Multiple sequence alignment - TraesCS3D01G453200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G453200 chr3D 100.000 3709 0 0 1 3709 560330852 560334560 0.000000e+00 6850.0
1 TraesCS3D01G453200 chr3D 87.140 1353 122 26 220 1543 560477727 560479056 0.000000e+00 1487.0
2 TraesCS3D01G453200 chr3D 83.251 1421 176 23 237 1598 560235163 560233746 0.000000e+00 1249.0
3 TraesCS3D01G453200 chr3D 84.637 716 74 20 2154 2855 560479168 560479861 0.000000e+00 680.0
4 TraesCS3D01G453200 chr3D 86.947 452 47 11 2273 2717 560197550 560197104 7.150000e-137 497.0
5 TraesCS3D01G453200 chr3D 84.221 488 67 9 2240 2720 560285223 560284739 2.020000e-127 466.0
6 TraesCS3D01G453200 chr3D 85.214 257 30 6 1360 1609 560784652 560784397 1.320000e-64 257.0
7 TraesCS3D01G453200 chr3D 81.500 200 23 8 3332 3528 560754904 560755092 6.420000e-33 152.0
8 TraesCS3D01G453200 chr3D 85.156 128 10 3 3394 3513 560333841 560333967 5.030000e-24 122.0
9 TraesCS3D01G453200 chr3D 85.156 128 10 3 2990 3116 560334245 560334364 5.030000e-24 122.0
10 TraesCS3D01G453200 chr3D 100.000 30 0 0 3332 3361 560232953 560232924 5.170000e-04 56.5
11 TraesCS3D01G453200 chr3D 100.000 30 0 0 3332 3361 560267325 560267296 5.170000e-04 56.5
12 TraesCS3D01G453200 chr3B 93.119 1584 69 9 213 1778 744590514 744592075 0.000000e+00 2285.0
13 TraesCS3D01G453200 chr3B 92.929 1584 68 10 213 1778 746856444 746854887 0.000000e+00 2265.0
14 TraesCS3D01G453200 chr3B 93.970 879 27 4 1871 2728 744592077 744592950 0.000000e+00 1306.0
15 TraesCS3D01G453200 chr3B 84.199 1386 160 32 269 1608 745203414 745202042 0.000000e+00 1291.0
16 TraesCS3D01G453200 chr3B 93.288 879 33 4 1871 2728 746854885 746854012 0.000000e+00 1273.0
17 TraesCS3D01G453200 chr3B 86.029 1088 130 9 233 1301 744419916 744418832 0.000000e+00 1147.0
18 TraesCS3D01G453200 chr3B 85.601 1132 112 22 212 1296 745474961 745473834 0.000000e+00 1140.0
19 TraesCS3D01G453200 chr3B 85.662 1088 134 9 233 1301 747492984 747494068 0.000000e+00 1125.0
20 TraesCS3D01G453200 chr3B 88.876 854 71 6 713 1543 746793772 746792920 0.000000e+00 1029.0
21 TraesCS3D01G453200 chr3B 85.794 718 78 17 2161 2867 746792901 746792197 0.000000e+00 739.0
22 TraesCS3D01G453200 chr3B 94.545 330 17 1 2988 3316 744593198 744593527 3.300000e-140 508.0
23 TraesCS3D01G453200 chr3B 85.934 455 53 9 2273 2720 744339123 744338673 3.350000e-130 475.0
24 TraesCS3D01G453200 chr3B 92.788 208 14 1 2781 2987 746854008 746853801 2.170000e-77 300.0
25 TraesCS3D01G453200 chr3B 93.229 192 11 2 2988 3177 746853765 746853574 7.840000e-72 281.0
26 TraesCS3D01G453200 chr3B 90.521 211 19 1 2778 2987 744592952 744593162 1.010000e-70 278.0
27 TraesCS3D01G453200 chr3B 83.740 246 32 3 1348 1587 744228112 744227869 3.730000e-55 226.0
28 TraesCS3D01G453200 chr3B 86.473 207 15 7 3330 3528 746853827 746853626 8.070000e-52 215.0
29 TraesCS3D01G453200 chr3B 89.017 173 14 1 3327 3494 744593133 744593305 3.750000e-50 209.0
30 TraesCS3D01G453200 chr3B 85.792 183 14 6 3346 3528 746853465 746853295 2.280000e-42 183.0
31 TraesCS3D01G453200 chr3B 94.737 114 6 0 3203 3316 746853577 746853464 1.060000e-40 178.0
32 TraesCS3D01G453200 chr3B 98.969 97 1 0 100 196 744590428 744590524 1.370000e-39 174.0
33 TraesCS3D01G453200 chr3B 97.938 97 2 0 100 196 746856530 746856434 6.370000e-38 169.0
34 TraesCS3D01G453200 chr3B 84.076 157 11 6 3015 3165 746853404 746853256 4.990000e-29 139.0
35 TraesCS3D01G453200 chr3B 80.226 177 33 2 3529 3704 819957913 819958088 8.360000e-27 132.0
36 TraesCS3D01G453200 chr3B 80.916 131 15 5 3041 3165 744593583 744593709 1.100000e-15 95.3
37 TraesCS3D01G453200 chr3B 75.000 196 26 13 3332 3510 746849104 746849293 6.650000e-08 69.4
38 TraesCS3D01G453200 chr3B 74.312 218 29 17 3332 3530 744597044 744596835 2.390000e-07 67.6
39 TraesCS3D01G453200 chr3B 83.333 72 10 2 3044 3113 746849222 746849293 8.600000e-07 65.8
40 TraesCS3D01G453200 chr3B 93.023 43 2 1 3078 3119 744596890 744596848 1.110000e-05 62.1
41 TraesCS3D01G453200 chr3B 79.775 89 13 2 3332 3418 747332601 747332686 4.000000e-05 60.2
42 TraesCS3D01G453200 chr3A 85.846 1088 132 9 233 1301 629086952 629088036 0.000000e+00 1136.0
43 TraesCS3D01G453200 chr3A 85.754 1088 133 9 233 1301 696333013 696331929 0.000000e+00 1131.0
44 TraesCS3D01G453200 chr3A 80.427 843 109 28 800 1588 629019536 629018696 3.190000e-165 592.0
45 TraesCS3D01G453200 chr3A 79.763 845 112 32 800 1588 696270292 696269451 3.240000e-155 558.0
46 TraesCS3D01G453200 chr3A 87.168 452 47 9 2273 2717 696288811 696288364 1.540000e-138 503.0
47 TraesCS3D01G453200 chr3A 84.696 477 61 11 2239 2707 629057933 629058405 2.020000e-127 466.0
48 TraesCS3D01G453200 chr3A 87.946 224 26 1 1385 1608 696476928 696476706 2.840000e-66 263.0
49 TraesCS3D01G453200 chr3A 83.562 73 7 5 3332 3402 696342478 696342409 3.090000e-06 63.9
50 TraesCS3D01G453200 chr1B 92.135 178 14 0 3532 3709 289091872 289091695 6.150000e-63 252.0
51 TraesCS3D01G453200 chr6B 88.202 178 19 2 3528 3704 664746294 664746470 1.040000e-50 211.0
52 TraesCS3D01G453200 chr6B 87.640 178 22 0 3532 3709 664747883 664747706 1.350000e-49 207.0
53 TraesCS3D01G453200 chr2D 86.264 182 22 2 3528 3709 526122614 526122792 1.050000e-45 195.0
54 TraesCS3D01G453200 chr5A 79.812 213 40 3 3498 3709 41436916 41436706 6.420000e-33 152.0
55 TraesCS3D01G453200 chr4D 81.503 173 32 0 3529 3701 36855751 36855923 3.860000e-30 143.0
56 TraesCS3D01G453200 chr6D 80.000 185 35 2 3526 3709 372178130 372178313 6.460000e-28 135.0
57 TraesCS3D01G453200 chr1A 94.253 87 5 0 1769 1855 543124412 543124498 2.320000e-27 134.0
58 TraesCS3D01G453200 chr1A 94.444 36 1 1 1865 1899 547376794 547376829 2.000000e-03 54.7
59 TraesCS3D01G453200 chr7D 79.570 186 36 2 3525 3709 84325798 84325614 8.360000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G453200 chr3D 560330852 560334560 3708 False 2364.666667 6850 90.104000 1 3709 3 chr3D.!!$F2 3708
1 TraesCS3D01G453200 chr3D 560477727 560479861 2134 False 1083.500000 1487 85.888500 220 2855 2 chr3D.!!$F3 2635
2 TraesCS3D01G453200 chr3D 560232924 560235163 2239 True 652.750000 1249 91.625500 237 3361 2 chr3D.!!$R5 3124
3 TraesCS3D01G453200 chr3B 745202042 745203414 1372 True 1291.000000 1291 84.199000 269 1608 1 chr3B.!!$R4 1339
4 TraesCS3D01G453200 chr3B 744418832 744419916 1084 True 1147.000000 1147 86.029000 233 1301 1 chr3B.!!$R3 1068
5 TraesCS3D01G453200 chr3B 745473834 745474961 1127 True 1140.000000 1140 85.601000 212 1296 1 chr3B.!!$R5 1084
