Multiple sequence alignment - TraesCS3D01G453400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G453400 chr3D 100.000 4356 0 0 1 4356 560550574 560554929 0.000000e+00 8045.0
1 TraesCS3D01G453400 chr3D 88.634 1654 99 29 826 2461 560639974 560641556 0.000000e+00 1930.0
2 TraesCS3D01G453400 chr3D 86.848 1285 136 13 1033 2316 560826910 560828162 0.000000e+00 1406.0
3 TraesCS3D01G453400 chr3D 83.892 1254 161 29 843 2068 560786050 560784810 0.000000e+00 1158.0
4 TraesCS3D01G453400 chr3D 92.500 680 42 4 2454 3128 560641472 560642147 0.000000e+00 965.0
5 TraesCS3D01G453400 chr3D 83.566 572 84 7 2488 3058 560753980 560754542 1.070000e-145 527.0
6 TraesCS3D01G453400 chr3D 79.672 792 89 29 3218 3976 560642272 560643024 5.030000e-139 505.0
7 TraesCS3D01G453400 chr3D 82.752 516 75 11 2556 3062 560285189 560284679 8.590000e-122 448.0
8 TraesCS3D01G453400 chr3D 78.151 595 82 28 1 572 560639332 560639901 6.980000e-88 335.0
9 TraesCS3D01G453400 chr3D 89.604 202 21 0 2115 2316 560285687 560285486 1.550000e-64 257.0
10 TraesCS3D01G453400 chr3D 95.652 92 3 1 2444 2534 560552943 560553034 3.510000e-31 147.0
11 TraesCS3D01G453400 chr3D 95.652 92 3 1 2370 2461 560553017 560553107 3.510000e-31 147.0
12 TraesCS3D01G453400 chr3D 86.239 109 9 5 840 947 560857224 560857327 3.560000e-21 113.0
13 TraesCS3D01G453400 chr3D 91.026 78 2 2 4268 4345 560701138 560701210 2.770000e-17 100.0
14 TraesCS3D01G453400 chr3D 90.411 73 4 1 3657 3729 560480272 560480341 4.640000e-15 93.5
15 TraesCS3D01G453400 chr3B 93.906 1838 79 10 642 2461 744728220 744730042 0.000000e+00 2743.0
16 TraesCS3D01G453400 chr3B 92.304 1858 88 27 642 2461 744846793 744848633 0.000000e+00 2588.0
17 TraesCS3D01G453400 chr3B 93.802 1081 54 6 642 1713 746284964 746286040 0.000000e+00 1613.0
18 TraesCS3D01G453400 chr3B 84.753 1338 174 18 985 2319 745203413 745202103 0.000000e+00 1314.0
19 TraesCS3D01G453400 chr3B 84.377 1357 179 23 980 2316 744419881 744418538 0.000000e+00 1301.0
20 TraesCS3D01G453400 chr3B 84.794 1335 158 29 985 2316 744546731 744545439 0.000000e+00 1299.0
21 TraesCS3D01G453400 chr3B 96.741 767 24 1 2363 3128 744848461 744849227 0.000000e+00 1277.0
22 TraesCS3D01G453400 chr3B 84.326 1327 138 37 2444 3725 744729951 744731252 0.000000e+00 1234.0
23 TraesCS3D01G453400 chr3B 83.836 1293 178 19 1034 2316 745474829 745473558 0.000000e+00 1201.0
24 TraesCS3D01G453400 chr3B 84.111 1221 158 25 843 2042 745450630 745449425 0.000000e+00 1147.0
25 TraesCS3D01G453400 chr3B 96.373 579 20 1 2444 3021 746286425 746287003 0.000000e+00 952.0
26 TraesCS3D01G453400 chr3B 83.333 876 78 30 3505 4348 746287407 746288246 0.000000e+00 747.0
27 TraesCS3D01G453400 chr3B 94.387 481 22 1 1986 2461 746286036 746286516 0.000000e+00 734.0
28 TraesCS3D01G453400 chr3B 89.242 567 51 4 1 567 744732987 744733543 0.000000e+00 701.0
29 TraesCS3D01G453400 chr3B 84.593 701 59 24 3493 4156 744849366 744850054 0.000000e+00 651.0
30 TraesCS3D01G453400 chr3B 84.615 507 73 3 2553 3058 745441617 745442119 2.340000e-137 499.0
31 TraesCS3D01G453400 chr3B 86.637 449 57 3 2556 3003 745473286 745472840 1.090000e-135 494.0
32 TraesCS3D01G453400 chr3B 83.661 508 71 9 2492 2997 746792844 746792347 6.600000e-128 468.0
33 TraesCS3D01G453400 chr3B 87.812 361 33 7 3804 4156 745192911 745193268 3.130000e-111 412.0
34 TraesCS3D01G453400 chr3B 82.995 394 47 12 2489 2880 744597880 744597505 5.400000e-89 339.0
35 TraesCS3D01G453400 chr3B 84.488 361 35 14 443 796 744727807 744728153 1.940000e-88 337.0
36 TraesCS3D01G453400 chr3B 93.458 214 10 2 3599 3811 745720335 745720545 9.090000e-82 315.0
37 TraesCS3D01G453400 chr3B 86.047 215 23 3 3949 4156 745241600 745241814 1.580000e-54 224.0
38 TraesCS3D01G453400 chr3B 80.251 319 25 16 3693 3977 746353599 746353913 5.710000e-49 206.0
39 TraesCS3D01G453400 chr3B 93.985 133 5 3 4216 4348 744850471 744850600 9.560000e-47 198.0
40 TraesCS3D01G453400 chr3B 77.987 318 36 12 827 1134 745547292 745547585 7.490000e-38 169.0
41 TraesCS3D01G453400 chr3B 93.069 101 6 1 563 662 744846769 744846869 3.510000e-31 147.0
42 TraesCS3D01G453400 chr3B 87.302 126 12 4 2196 2319 744598119 744597996 1.630000e-29 141.0
43 TraesCS3D01G453400 chr3B 94.565 92 4 1 2444 2534 744848469 744848560 1.630000e-29 141.0
44 TraesCS3D01G453400 chr3B 97.436 78 2 0 3051 3128 746286999 746287076 2.730000e-27 134.0
45 TraesCS3D01G453400 chr3B 93.902 82 5 0 4076 4157 746353918 746353999 1.640000e-24 124.0
46 TraesCS3D01G453400 chr3B 94.872 78 3 1 4268 4345 745241874 745241950 2.130000e-23 121.0
47 TraesCS3D01G453400 chr3B 94.872 78 3 1 4268 4345 745286279 745286355 2.130000e-23 121.0
48 TraesCS3D01G453400 chr3B 100.000 28 0 0 871 898 744728189 744728216 8.000000e-03 52.8
49 TraesCS3D01G453400 chr3A 85.575 1331 152 24 989 2316 629056480 629057773 0.000000e+00 1358.0
50 TraesCS3D01G453400 chr3A 85.537 1286 143 21 1033 2316 696637252 696638496 0.000000e+00 1304.0
51 TraesCS3D01G453400 chr3A 82.212 1248 155 37 1093 2331 696477932 696476743 0.000000e+00 1013.0
52 TraesCS3D01G453400 chr3A 91.597 119 10 0 826 944 696700163 696700281 9.690000e-37 165.0
53 TraesCS3D01G453400 chr3A 95.238 42 2 0 396 437 107022475 107022516 2.810000e-07 67.6
54 TraesCS3D01G453400 chrUn 94.872 78 3 1 4268 4345 201951893 201951817 2.130000e-23 121.0
55 TraesCS3D01G453400 chrUn 94.872 78 3 1 4268 4345 301720174 301720098 2.130000e-23 121.0
56 TraesCS3D01G453400 chr2D 95.000 40 2 0 3468 3507 355686153 355686192 3.640000e-06 63.9
57 TraesCS3D01G453400 chr2B 95.000 40 2 0 3468 3507 115903462 115903423 3.640000e-06 63.9
58 TraesCS3D01G453400 chr7D 97.222 36 1 0 3472 3507 574037678 574037713 1.310000e-05 62.1
59 TraesCS3D01G453400 chr7D 77.778 99 16 5 331 424 473110604 473110701 6.090000e-04 56.5
60 TraesCS3D01G453400 chr4A 100.000 33 0 0 396 428 589742461 589742429 1.310000e-05 62.1
61 TraesCS3D01G453400 chr5D 94.872 39 1 1 396 433 315624303 315624265 4.700000e-05 60.2
62 TraesCS3D01G453400 chr6B 97.143 35 0 1 396 430 126788276 126788309 1.690000e-04 58.4
63 TraesCS3D01G453400 chr6A 90.698 43 4 0 3468 3510 615794072 615794030 1.690000e-04 58.4
64 TraesCS3D01G453400 chr1D 94.737 38 1 1 396 433 406679315 406679279 1.690000e-04 58.4
65 TraesCS3D01G453400 chr1D 96.970 33 0 1 3476 3507 314711773 314711741 2.000000e-03 54.7
66 TraesCS3D01G453400 chr7B 85.714 56 4 4 373 424 607932777 607932722 6.090000e-04 56.5
67 TraesCS3D01G453400 chr1B 96.970 33 0 1 3476 3507 426455054 426455022 2.000000e-03 54.7
68 TraesCS3D01G453400 chr1A 96.970 33 0 1 3476 3507 395183515 395183483 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G453400 chr3D 560550574 560554929 4355 False 2779.666667 8045 97.101333 1 4356 3 chr3D.!!$F6 4355
1 TraesCS3D01G453400 chr3D 560826910 560828162 1252 False 1406.000000 1406 86.848000 1033 2316 1 chr3D.!!$F4 1283
2 TraesCS3D01G453400 chr3D 560784810 560786050 1240 True 1158.000000 1158 83.892000 843 2068 1 chr3D.!!$R1 1225
