0.00 41.95 1.28
3892 5760 5.424252 TCTTCGAAGGTAGAACCACCAATAT 59.576 40.000 24.37 0.00 41.95 1.28
3893 5761 4.773674 TCTTCGAAGGTAGAACCACCAATA 59.226 41.667 24.37 0.00 41.95 1.90
3894 5762 3.581332 TCTTCGAAGGTAGAACCACCAAT 59.419 43.478 24.37 0.00 41.95 3.16
3895 5763 2.967201 TCTTCGAAGGTAGAACCACCAA 59.033 45.455 24.37 0.00 41.95 3.67
3896 5764 2.600790 TCTTCGAAGGTAGAACCACCA 58.399 47.619 24.37 0.00 41.95 4.17
3897 5765 3.194968 TCATCTTCGAAGGTAGAACCACC 59.805 47.826 24.37 0.00 41.95 4.61
3898 5766 4.451629 TCATCTTCGAAGGTAGAACCAC 57.548 45.455 24.37 0.00 41.95 4.16
3899 5767 5.073311 CTTCATCTTCGAAGGTAGAACCA 57.927 43.478 24.37 3.32 41.95 3.67
3908 5776 5.060662 TCAGTGTACCTTCATCTTCGAAG 57.939 43.478 19.35 19.35 41.77 3.79
3909 5777 5.185056 TCATCAGTGTACCTTCATCTTCGAA 59.815 40.000 0.00 0.00 0.00 3.71
3910 5778 4.705023 TCATCAGTGTACCTTCATCTTCGA 59.295 41.667 0.00 0.00 0.00 3.71
3911 5779 4.998788 TCATCAGTGTACCTTCATCTTCG 58.001 43.478 0.00 0.00 0.00 3.79
3912 5780 6.876257 ACTTTCATCAGTGTACCTTCATCTTC 59.124 38.462 0.00 0.00 0.00 2.87
3913 5781 6.773638 ACTTTCATCAGTGTACCTTCATCTT 58.226 36.000 0.00 0.00 0.00 2.40
3914 5782 6.212388 AGACTTTCATCAGTGTACCTTCATCT 59.788 38.462 0.00 0.00 0.00 2.90
3915 5783 6.402222 AGACTTTCATCAGTGTACCTTCATC 58.598 40.000 0.00 0.00 0.00 2.92
3916 5784 6.212388 AGAGACTTTCATCAGTGTACCTTCAT 59.788 38.462 0.00 0.00 0.00 2.57
3917 5785 5.540337 AGAGACTTTCATCAGTGTACCTTCA 59.460 40.000 0.00 0.00 0.00 3.02
3918 5786 6.031751 AGAGACTTTCATCAGTGTACCTTC 57.968 41.667 0.00 0.00 0.00 3.46
3919 5787 6.042093 TCAAGAGACTTTCATCAGTGTACCTT 59.958 38.462 0.00 0.00 0.00 3.50
3920 5788 5.540337 TCAAGAGACTTTCATCAGTGTACCT 59.460 40.000 0.00 0.00 0.00 3.08
3921 5789 5.784177 TCAAGAGACTTTCATCAGTGTACC 58.216 41.667 0.00 0.00 0.00 3.34
3922 5790 6.870965 ACATCAAGAGACTTTCATCAGTGTAC 59.129 38.462 0.00 0.00 0.00 2.90
3923 5791 6.997655 ACATCAAGAGACTTTCATCAGTGTA 58.002 36.000 0.00 0.00 0.00 2.90
3924 5792 5.862845 ACATCAAGAGACTTTCATCAGTGT 58.137 37.500 0.00 0.00 0.00 3.55
3925 5793 6.164876 AGACATCAAGAGACTTTCATCAGTG 58.835 40.000 0.00 0.00 0.00 3.66
3926 5794 6.014755 TGAGACATCAAGAGACTTTCATCAGT 60.015 38.462 0.00 0.00 30.61 3.41
3927 5795 6.396450 TGAGACATCAAGAGACTTTCATCAG 58.604 40.000 0.00 0.00 30.61 2.90
3928 5796 6.350629 TGAGACATCAAGAGACTTTCATCA 57.649 37.500 0.00 0.00 30.61 3.07
3929 5797 6.648310 TGTTGAGACATCAAGAGACTTTCATC 59.352 38.462 0.00 0.00 45.96 2.92
3930 5798 6.528321 TGTTGAGACATCAAGAGACTTTCAT 58.472 36.000 0.00 0.00 45.96 2.57
3931 5799 5.917462 TGTTGAGACATCAAGAGACTTTCA 58.083 37.500 0.00 0.00 45.96 2.69
3932 5800 6.851222 TTGTTGAGACATCAAGAGACTTTC 57.149 37.500 0.00 0.00 45.96 2.62
3933 5801 7.222872 AGATTGTTGAGACATCAAGAGACTTT 58.777 34.615 0.00 0.00 45.96 2.66
3934 5802 6.767456 AGATTGTTGAGACATCAAGAGACTT 58.233 36.000 0.00 0.00 45.96 3.01
3935 5803 6.357579 AGATTGTTGAGACATCAAGAGACT 57.642 37.500 0.00 0.00 45.96 3.24
3936 5804 5.580297 GGAGATTGTTGAGACATCAAGAGAC 59.420 44.000 0.00 0.00 45.96 3.36