6 TraesCS3D01G453200 chr3B 747492984 747494068 1084 False 1125.000000 1125 85.662000 233 1301 1 chr3B.!!$F2 1068
7 TraesCS3D01G453200 chr3B 746792197 746793772 1575 True 884.000000 1029 87.335000 713 2867 2 chr3B.!!$R7 2154
8 TraesCS3D01G453200 chr3B 744590428 744593709 3281 False 693.614286 2285 91.579571 100 3494 7 chr3B.!!$F4 3394
9 TraesCS3D01G453200 chr3B 746853256 746856530 3274 True 555.888889 2265 91.250000 100 3528 9 chr3B.!!$R8 3428
10 TraesCS3D01G453200 chr3A 629086952 629088036 1084 False 1136.000000 1136 85.846000 233 1301 1 chr3A.!!$F2 1068
11 TraesCS3D01G453200 chr3A 696331929 696333013 1084 True 1131.000000 1131 85.754000 233 1301 1 chr3A.!!$R4 1068
12 TraesCS3D01G453200 chr3A 629018696 629019536 840 True 592.000000 592 80.427000 800 1588 1 chr3A.!!$R1 788
13 TraesCS3D01G453200 chr3A 696269451 696270292 841 True 558.000000 558 79.763000 800 1588 1 chr3A.!!$R2 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.322975 CACACCCACTCCTCCAGAAG 59.677 60.0 0.00 0.00 0.00 2.85 F
1789 1929 0.594602 TTACAGGAGTCGACCGTGTG 59.405 55.0 27.57 17.67 34.73 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 1943 0.249120 TTGCCTGTATGTAGCGCACT 59.751 50.0 11.47 0.0 0.00 4.40 R
3671 3931 0.032615 TGGGCCCAACTTGTCAGTTT 60.033 50.0 26.33 0.0 40.66 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.897575 ACTGATGTTCTAGTTGAAACATCTC 57.102 36.000 24.32 10.56 40.15 2.75
26 27 7.675062 ACTGATGTTCTAGTTGAAACATCTCT 58.325 34.615 24.32 13.38 40.15 3.10
27 28 7.816995 ACTGATGTTCTAGTTGAAACATCTCTC 59.183 37.037 24.32 9.81 40.15 3.20
28 29 7.901029 TGATGTTCTAGTTGAAACATCTCTCT 58.099 34.615 24.32 1.67 40.15 3.10
29 30 7.816513 TGATGTTCTAGTTGAAACATCTCTCTG 59.183 37.037 24.32 0.00 40.15 3.35
30 31 6.459066 TGTTCTAGTTGAAACATCTCTCTGG 58.541 40.000 0.00 0.00 36.30 3.86
31 32 5.667539 TCTAGTTGAAACATCTCTCTGGG 57.332 43.478 0.00 0.00 0.00 4.45
32 33 5.333581 TCTAGTTGAAACATCTCTCTGGGA 58.666 41.667 0.00 0.00 0.00 4.37
33 34 4.982241 AGTTGAAACATCTCTCTGGGAA 57.018 40.909 0.00 0.00 0.00 3.97
34 35 5.310409 AGTTGAAACATCTCTCTGGGAAA 57.690 39.130 0.00 0.00 0.00 3.13
35 36 5.066593 AGTTGAAACATCTCTCTGGGAAAC 58.933 41.667 0.00 0.00 0.00 2.78
36 37 4.705110 TGAAACATCTCTCTGGGAAACA 57.295 40.909 0.00 0.00 0.00 2.83
37 38 5.047566 TGAAACATCTCTCTGGGAAACAA 57.952 39.130 0.00 0.00 0.00 2.83
38 39 5.445069 TGAAACATCTCTCTGGGAAACAAA 58.555 37.500 0.00 0.00 0.00 2.83
39 40 6.070656 TGAAACATCTCTCTGGGAAACAAAT 58.929 36.000 0.00 0.00 0.00 2.32
40 41 6.550854 TGAAACATCTCTCTGGGAAACAAATT 59.449 34.615 0.00 0.00 0.00 1.82
41 42 6.983906 AACATCTCTCTGGGAAACAAATTT 57.016 33.333 0.00 0.00 0.00 1.82
42 43 6.983906 ACATCTCTCTGGGAAACAAATTTT 57.016 33.333 0.00 0.00 0.00 1.82
43 44 8.477419 AACATCTCTCTGGGAAACAAATTTTA 57.523 30.769 0.00 0.00 0.00 1.52
44 45 8.655935 ACATCTCTCTGGGAAACAAATTTTAT 57.344 30.769 0.00 0.00 0.00 1.40
45 46 9.093458 ACATCTCTCTGGGAAACAAATTTTATT 57.907 29.630 0.00 0.00 0.00 1.40
46 47 9.933723 CATCTCTCTGGGAAACAAATTTTATTT 57.066 29.630 0.00 0.00 0.00 1.40
95 96 6.809630 AAACAATAAACTTGAGAGAGAGCC 57.190 37.500 0.00 0.00 0.00 4.70
96 97 5.489792 ACAATAAACTTGAGAGAGAGCCA 57.510 39.130 0.00 0.00 0.00 4.75
97 98 5.869579 ACAATAAACTTGAGAGAGAGCCAA 58.130 37.500 0.00 0.00 0.00 4.52
98 99 6.479884 ACAATAAACTTGAGAGAGAGCCAAT 58.520 36.000 0.00 0.00 0.00 3.16
176 177 2.215465 TAGCAAATCACGACGGCGGA 62.215 55.000 18.49 10.42 43.17 5.54
189 190 4.250305 GCGGACACCACACCCACT 62.250 66.667 0.00 0.00 0.00 4.00
190 191 2.030562 CGGACACCACACCCACTC 59.969 66.667 0.00 0.00 0.00 3.51
191 192 2.430367 GGACACCACACCCACTCC 59.570 66.667 0.00 0.00 0.00 3.85
192 193 2.147387 GGACACCACACCCACTCCT 61.147 63.158 0.00 0.00 0.00 3.69
193 194 1.371558 GACACCACACCCACTCCTC 59.628 63.158 0.00 0.00 0.00 3.71
194 195 2.113243 GACACCACACCCACTCCTCC 62.113 65.000 0.00 0.00 0.00 4.30
195 196 2.146724 CACCACACCCACTCCTCCA 61.147 63.158 0.00 0.00 0.00 3.86
196 197 1.843376 ACCACACCCACTCCTCCAG 60.843 63.158 0.00 0.00 0.00 3.86
197 198 1.536418 CCACACCCACTCCTCCAGA 60.536 63.158 0.00 0.00 0.00 3.86
198 199 1.127567 CCACACCCACTCCTCCAGAA 61.128 60.000 0.00 0.00 0.00 3.02
199 200 0.322975 CACACCCACTCCTCCAGAAG 59.677 60.000 0.00 0.00 0.00 2.85
231 232 0.995024 CCACTCTTCCATTCCCCACT 59.005 55.000 0.00 0.00 0.00 4.00
1059 1112 2.434359 GCCCCGTCCTTGAGTTCG 60.434 66.667 0.00 0.00 0.00 3.95
1060 1113 2.434359 CCCCGTCCTTGAGTTCGC 60.434 66.667 0.00 0.00 0.00 4.70
1152 1225 0.677288 AGAACATCGACGTGGTGGAA 59.323 50.000 0.00 0.00 0.00 3.53
1160 1233 3.636231 CGTGGTGGAAGCCCCTCA 61.636 66.667 0.00 0.00 35.38 3.86
1246 1337 4.946157 GCTCTTTCAGAATCAAGATTGGGA 59.054 41.667 0.00 0.00 0.00 4.37
1257 1348 4.272489 TCAAGATTGGGAATGCACCTAAG 58.728 43.478 0.00 0.00 34.15 2.18
1363 1487 8.405531 GTGTCAGTTAATAATGCCAATGTATGT 58.594 33.333 0.00 0.00 0.00 2.29
1411 1542 2.198150 TTGCAGGCTGGGAGCAAA 59.802 55.556 17.64 0.00 44.75 3.68
1611 1747 8.083828 AGTGTCCATGTTATCTAGAATGAACT 57.916 34.615 13.57 7.62 0.00 3.01
1614 1750 7.981789 TGTCCATGTTATCTAGAATGAACTGAC 59.018 37.037 13.57 15.02 0.00 3.51
1616 1752 7.125659 TCCATGTTATCTAGAATGAACTGACCA 59.874 37.037 13.57 0.00 0.00 4.02
1617 1753 7.225538 CCATGTTATCTAGAATGAACTGACCAC 59.774 40.741 13.57 0.00 0.00 4.16
1620 1756 7.178451 TGTTATCTAGAATGAACTGACCACAGA 59.822 37.037 13.57 0.00 46.03 3.41
1621 1757 6.805016 ATCTAGAATGAACTGACCACAGAT 57.195 37.500 0.00 0.00 46.03 2.90
1622 1758 7.904558 ATCTAGAATGAACTGACCACAGATA 57.095 36.000 0.00 0.00 46.03 1.98
1624 1760 8.996651 TCTAGAATGAACTGACCACAGATATA 57.003 34.615 0.00 0.00 46.03 0.86
1625 1761 9.072375 TCTAGAATGAACTGACCACAGATATAG 57.928 37.037 0.00 0.00 46.03 1.31
1626 1762 7.904558 AGAATGAACTGACCACAGATATAGA 57.095 36.000 0.00 0.00 46.03 1.98
1628 1764 8.762645 AGAATGAACTGACCACAGATATAGAAA 58.237 33.333 0.00 0.00 46.03 2.52
1660 1796 1.421268 CCTGCTATCATGGGTTGGCTA 59.579 52.381 0.00 0.00 0.00 3.93
1676 1812 1.631072 CTACGGCGTCGCAAAGATG 59.369 57.895 19.21 3.57 40.63 2.90
1721 1861 6.663944 ACAGAGTTTGAAACTGTAGTTGTC 57.336 37.500 16.25 0.00 43.03 3.18
1733 1873 9.485206 GAAACTGTAGTTGTCATTTCCTTAGTA 57.515 33.333 0.00 0.00 38.44 1.82
1738 1878 9.653287 TGTAGTTGTCATTTCCTTAGTATTCAG 57.347 33.333 0.00 0.00 0.00 3.02
1746 1886 8.768397 TCATTTCCTTAGTATTCAGTACATGGT 58.232 33.333 0.00 0.00 35.67 3.55
1769 1909 7.854934 GTACATATAGAGCTTTGTACCGAAG 57.145 40.000 10.97 0.00 38.85 3.79
1770 1910 6.466885 ACATATAGAGCTTTGTACCGAAGT 57.533 37.500 7.62 0.00 0.00 3.01
1771 1911 6.875076 ACATATAGAGCTTTGTACCGAAGTT 58.125 36.000 7.62 2.52 0.00 2.66