3 TraesCS3D01G453400 chr3D 560639332 560643024 3692 False 933.750000 1930 84.739250 1 3976 4 chr3D.!!$F7 3975
4 TraesCS3D01G453400 chr3D 560753980 560754542 562 False 527.000000 527 83.566000 2488 3058 1 chr3D.!!$F3 570
5 TraesCS3D01G453400 chr3D 560284679 560285687 1008 True 352.500000 448 86.178000 2115 3062 2 chr3D.!!$R2 947
6 TraesCS3D01G453400 chr3B 745202103 745203413 1310 True 1314.000000 1314 84.753000 985 2319 1 chr3B.!!$R3 1334
7 TraesCS3D01G453400 chr3B 744418538 744419881 1343 True 1301.000000 1301 84.377000 980 2316 1 chr3B.!!$R1 1336
8 TraesCS3D01G453400 chr3B 744545439 744546731 1292 True 1299.000000 1299 84.794000 985 2316 1 chr3B.!!$R2 1331
9 TraesCS3D01G453400 chr3B 745449425 745450630 1205 True 1147.000000 1147 84.111000 843 2042 1 chr3B.!!$R4 1199
10 TraesCS3D01G453400 chr3B 744727807 744733543 5736 False 1013.560000 2743 90.392400 1 3725 5 chr3B.!!$F6 3724
11 TraesCS3D01G453400 chr3B 745472840 745474829 1989 True 847.500000 1201 85.236500 1034 3003 2 chr3B.!!$R7 1969
12 TraesCS3D01G453400 chr3B 746284964 746288246 3282 False 836.000000 1613 93.066200 642 4348 5 chr3B.!!$F9 3706
13 TraesCS3D01G453400 chr3B 744846769 744850600 3831 False 833.666667 2588 92.542833 563 4348 6 chr3B.!!$F7 3785
14 TraesCS3D01G453400 chr3B 745441617 745442119 502 False 499.000000 499 84.615000 2553 3058 1 chr3B.!!$F3 505
15 TraesCS3D01G453400 chr3B 744597505 744598119 614 True 240.000000 339 85.148500 2196 2880 2 chr3B.!!$R6 684
16 TraesCS3D01G453400 chr3A 629056480 629057773 1293 False 1358.000000 1358 85.575000 989 2316 1 chr3A.!!$F2 1327
17 TraesCS3D01G453400 chr3A 696637252 696638496 1244 False 1304.000000 1304 85.537000 1033 2316 1 chr3A.!!$F3 1283
18 TraesCS3D01G453400 chr3A 696476743 696477932 1189 True 1013.000000 1013 82.212000 1093 2331 1 chr3A.!!$R1 1238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.035152 TGATTGTAGCAGTGGGGCAG 60.035 55.000 0.00 0.0 35.83 4.85 F
73 74 0.099968 GCGACACGTATGGTAGCAGA 59.900 55.000 0.00 0.0 36.94 4.26 F
88 89 0.108945 GCAGAGGAAAATGCAGCACC 60.109 55.000 0.00 0.0 42.11 5.01 F
150 151 0.109342 ATCCGGCCAATGATCTGACC 59.891 55.000 2.24 0.0 0.00 4.02 F
172 173 0.180878 TGATTGATCCGCCATGCTCA 59.819 50.000 0.00 0.0 0.00 4.26 F
906 1198 0.235926 GCCCAATATTTCTCGCTCGC 59.764 55.000 0.00 0.0 0.00 5.03 F
2005 2364 1.080366 CGTGCACCTAACCTGCGTA 60.080 57.895 12.15 0.0 37.46 4.42 F
2340 2908 0.035739 TGCTGCATTGTCAGAGCTGA 59.964 50.000 0.00 0.0 36.19 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 2364 1.496001 TGGCAGAATGTATCCCAGCAT 59.504 47.619 0.00 0.0 39.31 3.79 R
2056 2415 8.833231 ATTAAATTAGGATGTACCACGATGAG 57.167 34.615 0.00 0.0 42.04 2.90 R
2142 2547 4.339247 CCTGTAAATAATGCACCCAAGGAG 59.661 45.833 0.00 0.0 0.00 3.69 R
2239 2652 4.279420 AGAAAACCAGGCACTTTCTTGATC 59.721 41.667 6.11 0.0 36.27 2.92 R
2240 2653 4.218312 AGAAAACCAGGCACTTTCTTGAT 58.782 39.130 6.11 0.0 36.27 2.57 R
2321 2889 0.035739 TCAGCTCTGACAATGCAGCA 59.964 50.000 0.00 0.0 35.86 4.41 R
3128 3905 0.698238 TCCAGCCACATAAGCCTTGT 59.302 50.000 0.00 0.0 0.00 3.16 R
3545 4429 1.065401 TGGCTCTTGTTTTGTGAAGCG 59.935 47.619 0.00 0.0 0.00 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.864797 GTAGAAAGTACGAGGCGGCG 60.865 60.000 0.51 0.51 37.29 6.46
27 28 1.026182 TAGAAAGTACGAGGCGGCGA 61.026 55.000 12.98 0.00 34.83 5.54
46 47 2.416566 CGAGAGCAGTGATTGTAGCAGT 60.417 50.000 0.00 0.00 0.00 4.40
49 50 1.089920 GCAGTGATTGTAGCAGTGGG 58.910 55.000 0.00 0.00 37.22 4.61
53 54 0.035152 TGATTGTAGCAGTGGGGCAG 60.035 55.000 0.00 0.00 35.83 4.85
73 74 0.099968 GCGACACGTATGGTAGCAGA 59.900 55.000 0.00 0.00 36.94 4.26
75 76 1.268589 CGACACGTATGGTAGCAGAGG 60.269 57.143 7.63 7.63 0.00 3.69
78 79 2.829720 ACACGTATGGTAGCAGAGGAAA 59.170 45.455 15.36 0.00 0.00 3.13
80 81 4.081087 ACACGTATGGTAGCAGAGGAAAAT 60.081 41.667 15.36 0.00 0.00 1.82
83 84 2.877097 TGGTAGCAGAGGAAAATGCA 57.123 45.000 0.00 0.00 45.01 3.96
87 88 0.886563 AGCAGAGGAAAATGCAGCAC 59.113 50.000 0.00 0.00 45.01 4.40
88 89 0.108945 GCAGAGGAAAATGCAGCACC 60.109 55.000 0.00 0.00 42.11 5.01
96 97 1.033746 AAATGCAGCACCGATGGAGG 61.034 55.000 0.00 0.00 37.30 4.30
98 99 4.783621 GCAGCACCGATGGAGGCA 62.784 66.667 6.93 0.00 33.69 4.75
106 107 2.429767 CGATGGAGGCAGAGCAGGA 61.430 63.158 0.00 0.00 0.00 3.86
109 110 0.400237 ATGGAGGCAGAGCAGGAGAT 60.400 55.000 0.00 0.00 0.00 2.75
114 115 0.968405 GGCAGAGCAGGAGATAGAGG 59.032 60.000 0.00 0.00 0.00 3.69
124 125 1.617263 GGAGATAGAGGAGGCGGCATA 60.617 57.143 13.08 0.00 0.00 3.14
146 147 4.488790 GCATCCGGCCAATGATCT 57.511 55.556 17.21 0.00 36.11 2.75
148 149 0.535780 GCATCCGGCCAATGATCTGA 60.536 55.000 17.21 0.00 36.11 3.27
150 151 0.109342 ATCCGGCCAATGATCTGACC 59.891 55.000 2.24 0.00 0.00 4.02
152 153 1.143838 CGGCCAATGATCTGACCGA 59.856 57.895 2.24 0.00 43.19 4.69
153 154 0.250038 CGGCCAATGATCTGACCGAT 60.250 55.000 2.24 0.00 43.19 4.18
172 173 0.180878 TGATTGATCCGCCATGCTCA 59.819 50.000 0.00 0.00 0.00 4.26
173 174 1.202842 TGATTGATCCGCCATGCTCAT 60.203 47.619 0.00 0.00 0.00 2.90
179 180 0.829990 TCCGCCATGCTCATACTTGA 59.170 50.000 0.00 0.00 0.00 3.02
190 191 9.158233 CCATGCTCATACTTGAATTTCATTTTT 57.842 29.630 0.00 0.00 0.00 1.94
249 259 8.199449 ACTTCATTGAACTGTTGAATTGTGATT 58.801 29.630 2.37 0.00 0.00 2.57
279 289 3.498018 TGTTATATGATCCACGTGCATGC 59.502 43.478 11.82 11.82 0.00 4.06
280 290 2.556144 ATATGATCCACGTGCATGCT 57.444 45.000 20.33 0.00 0.00 3.79
281 291 2.330440 TATGATCCACGTGCATGCTT 57.670 45.000 20.33 0.00 0.00 3.91
282 292 1.466856 ATGATCCACGTGCATGCTTT 58.533 45.000 20.33 0.00 0.00 3.51
283 293 1.246649 TGATCCACGTGCATGCTTTT 58.753 45.000 20.33 0.00 0.00 2.27
284 294 1.199789 TGATCCACGTGCATGCTTTTC 59.800 47.619 20.33 6.01 0.00 2.29
285 295 1.199789 GATCCACGTGCATGCTTTTCA 59.800 47.619 20.33 0.00 0.00 2.69
286 296 1.246649 TCCACGTGCATGCTTTTCAT 58.753 45.000 20.33 0.00 35.31 2.57
305 315 4.484236 TCATGGATTTGAACGTTTGCATC 58.516 39.130 0.46 4.21 0.00 3.91
306 316 4.218200 TCATGGATTTGAACGTTTGCATCT 59.782 37.500 0.46 0.00 0.00 2.90
317 327 4.414852 ACGTTTGCATCTGATAATTGTGC 58.585 39.130 0.00 0.00 36.39 4.57
324 334 0.664761 CTGATAATTGTGCCTGCCCG 59.335 55.000 0.00 0.00 0.00 6.13
325 335 0.751277 TGATAATTGTGCCTGCCCGG 60.751 55.000 0.00 0.00 0.00 5.73
345 355 1.523758 CAGTAAATATGAGGGGCCGC 58.476 55.000 12.88 12.88 0.00 6.53
359 369 4.431131 CCGCCCAGGCTTGTCCAT 62.431 66.667 7.17 0.00 39.32 3.41
361 371 2.757099 GCCCAGGCTTGTCCATGG 60.757 66.667 4.97 4.97 38.26 3.66
362 372 2.043652 CCCAGGCTTGTCCATGGG 60.044 66.667 13.02 0.00 42.73 4.00
363 373 2.765969 CCAGGCTTGTCCATGGGT 59.234 61.111 13.02 0.00 37.29 4.51
364 374 1.679977 CCAGGCTTGTCCATGGGTG 60.680 63.158 13.02 0.88 37.29 4.61
365 375 1.075482 CAGGCTTGTCCATGGGTGT 59.925 57.895 13.02 0.00 37.29 4.16
366 376 1.075482 AGGCTTGTCCATGGGTGTG 59.925 57.895 13.02 1.63 37.29 3.82
367 377 1.228552 GGCTTGTCCATGGGTGTGT 60.229 57.895 13.02 0.00 34.01 3.72