3937 5805 5.483231 AGGAGATTGTTGAGACATCAAGAGA 59.517 40.000 0.00 0.00 45.96 3.10
3938 5806 5.732633 AGGAGATTGTTGAGACATCAAGAG 58.267 41.667 0.00 0.00 45.96 2.85
3939 5807 5.752036 AGGAGATTGTTGAGACATCAAGA 57.248 39.130 0.00 0.00 45.96 3.02
3940 5808 5.936372 TCAAGGAGATTGTTGAGACATCAAG 59.064 40.000 0.00 0.00 45.96 3.02
3941 5809 5.702670 GTCAAGGAGATTGTTGAGACATCAA 59.297 40.000 0.00 0.00 39.17 2.57
3942 5810 5.012458 AGTCAAGGAGATTGTTGAGACATCA 59.988 40.000 0.00 0.00 40.05 3.07
3943 5811 5.350914 CAGTCAAGGAGATTGTTGAGACATC 59.649 44.000 0.00 0.00 40.05 3.06
3944 5812 5.243981 CAGTCAAGGAGATTGTTGAGACAT 58.756 41.667 0.00 0.00 40.05 3.06
3945 5813 4.635223 CAGTCAAGGAGATTGTTGAGACA 58.365 43.478 0.00 0.00 40.05 3.41
3946 5814 3.434984 GCAGTCAAGGAGATTGTTGAGAC 59.565 47.826 0.00 0.00 40.05 3.36
3947 5815 3.668447 GCAGTCAAGGAGATTGTTGAGA 58.332 45.455 0.00 0.00 40.05 3.27
3948 5816 2.414481 CGCAGTCAAGGAGATTGTTGAG 59.586 50.000 0.00 0.00 40.05 3.02
3949 5817 2.416747 CGCAGTCAAGGAGATTGTTGA 58.583 47.619 0.00 0.00 40.05 3.18
3950 5818 1.135859 GCGCAGTCAAGGAGATTGTTG 60.136 52.381 0.30 0.00 40.05 3.33
3951 5819 1.160137 GCGCAGTCAAGGAGATTGTT 58.840 50.000 0.30 0.00 40.05 2.83
3952 5820 0.322975 AGCGCAGTCAAGGAGATTGT 59.677 50.000 11.47 0.00 40.05 2.71
3953 5821 1.129998 CAAGCGCAGTCAAGGAGATTG 59.870 52.381 11.47 0.00 40.52 2.67
3954 5822 1.446907 CAAGCGCAGTCAAGGAGATT 58.553 50.000 11.47 0.00 0.00 2.40
3955 5823 1.023513 GCAAGCGCAGTCAAGGAGAT 61.024 55.000 11.47 0.00 38.36 2.75
3956 5824 1.669115 GCAAGCGCAGTCAAGGAGA 60.669 57.895 11.47 0.00 38.36 3.71
3957 5825 1.962822 TGCAAGCGCAGTCAAGGAG 60.963 57.895 11.47 0.00 45.36 3.69
3958 5826 2.110835 TGCAAGCGCAGTCAAGGA 59.889 55.556 11.47 0.00 45.36 3.36
3967 5835 2.511600 AGGGACGTATGCAAGCGC 60.512 61.111 0.00 0.00 39.24 5.92
3968 5836 1.883084 GGAGGGACGTATGCAAGCG 60.883 63.158 10.99 10.99 0.00 4.68
3969 5837 1.523938 GGGAGGGACGTATGCAAGC 60.524 63.158 0.00 0.00 0.00 4.01
3970 5838 1.227263 CGGGAGGGACGTATGCAAG 60.227 63.158 0.00 0.00 0.00 4.01
3971 5839 0.683828 TACGGGAGGGACGTATGCAA 60.684 55.000 0.00 0.00 44.93 4.08
3972 5840 1.076850 TACGGGAGGGACGTATGCA 60.077 57.895 0.00 0.00 44.93 3.96
3973 5841 1.361632 GTACGGGAGGGACGTATGC 59.638 63.158 0.90 0.00 46.77 3.14
3974 5842 0.752743 TGGTACGGGAGGGACGTATG 60.753 60.000 0.90 0.00 46.77 2.39
3975 5843 0.186873 ATGGTACGGGAGGGACGTAT 59.813 55.000 0.90 0.00 46.77 3.06
3976 5844 0.752743 CATGGTACGGGAGGGACGTA 60.753 60.000 0.00 0.00 44.93 3.57
3978 5846 1.113517 ATCATGGTACGGGAGGGACG 61.114 60.000 0.00 0.00 37.36 4.79
3979 5847 1.129058 AATCATGGTACGGGAGGGAC 58.871 55.000 0.00 0.00 0.00 4.46
3980 5848 1.128200 CAATCATGGTACGGGAGGGA 58.872 55.000 0.00 0.00 0.00 4.20
3981 5849 1.128200 TCAATCATGGTACGGGAGGG 58.872 55.000 0.00 0.00 0.00 4.30
3982 5850 4.222810 TGATATCAATCATGGTACGGGAGG 59.777 45.833 1.98 0.00 37.20 4.30
3983 5851 5.405935 TGATATCAATCATGGTACGGGAG 57.594 43.478 1.98 0.00 37.20 4.30
3994 5862 9.559732 CCAAGGTGTAGTTAATGATATCAATCA 57.440 33.333 9.99 0.00 46.01 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.