1772 1912 8.004087 ACATATAGAGCTTTGTACCGAAGTTA 57.996 34.615 7.62 1.27 0.00 2.24
1773 1913 7.919621 ACATATAGAGCTTTGTACCGAAGTTAC 59.080 37.037 7.62 0.00 0.00 2.50
1774 1914 4.595762 AGAGCTTTGTACCGAAGTTACA 57.404 40.909 7.62 0.00 0.00 2.41
1775 1915 4.557205 AGAGCTTTGTACCGAAGTTACAG 58.443 43.478 7.62 0.00 0.00 2.74
1776 1916 3.660865 AGCTTTGTACCGAAGTTACAGG 58.339 45.455 7.62 0.00 0.00 4.00
1777 1917 3.322828 AGCTTTGTACCGAAGTTACAGGA 59.677 43.478 7.62 0.00 0.00 3.86
1778 1918 3.678548 GCTTTGTACCGAAGTTACAGGAG 59.321 47.826 7.62 0.00 0.00 3.69
1779 1919 4.798593 GCTTTGTACCGAAGTTACAGGAGT 60.799 45.833 7.62 0.00 0.00 3.85
1780 1920 4.510038 TTGTACCGAAGTTACAGGAGTC 57.490 45.455 0.00 0.00 0.00 3.36
1781 1921 2.485426 TGTACCGAAGTTACAGGAGTCG 59.515 50.000 0.00 0.00 0.00 4.18
1782 1922 1.901591 ACCGAAGTTACAGGAGTCGA 58.098 50.000 0.00 0.00 33.63 4.20
1783 1923 1.538950 ACCGAAGTTACAGGAGTCGAC 59.461 52.381 7.70 7.70 33.63 4.20
1784 1924 1.135460 CCGAAGTTACAGGAGTCGACC 60.135 57.143 13.01 3.55 33.63 4.79
1785 1925 1.465354 CGAAGTTACAGGAGTCGACCG 60.465 57.143 13.01 0.00 33.63 4.79
1786 1926 1.538950 GAAGTTACAGGAGTCGACCGT 59.461 52.381 13.01 7.33 34.73 4.83
1787 1927 0.879765 AGTTACAGGAGTCGACCGTG 59.120 55.000 13.01 16.74 34.73 4.94
1788 1928 0.595095 GTTACAGGAGTCGACCGTGT 59.405 55.000 24.97 24.97 34.73 4.49
1789 1929 0.594602 TTACAGGAGTCGACCGTGTG 59.405 55.000 27.57 17.67 34.73 3.82
1790 1930 1.859427 TACAGGAGTCGACCGTGTGC 61.859 60.000 27.57 12.44 34.73 4.57
1791 1931 2.910479 AGGAGTCGACCGTGTGCA 60.910 61.111 13.01 0.00 34.73 4.57
1792 1932 2.733593 GGAGTCGACCGTGTGCAC 60.734 66.667 13.01 10.75 0.00 4.57
1809 1949 1.226323 ACGATCGTGAGTAGTGCGC 60.226 57.895 22.06 0.00 0.00 6.09
1832 1972 3.412386 ACATACAGGCAAAGACCAAGTC 58.588 45.455 0.00 0.00 0.00 3.01
1915 2055 2.291540 ACACATGGATTCGGGGAACAAT 60.292 45.455 0.00 0.00 0.00 2.71
1916 2056 2.099592 CACATGGATTCGGGGAACAATG 59.900 50.000 0.00 0.00 0.00 2.82
2002 2162 1.454572 ATCAGCCACGCAGCAAAACA 61.455 50.000 0.00 0.00 34.23 2.83
2114 2275 4.657039 TGGAGGGTTCAAAGTAAGTGTAGT 59.343 41.667 0.00 0.00 0.00 2.73
2131 2292 5.701290 AGTGTAGTCTGTCTGGTAATTTTGC 59.299 40.000 0.00 0.00 0.00 3.68
2158 2319 6.247229 ACCAGTGTCCATGTTATATAGCAA 57.753 37.500 3.20 0.00 0.00 3.91
2262 2423 7.070074 TCCTCATAGAAAAGATCCCTGAACTAC 59.930 40.741 0.00 0.00 0.00 2.73
2319 2486 1.182667 CATACGTGAGGAGTCCACCA 58.817 55.000 12.86 6.04 0.00 4.17
2386 2553 2.214347 CATCCTGCAGAGCATCAAGAG 58.786 52.381 17.39 0.00 38.13 2.85
2492 2663 3.605664 GTGGTTGTGGTGGCCAGC 61.606 66.667 28.15 28.15 32.34 4.85
2735 2927 2.366916 AGCTCTTGTACAAGACTGCTGT 59.633 45.455 34.20 20.98 43.14 4.40
2740 2932 3.396260 TGTACAAGACTGCTGTTACCC 57.604 47.619 0.00 0.00 0.00 3.69
2756 2948 4.589798 TGTTACCCAGCTAGACTTTGTGTA 59.410 41.667 0.00 0.00 0.00 2.90
2757 2949 5.070714 TGTTACCCAGCTAGACTTTGTGTAA 59.929 40.000 0.00 0.00 0.00 2.41
2759 2951 4.642429 ACCCAGCTAGACTTTGTGTAAAG 58.358 43.478 0.00 0.00 46.89 1.85
2773 2965 7.639113 TTTGTGTAAAGTGAAGGATCTTTGT 57.361 32.000 0.00 0.00 35.79 2.83
2776 2968 5.008613 GTGTAAAGTGAAGGATCTTTGTGCA 59.991 40.000 0.00 0.00 35.79 4.57
2778 2970 4.843220 AAGTGAAGGATCTTTGTGCAAG 57.157 40.909 0.00 0.00 0.00 4.01
2785 2977 3.010420 GGATCTTTGTGCAAGGACCTAC 58.990 50.000 0.00 0.00 32.64 3.18
2815 3007 0.310543 GTGGAATGCGTGTTTCTGCA 59.689 50.000 0.00 0.00 46.51 4.41
2859 3051 1.368641 GCTGGACGCATAACACATCA 58.631 50.000 0.00 0.00 38.92 3.07
2886 3108 9.444600 AATTAGAGCGTCTTCACCTTTATTTTA 57.555 29.630 0.00 0.00 0.00 1.52
2929 3152 8.668510 ATCTTTGTGGTATTTATCTAGTGCTG 57.331 34.615 0.00 0.00 0.00 4.41
2948 3171 3.005684 GCTGATTTTTGTGTGGGATGTGA 59.994 43.478 0.00 0.00 0.00 3.58
2978 3201 8.758829 TCTAGTGCTAATGATCTTTCTGGTTTA 58.241 33.333 0.00 0.00 0.00 2.01
2981 3204 7.225538 AGTGCTAATGATCTTTCTGGTTTATCG 59.774 37.037 0.00 0.00 0.00 2.92
3137 3396 8.668510 AGTATTACTGATTACTGCAATTGGAG 57.331 34.615 23.77 23.77 39.57 3.86
3168 3428 4.041740 GGAAACCTTCACAAAACAGGAC 57.958 45.455 0.00 0.00 0.00 3.85
3207 3467 7.166638 CAGAAATGTAGTTCTACTAGCATCACG 59.833 40.741 10.65 0.00 35.63 4.35
3227 3487 2.695359 GAGTTAAGCATGGAACCGTCA 58.305 47.619 0.00 0.00 0.00 4.35
3229 3489 4.439057 GAGTTAAGCATGGAACCGTCATA 58.561 43.478 0.00 0.00 0.00 2.15
3232 3492 5.527582 AGTTAAGCATGGAACCGTCATATTC 59.472 40.000 0.00 0.00 0.00 1.75
3318 3578 9.018716 TGCACTACGAATTGCAATTTTATTATG 57.981 29.630 24.81 18.38 45.65 1.90
3319 3579 8.479280 GCACTACGAATTGCAATTTTATTATGG 58.521 33.333 24.81 12.13 38.68 2.74
3320 3580 9.515020 CACTACGAATTGCAATTTTATTATGGT 57.485 29.630 24.81 11.26 0.00 3.55
3321 3581 9.730420 ACTACGAATTGCAATTTTATTATGGTC 57.270 29.630 24.81 8.08 0.00 4.02
3322 3582 9.950680 CTACGAATTGCAATTTTATTATGGTCT 57.049 29.630 24.81 0.00 0.00 3.85
3324 3584 9.651913 ACGAATTGCAATTTTATTATGGTCTTT 57.348 25.926 24.81 0.00 0.00 2.52
3328 3588 9.603921 ATTGCAATTTTATTATGGTCTTTCTGG 57.396 29.630 5.99 0.00 0.00 3.86
3329 3589 8.133024 TGCAATTTTATTATGGTCTTTCTGGT 57.867 30.769 0.00 0.00 0.00 4.00
3330 3590 9.249053 TGCAATTTTATTATGGTCTTTCTGGTA 57.751 29.630 0.00 0.00 0.00 3.25
3335 3595 9.762381 TTTTATTATGGTCTTTCTGGTAATGGT 57.238 29.630 0.00 0.00 0.00 3.55
3336 3596 8.974060 TTATTATGGTCTTTCTGGTAATGGTC 57.026 34.615 0.00 0.00 0.00 4.02
3337 3597 6.636454 TTATGGTCTTTCTGGTAATGGTCT 57.364 37.500 0.00 0.00 0.00 3.85
3338 3598 4.993705 TGGTCTTTCTGGTAATGGTCTT 57.006 40.909 0.00 0.00 0.00 3.01
3339 3599 5.319043 TGGTCTTTCTGGTAATGGTCTTT 57.681 39.130 0.00 0.00 0.00 2.52
3340 3600 5.313712 TGGTCTTTCTGGTAATGGTCTTTC 58.686 41.667 0.00 0.00 0.00 2.62
3341 3601 5.073144 TGGTCTTTCTGGTAATGGTCTTTCT 59.927 40.000 0.00 0.00 0.00 2.52
3342 3602 5.412904 GGTCTTTCTGGTAATGGTCTTTCTG 59.587 44.000 0.00 0.00 0.00 3.02
3343 3603 5.412904 GTCTTTCTGGTAATGGTCTTTCTGG 59.587 44.000 0.00 0.00 0.00 3.86
3344 3604 4.993705 TTCTGGTAATGGTCTTTCTGGT 57.006 40.909 0.00 0.00 0.00 4.00
3361 3621 4.211125 TCTGGTTTGTCCAACTGCAATTA 58.789 39.130 0.00 0.00 46.59 1.40
3362 3622 4.646945 TCTGGTTTGTCCAACTGCAATTAA 59.353 37.500 0.00 0.00 46.59 1.40
3376 3636 7.350110 ACTGCAATTAAAATATGTTGTGCAC 57.650 32.000 10.75 10.75 35.93 4.57
3390 3650 2.364632 TGTGCACTTGCTGTTGTTAGT 58.635 42.857 19.41 0.00 42.66 2.24
3391 3651 2.097304 TGTGCACTTGCTGTTGTTAGTG 59.903 45.455 19.41 0.00 42.66 2.74
3392 3652 2.097466 GTGCACTTGCTGTTGTTAGTGT 59.903 45.455 10.32 0.00 40.02 3.55
3399 3659 5.532406 ACTTGCTGTTGTTAGTGTCATGAAT 59.468 36.000 0.00 0.00 0.00 2.57
3406 3666 9.764870 CTGTTGTTAGTGTCATGAATTAATCTG 57.235 33.333 0.00 0.00 0.00 2.90