368 378 1.244019 GGCTTGTCCATGGGTGTGTC 61.244 60.000 13.02 0.00 34.01 3.67
369 379 0.537143 GCTTGTCCATGGGTGTGTCA 60.537 55.000 13.02 0.00 0.00 3.58
372 382 1.002134 GTCCATGGGTGTGTCAGGG 60.002 63.158 13.02 0.00 37.41 4.45
373 383 2.361610 CCATGGGTGTGTCAGGGC 60.362 66.667 2.85 0.00 0.00 5.19
374 384 2.747460 CATGGGTGTGTCAGGGCG 60.747 66.667 0.00 0.00 0.00 6.13
375 385 3.249189 ATGGGTGTGTCAGGGCGT 61.249 61.111 0.00 0.00 0.00 5.68
376 386 3.551496 ATGGGTGTGTCAGGGCGTG 62.551 63.158 0.00 0.00 0.00 5.34
377 387 4.250305 GGGTGTGTCAGGGCGTGT 62.250 66.667 7.12 0.00 0.00 4.49
378 388 2.665185 GGTGTGTCAGGGCGTGTC 60.665 66.667 7.12 2.11 0.00 3.67
380 390 3.157949 TGTGTCAGGGCGTGTCCA 61.158 61.111 7.12 2.92 36.21 4.02
381 391 2.665185 GTGTCAGGGCGTGTCCAC 60.665 66.667 7.12 11.14 36.21 4.02
402 412 2.035066 CGGAAATCCATGGAGATTTGCC 59.965 50.000 21.33 16.21 46.17 4.52
425 435 3.362706 AGTCCGGTTGTAGATGCTCTTA 58.637 45.455 0.00 0.00 0.00 2.10
426 436 3.961408 AGTCCGGTTGTAGATGCTCTTAT 59.039 43.478 0.00 0.00 0.00 1.73
427 437 4.051922 GTCCGGTTGTAGATGCTCTTATG 58.948 47.826 0.00 0.00 0.00 1.90
428 438 2.802816 CCGGTTGTAGATGCTCTTATGC 59.197 50.000 0.00 0.00 0.00 3.14
441 451 5.811190 TGCTCTTATGCCTTGGTTTACTAA 58.189 37.500 0.00 0.00 0.00 2.24
621 637 5.606348 ATTTTTGTAGGGCAACTTCACAA 57.394 34.783 0.00 0.00 36.72 3.33
622 638 5.606348 TTTTTGTAGGGCAACTTCACAAT 57.394 34.783 0.00 0.00 36.72 2.71
623 639 5.606348 TTTTGTAGGGCAACTTCACAATT 57.394 34.783 0.00 0.00 36.72 2.32
624 640 5.606348 TTTGTAGGGCAACTTCACAATTT 57.394 34.783 0.00 0.00 36.72 1.82
628 644 8.410673 TTGTAGGGCAACTTCACAATTTAATA 57.589 30.769 0.00 0.00 31.07 0.98
753 988 7.505258 AGTGCACAATTTAATTTTGTAGGGTT 58.495 30.769 21.04 0.00 35.61 4.11
755 990 8.705134 GTGCACAATTTAATTTTGTAGGGTTAC 58.295 33.333 13.17 0.00 35.61 2.50
905 1197 0.868406 GGCCCAATATTTCTCGCTCG 59.132 55.000 0.00 0.00 0.00 5.03
906 1198 0.235926 GCCCAATATTTCTCGCTCGC 59.764 55.000 0.00 0.00 0.00 5.03
907 1199 1.871080 CCCAATATTTCTCGCTCGCT 58.129 50.000 0.00 0.00 0.00 4.93
908 1200 2.866460 GCCCAATATTTCTCGCTCGCTA 60.866 50.000 0.00 0.00 0.00 4.26
909 1201 2.989840 CCCAATATTTCTCGCTCGCTAG 59.010 50.000 0.00 0.00 0.00 3.42
1101 1436 1.206745 CGCTCGACGTCGGCATAAAT 61.207 55.000 34.14 0.00 40.29 1.40
1503 1850 4.414956 ATGGAGGAGCACCGGGGA 62.415 66.667 8.67 0.00 41.83 4.81
2005 2364 1.080366 CGTGCACCTAACCTGCGTA 60.080 57.895 12.15 0.00 37.46 4.42
2056 2415 1.182667 GTTGGGGATTAGCAACACCC 58.817 55.000 0.00 0.00 41.84 4.61
2317 2885 7.748691 TGTCCAGGTAAAATTGGTTAACTAC 57.251 36.000 5.42 0.00 35.89 2.73
2318 2886 7.288560 TGTCCAGGTAAAATTGGTTAACTACA 58.711 34.615 5.42 0.00 35.89 2.74
2319 2887 7.229106 TGTCCAGGTAAAATTGGTTAACTACAC 59.771 37.037 5.42 0.00 35.89 2.90
2320 2888 7.446319 GTCCAGGTAAAATTGGTTAACTACACT 59.554 37.037 5.42 0.00 35.89 3.55
2321 2889 8.000127 TCCAGGTAAAATTGGTTAACTACACTT 59.000 33.333 5.42 0.00 35.89 3.16
2322 2890 8.079809 CCAGGTAAAATTGGTTAACTACACTTG 58.920 37.037 5.42 1.98 29.69 3.16
2323 2891 7.593644 CAGGTAAAATTGGTTAACTACACTTGC 59.406 37.037 5.42 0.00 29.69 4.01
2324 2892 7.504574 AGGTAAAATTGGTTAACTACACTTGCT 59.495 33.333 5.42 0.00 28.97 3.91
2329 2897 4.141287 TGGTTAACTACACTTGCTGCATT 58.859 39.130 1.84 0.00 0.00 3.56
2338 2906 1.166129 CTTGCTGCATTGTCAGAGCT 58.834 50.000 1.84 0.00 36.19 4.09
2339 2907 0.879090 TTGCTGCATTGTCAGAGCTG 59.121 50.000 1.84 0.00 36.19 4.24
2340 2908 0.035739 TGCTGCATTGTCAGAGCTGA 59.964 50.000 0.00 0.00 36.19 4.26
2341 2909 1.339727 TGCTGCATTGTCAGAGCTGAT 60.340 47.619 0.00 0.00 42.18 2.90
2342 2910 1.743958 GCTGCATTGTCAGAGCTGATT 59.256 47.619 3.19 0.00 42.18 2.57
2343 2911 2.941064 GCTGCATTGTCAGAGCTGATTA 59.059 45.455 3.19 0.00 42.18 1.75
2344 2912 3.564644 GCTGCATTGTCAGAGCTGATTAT 59.435 43.478 3.19 0.00 42.18 1.28
2345 2913 4.036498 GCTGCATTGTCAGAGCTGATTATT 59.964 41.667 3.19 0.00 42.18 1.40
2346 2914 5.450137 GCTGCATTGTCAGAGCTGATTATTT 60.450 40.000 3.19 0.00 42.18 1.40
2347 2915 6.238566 GCTGCATTGTCAGAGCTGATTATTTA 60.239 38.462 3.19 0.00 42.18 1.40
2348 2916 7.521748 GCTGCATTGTCAGAGCTGATTATTTAT 60.522 37.037 3.19 0.00 42.18 1.40
2349 2917 7.868775 TGCATTGTCAGAGCTGATTATTTATC 58.131 34.615 3.19 0.00 42.18 1.75
2350 2918 7.040892 TGCATTGTCAGAGCTGATTATTTATCC 60.041 37.037 3.19 0.00 42.18 2.59
2351 2919 7.174599 GCATTGTCAGAGCTGATTATTTATCCT 59.825 37.037 3.19 0.00 42.18 3.24
2352 2920 8.719648 CATTGTCAGAGCTGATTATTTATCCTC 58.280 37.037 3.19 0.00 42.18 3.71
2353 2921 7.365497 TGTCAGAGCTGATTATTTATCCTCA 57.635 36.000 3.19 0.00 42.18 3.86
2354 2922 7.971201 TGTCAGAGCTGATTATTTATCCTCAT 58.029 34.615 3.19 0.00 42.18 2.90
2355 2923 9.093458 TGTCAGAGCTGATTATTTATCCTCATA 57.907 33.333 3.19 0.00 42.18 2.15
2356 2924 9.585099 GTCAGAGCTGATTATTTATCCTCATAG 57.415 37.037 3.19 0.00 42.18 2.23
2357 2925 9.539194 TCAGAGCTGATTATTTATCCTCATAGA 57.461 33.333 0.00 0.00 34.14 1.98
2414 2982 9.155975 AGTCAGATTAATTATACGATTGATGGC 57.844 33.333 0.00 0.00 0.00 4.40
2415 2983 8.391106 GTCAGATTAATTATACGATTGATGGCC 58.609 37.037 0.00 0.00 0.00 5.36
2416 2984 8.321353 TCAGATTAATTATACGATTGATGGCCT 58.679 33.333 3.32 0.00 0.00 5.19
2417 2985 8.393366 CAGATTAATTATACGATTGATGGCCTG 58.607 37.037 3.32 0.00 0.00 4.85
2418 2986 6.494893 TTAATTATACGATTGATGGCCTGC 57.505 37.500 3.32 0.00 0.00 4.85
2419 2987 3.769739 TTATACGATTGATGGCCTGCT 57.230 42.857 3.32 0.00 0.00 4.24
2420 2988 1.888215 ATACGATTGATGGCCTGCTG 58.112 50.000 3.32 0.00 0.00 4.41
2421 2989 0.815213 TACGATTGATGGCCTGCTGC 60.815 55.000 3.32 0.00 40.16 5.25
2422 2990 2.116533 CGATTGATGGCCTGCTGCA 61.117 57.895 3.32 0.88 43.89 4.41
2423 2991 1.734137 GATTGATGGCCTGCTGCAG 59.266 57.895 22.44 22.44 43.89 4.41
2424 2992 2.351336 GATTGATGGCCTGCTGCAGC 62.351 60.000 31.89 31.89 43.89 5.25
2436 3004 1.893544 GCTGCAGCATCATATGTCCT 58.106 50.000 33.36 0.00 41.59 3.85
2437 3005 1.805345 GCTGCAGCATCATATGTCCTC 59.195 52.381 33.36 0.00 41.59 3.71
2438 3006 2.809299 GCTGCAGCATCATATGTCCTCA 60.809 50.000 33.36 0.00 41.59 3.86
2439 3007 3.676093 CTGCAGCATCATATGTCCTCAT 58.324 45.455 0.00 0.00 38.00 2.90
2440 3008 4.828829 CTGCAGCATCATATGTCCTCATA 58.171 43.478 0.00 0.00 40.26 2.15
2441 3009 4.828829 TGCAGCATCATATGTCCTCATAG 58.171 43.478 1.90 0.00 39.49 2.23
2442 3010 4.529377 TGCAGCATCATATGTCCTCATAGA 59.471 41.667 1.90 0.00 39.49 1.98
2443 3011 5.189145 TGCAGCATCATATGTCCTCATAGAT 59.811 40.000 1.90 0.00 39.49 1.98
2444 3012 6.381994 TGCAGCATCATATGTCCTCATAGATA 59.618 38.462 1.90 0.00 39.49 1.98
2445 3013 7.093201 TGCAGCATCATATGTCCTCATAGATAA 60.093 37.037 1.90 0.00 39.49 1.75
2446 3014 7.438757 GCAGCATCATATGTCCTCATAGATAAG 59.561 40.741 1.90 0.00 39.49 1.73
2447 3015 8.693625 CAGCATCATATGTCCTCATAGATAAGA 58.306 37.037 1.90 0.00 39.49 2.10
2448 3016 9.436866 AGCATCATATGTCCTCATAGATAAGAT 57.563 33.333 1.90 0.00 39.49 2.40
2449 3017 9.695526 GCATCATATGTCCTCATAGATAAGATC 57.304 37.037 1.90 0.00 39.49 2.75
2452 3020 8.573097 TCATATGTCCTCATAGATAAGATCCCT 58.427 37.037 1.90 0.00 39.49 4.20
2534 3297 8.072321 TCATAGATAAGATCCCTGAACTATGC 57.928 38.462 0.00 0.00 37.16 3.14
2545 3308 4.581824 CCCTGAACTATGCATGTGCTAATT 59.418 41.667 10.16 0.00 42.66 1.40
2941 3704 3.173953 TCTGATTTGGGGTTTGCTGAT 57.826 42.857 0.00 0.00 0.00 2.90
2977 3742 7.660112 TCAAGTACTACTACAAATCCGAAACA 58.340 34.615 0.00 0.00 0.00 2.83
3048 3821 6.300703 CAAGACTACTGGTACCTAGCTAGAT 58.699 44.000 22.70 7.77 0.00 1.98
3066 3839 3.571590 AGATTTTGTGTTGTTGGGCCTA 58.428 40.909 4.53 0.00 0.00 3.93
3128 3905 4.156556 GCTTTCTGCATGATGAGGTTGTTA 59.843 41.667 0.00 0.00 42.31 2.41
3133 3926 3.758023 TGCATGATGAGGTTGTTACAAGG 59.242 43.478 0.00 0.00 0.00 3.61
3145 3938 3.081061 TGTTACAAGGCTTATGTGGCTG 58.919 45.455 0.00 0.00 42.20 4.85
3153 3946 0.666913 CTTATGTGGCTGGATGCTGC 59.333 55.000 7.59 7.59 42.39 5.25
3154 3947 0.034283 TTATGTGGCTGGATGCTGCA 60.034 50.000 17.41 4.13 42.39 4.41
3155 3948 0.749091 TATGTGGCTGGATGCTGCAC 60.749 55.000 17.41 13.18 42.39 4.57
3158 3951 2.515523 GGCTGGATGCTGCACGAT 60.516 61.111 17.41 0.00 42.39 3.73
3162 3962 1.153309 TGGATGCTGCACGATGAGG 60.153 57.895 3.57 0.00 0.00 3.86
3187 3987 9.893305 GGTCGAATTAGATAAAAATATTGTGGG 57.107 33.333 0.00 0.00 0.00 4.61
3189 3989 9.635404 TCGAATTAGATAAAAATATTGTGGGGT 57.365 29.630 0.00 0.00 0.00 4.95
3196 3996 9.636789 AGATAAAAATATTGTGGGGTAGTTACC 57.363 33.333 0.00 0.00 45.71 2.85
3227 4027 6.656632 TCAATCAACAGGGCTATCTAGTAG 57.343 41.667 0.00 0.00 0.00 2.57
3231 4059 4.645136 TCAACAGGGCTATCTAGTAGTGTG 59.355 45.833 0.00 0.00 32.72 3.82
3250 4078 4.396790 GTGTGTTTCTGGTTTGTCCAACTA 59.603 41.667 0.00 0.00 46.59 2.24
3262 4090 7.081976 GGTTTGTCCAACTACAATGTCATTAC 58.918 38.462 0.00 0.00 39.04 1.89
3266 4094 8.942338 TGTCCAACTACAATGTCATTACTATC 57.058 34.615 0.00 0.00 0.00 2.08
3274 4102 5.750547 ACAATGTCATTACTATCTCGTGCAG 59.249 40.000 0.00 0.00 0.00 4.41
3281 4109 3.660501 ACTATCTCGTGCAGTTGTTGA 57.339 42.857 0.00 0.00 0.00 3.18
3296 4124 7.037438 GCAGTTGTTGATACCATGAATCAATT 58.963 34.615 19.83 8.97 43.29 2.32
3306 4134 8.876275 ATACCATGAATCAATTTGTTATGCAC 57.124 30.769 0.00 0.00 0.00 4.57
3316 4144 8.662781 TCAATTTGTTATGCACTAGATAGGTC 57.337 34.615 0.00 0.00 0.00 3.85
3322 4150 6.039829 TGTTATGCACTAGATAGGTCTCACTG 59.960 42.308 0.00 0.00 35.87 3.66
3325 4153 3.002862 GCACTAGATAGGTCTCACTGTCG 59.997 52.174 0.00 0.00 35.87 4.35
3326 4154 4.443621 CACTAGATAGGTCTCACTGTCGA 58.556 47.826 0.00 0.00 35.87 4.20
3332 4160 1.883275 AGGTCTCACTGTCGACTTGAG 59.117 52.381 28.21 28.21 38.52 3.02
3372 4200 4.023193 ACCGCAATTCTGGTCTTTAGTTTG 60.023 41.667 0.00 0.00 31.16 2.93
3373 4201 4.023193 CCGCAATTCTGGTCTTTAGTTTGT 60.023 41.667 0.00 0.00 0.00 2.83
3374 4202 5.180492 CCGCAATTCTGGTCTTTAGTTTGTA 59.820 40.000 0.00 0.00 0.00 2.41
3378 4206 9.476202 GCAATTCTGGTCTTTAGTTTGTATTTT 57.524 29.630 0.00 0.00 0.00 1.82
3383 4211 8.836413 TCTGGTCTTTAGTTTGTATTTTCACAG 58.164 33.333 0.00 0.00 0.00 3.66
3384 4212 8.740123 TGGTCTTTAGTTTGTATTTTCACAGA 57.260 30.769 0.00 0.00 0.00 3.41
3385 4213 8.617809 TGGTCTTTAGTTTGTATTTTCACAGAC 58.382 33.333 0.00 0.00 34.58 3.51
3393 4221 9.841295 AGTTTGTATTTTCACAGACTTTACCTA 57.159 29.630 0.00 0.00 40.00 3.08
3400 4228 8.658499 TTTTCACAGACTTTACCTAAAGAGAC 57.342 34.615 11.06 3.66 44.07 3.36
3402 4230 5.048224 TCACAGACTTTACCTAAAGAGACGG 60.048 44.000 11.06 6.13 44.07 4.79
3404 4232 5.183522 ACAGACTTTACCTAAAGAGACGGAG 59.816 44.000 11.06 0.00 44.07 4.63
3405 4233 5.183522 CAGACTTTACCTAAAGAGACGGAGT 59.816 44.000 11.06 0.00 44.76 3.85
3407 4235 6.374053 AGACTTTACCTAAAGAGACGGAGTAC 59.626 42.308 11.06 0.00 43.08 2.73
3408 4236 6.006449 ACTTTACCTAAAGAGACGGAGTACA 58.994 40.000 11.06 0.00 43.08 2.90
3409 4237 6.662663 ACTTTACCTAAAGAGACGGAGTACAT 59.337 38.462 11.06 0.00 43.08 2.29
3410 4238 6.973474 CTTTACCTAAAGAGACGGAGTACATG 59.027 42.308 0.00 0.00 43.08 3.21
3411 4239 7.362747 CTTTACCTAAAGAGACGGAGTACATGT 60.363 40.741 2.69 2.69 43.08 3.21
3440 4320 5.995897 TCTTTTGTTAAGTCTTACTGCCTCC 59.004 40.000 0.00 0.00 0.00 4.30
3443 4323 3.057033 TGTTAAGTCTTACTGCCTCCGTC 60.057 47.826 0.00 0.00 0.00 4.79
3444 4324 1.926108 AAGTCTTACTGCCTCCGTCT 58.074 50.000 0.00 0.00 0.00 4.18
3446 4326 1.004979 AGTCTTACTGCCTCCGTCTCT 59.995 52.381 0.00 0.00 0.00 3.10
3448 4328 2.231721 GTCTTACTGCCTCCGTCTCTTT 59.768 50.000 0.00 0.00 0.00 2.52
3450 4330 3.695060 TCTTACTGCCTCCGTCTCTTTAG 59.305 47.826 0.00 0.00 0.00 1.85
3451 4331 1.187087 ACTGCCTCCGTCTCTTTAGG 58.813 55.000 0.00 0.00 0.00 2.69
3453 4333 1.825474 CTGCCTCCGTCTCTTTAGGAA 59.175 52.381 0.00 0.00 33.10 3.36
3454 4334 1.549170 TGCCTCCGTCTCTTTAGGAAC 59.451 52.381 0.00 0.00 33.10 3.62
3455 4335 1.549170 GCCTCCGTCTCTTTAGGAACA 59.451 52.381 0.00 0.00 33.10 3.18
3456 4336 2.417515 GCCTCCGTCTCTTTAGGAACAG 60.418 54.545 0.00 0.00 33.10 3.16
3457 4337 2.166664 CCTCCGTCTCTTTAGGAACAGG 59.833 54.545 0.00 0.00 33.10 4.00
3459 4339 3.503365 TCCGTCTCTTTAGGAACAGGAA 58.497 45.455 0.00 0.00 0.00 3.36
3460 4340 4.094476 TCCGTCTCTTTAGGAACAGGAAT 58.906 43.478 0.00 0.00 0.00 3.01
3461 4341 4.159879 TCCGTCTCTTTAGGAACAGGAATC 59.840 45.833 0.00 0.00 0.00 2.52
3465 4345 7.321153 CGTCTCTTTAGGAACAGGAATCTTTA 58.679 38.462 0.00 0.00 0.00 1.85
3466 4346 7.489757 CGTCTCTTTAGGAACAGGAATCTTTAG 59.510 40.741 0.00 0.00 0.00 1.85
3467 4347 8.315482 GTCTCTTTAGGAACAGGAATCTTTAGT 58.685 37.037 0.00 0.00 0.00 2.24
3469 4349 9.508642 CTCTTTAGGAACAGGAATCTTTAGTTT 57.491 33.333 0.00 0.00 0.00 2.66
3470 4350 9.503399 TCTTTAGGAACAGGAATCTTTAGTTTC 57.497 33.333 0.00 0.00 0.00 2.78
3471 4351 7.900782 TTAGGAACAGGAATCTTTAGTTTCG 57.099 36.000 0.00 0.00 0.00 3.46
3472 4352 4.695928 AGGAACAGGAATCTTTAGTTTCGC 59.304 41.667 0.00 0.00 0.00 4.70
3473 4353 4.142665 GGAACAGGAATCTTTAGTTTCGCC 60.143 45.833 0.00 0.00 0.00 5.54
3474 4354 4.287766 ACAGGAATCTTTAGTTTCGCCT 57.712 40.909 0.00 0.00 0.00 5.52
3475 4355 4.652822 ACAGGAATCTTTAGTTTCGCCTT 58.347 39.130 0.00 0.00 0.00 4.35
3476 4356 4.695928 ACAGGAATCTTTAGTTTCGCCTTC 59.304 41.667 0.00 0.00 0.00 3.46
3478 4358 4.007659 GGAATCTTTAGTTTCGCCTTCCA 58.992 43.478 0.00 0.00 32.90 3.53
3484 4364 2.485266 AGTTTCGCCTTCCAAAAACG 57.515 45.000 0.00 0.00 36.86 3.60
3485 4365 1.746787 AGTTTCGCCTTCCAAAAACGT 59.253 42.857 0.00 0.00 36.86 3.99
3487 4367 1.670791 TTCGCCTTCCAAAAACGTCT 58.329 45.000 0.00 0.00 0.00 4.18
3488 4368 1.670791 TCGCCTTCCAAAAACGTCTT 58.329 45.000 0.00 0.00 0.00 3.01
3489 4369 2.836262 TCGCCTTCCAAAAACGTCTTA 58.164 42.857 0.00 0.00 0.00 2.10
3490 4370 3.404899 TCGCCTTCCAAAAACGTCTTAT 58.595 40.909 0.00 0.00 0.00 1.73
3491 4371 4.567971 TCGCCTTCCAAAAACGTCTTATA 58.432 39.130 0.00 0.00 0.00 0.98
3492 4372 4.996122 TCGCCTTCCAAAAACGTCTTATAA 59.004 37.500 0.00 0.00 0.00 0.98
3494 4374 6.149807 TCGCCTTCCAAAAACGTCTTATAATT 59.850 34.615 0.00 0.00 0.00 1.40
3496 4376 7.201316 CGCCTTCCAAAAACGTCTTATAATTTG 60.201 37.037 0.00 1.61 0.00 2.32
3497 4377 7.062956 GCCTTCCAAAAACGTCTTATAATTTGG 59.937 37.037 15.42 15.42 45.06 3.28