3407 3667 8.236586 TGTTGTTAGTGTCATGAATTAATCTGC 58.763 33.333 0.00 0.00 0.00 4.26
3408 3668 8.454106 GTTGTTAGTGTCATGAATTAATCTGCT 58.546 33.333 0.00 0.00 0.00 4.24
3409 3669 9.665719 TTGTTAGTGTCATGAATTAATCTGCTA 57.334 29.630 0.00 0.00 0.00 3.49
3410 3670 9.836864 TGTTAGTGTCATGAATTAATCTGCTAT 57.163 29.630 0.00 0.00 0.00 2.97
3412 3672 7.976135 AGTGTCATGAATTAATCTGCTATCC 57.024 36.000 0.00 0.00 0.00 2.59
3413 3673 7.512130 AGTGTCATGAATTAATCTGCTATCCA 58.488 34.615 0.00 0.00 0.00 3.41
3414 3674 8.162085 AGTGTCATGAATTAATCTGCTATCCAT 58.838 33.333 0.00 0.00 0.00 3.41
3415 3675 8.790718 GTGTCATGAATTAATCTGCTATCCATT 58.209 33.333 0.00 0.00 0.00 3.16
3436 3696 2.576615 AGGTTGGTCTCAGCTCAAAAC 58.423 47.619 0.00 0.00 0.00 2.43
3437 3697 2.092429 AGGTTGGTCTCAGCTCAAAACA 60.092 45.455 0.00 0.00 0.00 2.83
3438 3698 2.291741 GGTTGGTCTCAGCTCAAAACAG 59.708 50.000 0.00 0.00 0.00 3.16
3506 3766 7.302350 ACAAACTTTTACATGGTTCTTTTGC 57.698 32.000 0.00 0.00 0.00 3.68
3529 3789 9.719355 TTGCAAAGTACTTCATTACTGATTAGA 57.281 29.630 8.95 0.00 32.39 2.10
3531 3791 9.372369 GCAAAGTACTTCATTACTGATTAGAGT 57.628 33.333 8.95 0.00 32.39 3.24
3548 3808 9.016438 TGATTAGAGTTATTTACCCAAAACCAC 57.984 33.333 0.00 0.00 0.00 4.16
3549 3809 7.764141 TTAGAGTTATTTACCCAAAACCACC 57.236 36.000 0.00 0.00 0.00 4.61
3550 3810 5.707495 AGAGTTATTTACCCAAAACCACCA 58.293 37.500 0.00 0.00 0.00 4.17
3551 3811 5.537295 AGAGTTATTTACCCAAAACCACCAC 59.463 40.000 0.00 0.00 0.00 4.16
3553 3813 5.303333 AGTTATTTACCCAAAACCACCACAG 59.697 40.000 0.00 0.00 0.00 3.66
3555 3815 2.830651 TACCCAAAACCACCACAGTT 57.169 45.000 0.00 0.00 0.00 3.16
3557 3817 3.103080 ACCCAAAACCACCACAGTTTA 57.897 42.857 0.00 0.00 36.44 2.01
3558 3818 3.028130 ACCCAAAACCACCACAGTTTAG 58.972 45.455 0.00 0.00 36.44 1.85
3559 3819 3.028130 CCCAAAACCACCACAGTTTAGT 58.972 45.455 0.00 0.00 36.44 2.24
3561 3821 3.951680 CCAAAACCACCACAGTTTAGTCT 59.048 43.478 0.00 0.00 36.44 3.24
3563 3823 5.238650 CCAAAACCACCACAGTTTAGTCTAG 59.761 44.000 0.00 0.00 36.44 2.43
3564 3824 4.618920 AACCACCACAGTTTAGTCTAGG 57.381 45.455 0.00 0.00 0.00 3.02
3565 3825 2.904434 ACCACCACAGTTTAGTCTAGGG 59.096 50.000 0.00 0.00 0.00 3.53
3566 3826 2.904434 CCACCACAGTTTAGTCTAGGGT 59.096 50.000 0.00 0.00 0.00 4.34
3567 3827 4.091549 CCACCACAGTTTAGTCTAGGGTA 58.908 47.826 0.00 0.00 0.00 3.69
3568 3828 4.159879 CCACCACAGTTTAGTCTAGGGTAG 59.840 50.000 0.00 0.00 0.00 3.18
3569 3829 3.768215 ACCACAGTTTAGTCTAGGGTAGC 59.232 47.826 0.00 0.00 0.00 3.58
3570 3830 3.767673 CCACAGTTTAGTCTAGGGTAGCA 59.232 47.826 0.00 0.00 0.00 3.49
3571 3831 4.222145 CCACAGTTTAGTCTAGGGTAGCAA 59.778 45.833 0.00 0.00 0.00 3.91
3572 3832 5.169295 CACAGTTTAGTCTAGGGTAGCAAC 58.831 45.833 0.00 0.00 0.00 4.17
3573 3833 5.047235 CACAGTTTAGTCTAGGGTAGCAACT 60.047 44.000 0.00 0.00 0.00 3.16
3574 3834 5.543020 ACAGTTTAGTCTAGGGTAGCAACTT 59.457 40.000 0.00 0.00 0.00 2.66
3575 3835 6.723052 ACAGTTTAGTCTAGGGTAGCAACTTA 59.277 38.462 0.00 0.00 0.00 2.24
3576 3836 7.093858 ACAGTTTAGTCTAGGGTAGCAACTTAG 60.094 40.741 0.00 0.00 0.00 2.18
3577 3837 6.952938 AGTTTAGTCTAGGGTAGCAACTTAGT 59.047 38.462 0.00 0.00 0.00 2.24
3578 3838 8.112183 AGTTTAGTCTAGGGTAGCAACTTAGTA 58.888 37.037 0.00 0.00 0.00 1.82
3579 3839 7.872113 TTAGTCTAGGGTAGCAACTTAGTAC 57.128 40.000 0.00 0.00 0.00 2.73
3580 3840 5.199723 AGTCTAGGGTAGCAACTTAGTACC 58.800 45.833 0.00 0.00 36.27 3.34
3581 3841 4.952335 GTCTAGGGTAGCAACTTAGTACCA 59.048 45.833 4.66 0.00 38.41 3.25
3582 3842 5.067544 GTCTAGGGTAGCAACTTAGTACCAG 59.932 48.000 4.66 0.00 38.41 4.00
3583 3843 4.057063 AGGGTAGCAACTTAGTACCAGA 57.943 45.455 4.66 0.00 38.41 3.86
3584 3844 4.621769 AGGGTAGCAACTTAGTACCAGAT 58.378 43.478 4.66 0.00 38.41 2.90
3585 3845 5.030820 AGGGTAGCAACTTAGTACCAGATT 58.969 41.667 4.66 0.00 38.41 2.40
3586 3846 5.128991 AGGGTAGCAACTTAGTACCAGATTC 59.871 44.000 4.66 0.00 38.41 2.52
3587 3847 5.358090 GGTAGCAACTTAGTACCAGATTCC 58.642 45.833 0.00 0.00 36.89 3.01
3588 3848 5.105064 GGTAGCAACTTAGTACCAGATTCCA 60.105 44.000 0.00 0.00 36.89 3.53
3589 3849 5.091261 AGCAACTTAGTACCAGATTCCAG 57.909 43.478 0.00 0.00 0.00 3.86
3590 3850 3.623510 GCAACTTAGTACCAGATTCCAGC 59.376 47.826 0.00 0.00 0.00 4.85
3591 3851 4.192317 CAACTTAGTACCAGATTCCAGCC 58.808 47.826 0.00 0.00 0.00 4.85
3592 3852 3.450904 ACTTAGTACCAGATTCCAGCCA 58.549 45.455 0.00 0.00 0.00 4.75
3593 3853 3.452627 ACTTAGTACCAGATTCCAGCCAG 59.547 47.826 0.00 0.00 0.00 4.85
3594 3854 1.207791 AGTACCAGATTCCAGCCAGG 58.792 55.000 0.00 0.00 39.47 4.45
3595 3855 0.181350 GTACCAGATTCCAGCCAGGG 59.819 60.000 0.00 0.00 38.24 4.45
3596 3856 1.635817 TACCAGATTCCAGCCAGGGC 61.636 60.000 0.97 0.97 42.33 5.19
3597 3857 2.679092 CAGATTCCAGCCAGGGCA 59.321 61.111 13.63 0.00 44.88 5.36
3598 3858 1.751927 CAGATTCCAGCCAGGGCAC 60.752 63.158 13.63 0.00 44.88 5.01
3599 3859 2.233566 AGATTCCAGCCAGGGCACA 61.234 57.895 13.63 0.00 44.88 4.57
3600 3860 1.304381 GATTCCAGCCAGGGCACAA 60.304 57.895 13.63 2.16 44.88 3.33
3601 3861 0.899717 GATTCCAGCCAGGGCACAAA 60.900 55.000 13.63 3.55 44.88 2.83
3602 3862 0.471591 ATTCCAGCCAGGGCACAAAA 60.472 50.000 13.63 1.75 44.88 2.44
3603 3863 0.689080 TTCCAGCCAGGGCACAAAAA 60.689 50.000 13.63 0.00 44.88 1.94
3618 3878 1.731093 AAAAACCACCGGAACTGCG 59.269 52.632 9.46 0.00 0.00 5.18
3619 3879 2.344521 AAAAACCACCGGAACTGCGC 62.345 55.000 9.46 0.00 0.00 6.09
3622 3882 4.077184 CCACCGGAACTGCGCCTA 62.077 66.667 9.46 0.00 0.00 3.93
3623 3883 2.047655 CACCGGAACTGCGCCTAA 60.048 61.111 9.46 0.00 0.00 2.69
3624 3884 2.047560 ACCGGAACTGCGCCTAAC 60.048 61.111 9.46 0.00 0.00 2.34
3625 3885 2.818274 CCGGAACTGCGCCTAACC 60.818 66.667 4.18 2.56 0.00 2.85
3626 3886 2.264794 CGGAACTGCGCCTAACCT 59.735 61.111 4.18 0.00 0.00 3.50
3627 3887 2.100631 CGGAACTGCGCCTAACCTG 61.101 63.158 4.18 0.00 0.00 4.00
3628 3888 1.003718 GGAACTGCGCCTAACCTGT 60.004 57.895 4.18 0.00 0.00 4.00
3629 3889 0.248289 GGAACTGCGCCTAACCTGTA 59.752 55.000 4.18 0.00 0.00 2.74
3630 3890 1.338389 GGAACTGCGCCTAACCTGTAA 60.338 52.381 4.18 0.00 0.00 2.41
3631 3891 1.730612 GAACTGCGCCTAACCTGTAAC 59.269 52.381 4.18 0.00 0.00 2.50
3632 3892 0.389426 ACTGCGCCTAACCTGTAACG 60.389 55.000 4.18 0.00 0.00 3.18
3633 3893 1.693083 CTGCGCCTAACCTGTAACGC 61.693 60.000 4.18 0.00 46.05 4.84
3634 3894 1.738830 GCGCCTAACCTGTAACGCA 60.739 57.895 0.00 0.00 45.25 5.24
3635 3895 1.693083 GCGCCTAACCTGTAACGCAG 61.693 60.000 0.00 0.00 45.25 5.18
3646 3906 3.745332 TGTAACGCAGAGCATTGATTG 57.255 42.857 0.00 0.00 0.00 2.67
3647 3907 3.073678 TGTAACGCAGAGCATTGATTGT 58.926 40.909 0.00 0.00 0.00 2.71