3498 4378 7.544217 CCTTCCAAAAACGTCTTATAATTTGGG 59.456 37.037 19.00 9.63 44.27 4.12
3499 4379 7.762588 TCCAAAAACGTCTTATAATTTGGGA 57.237 32.000 19.00 11.31 44.27 4.37
3500 4380 7.595604 TCCAAAAACGTCTTATAATTTGGGAC 58.404 34.615 19.00 8.31 44.27 4.46
3502 4382 7.540745 CCAAAAACGTCTTATAATTTGGGACAG 59.459 37.037 14.35 5.62 41.80 3.51
3503 4383 7.989416 AAAACGTCTTATAATTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
3507 4391 6.099845 ACGTCTTATAATTTGGGACAGAGGAT 59.900 38.462 3.57 0.00 42.39 3.24
3519 4403 6.830912 TGGGACAGAGGATTATTACTGATTG 58.169 40.000 0.00 0.00 34.88 2.67
3545 4429 3.624861 CAGTTGCACAGAGATATGGGAAC 59.375 47.826 0.00 0.00 0.00 3.62
3546 4430 2.602257 TGCACAGAGATATGGGAACG 57.398 50.000 0.00 0.00 0.00 3.95
3551 4435 2.766263 ACAGAGATATGGGAACGCTTCA 59.234 45.455 0.00 0.00 0.00 3.02
3562 4446 3.363178 GGAACGCTTCACAAAACAAGAG 58.637 45.455 0.00 0.00 0.00 2.85
3563 4447 2.475200 ACGCTTCACAAAACAAGAGC 57.525 45.000 0.00 0.00 0.00 4.09
3583 4467 3.521126 AGCCATATCTTCACCTGTTGAGT 59.479 43.478 0.00 0.00 34.94 3.41
3597 4481 4.638421 CCTGTTGAGTACCAAAACAACTCA 59.362 41.667 0.00 0.46 45.87 3.41
3644 4530 1.045911 GGATGAGAGGGGCTTCGTCT 61.046 60.000 3.28 3.28 42.62 4.18
3650 4536 3.263261 GAGAGGGGCTTCGTCTTTTTAG 58.737 50.000 4.80 0.00 40.32 1.85
3725 4617 0.761187 ATGTCCTGAGCACACTGTGT 59.239 50.000 7.80 7.80 35.75 3.72
3752 4644 5.822519 GGAACACATGGATTACAGATTAGCA 59.177 40.000 0.00 0.00 0.00 3.49
3753 4645 6.238484 GGAACACATGGATTACAGATTAGCAC 60.238 42.308 0.00 0.00 0.00 4.40
3754 4646 5.994250 ACACATGGATTACAGATTAGCACT 58.006 37.500 0.00 0.00 0.00 4.40
3782 6355 1.884235 AGTAGCACAGACCAAACTGC 58.116 50.000 0.00 0.00 41.06 4.40
3829 6426 6.000891 TCAATCAAATGTACTTCACAGCAC 57.999 37.500 0.00 0.00 41.51 4.40
3844 6441 2.204237 CAGCACATCGATCCGATTCAA 58.796 47.619 0.00 0.00 44.59 2.69
3845 6442 2.804527 CAGCACATCGATCCGATTCAAT 59.195 45.455 0.00 0.00 44.59 2.57
3848 6445 3.662713 GCACATCGATCCGATTCAATTCG 60.663 47.826 0.00 0.00 44.59 3.34
3849 6446 3.735746 CACATCGATCCGATTCAATTCGA 59.264 43.478 0.00 0.00 44.59 3.71
3850 6447 4.386954 CACATCGATCCGATTCAATTCGAT 59.613 41.667 0.00 0.00 44.59 3.59
3853 6450 6.645003 ACATCGATCCGATTCAATTCGATTTA 59.355 34.615 0.00 0.00 44.59 1.40
3855 6452 7.652300 TCGATCCGATTCAATTCGATTTAAT 57.348 32.000 0.00 0.00 41.62 1.40
3856 6453 7.509797 TCGATCCGATTCAATTCGATTTAATG 58.490 34.615 0.00 0.00 41.62 1.90
3857 6454 7.383843 TCGATCCGATTCAATTCGATTTAATGA 59.616 33.333 0.00 0.00 41.62 2.57
3881 6539 9.593565 TGAGGAGTTAGATATACATGAGTTGAT 57.406 33.333 0.00 0.00 0.00 2.57
3900 6559 9.696917 GAGTTGATTAAATTTGTTCTGGTTCAT 57.303 29.630 0.00 0.00 0.00 2.57
4157 6832 8.124199 GTGATTTCACAGCAAACATTTCAATTT 58.876 29.630 5.84 0.00 45.75 1.82
4159 6834 7.846644 TTTCACAGCAAACATTTCAATTTCT 57.153 28.000 0.00 0.00 0.00 2.52
4162 6837 8.939201 TCACAGCAAACATTTCAATTTCTTAA 57.061 26.923 0.00 0.00 0.00 1.85
4163 6838 9.033481 TCACAGCAAACATTTCAATTTCTTAAG 57.967 29.630 0.00 0.00 0.00 1.85
4164 6839 8.819974 CACAGCAAACATTTCAATTTCTTAAGT 58.180 29.630 1.63 0.00 0.00 2.24
4165 6840 9.034544 ACAGCAAACATTTCAATTTCTTAAGTC 57.965 29.630 1.63 0.00 0.00 3.01
4167 6842 9.034544 AGCAAACATTTCAATTTCTTAAGTCAC 57.965 29.630 1.63 0.00 0.00 3.67
4174 6849 8.856490 TTTCAATTTCTTAAGTCACTGAAAGC 57.144 30.769 15.25 0.00 37.60 3.51
4175 6850 7.807977 TCAATTTCTTAAGTCACTGAAAGCT 57.192 32.000 1.63 0.00 37.60 3.74
4176 6851 8.225603 TCAATTTCTTAAGTCACTGAAAGCTT 57.774 30.769 1.63 0.00 37.60 3.74
4177 6852 9.337396 TCAATTTCTTAAGTCACTGAAAGCTTA 57.663 29.630 0.00 0.00 37.60 3.09
4181 6856 9.998106 TTTCTTAAGTCACTGAAAGCTTATAGT 57.002 29.630 0.00 4.42 37.60 2.12
4183 6858 9.998106 TCTTAAGTCACTGAAAGCTTATAGTTT 57.002 29.630 11.60 7.76 37.60 2.66
4211 6886 8.771920 ATCATATAAGAGAAACACGTTCACAA 57.228 30.769 0.00 0.00 38.86 3.33
4237 7286 1.809547 CCCATGCACGAATACACACAA 59.190 47.619 0.00 0.00 0.00 3.33
4239 7288 3.491356 CCATGCACGAATACACACAAAG 58.509 45.455 0.00 0.00 0.00 2.77
4262 7311 9.553064 AAAGTATCTAGGAATTTCTAGCATGTG 57.447 33.333 15.13 0.00 37.30 3.21
4270 7319 8.668510 AGGAATTTCTAGCATGTGTTATACAG 57.331 34.615 0.00 0.00 43.80 2.74
4340 7389 5.175859 TCGATTGGTTCCAGAAACATCTAC 58.824 41.667 0.00 0.00 37.91 2.59
4343 7392 4.553330 TGGTTCCAGAAACATCTACTCC 57.447 45.455 0.00 0.00 39.81 3.85
4346 7395 5.073144 TGGTTCCAGAAACATCTACTCCTTT 59.927 40.000 0.00 0.00 39.81 3.11
4347 7396 5.644206 GGTTCCAGAAACATCTACTCCTTTC 59.356 44.000 0.00 0.00 39.81 2.62
4348 7397 6.231211 GTTCCAGAAACATCTACTCCTTTCA 58.769 40.000 0.00 0.00 37.82 2.69
4349 7398 6.433847 TCCAGAAACATCTACTCCTTTCAA 57.566 37.500 0.00 0.00 0.00 2.69
4350 7399 6.231211 TCCAGAAACATCTACTCCTTTCAAC 58.769 40.000 0.00 0.00 0.00 3.18
4351 7400 6.043243 TCCAGAAACATCTACTCCTTTCAACT 59.957 38.462 0.00 0.00 0.00 3.16
4352 7401 6.712547 CCAGAAACATCTACTCCTTTCAACTT 59.287 38.462 0.00 0.00 0.00 2.66
4353 7402 7.095017 CCAGAAACATCTACTCCTTTCAACTTC 60.095 40.741 0.00 0.00 0.00 3.01
4354 7403 7.442364 CAGAAACATCTACTCCTTTCAACTTCA 59.558 37.037 0.00 0.00 0.00 3.02
4355 7404 7.659390 AGAAACATCTACTCCTTTCAACTTCAG 59.341 37.037 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.928757 CACTGCTACAATCACTGCTCTC 59.071 50.000 0.00 0.00 0.00 3.20
27 28 2.354503 CCACTGCTACAATCACTGCTCT 60.355 50.000 0.00 0.00 0.00 4.09
31 32 1.742761 CCCCACTGCTACAATCACTG 58.257 55.000 0.00 0.00 0.00 3.66
32 33 0.035056 GCCCCACTGCTACAATCACT 60.035 55.000 0.00 0.00 0.00 3.41
34 35 0.035152 CTGCCCCACTGCTACAATCA 60.035 55.000 0.00 0.00 0.00 2.57
35 36 0.749454 CCTGCCCCACTGCTACAATC 60.749 60.000 0.00 0.00 0.00 2.67
38 39 4.033776 GCCTGCCCCACTGCTACA 62.034 66.667 0.00 0.00 0.00 2.74
49 50 2.287457 TACCATACGTGTCGCCTGCC 62.287 60.000 0.00 0.00 0.00 4.85
53 54 0.870307 CTGCTACCATACGTGTCGCC 60.870 60.000 0.00 0.00 0.00 5.54
57 58 2.139323 TCCTCTGCTACCATACGTGT 57.861 50.000 0.00 0.00 0.00 4.49
62 63 4.454678 CTGCATTTTCCTCTGCTACCATA 58.545 43.478 0.00 0.00 39.16 2.74
73 74 0.813184 CATCGGTGCTGCATTTTCCT 59.187 50.000 5.27 0.00 0.00 3.36
75 76 0.810648 TCCATCGGTGCTGCATTTTC 59.189 50.000 5.27 0.00 0.00 2.29
78 79 1.452651 CCTCCATCGGTGCTGCATT 60.453 57.895 5.27 0.00 0.00 3.56
80 81 4.783621 GCCTCCATCGGTGCTGCA 62.784 66.667 0.00 0.00 0.00 4.41
83 84 2.685017 TCTGCCTCCATCGGTGCT 60.685 61.111 0.00 0.00 0.00 4.40
87 88 2.108566 CTGCTCTGCCTCCATCGG 59.891 66.667 0.00 0.00 0.00 4.18
88 89 2.108566 CCTGCTCTGCCTCCATCG 59.891 66.667 0.00 0.00 0.00 3.84
96 97 1.888512 CTCCTCTATCTCCTGCTCTGC 59.111 57.143 0.00 0.00 0.00 4.26
98 99 1.203050 GCCTCCTCTATCTCCTGCTCT 60.203 57.143 0.00 0.00 0.00 4.09
106 107 1.356059 TCTATGCCGCCTCCTCTATCT 59.644 52.381 0.00 0.00 0.00 1.98
109 110 1.550327 CATCTATGCCGCCTCCTCTA 58.450 55.000 0.00 0.00 0.00 2.43
114 115 1.002868 ATGCCATCTATGCCGCCTC 60.003 57.895 0.00 0.00 0.00 4.70
131 132 0.109342 GGTCAGATCATTGGCCGGAT 59.891 55.000 5.05 0.30 32.34 4.18
133 134 4.147701 GGTCAGATCATTGGCCGG 57.852 61.111 0.00 0.00 32.34 6.13
136 137 2.245159 TCATCGGTCAGATCATTGGC 57.755 50.000 0.00 0.00 37.52 4.52
146 147 0.249868 GGCGGATCAATCATCGGTCA 60.250 55.000 0.00 0.00 36.64 4.02
148 149 0.397941 ATGGCGGATCAATCATCGGT 59.602 50.000 0.00 0.00 34.88 4.69
150 151 0.167470 GCATGGCGGATCAATCATCG 59.833 55.000 0.00 0.00 31.26 3.84
152 153 1.202842 TGAGCATGGCGGATCAATCAT 60.203 47.619 0.00 0.00 28.85 2.45
153 154 0.180878 TGAGCATGGCGGATCAATCA 59.819 50.000 0.00 0.00 28.85 2.57
159 160 1.417517 TCAAGTATGAGCATGGCGGAT 59.582 47.619 0.00 0.00 0.00 4.18
214 224 8.519526 TCAACAGTTCAATGAAGTAACAAAGTT 58.480 29.630 2.64 0.21 0.00 2.66
218 228 9.299963 CAATTCAACAGTTCAATGAAGTAACAA 57.700 29.630 2.64 0.00 36.59 2.83
223 233 7.099266 TCACAATTCAACAGTTCAATGAAGT 57.901 32.000 0.00 0.00 36.59 3.01
249 259 8.126074 GCACGTGGATCATATAACACAAAATTA 58.874 33.333 18.88 0.00 33.62 1.40
255 265 4.130286 TGCACGTGGATCATATAACACA 57.870 40.909 18.88 0.00 33.62 3.72
260 270 3.683365 AGCATGCACGTGGATCATATA 57.317 42.857 20.57 0.00 0.00 0.86
279 289 5.233902 TGCAAACGTTCAAATCCATGAAAAG 59.766 36.000 0.00 0.00 40.76 2.27
280 290 5.111989 TGCAAACGTTCAAATCCATGAAAA 58.888 33.333 0.00 0.00 40.76 2.29
281 291 4.686972 TGCAAACGTTCAAATCCATGAAA 58.313 34.783 0.00 0.00 40.76 2.69
282 292 4.313277 TGCAAACGTTCAAATCCATGAA 57.687 36.364 0.00 0.00 36.99 2.57
283 293 3.998099 TGCAAACGTTCAAATCCATGA 57.002 38.095 0.00 0.00 0.00 3.07
284 294 4.325204 CAGATGCAAACGTTCAAATCCATG 59.675 41.667 0.00 0.00 0.00 3.66
285 295 4.218200 TCAGATGCAAACGTTCAAATCCAT 59.782 37.500 0.00 0.00 0.00 3.41
286 296 3.567585 TCAGATGCAAACGTTCAAATCCA 59.432 39.130 0.00 0.00 0.00 3.41
287 297 4.159377 TCAGATGCAAACGTTCAAATCC 57.841 40.909 0.00 0.00 0.00 3.01
291 301 6.581919 CACAATTATCAGATGCAAACGTTCAA 59.418 34.615 0.00 0.00 0.00 2.69
295 305 4.414852 GCACAATTATCAGATGCAAACGT 58.585 39.130 0.00 0.00 36.30 3.99
296 306 3.792956 GGCACAATTATCAGATGCAAACG 59.207 43.478 0.00 0.00 38.05 3.60
305 315 0.664761 CGGGCAGGCACAATTATCAG 59.335 55.000 0.00 0.00 0.00 2.90
306 316 0.751277 CCGGGCAGGCACAATTATCA 60.751 55.000 0.00 0.00 0.00 2.15
324 334 1.882352 CGGCCCCTCATATTTACTGCC 60.882 57.143 0.00 0.00 0.00 4.85
325 335 1.523758 CGGCCCCTCATATTTACTGC 58.476 55.000 0.00 0.00 0.00 4.40
345 355 2.043652 CCCATGGACAAGCCTGGG 60.044 66.667 15.22 0.00 43.85 4.45
349 359 1.228552 ACACACCCATGGACAAGCC 60.229 57.895 15.22 0.00 37.10 4.35
350 360 0.537143 TGACACACCCATGGACAAGC 60.537 55.000 15.22 0.00 0.00 4.01
352 362 0.110295 CCTGACACACCCATGGACAA 59.890 55.000 15.22 0.00 0.00 3.18
353 363 1.760527 CCTGACACACCCATGGACA 59.239 57.895 15.22 2.71 0.00 4.02
354 364 1.002134 CCCTGACACACCCATGGAC 60.002 63.158 15.22 0.00 0.00 4.02
355 365 2.905996 GCCCTGACACACCCATGGA 61.906 63.158 15.22 0.00 0.00 3.41
356 366 2.361610 GCCCTGACACACCCATGG 60.362 66.667 4.14 4.14 0.00 3.66
357 367 2.747460 CGCCCTGACACACCCATG 60.747 66.667 0.00 0.00 0.00 3.66
358 368 3.249189 ACGCCCTGACACACCCAT 61.249 61.111 0.00 0.00 0.00 4.00
359 369 4.248842 CACGCCCTGACACACCCA 62.249 66.667 0.00 0.00 0.00 4.51
361 371 2.665185 GACACGCCCTGACACACC 60.665 66.667 0.00 0.00 0.00 4.16
362 372 2.665185 GGACACGCCCTGACACAC 60.665 66.667 0.00 0.00 0.00 3.82
363 373 3.157949 TGGACACGCCCTGACACA 61.158 61.111 0.00 0.00 34.97 3.72
364 374 2.665185 GTGGACACGCCCTGACAC 60.665 66.667 0.00 0.00 34.97 3.67
380 390 2.689983 GCAAATCTCCATGGATTTCCGT 59.310 45.455 16.63 0.00 42.02 4.69
381 391 2.035066 GGCAAATCTCCATGGATTTCCG 59.965 50.000 16.63 2.86 42.02 4.30
382 392 3.033184 TGGCAAATCTCCATGGATTTCC 58.967 45.455 16.63 11.43 42.02 3.13
383 393 4.161001 ACTTGGCAAATCTCCATGGATTTC 59.839 41.667 16.63 0.92 42.02 2.17
384 394 4.098894 ACTTGGCAAATCTCCATGGATTT 58.901 39.130 16.63 11.30 43.92 2.17
385 395 3.703052 GACTTGGCAAATCTCCATGGATT 59.297 43.478 16.63 4.60 37.51 3.01
386 396 3.294214 GACTTGGCAAATCTCCATGGAT 58.706 45.455 16.63 0.00 34.23 3.41
388 398 1.753073 GGACTTGGCAAATCTCCATGG 59.247 52.381 4.97 4.97 34.23 3.66
389 399 1.402968 CGGACTTGGCAAATCTCCATG 59.597 52.381 8.72 0.00 35.56 3.66
390 400 1.683011 CCGGACTTGGCAAATCTCCAT 60.683 52.381 8.72 0.00 32.92 3.41
391 401 0.322456 CCGGACTTGGCAAATCTCCA 60.322 55.000 8.72 0.00 0.00 3.86
394 404 1.247567 CAACCGGACTTGGCAAATCT 58.752 50.000 9.46 0.00 0.00 2.40
402 412 2.271800 GAGCATCTACAACCGGACTTG 58.728 52.381 9.46 5.71 0.00 3.16
426 436 8.908903 CCAATTACATATTAGTAAACCAAGGCA 58.091 33.333 0.00 0.00 37.50 4.75
427 437 8.357402 CCCAATTACATATTAGTAAACCAAGGC 58.643 37.037 0.00 0.00 37.50 4.35
428 438 9.416284 ACCCAATTACATATTAGTAAACCAAGG 57.584 33.333 0.00 0.00 37.50 3.61
605 621 9.869757 AAATATTAAATTGTGAAGTTGCCCTAC 57.130 29.630 0.00 0.00 0.00 3.18
731 966 8.705134 GTGTAACCCTACAAAATTAAATTGTGC 58.295 33.333 16.18 0.00 40.95 4.57
746 981 9.752961 AACAAATTAAATTGTGTGTAACCCTAC 57.247 29.630 9.61 0.00 42.49 3.18
748 983 9.674068 AAAACAAATTAAATTGTGTGTAACCCT 57.326 25.926 9.61 0.00 42.49 4.34
755 990 9.994432 TTGCCTAAAAACAAATTAAATTGTGTG 57.006 25.926 9.61 0.00 42.49 3.82
800 1035 9.651913 CCATTTAAATTGTGTAGTTGCCTAATT 57.348 29.630 0.00 0.00 0.00 1.40
801 1036 9.030452 TCCATTTAAATTGTGTAGTTGCCTAAT 57.970 29.630 0.00 0.00 0.00 1.73
905 1197 1.420312 GTTTCGGCAAGTCGCTAGC 59.580 57.895 4.06 4.06 41.91 3.42
906 1198 1.359459 GGGTTTCGGCAAGTCGCTAG 61.359 60.000 0.00 0.00 41.91 3.42
907 1199 1.375013 GGGTTTCGGCAAGTCGCTA 60.375 57.895 0.00 0.00 41.91 4.26
908 1200 2.668550 GGGTTTCGGCAAGTCGCT 60.669 61.111 0.00 0.00 41.91 4.93
909 1201 2.668550 AGGGTTTCGGCAAGTCGC 60.669 61.111 0.00 0.00 41.28 5.19
911 1203 3.562635 CGAGGGTTTCGGCAAGTC 58.437 61.111 0.00 0.00 45.54 3.01
1042 1377 2.242113 GCTCCATATTGGCGAGCAG 58.758 57.895 3.51 0.00 46.63 4.24
1101 1436 3.064958 CGTAGACGAAATAGAGCACCAGA 59.935 47.826 0.00 0.00 43.02 3.86
1817 2164 2.357517 CGCTTTGGCTGACGAGGT 60.358 61.111 0.00 0.00 36.09 3.85
2005 2364 1.496001 TGGCAGAATGTATCCCAGCAT 59.504 47.619 0.00 0.00 39.31 3.79
2056 2415 8.833231 ATTAAATTAGGATGTACCACGATGAG 57.167 34.615 0.00 0.00 42.04 2.90
2142 2547 4.339247 CCTGTAAATAATGCACCCAAGGAG 59.661 45.833 0.00 0.00 0.00 3.69
2239 2652 4.279420 AGAAAACCAGGCACTTTCTTGATC 59.721 41.667 6.11 0.00 36.27 2.92
2240 2653 4.218312 AGAAAACCAGGCACTTTCTTGAT 58.782 39.130 6.11 0.00 36.27 2.57
2317 2885 1.401148 GCTCTGACAATGCAGCAAGTG 60.401 52.381 8.46 8.07 35.86 3.16
2318 2886 0.879765 GCTCTGACAATGCAGCAAGT 59.120 50.000 0.00 0.36 35.86 3.16
2319 2887 1.135660 CAGCTCTGACAATGCAGCAAG 60.136 52.381 0.00 0.00 35.86 4.01
2320 2888 0.879090 CAGCTCTGACAATGCAGCAA 59.121 50.000 0.00 0.00 35.86 3.91
2321 2889 0.035739 TCAGCTCTGACAATGCAGCA 59.964 50.000 0.00 0.00 35.86 4.41
2322 2890 1.380524 ATCAGCTCTGACAATGCAGC 58.619 50.000 1.15 0.00 43.11 5.25
2323 2891 5.752892 AATAATCAGCTCTGACAATGCAG 57.247 39.130 1.15 0.00 43.11 4.41
2324 2892 7.040892 GGATAAATAATCAGCTCTGACAATGCA 60.041 37.037 1.15 0.00 43.11 3.96
2329 2897 7.365497 TGAGGATAAATAATCAGCTCTGACA 57.635 36.000 1.15 0.00 43.11 3.58
2366 2934 9.159254 TGACTAATATGTTCAGGGATCTTACAT 57.841 33.333 0.00 0.00 33.18 2.29