3648 3908 2.907910 AACGCAGAGCATTGATTGTC 57.092 45.000 0.00 0.00 0.00 3.18
3649 3909 2.105006 ACGCAGAGCATTGATTGTCT 57.895 45.000 0.00 0.00 0.00 3.41
3650 3910 1.736126 ACGCAGAGCATTGATTGTCTG 59.264 47.619 0.00 0.00 36.95 3.51
3651 3911 2.004733 CGCAGAGCATTGATTGTCTGA 58.995 47.619 2.40 0.00 36.44 3.27
3652 3912 2.612672 CGCAGAGCATTGATTGTCTGAT 59.387 45.455 2.40 0.00 36.44 2.90
3653 3913 3.805971 CGCAGAGCATTGATTGTCTGATA 59.194 43.478 2.40 0.00 36.44 2.15
3654 3914 4.271776 CGCAGAGCATTGATTGTCTGATAA 59.728 41.667 2.40 0.00 36.44 1.75
3655 3915 5.558463 CGCAGAGCATTGATTGTCTGATAAG 60.558 44.000 2.40 0.00 36.44 1.73
3656 3916 5.749620 CAGAGCATTGATTGTCTGATAAGC 58.250 41.667 0.00 0.00 36.44 3.09
3657 3917 5.527951 CAGAGCATTGATTGTCTGATAAGCT 59.472 40.000 4.13 1.40 36.44 3.74
3658 3918 5.759273 AGAGCATTGATTGTCTGATAAGCTC 59.241 40.000 13.67 13.67 43.59 4.09
3659 3919 5.434408 AGCATTGATTGTCTGATAAGCTCA 58.566 37.500 4.13 0.00 0.00 4.26
3660 3920 5.296283 AGCATTGATTGTCTGATAAGCTCAC 59.704 40.000 4.13 0.00 0.00 3.51
3661 3921 5.735324 CATTGATTGTCTGATAAGCTCACG 58.265 41.667 4.13 0.00 0.00 4.35
3662 3922 3.190079 TGATTGTCTGATAAGCTCACGC 58.810 45.455 4.13 0.00 0.00 5.34
3663 3923 2.741759 TTGTCTGATAAGCTCACGCA 57.258 45.000 0.00 0.00 39.10 5.24
3664 3924 2.741759 TGTCTGATAAGCTCACGCAA 57.258 45.000 0.00 0.00 39.10 4.85
3665 3925 3.038788 TGTCTGATAAGCTCACGCAAA 57.961 42.857 0.00 0.00 39.10 3.68
3666 3926 2.736721 TGTCTGATAAGCTCACGCAAAC 59.263 45.455 0.00 0.00 39.10 2.93
3667 3927 2.736721 GTCTGATAAGCTCACGCAAACA 59.263 45.455 0.00 0.00 39.10 2.83
3668 3928 3.186409 GTCTGATAAGCTCACGCAAACAA 59.814 43.478 0.00 0.00 39.10 2.83
3669 3929 3.186409 TCTGATAAGCTCACGCAAACAAC 59.814 43.478 0.00 0.00 39.10 3.32
3670 3930 2.875317 TGATAAGCTCACGCAAACAACA 59.125 40.909 0.00 0.00 39.10 3.33
3671 3931 3.313803 TGATAAGCTCACGCAAACAACAA 59.686 39.130 0.00 0.00 39.10 2.83
3672 3932 2.645730 AAGCTCACGCAAACAACAAA 57.354 40.000 0.00 0.00 39.10 2.83
3673 3933 2.645730 AGCTCACGCAAACAACAAAA 57.354 40.000 0.00 0.00 39.10 2.44
3674 3934 2.258755 AGCTCACGCAAACAACAAAAC 58.741 42.857 0.00 0.00 39.10 2.43
3675 3935 2.094752 AGCTCACGCAAACAACAAAACT 60.095 40.909 0.00 0.00 39.10 2.66
3676 3936 2.027926 GCTCACGCAAACAACAAAACTG 59.972 45.455 0.00 0.00 35.78 3.16
3677 3937 3.497118 CTCACGCAAACAACAAAACTGA 58.503 40.909 0.00 0.00 0.00 3.41
3678 3938 3.238441 TCACGCAAACAACAAAACTGAC 58.762 40.909 0.00 0.00 0.00 3.51
3679 3939 2.983136 CACGCAAACAACAAAACTGACA 59.017 40.909 0.00 0.00 0.00 3.58
3680 3940 3.426859 CACGCAAACAACAAAACTGACAA 59.573 39.130 0.00 0.00 0.00 3.18
3681 3941 3.672867 ACGCAAACAACAAAACTGACAAG 59.327 39.130 0.00 0.00 0.00 3.16
3682 3942 3.672867 CGCAAACAACAAAACTGACAAGT 59.327 39.130 0.00 0.00 38.71 3.16
3684 3944 5.373262 GCAAACAACAAAACTGACAAGTTG 58.627 37.500 0.00 0.00 46.15 3.16
3685 3945 5.614449 GCAAACAACAAAACTGACAAGTTGG 60.614 40.000 7.96 0.00 46.15 3.77
3686 3946 4.186856 ACAACAAAACTGACAAGTTGGG 57.813 40.909 7.96 0.00 46.15 4.12
3687 3947 2.929398 CAACAAAACTGACAAGTTGGGC 59.071 45.455 7.96 0.00 46.15 5.36
3688 3948 1.480545 ACAAAACTGACAAGTTGGGCC 59.519 47.619 7.96 0.00 46.15 5.80
3689 3949 1.119684 AAAACTGACAAGTTGGGCCC 58.880 50.000 17.59 17.59 46.15 5.80
3690 3950 0.032615 AAACTGACAAGTTGGGCCCA 60.033 50.000 24.45 24.45 46.15 5.36
3691 3951 0.755327 AACTGACAAGTTGGGCCCAC 60.755 55.000 28.70 20.08 45.12 4.61
3692 3952 1.151450 CTGACAAGTTGGGCCCACT 59.849 57.895 28.70 22.16 0.00 4.00
3693 3953 0.468029 CTGACAAGTTGGGCCCACTT 60.468 55.000 28.70 26.50 0.00 3.16
3694 3954 0.754957 TGACAAGTTGGGCCCACTTG 60.755 55.000 38.39 38.39 44.43 3.16
3695 3955 1.309688 ACAAGTTGGGCCCACTTGT 59.690 52.632 39.27 39.27 46.16 3.16
3696 3956 2.041153 CAAGTTGGGCCCACTTGTC 58.959 57.895 35.35 22.06 36.89 3.18
3697 3957 1.528309 AAGTTGGGCCCACTTGTCG 60.528 57.895 28.70 0.00 0.00 4.35
3698 3958 2.976494 AAGTTGGGCCCACTTGTCGG 62.976 60.000 28.70 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.153550 AGAGATGTTTCAACTAGAACATCAGTT 58.846 33.333 25.25 12.90 41.73 3.16
1 2 7.675062 AGAGATGTTTCAACTAGAACATCAGT 58.325 34.615 25.25 15.13 41.73 3.41
2 3 8.034215 AGAGAGATGTTTCAACTAGAACATCAG 58.966 37.037 25.25 0.00 41.73 2.90
3 4 7.816513 CAGAGAGATGTTTCAACTAGAACATCA 59.183 37.037 25.25 8.47 41.73 3.07
4 5 7.277539 CCAGAGAGATGTTTCAACTAGAACATC 59.722 40.741 19.86 19.86 40.78 3.06
5 6 7.102346 CCAGAGAGATGTTTCAACTAGAACAT 58.898 38.462 7.12 7.12 35.56 2.71
6 7 6.459066 CCAGAGAGATGTTTCAACTAGAACA 58.541 40.000 0.00 0.00 35.56 3.18
7 8 5.872070 CCCAGAGAGATGTTTCAACTAGAAC 59.128 44.000 0.00 0.00 35.56 3.01
8 9 5.780282 TCCCAGAGAGATGTTTCAACTAGAA 59.220 40.000 0.00 0.00 0.00 2.10
9 10 5.333581 TCCCAGAGAGATGTTTCAACTAGA 58.666 41.667 0.00 0.00 0.00 2.43
10 11 5.667539 TCCCAGAGAGATGTTTCAACTAG 57.332 43.478 0.00 0.00 0.00 2.57
11 12 6.183361 TGTTTCCCAGAGAGATGTTTCAACTA 60.183 38.462 0.00 0.00 0.00 2.24
12 13 4.982241 TTCCCAGAGAGATGTTTCAACT 57.018 40.909 0.00 0.00 0.00 3.16
13 14 4.821805 TGTTTCCCAGAGAGATGTTTCAAC 59.178 41.667 0.00 0.00 0.00 3.18
14 15 5.047566 TGTTTCCCAGAGAGATGTTTCAA 57.952 39.130 0.00 0.00 0.00 2.69
15 16 4.705110 TGTTTCCCAGAGAGATGTTTCA 57.295 40.909 0.00 0.00 0.00 2.69
16 17 6.581171 ATTTGTTTCCCAGAGAGATGTTTC 57.419 37.500 0.00 0.00 0.00 2.78
17 18 6.983906 AATTTGTTTCCCAGAGAGATGTTT 57.016 33.333 0.00 0.00 0.00 2.83
18 19 6.983906 AAATTTGTTTCCCAGAGAGATGTT 57.016 33.333 0.00 0.00 0.00 2.71
19 20 6.983906 AAAATTTGTTTCCCAGAGAGATGT 57.016 33.333 0.00 0.00 0.00 3.06
20 21 9.933723 AAATAAAATTTGTTTCCCAGAGAGATG 57.066 29.630 0.00 0.00 0.00 2.90
69 70 8.951243 GGCTCTCTCTCAAGTTTATTGTTTATT 58.049 33.333 0.00 0.00 0.00 1.40
70 71 8.103305 TGGCTCTCTCTCAAGTTTATTGTTTAT 58.897 33.333 0.00 0.00 0.00 1.40
71 72 7.450074 TGGCTCTCTCTCAAGTTTATTGTTTA 58.550 34.615 0.00 0.00 0.00 2.01
72 73 6.299141 TGGCTCTCTCTCAAGTTTATTGTTT 58.701 36.000 0.00 0.00 0.00 2.83
73 74 5.869579 TGGCTCTCTCTCAAGTTTATTGTT 58.130 37.500 0.00 0.00 0.00 2.83
74 75 5.489792 TGGCTCTCTCTCAAGTTTATTGT 57.510 39.130 0.00 0.00 0.00 2.71
75 76 6.822676 AGATTGGCTCTCTCTCAAGTTTATTG 59.177 38.462 0.00 0.00 0.00 1.90
76 77 6.822676 CAGATTGGCTCTCTCTCAAGTTTATT 59.177 38.462 0.00 0.00 29.16 1.40
77 78 6.155910 TCAGATTGGCTCTCTCTCAAGTTTAT 59.844 38.462 0.00 0.00 29.16 1.40
78 79 5.481824 TCAGATTGGCTCTCTCTCAAGTTTA 59.518 40.000 0.00 0.00 29.16 2.01
79 80 4.285517 TCAGATTGGCTCTCTCTCAAGTTT 59.714 41.667 0.00 0.00 29.16 2.66
80 81 3.837146 TCAGATTGGCTCTCTCTCAAGTT 59.163 43.478 0.00 0.00 29.16 2.66
81 82 3.195396 GTCAGATTGGCTCTCTCTCAAGT 59.805 47.826 0.00 0.00 29.16 3.16
82 83 3.195182 TGTCAGATTGGCTCTCTCTCAAG 59.805 47.826 0.00 0.00 29.16 3.02
83 84 3.168292 TGTCAGATTGGCTCTCTCTCAA 58.832 45.455 0.00 0.00 29.16 3.02
84 85 2.759535 CTGTCAGATTGGCTCTCTCTCA 59.240 50.000 0.00 0.00 29.16 3.27
85 86 3.023119 TCTGTCAGATTGGCTCTCTCTC 58.977 50.000 0.00 0.00 29.16 3.20
86 87 2.760092 GTCTGTCAGATTGGCTCTCTCT 59.240 50.000 5.68 0.00 29.16 3.10
87 88 2.479389 CGTCTGTCAGATTGGCTCTCTC 60.479 54.545 5.68 0.00 29.16 3.20
88 89 1.476085 CGTCTGTCAGATTGGCTCTCT 59.524 52.381 5.68 0.00 29.16 3.10
89 90 1.203523 ACGTCTGTCAGATTGGCTCTC 59.796 52.381 5.68 0.00 29.16 3.20
90 91 1.067283 CACGTCTGTCAGATTGGCTCT 60.067 52.381 5.68 0.00 33.14 4.09
91 92 1.067565 TCACGTCTGTCAGATTGGCTC 60.068 52.381 5.68 0.00 0.00 4.70
92 93 0.969149 TCACGTCTGTCAGATTGGCT 59.031 50.000 5.68 0.00 0.00 4.75
93 94 1.354040 CTCACGTCTGTCAGATTGGC 58.646 55.000 5.68 0.00 0.00 4.52
94 95 1.354040 GCTCACGTCTGTCAGATTGG 58.646 55.000 5.68 1.64 0.00 3.16
95 96 0.987715 CGCTCACGTCTGTCAGATTG 59.012 55.000 5.68 6.93 33.53 2.67
96 97 0.881796 TCGCTCACGTCTGTCAGATT 59.118 50.000 5.68 0.00 41.18 2.40
97 98 0.169230 GTCGCTCACGTCTGTCAGAT 59.831 55.000 5.68 0.00 41.18 2.90
98 99 1.574925 GTCGCTCACGTCTGTCAGA 59.425 57.895 0.00 0.00 41.18 3.27
176 177 2.147387 GGAGGAGTGGGTGTGGTGT 61.147 63.158 0.00 0.00 0.00 4.16
207 208 3.239449 GGGGAATGGAAGAGTGGTTTTT 58.761 45.455 0.00 0.00 0.00 1.94
208 209 2.178984 TGGGGAATGGAAGAGTGGTTTT 59.821 45.455 0.00 0.00 0.00 2.43
209 210 1.786441 TGGGGAATGGAAGAGTGGTTT 59.214 47.619 0.00 0.00 0.00 3.27
210 211 1.075536 GTGGGGAATGGAAGAGTGGTT 59.924 52.381 0.00 0.00 0.00 3.67
218 219 0.999712 GGAGGAAGTGGGGAATGGAA 59.000 55.000 0.00 0.00 0.00 3.53
231 232 0.105401 GGGTTTGGTTTGGGGAGGAA 60.105 55.000 0.00 0.00 0.00 3.36
1152 1225 2.040278 CTCTCCAGGTGAGGGGCT 59.960 66.667 10.36 0.00 41.76 5.19
1160 1233 0.617249 CTGGAAGAGCCTCTCCAGGT 60.617 60.000 22.49 0.00 44.32 4.00
1257 1348 1.502163 GATATCCCAGCACACGCAGC 61.502 60.000 0.00 0.00 42.27 5.25
1335 1450 6.620678 ACATTGGCATTATTAACTGACACAC 58.379 36.000 0.00 0.00 27.73 3.82
1363 1487 7.998964 ACCAAGGAAAGAGAAACTAATTCAGAA 59.001 33.333 0.00 0.00 40.72 3.02
1381 1505 0.680618 CCTGCAATGCAACCAAGGAA 59.319 50.000 9.92 0.00 38.41 3.36
1411 1542 5.084519 TGTACACTAGGGACAATGTTCTCT 58.915 41.667 0.00 0.00 0.00 3.10
1611 1747 6.686378 GCAGGTCATTTCTATATCTGTGGTCA 60.686 42.308 0.00 0.00 0.00 4.02
1614 1750 5.699915 CAGCAGGTCATTTCTATATCTGTGG 59.300 44.000 0.00 0.00 0.00 4.17
1616 1752 5.744300 GCCAGCAGGTCATTTCTATATCTGT 60.744 44.000 0.00 0.00 37.19 3.41
1617 1753 4.694509 GCCAGCAGGTCATTTCTATATCTG 59.305 45.833 0.00 0.00 37.19 2.90
1619 1755 4.006319 GGCCAGCAGGTCATTTCTATATC 58.994 47.826 0.00 0.00 40.10 1.63
1620 1756 3.654806 AGGCCAGCAGGTCATTTCTATAT 59.345 43.478 5.01 0.00 43.99 0.86
1621 1757 3.048600 AGGCCAGCAGGTCATTTCTATA 58.951 45.455 5.01 0.00 43.99 1.31
1622 1758 1.849039 AGGCCAGCAGGTCATTTCTAT 59.151 47.619 5.01 0.00 43.99 1.98
1624 1760 0.323178 CAGGCCAGCAGGTCATTTCT 60.323 55.000 5.01 0.00 43.99 2.52
1625 1761 1.941999 GCAGGCCAGCAGGTCATTTC 61.942 60.000 16.36 0.00 43.99 2.17
1626 1762 1.980772 GCAGGCCAGCAGGTCATTT 60.981 57.895 16.36 0.00 43.99 2.32
1628 1764 1.351080 ATAGCAGGCCAGCAGGTCAT 61.351 55.000 23.38 2.46 43.99 3.06
1660 1796 1.503818 AAACATCTTTGCGACGCCGT 61.504 50.000 18.69 0.00 38.24 5.68
1676 1812 6.243148 TGTTTCTATCACTAAAGGGGGAAAC 58.757 40.000 13.85 13.85 40.56 2.78
1721 1861 8.964476 ACCATGTACTGAATACTAAGGAAATG 57.036 34.615 0.00 0.00 34.56 2.32
1733 1873 8.657387 AGCTCTATATGTACCATGTACTGAAT 57.343 34.615 6.02 0.76 0.00 2.57
1738 1878 9.408069 GTACAAAGCTCTATATGTACCATGTAC 57.592 37.037 12.17 0.00 41.27 2.90
1746 1886 7.578310 ACTTCGGTACAAAGCTCTATATGTA 57.422 36.000 7.05 0.00 0.00 2.29
1747 1887 6.466885 ACTTCGGTACAAAGCTCTATATGT 57.533 37.500 7.05 0.00 0.00 2.29
1748 1888 7.919091 TGTAACTTCGGTACAAAGCTCTATATG 59.081 37.037 7.05 0.00 0.00 1.78
1749 1889 8.004087 TGTAACTTCGGTACAAAGCTCTATAT 57.996 34.615 7.05 0.00 0.00 0.86
1750 1890 7.395190 TGTAACTTCGGTACAAAGCTCTATA 57.605 36.000 7.05 0.00 0.00 1.31
1751 1891 6.276832 TGTAACTTCGGTACAAAGCTCTAT 57.723 37.500 7.05 0.00 0.00 1.98
1752 1892 5.336213 CCTGTAACTTCGGTACAAAGCTCTA 60.336 44.000 7.05 0.00 0.00 2.43
1753 1893 4.557205 CTGTAACTTCGGTACAAAGCTCT 58.443 43.478 7.05 0.00 0.00 4.09
1754 1894 3.678548 CCTGTAACTTCGGTACAAAGCTC 59.321 47.826 7.05 0.85 0.00 4.09
1755 1895 3.322828 TCCTGTAACTTCGGTACAAAGCT 59.677 43.478 7.05 0.00 0.00 3.74
1756 1896 3.656559 TCCTGTAACTTCGGTACAAAGC 58.343 45.455 7.05 0.00 0.00 3.51
1757 1897 4.879598 ACTCCTGTAACTTCGGTACAAAG 58.120 43.478 0.00 0.22 0.00 2.77
1758 1898 4.557296 CGACTCCTGTAACTTCGGTACAAA 60.557 45.833 0.00 0.00 0.00 2.83
1759 1899 3.058016 CGACTCCTGTAACTTCGGTACAA 60.058 47.826 0.00 0.00 0.00 2.41
1760 1900 2.485426 CGACTCCTGTAACTTCGGTACA 59.515 50.000 0.00 0.00 0.00 2.90
1761 1901 2.744202 TCGACTCCTGTAACTTCGGTAC 59.256 50.000 0.00 0.00 0.00 3.34
1762 1902 2.744202 GTCGACTCCTGTAACTTCGGTA 59.256 50.000 8.70 0.00 0.00 4.02
1763 1903 1.538950 GTCGACTCCTGTAACTTCGGT 59.461 52.381 8.70 0.00 0.00 4.69
1764 1904 1.135460 GGTCGACTCCTGTAACTTCGG 60.135 57.143 16.46 0.00 0.00 4.30
1765 1905 1.465354 CGGTCGACTCCTGTAACTTCG 60.465 57.143 16.46 1.66 0.00 3.79
1766 1906 1.538950 ACGGTCGACTCCTGTAACTTC 59.461 52.381 16.46 0.00 0.00 3.01
1767 1907 1.268899 CACGGTCGACTCCTGTAACTT 59.731 52.381 16.46 0.00 0.00 2.66
1768 1908 0.879765 CACGGTCGACTCCTGTAACT 59.120 55.000 16.46 0.00 0.00 2.24
1769 1909 0.595095 ACACGGTCGACTCCTGTAAC 59.405 55.000 16.46 0.00 0.00 2.50
1770 1910 0.594602 CACACGGTCGACTCCTGTAA 59.405 55.000 16.46 0.00 0.00 2.41
1771 1911 1.859427 GCACACGGTCGACTCCTGTA 61.859 60.000 16.46 0.00 0.00 2.74
1772 1912 3.039988 CACACGGTCGACTCCTGT 58.960 61.111 16.46 11.04 0.00 4.00
1773 1913 2.430921 GCACACGGTCGACTCCTG 60.431 66.667 16.46 10.40 0.00 3.86
1774 1914 2.910479 TGCACACGGTCGACTCCT 60.910 61.111 16.46 0.00 0.00 3.69
1775 1915 2.733593 GTGCACACGGTCGACTCC 60.734 66.667 16.46 0.00 0.00 3.85
1776 1916 2.797866 ATCGTGCACACGGTCGACTC 62.798 60.000 21.73 4.72 46.40 3.36
1777 1917 2.916052 ATCGTGCACACGGTCGACT 61.916 57.895 21.73 0.00 46.40 4.18
1778 1918 2.430244 ATCGTGCACACGGTCGAC 60.430 61.111 21.73 7.13 46.40 4.20
1785 1925 1.260206 CTACTCACGATCGTGCACAC 58.740 55.000 37.14 6.63 45.04 3.82
1786 1926 0.879090 ACTACTCACGATCGTGCACA 59.121 50.000 37.14 22.64 45.04 4.57
1787 1927 1.260206 CACTACTCACGATCGTGCAC 58.740 55.000 37.14 6.82 45.04 4.57