2404 2972 2.060004 CTGCAGCAGGCCATCAATCG 62.060 60.000 15.35 0.00 43.89 3.34
2405 2973 1.734137 CTGCAGCAGGCCATCAATC 59.266 57.895 15.35 0.00 43.89 2.67
2406 2974 2.423898 GCTGCAGCAGGCCATCAAT 61.424 57.895 33.36 0.00 43.89 2.57
2407 2975 3.066190 GCTGCAGCAGGCCATCAA 61.066 61.111 33.36 0.00 43.89 2.57
2415 2983 8.957901 TATGAGGACATATGATGCTGCAGCAG 62.958 46.154 40.93 29.47 44.62 4.24
2416 2984 6.565248 ATGAGGACATATGATGCTGCAGCA 62.565 45.833 41.05 41.05 44.43 4.41
2417 2985 1.805345 GAGGACATATGATGCTGCAGC 59.195 52.381 31.89 31.89 42.50 5.25
2418 2986 3.121738 TGAGGACATATGATGCTGCAG 57.878 47.619 10.11 10.11 0.00 4.41
2419 2987 3.782656 ATGAGGACATATGATGCTGCA 57.217 42.857 10.38 4.13 34.71 4.41
2420 2988 5.082251 TCTATGAGGACATATGATGCTGC 57.918 43.478 10.38 0.00 38.17 5.25
2421 2989 8.693625 TCTTATCTATGAGGACATATGATGCTG 58.306 37.037 10.38 0.00 38.17 4.41
2422 2990 8.835550 TCTTATCTATGAGGACATATGATGCT 57.164 34.615 10.38 4.40 38.17 3.79
2423 2991 9.695526 GATCTTATCTATGAGGACATATGATGC 57.304 37.037 10.38 0.00 38.17 3.91
2425 2993 9.378504 GGGATCTTATCTATGAGGACATATGAT 57.621 37.037 10.38 0.00 38.17 2.45
2426 2994 8.573097 AGGGATCTTATCTATGAGGACATATGA 58.427 37.037 10.38 0.00 38.17 2.15
2427 2995 8.640651 CAGGGATCTTATCTATGAGGACATATG 58.359 40.741 0.00 0.00 38.17 1.78
2428 2996 8.573097 TCAGGGATCTTATCTATGAGGACATAT 58.427 37.037 0.00 0.00 38.17 1.78
2429 2997 7.944176 TCAGGGATCTTATCTATGAGGACATA 58.056 38.462 0.00 0.00 37.87 2.29
2430 2998 6.809428 TCAGGGATCTTATCTATGAGGACAT 58.191 40.000 0.00 0.00 40.16 3.06
2431 2999 6.219537 TCAGGGATCTTATCTATGAGGACA 57.780 41.667 0.00 0.00 0.00 4.02
2432 3000 6.723977 AGTTCAGGGATCTTATCTATGAGGAC 59.276 42.308 0.00 0.00 0.00 3.85
2433 3001 6.868826 AGTTCAGGGATCTTATCTATGAGGA 58.131 40.000 0.00 0.00 0.00 3.71
2434 3002 8.694540 CATAGTTCAGGGATCTTATCTATGAGG 58.305 40.741 0.00 0.00 37.03 3.86
2435 3003 9.473007 TCATAGTTCAGGGATCTTATCTATGAG 57.527 37.037 14.87 0.00 38.14 2.90
2436 3004 9.473007 CTCATAGTTCAGGGATCTTATCTATGA 57.527 37.037 16.42 16.42 39.61 2.15
2437 3005 9.253832 ACTCATAGTTCAGGGATCTTATCTATG 57.746 37.037 0.00 0.00 36.55 2.23
2438 3006 9.474313 GACTCATAGTTCAGGGATCTTATCTAT 57.526 37.037 0.00 0.00 0.00 1.98
2439 3007 8.448816 TGACTCATAGTTCAGGGATCTTATCTA 58.551 37.037 0.00 0.00 0.00 1.98
2440 3008 7.301420 TGACTCATAGTTCAGGGATCTTATCT 58.699 38.462 0.00 0.00 0.00 1.98
2441 3009 7.450014 TCTGACTCATAGTTCAGGGATCTTATC 59.550 40.741 0.00 0.00 30.01 1.75
2442 3010 7.301420 TCTGACTCATAGTTCAGGGATCTTAT 58.699 38.462 0.00 0.00 30.01 1.73
2443 3011 6.673583 TCTGACTCATAGTTCAGGGATCTTA 58.326 40.000 0.00 0.00 30.01 2.10
2444 3012 5.523588 TCTGACTCATAGTTCAGGGATCTT 58.476 41.667 0.00 0.00 30.01 2.40
2445 3013 5.136068 TCTGACTCATAGTTCAGGGATCT 57.864 43.478 0.00 0.00 30.01 2.75
2446 3014 6.418057 AATCTGACTCATAGTTCAGGGATC 57.582 41.667 0.00 0.00 30.01 3.36
2447 3015 7.921041 TTAATCTGACTCATAGTTCAGGGAT 57.079 36.000 0.00 0.00 30.01 3.85
2448 3016 7.921041 ATTAATCTGACTCATAGTTCAGGGA 57.079 36.000 0.00 0.00 30.01 4.20
2534 3297 1.472026 GGCAGGCCAAATTAGCACATG 60.472 52.381 5.01 0.00 35.81 3.21
2545 3308 0.817013 GAAATCAATCGGCAGGCCAA 59.183 50.000 5.01 0.00 35.37 4.52
2941 3704 4.748701 AGTAGTACTTGAGGTCAAAGGGA 58.251 43.478 0.00 0.00 35.15 4.20
2977 3742 7.652507 GCTGCTACTAATTAACTTACGGAGATT 59.347 37.037 0.00 0.00 0.00 2.40
3008 3773 3.717842 TTGCACCACAAGAGGTACC 57.282 52.632 2.73 2.73 40.77 3.34
3048 3821 2.832129 TGTTAGGCCCAACAACACAAAA 59.168 40.909 14.78 0.00 35.53 2.44
3128 3905 0.698238 TCCAGCCACATAAGCCTTGT 59.302 50.000 0.00 0.00 0.00 3.16
3145 3938 1.153289 ACCTCATCGTGCAGCATCC 60.153 57.895 0.00 0.00 0.00 3.51
3162 3962 9.893305 CCCCACAATATTTTTATCTAATTCGAC 57.107 33.333 0.00 0.00 0.00 4.20
3179 3979 7.034967 AGAAATTGGTAACTACCCCACAATA 57.965 36.000 3.45 0.00 45.87 1.90
3180 3980 5.899278 AGAAATTGGTAACTACCCCACAAT 58.101 37.500 3.45 0.00 45.87 2.71
3183 3983 5.318630 TGAAGAAATTGGTAACTACCCCAC 58.681 41.667 3.45 0.00 45.87 4.61
3184 3984 5.586155 TGAAGAAATTGGTAACTACCCCA 57.414 39.130 3.45 0.00 45.87 4.96
3186 3986 7.696992 TGATTGAAGAAATTGGTAACTACCC 57.303 36.000 3.45 0.00 45.87 3.69
3187 3987 8.573035 TGTTGATTGAAGAAATTGGTAACTACC 58.427 33.333 0.00 0.00 46.62 3.18
3189 3989 8.792633 CCTGTTGATTGAAGAAATTGGTAACTA 58.207 33.333 0.00 0.00 37.61 2.24
3190 3990 7.255942 CCCTGTTGATTGAAGAAATTGGTAACT 60.256 37.037 0.00 0.00 37.61 2.24
3191 3991 6.868339 CCCTGTTGATTGAAGAAATTGGTAAC 59.132 38.462 0.00 0.00 0.00 2.50
3192 3992 6.518200 GCCCTGTTGATTGAAGAAATTGGTAA 60.518 38.462 0.00 0.00 0.00 2.85
3193 3993 5.047377 GCCCTGTTGATTGAAGAAATTGGTA 60.047 40.000 0.00 0.00 0.00 3.25
3194 3994 4.262592 GCCCTGTTGATTGAAGAAATTGGT 60.263 41.667 0.00 0.00 0.00 3.67
3195 3995 4.020839 AGCCCTGTTGATTGAAGAAATTGG 60.021 41.667 0.00 0.00 0.00 3.16
3196 3996 5.143376 AGCCCTGTTGATTGAAGAAATTG 57.857 39.130 0.00 0.00 0.00 2.32
3197 3997 6.894103 AGATAGCCCTGTTGATTGAAGAAATT 59.106 34.615 0.00 0.00 0.00 1.82
3198 3998 6.430007 AGATAGCCCTGTTGATTGAAGAAAT 58.570 36.000 0.00 0.00 0.00 2.17
3199 3999 5.819991 AGATAGCCCTGTTGATTGAAGAAA 58.180 37.500 0.00 0.00 0.00 2.52
3200 4000 5.441718 AGATAGCCCTGTTGATTGAAGAA 57.558 39.130 0.00 0.00 0.00 2.52
3201 4001 5.663106 ACTAGATAGCCCTGTTGATTGAAGA 59.337 40.000 0.00 0.00 0.00 2.87
3203 4003 5.957771 ACTAGATAGCCCTGTTGATTGAA 57.042 39.130 0.00 0.00 0.00 2.69
3204 4004 6.040955 CACTACTAGATAGCCCTGTTGATTGA 59.959 42.308 0.00 0.00 33.73 2.57
3211 4011 4.252570 ACACACTACTAGATAGCCCTGT 57.747 45.455 0.00 0.00 33.73 4.00
3250 4078 5.660460 TGCACGAGATAGTAATGACATTGT 58.340 37.500 11.05 0.88 0.00 2.71
3262 4090 4.504461 GGTATCAACAACTGCACGAGATAG 59.496 45.833 0.00 0.00 0.00 2.08
3266 4094 2.412870 TGGTATCAACAACTGCACGAG 58.587 47.619 0.00 0.00 0.00 4.18
3274 4102 8.761575 ACAAATTGATTCATGGTATCAACAAC 57.238 30.769 19.63 0.00 42.82 3.32
3281 4109 8.698210 AGTGCATAACAAATTGATTCATGGTAT 58.302 29.630 0.00 0.00 0.00 2.73
3296 4124 6.607600 AGTGAGACCTATCTAGTGCATAACAA 59.392 38.462 0.00 0.00 34.34 2.83
3306 4134 4.699637 AGTCGACAGTGAGACCTATCTAG 58.300 47.826 19.50 0.00 38.08 2.43
3312 4140 1.883275 CTCAAGTCGACAGTGAGACCT 59.117 52.381 30.80 3.24 41.08 3.85
3358 4186 8.836413 TCTGTGAAAATACAAACTAAAGACCAG 58.164 33.333 0.00 0.00 0.00 4.00
3374 4202 9.274206 GTCTCTTTAGGTAAAGTCTGTGAAAAT 57.726 33.333 8.90 0.00 42.43 1.82
3378 4206 5.048224 CCGTCTCTTTAGGTAAAGTCTGTGA 60.048 44.000 8.90 0.94 42.43 3.58
3379 4207 5.048224 TCCGTCTCTTTAGGTAAAGTCTGTG 60.048 44.000 8.90 0.00 42.43 3.66
3380 4208 5.075493 TCCGTCTCTTTAGGTAAAGTCTGT 58.925 41.667 8.90 0.00 42.43 3.41
3381 4209 5.183522 ACTCCGTCTCTTTAGGTAAAGTCTG 59.816 44.000 8.90 2.87 42.43 3.51
3383 4211 5.641783 ACTCCGTCTCTTTAGGTAAAGTC 57.358 43.478 8.90 2.37 42.43 3.01
3384 4212 6.006449 TGTACTCCGTCTCTTTAGGTAAAGT 58.994 40.000 8.90 0.00 42.43 2.66
3385 4213 6.506500 TGTACTCCGTCTCTTTAGGTAAAG 57.493 41.667 3.45 3.45 43.01 1.85