1788 1928 3.694889 CACTACTCACGATCGTGCA 57.305 52.632 37.14 25.63 45.04 4.57
1789 1929 1.464429 CGCACTACTCACGATCGTGC 61.464 60.000 37.14 24.78 45.04 5.34
1790 1930 1.464429 GCGCACTACTCACGATCGTG 61.464 60.000 36.47 36.47 46.64 4.35
1791 1931 1.226323 GCGCACTACTCACGATCGT 60.226 57.895 16.60 16.60 0.00 3.73
1792 1932 0.303796 TAGCGCACTACTCACGATCG 59.696 55.000 14.88 14.88 0.00 3.69
1793 1933 1.744374 GTAGCGCACTACTCACGATC 58.256 55.000 11.47 0.00 44.61 3.69
1794 1934 3.920144 GTAGCGCACTACTCACGAT 57.080 52.632 11.47 0.00 44.61 3.73
1802 1942 1.107945 TGCCTGTATGTAGCGCACTA 58.892 50.000 11.47 0.00 0.00 2.74
1803 1943 0.249120 TTGCCTGTATGTAGCGCACT 59.751 50.000 11.47 0.00 0.00 4.40
1804 1944 1.062587 CTTTGCCTGTATGTAGCGCAC 59.937 52.381 11.47 6.60 0.00 5.34
1805 1945 1.066502 TCTTTGCCTGTATGTAGCGCA 60.067 47.619 11.47 0.00 0.00 6.09
1806 1946 1.327764 GTCTTTGCCTGTATGTAGCGC 59.672 52.381 0.00 0.00 0.00 5.92
1807 1947 1.933853 GGTCTTTGCCTGTATGTAGCG 59.066 52.381 0.00 0.00 0.00 4.26
1808 1948 2.985896 TGGTCTTTGCCTGTATGTAGC 58.014 47.619 0.00 0.00 0.00 3.58
1809 1949 4.579869 ACTTGGTCTTTGCCTGTATGTAG 58.420 43.478 0.00 0.00 0.00 2.74
1832 1972 6.748333 AATGTCATGTTCAGTTATCCTGTG 57.252 37.500 0.00 0.00 42.19 3.66
1858 1998 7.374272 TGTCATGTTCAGTTCTTTGTCAAAAA 58.626 30.769 0.00 0.00 0.00 1.94
1859 1999 6.918626 TGTCATGTTCAGTTCTTTGTCAAAA 58.081 32.000 0.00 0.00 0.00 2.44
1860 2000 6.507958 TGTCATGTTCAGTTCTTTGTCAAA 57.492 33.333 0.00 0.00 0.00 2.69
1861 2001 6.318396 TCATGTCATGTTCAGTTCTTTGTCAA 59.682 34.615 12.54 0.00 0.00 3.18
1862 2002 5.821995 TCATGTCATGTTCAGTTCTTTGTCA 59.178 36.000 12.54 0.00 0.00 3.58
1863 2003 6.304356 TCATGTCATGTTCAGTTCTTTGTC 57.696 37.500 12.54 0.00 0.00 3.18
1864 2004 6.698008 TTCATGTCATGTTCAGTTCTTTGT 57.302 33.333 12.54 0.00 0.00 2.83
1865 2005 9.850628 ATTATTCATGTCATGTTCAGTTCTTTG 57.149 29.630 12.54 0.00 0.00 2.77
1866 2006 9.850628 CATTATTCATGTCATGTTCAGTTCTTT 57.149 29.630 12.54 0.00 0.00 2.52
1867 2007 9.017509 ACATTATTCATGTCATGTTCAGTTCTT 57.982 29.630 12.54 0.00 43.17 2.52
1868 2008 8.571461 ACATTATTCATGTCATGTTCAGTTCT 57.429 30.769 12.54 0.00 43.17 3.01
1869 2009 9.708222 GTACATTATTCATGTCATGTTCAGTTC 57.292 33.333 12.54 1.25 43.17 3.01
1870 2010 9.230122 TGTACATTATTCATGTCATGTTCAGTT 57.770 29.630 12.54 0.00 43.17 3.16
1871 2011 8.668353 GTGTACATTATTCATGTCATGTTCAGT 58.332 33.333 12.54 7.81 43.17 3.41
1872 2012 8.667463 TGTGTACATTATTCATGTCATGTTCAG 58.333 33.333 12.54 2.77 43.17 3.02
1873 2013 8.558973 TGTGTACATTATTCATGTCATGTTCA 57.441 30.769 12.54 0.00 43.17 3.18
1874 2014 9.442033 CATGTGTACATTATTCATGTCATGTTC 57.558 33.333 12.54 0.00 43.17 3.18
1875 2015 8.407832 CCATGTGTACATTATTCATGTCATGTT 58.592 33.333 17.35 4.77 43.17 2.71
1876 2016 7.774625 TCCATGTGTACATTATTCATGTCATGT 59.225 33.333 17.35 0.00 43.17 3.21
1877 2017 8.156994 TCCATGTGTACATTATTCATGTCATG 57.843 34.615 17.35 6.47 43.17 3.07
1878 2018 8.929260 ATCCATGTGTACATTATTCATGTCAT 57.071 30.769 17.35 9.44 43.17 3.06
1879 2019 8.750515 AATCCATGTGTACATTATTCATGTCA 57.249 30.769 17.35 8.02 43.17 3.58
1906 2046 3.605013 GTTGCAACCATTGTTCCCC 57.395 52.632 19.15 0.00 30.42 4.81
1926 2067 8.784043 CCATTAGTACCAGATAAAAATACTGCC 58.216 37.037 0.00 0.00 0.00 4.85
2002 2162 2.290323 GCTATCCAAGTGTGACAACCCT 60.290 50.000 0.00 0.00 0.00 4.34
2114 2275 6.007076 TGGTATTGCAAAATTACCAGACAGA 58.993 36.000 21.28 3.52 39.02 3.41
2131 2292 7.877612 TGCTATATAACATGGACACTGGTATTG 59.122 37.037 0.00 0.00 29.57 1.90
2262 2423 1.788258 AATCGATCAGCCGCATACAG 58.212 50.000 0.00 0.00 0.00 2.74
2319 2486 4.070716 CAGAACTTGAGATTGACCTTGCT 58.929 43.478 0.00 0.00 0.00 3.91
2381 2548 4.872664 ACTCGTAGAAGAACAACCTCTTG 58.127 43.478 0.00 0.00 35.76 3.02
2386 2553 2.985139 CGGAACTCGTAGAAGAACAACC 59.015 50.000 0.00 0.00 34.09 3.77
2594 2768 2.887152 AGGACCAGAAACATTTGTGAGC 59.113 45.455 3.21 0.00 33.69 4.26
2735 2927 5.811796 TTACACAAAGTCTAGCTGGGTAA 57.188 39.130 0.00 0.00 0.00 2.85
2749 2941 7.479980 CACAAAGATCCTTCACTTTACACAAA 58.520 34.615 0.00 0.00 35.07 2.83
2752 2944 5.008613 TGCACAAAGATCCTTCACTTTACAC 59.991 40.000 0.00 0.00 35.07 2.90
2756 2948 4.038402 CCTTGCACAAAGATCCTTCACTTT 59.962 41.667 0.00 0.00 38.24 2.66
2757 2949 3.571401 CCTTGCACAAAGATCCTTCACTT 59.429 43.478 0.00 0.00 38.24 3.16
2759 2951 3.057946 GTCCTTGCACAAAGATCCTTCAC 60.058 47.826 0.00 0.00 38.24 3.18
2761 2953 2.489722 GGTCCTTGCACAAAGATCCTTC 59.510 50.000 0.00 0.00 38.24 3.46
2762 2954 2.108952 AGGTCCTTGCACAAAGATCCTT 59.891 45.455 0.00 0.00 38.24 3.36
2765 2957 3.944087 AGTAGGTCCTTGCACAAAGATC 58.056 45.455 0.00 0.00 38.24 2.75
2766 2958 4.074970 CAAGTAGGTCCTTGCACAAAGAT 58.925 43.478 0.00 0.00 38.24 2.40
2767 2959 3.476552 CAAGTAGGTCCTTGCACAAAGA 58.523 45.455 0.00 0.00 38.24 2.52
2768 2960 2.554032 CCAAGTAGGTCCTTGCACAAAG 59.446 50.000 0.00 0.00 40.40 2.77
2769 2961 2.582052 CCAAGTAGGTCCTTGCACAAA 58.418 47.619 0.00 0.00 40.40 2.83
2770 2962 1.817740 GCCAAGTAGGTCCTTGCACAA 60.818 52.381 0.00 0.00 40.40 3.33
2773 2965 0.476338 TTGCCAAGTAGGTCCTTGCA 59.524 50.000 0.00 0.00 40.40 4.08
2776 2968 1.068121 AGCTTGCCAAGTAGGTCCTT 58.932 50.000 6.28 0.00 40.61 3.36
2778 2970 0.036875 ACAGCTTGCCAAGTAGGTCC 59.963 55.000 6.28 0.00 40.61 4.46
2785 2977 0.389426 GCATTCCACAGCTTGCCAAG 60.389 55.000 0.00 0.00 0.00 3.61
2815 3007 4.466015 ACATCCCACACAAAACTTCACTTT 59.534 37.500 0.00 0.00 0.00 2.66
2859 3051 7.923414 AATAAAGGTGAAGACGCTCTAATTT 57.077 32.000 0.00 0.00 0.00 1.82
2886 3108 9.539825 CACAAAGATCATTAGCACTAGATAACT 57.460 33.333 0.00 0.00 0.00 2.24
2929 3152 4.853924 AGTCACATCCCACACAAAAATC 57.146 40.909 0.00 0.00 0.00 2.17
2948 3171 8.584157 CCAGAAAGATCATTAGCACTAGATAGT 58.416 37.037 0.00 0.00 36.90 2.12
2978 3201 5.240183 CAGATTAATTCATGGCCAGTTCGAT 59.760 40.000 13.05 0.00 0.00 3.59
2981 3204 4.340381 AGCAGATTAATTCATGGCCAGTTC 59.660 41.667 13.05 0.00 0.00 3.01
3064 3322 7.832503 AGTTTGTGAAAATCAAAACCAAGAG 57.167 32.000 11.18 0.00 36.71 2.85
3113 3372 8.662781 TCTCCAATTGCAGTAATCAGTAATAC 57.337 34.615 0.00 0.00 0.00 1.89
3137 3396 3.261897 TGTGAAGGTTTCCCAGATCTCTC 59.738 47.826 0.00 0.00 0.00 3.20
3159 3419 7.410174 TCTGGTAATGATATTGGTCCTGTTTT 58.590 34.615 0.00 0.00 0.00 2.43
3207 3467 2.695359 TGACGGTTCCATGCTTAACTC 58.305 47.619 0.00 0.00 0.00 3.01
3227 3487 5.871396 ACATCTGGTTCGGTACTGAATAT 57.129 39.130 19.79 9.00 0.00 1.28
3229 3489 4.099573 CCTACATCTGGTTCGGTACTGAAT 59.900 45.833 19.79 5.17 0.00 2.57
3232 3492 2.758979 ACCTACATCTGGTTCGGTACTG 59.241 50.000 0.00 0.00 33.34 2.74
3314 3574 6.636454 AGACCATTACCAGAAAGACCATAA 57.364 37.500 0.00 0.00 0.00 1.90