3387 4215 5.948162 ACATGTACTCCGTCTCTTTAGGTAA 59.052 40.000 0.00 0.00 0.00 2.85
3389 4217 4.342359 ACATGTACTCCGTCTCTTTAGGT 58.658 43.478 0.00 0.00 0.00 3.08
3390 4218 4.985538 ACATGTACTCCGTCTCTTTAGG 57.014 45.455 0.00 0.00 0.00 2.69
3393 4221 5.470047 AGAAACATGTACTCCGTCTCTTT 57.530 39.130 0.00 0.00 0.00 2.52
3394 4222 5.244178 AGAAGAAACATGTACTCCGTCTCTT 59.756 40.000 0.00 0.00 0.00 2.85
3395 4223 4.767928 AGAAGAAACATGTACTCCGTCTCT 59.232 41.667 0.00 0.00 0.00 3.10
3396 4224 5.061920 AGAAGAAACATGTACTCCGTCTC 57.938 43.478 0.00 0.00 0.00 3.36
3397 4225 5.470047 AAGAAGAAACATGTACTCCGTCT 57.530 39.130 0.00 2.71 0.00 4.18
3398 4226 6.018180 ACAAAAGAAGAAACATGTACTCCGTC 60.018 38.462 0.00 0.42 0.00 4.79
3399 4227 5.820947 ACAAAAGAAGAAACATGTACTCCGT 59.179 36.000 0.00 0.00 0.00 4.69
3400 4228 6.300354 ACAAAAGAAGAAACATGTACTCCG 57.700 37.500 0.00 0.00 0.00 4.63
3410 4238 9.222916 GCAGTAAGACTTAACAAAAGAAGAAAC 57.777 33.333 0.00 0.00 0.00 2.78
3411 4239 8.403236 GGCAGTAAGACTTAACAAAAGAAGAAA 58.597 33.333 0.00 0.00 0.00 2.52
3412 4240 7.773690 AGGCAGTAAGACTTAACAAAAGAAGAA 59.226 33.333 0.00 0.00 20.59 2.52
3414 4242 7.308049 GGAGGCAGTAAGACTTAACAAAAGAAG 60.308 40.741 0.00 0.00 33.72 2.85
3429 4307 3.181485 CCTAAAGAGACGGAGGCAGTAAG 60.181 52.174 0.00 0.00 0.00 2.34
3435 4315 1.549170 TGTTCCTAAAGAGACGGAGGC 59.451 52.381 0.00 0.00 0.00 4.70
3440 4320 5.331876 AGATTCCTGTTCCTAAAGAGACG 57.668 43.478 0.00 0.00 0.00 4.18
3443 4323 9.508642 AAACTAAAGATTCCTGTTCCTAAAGAG 57.491 33.333 0.00 0.00 0.00 2.85
3444 4324 9.503399 GAAACTAAAGATTCCTGTTCCTAAAGA 57.497 33.333 0.00 0.00 0.00 2.52
3446 4326 7.094933 GCGAAACTAAAGATTCCTGTTCCTAAA 60.095 37.037 0.00 0.00 0.00 1.85
3448 4328 5.873164 GCGAAACTAAAGATTCCTGTTCCTA 59.127 40.000 0.00 0.00 0.00 2.94
3450 4330 4.142665 GGCGAAACTAAAGATTCCTGTTCC 60.143 45.833 0.00 0.00 0.00 3.62
3451 4331 4.695928 AGGCGAAACTAAAGATTCCTGTTC 59.304 41.667 0.00 0.00 0.00 3.18
3453 4333 4.287766 AGGCGAAACTAAAGATTCCTGT 57.712 40.909 0.00 0.00 0.00 4.00
3454 4334 4.095036 GGAAGGCGAAACTAAAGATTCCTG 59.905 45.833 0.00 0.00 33.69 3.86
3455 4335 4.262617 GGAAGGCGAAACTAAAGATTCCT 58.737 43.478 0.00 0.00 33.69 3.36
3456 4336 4.007659 TGGAAGGCGAAACTAAAGATTCC 58.992 43.478 0.00 0.00 36.37 3.01
3457 4337 5.622770 TTGGAAGGCGAAACTAAAGATTC 57.377 39.130 0.00 0.00 0.00 2.52
3459 4339 6.213677 GTTTTTGGAAGGCGAAACTAAAGAT 58.786 36.000 0.00 0.00 0.00 2.40
3460 4340 5.584442 GTTTTTGGAAGGCGAAACTAAAGA 58.416 37.500 0.00 0.00 0.00 2.52
3461 4341 4.439776 CGTTTTTGGAAGGCGAAACTAAAG 59.560 41.667 0.00 0.00 31.58 1.85
3465 4345 1.746787 ACGTTTTTGGAAGGCGAAACT 59.253 42.857 0.00 0.00 31.58 2.66
3466 4346 2.114056 GACGTTTTTGGAAGGCGAAAC 58.886 47.619 0.00 0.00 0.00 2.78
3467 4347 2.018515 AGACGTTTTTGGAAGGCGAAA 58.981 42.857 0.00 0.00 0.00 3.46
3469 4349 1.670791 AAGACGTTTTTGGAAGGCGA 58.329 45.000 0.00 0.00 0.00 5.54
3470 4350 3.824414 ATAAGACGTTTTTGGAAGGCG 57.176 42.857 0.00 0.00 0.00 5.52
3471 4351 7.062956 CCAAATTATAAGACGTTTTTGGAAGGC 59.937 37.037 16.13 0.00 43.59 4.35
3472 4352 7.544217 CCCAAATTATAAGACGTTTTTGGAAGG 59.456 37.037 20.31 6.85 43.59 3.46
3473 4353 8.301002 TCCCAAATTATAAGACGTTTTTGGAAG 58.699 33.333 20.31 9.93 43.59 3.46
3474 4354 8.083462 GTCCCAAATTATAAGACGTTTTTGGAA 58.917 33.333 20.31 4.74 43.59 3.53
3475 4355 7.230913 TGTCCCAAATTATAAGACGTTTTTGGA 59.769 33.333 20.31 10.61 43.59 3.53
3476 4356 7.371936 TGTCCCAAATTATAAGACGTTTTTGG 58.628 34.615 14.90 14.90 41.62 3.28
3478 4358 8.398878 TCTGTCCCAAATTATAAGACGTTTTT 57.601 30.769 0.00 0.00 0.00 1.94
3489 4369 9.799106 CAGTAATAATCCTCTGTCCCAAATTAT 57.201 33.333 0.00 0.00 0.00 1.28
3490 4370 8.998814 TCAGTAATAATCCTCTGTCCCAAATTA 58.001 33.333 0.00 0.00 0.00 1.40
3491 4371 7.872138 TCAGTAATAATCCTCTGTCCCAAATT 58.128 34.615 0.00 0.00 0.00 1.82
3492 4372 7.451731 TCAGTAATAATCCTCTGTCCCAAAT 57.548 36.000 0.00 0.00 0.00 2.32
3494 4374 7.282585 CAATCAGTAATAATCCTCTGTCCCAA 58.717 38.462 0.00 0.00 0.00 4.12
3496 4376 5.703130 GCAATCAGTAATAATCCTCTGTCCC 59.297 44.000 0.00 0.00 0.00 4.46
3497 4377 6.426328 CAGCAATCAGTAATAATCCTCTGTCC 59.574 42.308 0.00 0.00 0.00 4.02
3498 4378 6.073331 GCAGCAATCAGTAATAATCCTCTGTC 60.073 42.308 0.00 0.00 0.00 3.51
3499 4379 5.762218 GCAGCAATCAGTAATAATCCTCTGT 59.238 40.000 0.00 0.00 0.00 3.41
3500 4380 5.761726 TGCAGCAATCAGTAATAATCCTCTG 59.238 40.000 0.00 0.00 0.00 3.35
3502 4382 5.762218 ACTGCAGCAATCAGTAATAATCCTC 59.238 40.000 15.27 0.00 42.45 3.71
3503 4383 5.688807 ACTGCAGCAATCAGTAATAATCCT 58.311 37.500 15.27 0.00 42.45 3.24
3507 4391 4.985413 GCAACTGCAGCAATCAGTAATAA 58.015 39.130 15.27 0.00 43.36 1.40
3541 4425 3.363178 CTCTTGTTTTGTGAAGCGTTCC 58.637 45.455 0.00 0.00 0.00 3.62
3545 4429 1.065401 TGGCTCTTGTTTTGTGAAGCG 59.935 47.619 0.00 0.00 0.00 4.68
3546 4430 2.869233 TGGCTCTTGTTTTGTGAAGC 57.131 45.000 0.00 0.00 0.00 3.86
3551 4435 5.183904 GGTGAAGATATGGCTCTTGTTTTGT 59.816 40.000 0.00 0.00 35.63 2.83
3562 4446 3.878778 ACTCAACAGGTGAAGATATGGC 58.121 45.455 0.00 0.00 35.22 4.40
3563 4447 5.104941 TGGTACTCAACAGGTGAAGATATGG 60.105 44.000 0.00 0.00 35.22 2.74
3583 4467 3.131400 GGCAAACCTGAGTTGTTTTGGTA 59.869 43.478 0.00 0.00 35.97 3.25
3627 4513 1.280457 AAAGACGAAGCCCCTCTCAT 58.720 50.000 0.00 0.00 0.00 2.90
3726 4618 6.238484 GCTAATCTGTAATCCATGTGTTCCAC 60.238 42.308 0.00 0.00 34.56 4.02
3727 4619 5.822519 GCTAATCTGTAATCCATGTGTTCCA 59.177 40.000 0.00 0.00 0.00 3.53
3728 4620 5.822519 TGCTAATCTGTAATCCATGTGTTCC 59.177 40.000 0.00 0.00 0.00 3.62
3729 4621 6.540189 AGTGCTAATCTGTAATCCATGTGTTC 59.460 38.462 0.00 0.00 0.00 3.18
3754 4646 7.771826 AGTTTGGTCTGTGCTACTTTAAAAGTA 59.228 33.333 0.00 0.00 42.81 2.24
3782 6355 4.445385 GTGCACTTGCTACCTTCATTTTTG 59.555 41.667 10.32 0.00 42.66 2.44
3855 6452 8.996651 TCAACTCATGTATATCTAACTCCTCA 57.003 34.615 0.00 0.00 0.00 3.86
3900 6559 4.584638 TTCAGCTGGCCTAGGAAAATAA 57.415 40.909 14.75 0.00 0.00 1.40
3908 6567 2.237393 GACAGATTCAGCTGGCCTAG 57.763 55.000 15.13 4.39 37.99 3.02
3941 6600 1.233019 CAAGGTCATGATCGGGATGC 58.767 55.000 0.00 0.00 0.00 3.91
3947 6606 3.525537 AGTAAGCACAAGGTCATGATCG 58.474 45.455 0.00 0.00 0.00 3.69
4131 6806 6.586868 TTGAAATGTTTGCTGTGAAATCAC 57.413 33.333 6.60 6.60 46.59 3.06
4139 6814 8.947055 ACTTAAGAAATTGAAATGTTTGCTGT 57.053 26.923 10.09 0.00 0.00 4.40
4157 6832 9.998106 AAACTATAAGCTTTCAGTGACTTAAGA 57.002 29.630 10.09 0.00 0.00 2.10
4184 6859 9.863845 TGTGAACGTGTTTCTCTTATATGATTA 57.136 29.630 0.00 0.00 34.97 1.75
4187 6862 8.596271 TTTGTGAACGTGTTTCTCTTATATGA 57.404 30.769 0.00 0.00 34.97 2.15
4188 6863 9.658475 TTTTTGTGAACGTGTTTCTCTTATATG 57.342 29.630 0.00 0.00 34.97 1.78
4211 6886 4.219507 TGTGTATTCGTGCATGGGAATTTT 59.780 37.500 5.98 0.00 34.82 1.82
4237 7286 8.709308 ACACATGCTAGAAATTCCTAGATACTT 58.291 33.333 2.40 0.00 38.68 2.24
4239 7288 8.894768 AACACATGCTAGAAATTCCTAGATAC 57.105 34.615 2.40 0.00 38.68 2.24
4290 7339 5.353394 TGGTTCAACTTACTTGTGAGACT 57.647 39.130 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.