3315 3575 6.636454 AAGACCATTACCAGAAAGACCATA 57.364 37.500 0.00 0.00 0.00 2.74
3316 3576 5.520748 AAGACCATTACCAGAAAGACCAT 57.479 39.130 0.00 0.00 0.00 3.55
3317 3577 4.993705 AAGACCATTACCAGAAAGACCA 57.006 40.909 0.00 0.00 0.00 4.02
3318 3578 5.412904 CAGAAAGACCATTACCAGAAAGACC 59.587 44.000 0.00 0.00 0.00 3.85
3319 3579 5.412904 CCAGAAAGACCATTACCAGAAAGAC 59.587 44.000 0.00 0.00 0.00 3.01
3320 3580 5.073144 ACCAGAAAGACCATTACCAGAAAGA 59.927 40.000 0.00 0.00 0.00 2.52
3321 3581 5.316987 ACCAGAAAGACCATTACCAGAAAG 58.683 41.667 0.00 0.00 0.00 2.62
3322 3582 5.319043 ACCAGAAAGACCATTACCAGAAA 57.681 39.130 0.00 0.00 0.00 2.52
3323 3583 4.993705 ACCAGAAAGACCATTACCAGAA 57.006 40.909 0.00 0.00 0.00 3.02
3324 3584 4.993705 AACCAGAAAGACCATTACCAGA 57.006 40.909 0.00 0.00 0.00 3.86
3325 3585 4.827284 ACAAACCAGAAAGACCATTACCAG 59.173 41.667 0.00 0.00 0.00 4.00
3326 3586 4.798882 ACAAACCAGAAAGACCATTACCA 58.201 39.130 0.00 0.00 0.00 3.25
3327 3587 4.217767 GGACAAACCAGAAAGACCATTACC 59.782 45.833 0.00 0.00 38.79 2.85
3328 3588 4.825085 TGGACAAACCAGAAAGACCATTAC 59.175 41.667 0.00 0.00 44.64 1.89
3329 3589 5.055265 TGGACAAACCAGAAAGACCATTA 57.945 39.130 0.00 0.00 44.64 1.90
3330 3590 3.909732 TGGACAAACCAGAAAGACCATT 58.090 40.909 0.00 0.00 44.64 3.16
3331 3591 3.593442 TGGACAAACCAGAAAGACCAT 57.407 42.857 0.00 0.00 44.64 3.55
3342 3602 6.859420 ATTTTAATTGCAGTTGGACAAACC 57.141 33.333 4.47 0.00 39.85 3.27
3343 3603 8.987890 ACATATTTTAATTGCAGTTGGACAAAC 58.012 29.630 4.47 0.00 39.24 2.93
3344 3604 9.553064 AACATATTTTAATTGCAGTTGGACAAA 57.447 25.926 4.47 0.00 0.00 2.83
3361 3621 4.947645 ACAGCAAGTGCACAACATATTTT 58.052 34.783 21.04 0.00 45.16 1.82
3362 3622 4.589216 ACAGCAAGTGCACAACATATTT 57.411 36.364 21.04 0.00 45.16 1.40
3376 3636 5.422666 TTCATGACACTAACAACAGCAAG 57.577 39.130 0.00 0.00 0.00 4.01
3390 3650 8.929260 AATGGATAGCAGATTAATTCATGACA 57.071 30.769 0.00 0.00 0.00 3.58
3392 3652 9.676861 CCTAATGGATAGCAGATTAATTCATGA 57.323 33.333 0.00 0.00 34.57 3.07
3399 3659 7.072454 AGACCAACCTAATGGATAGCAGATTAA 59.928 37.037 0.00 0.00 43.54 1.40
3406 3666 4.636249 CTGAGACCAACCTAATGGATAGC 58.364 47.826 0.00 0.00 43.54 2.97
3407 3667 4.346418 AGCTGAGACCAACCTAATGGATAG 59.654 45.833 0.00 0.00 43.54 2.08
3408 3668 4.298626 AGCTGAGACCAACCTAATGGATA 58.701 43.478 0.00 0.00 43.54 2.59
3409 3669 3.118531 AGCTGAGACCAACCTAATGGAT 58.881 45.455 0.00 0.00 43.54 3.41
3410 3670 2.501723 GAGCTGAGACCAACCTAATGGA 59.498 50.000 0.00 0.00 43.54 3.41
3411 3671 2.237143 TGAGCTGAGACCAACCTAATGG 59.763 50.000 0.00 0.00 46.38 3.16
3412 3672 3.616956 TGAGCTGAGACCAACCTAATG 57.383 47.619 0.00 0.00 0.00 1.90
3413 3673 4.640771 TTTGAGCTGAGACCAACCTAAT 57.359 40.909 0.00 0.00 0.00 1.73
3414 3674 4.134563 GTTTTGAGCTGAGACCAACCTAA 58.865 43.478 0.00 0.00 0.00 2.69
3415 3675 3.135712 TGTTTTGAGCTGAGACCAACCTA 59.864 43.478 0.00 0.00 0.00 3.08
3416 3676 2.092429 TGTTTTGAGCTGAGACCAACCT 60.092 45.455 0.00 0.00 0.00 3.50
3417 3677 2.291741 CTGTTTTGAGCTGAGACCAACC 59.708 50.000 0.00 0.00 0.00 3.77
3481 3741 8.035394 TGCAAAAGAACCATGTAAAAGTTTGTA 58.965 29.630 0.00 0.00 0.00 2.41
3528 3788 5.302313 TGTGGTGGTTTTGGGTAAATAACTC 59.698 40.000 0.00 0.00 0.00 3.01
3529 3789 5.209659 TGTGGTGGTTTTGGGTAAATAACT 58.790 37.500 0.00 0.00 0.00 2.24
3531 3791 5.209659 ACTGTGGTGGTTTTGGGTAAATAA 58.790 37.500 0.00 0.00 0.00 1.40
3532 3792 4.805744 ACTGTGGTGGTTTTGGGTAAATA 58.194 39.130 0.00 0.00 0.00 1.40
3537 3797 1.945580 AAACTGTGGTGGTTTTGGGT 58.054 45.000 0.00 0.00 33.76 4.51
3538 3798 3.028130 ACTAAACTGTGGTGGTTTTGGG 58.972 45.455 0.00 0.00 37.88 4.12
3540 3800 5.238650 CCTAGACTAAACTGTGGTGGTTTTG 59.761 44.000 0.00 0.00 37.88 2.44
3541 3801 5.374071 CCTAGACTAAACTGTGGTGGTTTT 58.626 41.667 0.00 0.00 37.88 2.43
3543 3803 3.326880 CCCTAGACTAAACTGTGGTGGTT 59.673 47.826 0.00 0.00 0.00 3.67
3545 3805 2.904434 ACCCTAGACTAAACTGTGGTGG 59.096 50.000 0.00 0.00 0.00 4.61
3548 3808 3.767673 TGCTACCCTAGACTAAACTGTGG 59.232 47.826 0.00 0.00 0.00 4.17
3549 3809 5.047235 AGTTGCTACCCTAGACTAAACTGTG 60.047 44.000 0.00 0.00 0.00 3.66
3550 3810 5.085219 AGTTGCTACCCTAGACTAAACTGT 58.915 41.667 0.00 0.00 0.00 3.55
3551 3811 5.662674 AGTTGCTACCCTAGACTAAACTG 57.337 43.478 0.00 0.00 0.00 3.16
3553 3813 7.167924 ACTAAGTTGCTACCCTAGACTAAAC 57.832 40.000 10.58 0.00 0.00 2.01
3555 3815 6.830838 GGTACTAAGTTGCTACCCTAGACTAA 59.169 42.308 10.58 0.00 0.00 2.24
3557 3817 5.199723 GGTACTAAGTTGCTACCCTAGACT 58.800 45.833 10.58 0.00 0.00 3.24
3558 3818 4.952335 TGGTACTAAGTTGCTACCCTAGAC 59.048 45.833 10.58 5.93 30.47 2.59
3559 3819 5.044624 TCTGGTACTAAGTTGCTACCCTAGA 60.045 44.000 10.58 3.85 30.47 2.43
3561 3821 5.197224 TCTGGTACTAAGTTGCTACCCTA 57.803 43.478 7.87 0.00 30.47 3.53
3563 3823 5.354842 AATCTGGTACTAAGTTGCTACCC 57.645 43.478 7.87 0.00 30.47 3.69
3564 3824 5.105064 TGGAATCTGGTACTAAGTTGCTACC 60.105 44.000 0.00 4.54 0.00 3.18
3565 3825 5.974108 TGGAATCTGGTACTAAGTTGCTAC 58.026 41.667 0.00 0.00 0.00 3.58
3566 3826 5.395324 GCTGGAATCTGGTACTAAGTTGCTA 60.395 44.000 0.00 0.00 0.00 3.49
3567 3827 4.624125 GCTGGAATCTGGTACTAAGTTGCT 60.624 45.833 0.00 0.00 0.00 3.91
3568 3828 3.623510 GCTGGAATCTGGTACTAAGTTGC 59.376 47.826 0.00 0.00 0.00 4.17
3569 3829 4.192317 GGCTGGAATCTGGTACTAAGTTG 58.808 47.826 0.00 0.00 0.00 3.16
3570 3830 3.844211 TGGCTGGAATCTGGTACTAAGTT 59.156 43.478 0.00 0.00 0.00 2.66
3571 3831 3.450904 TGGCTGGAATCTGGTACTAAGT 58.549 45.455 0.00 0.00 0.00 2.24
3572 3832 3.181461 CCTGGCTGGAATCTGGTACTAAG 60.181 52.174 4.05 0.00 38.35 2.18
3573 3833 2.771943 CCTGGCTGGAATCTGGTACTAA 59.228 50.000 4.05 0.00 38.35 2.24
3574 3834 2.398588 CCTGGCTGGAATCTGGTACTA 58.601 52.381 4.05 0.00 38.35 1.82
3575 3835 1.207791 CCTGGCTGGAATCTGGTACT 58.792 55.000 4.05 0.00 38.35 2.73
3576 3836 0.181350 CCCTGGCTGGAATCTGGTAC 59.819 60.000 12.58 0.00 38.35 3.34
3577 3837 1.635817 GCCCTGGCTGGAATCTGGTA 61.636 60.000 12.58 0.00 38.35 3.25
3578 3838 2.988839 GCCCTGGCTGGAATCTGGT 61.989 63.158 12.58 0.00 38.35 4.00
3579 3839 2.123982 GCCCTGGCTGGAATCTGG 60.124 66.667 12.58 0.00 38.35 3.86
3580 3840 1.751927 GTGCCCTGGCTGGAATCTG 60.752 63.158 12.58 0.00 42.51 2.90
3581 3841 1.792757 TTGTGCCCTGGCTGGAATCT 61.793 55.000 12.58 0.00 42.51 2.40
3582 3842 0.899717 TTTGTGCCCTGGCTGGAATC 60.900 55.000 12.58 1.50 42.51 2.52
3583 3843 0.471591 TTTTGTGCCCTGGCTGGAAT 60.472 50.000 12.58 0.00 42.51 3.01
3584 3844 0.689080 TTTTTGTGCCCTGGCTGGAA 60.689 50.000 12.58 0.00 42.51 3.53
3585 3845 1.075674 TTTTTGTGCCCTGGCTGGA 60.076 52.632 12.58 0.00 42.51 3.86
3586 3846 3.548488 TTTTTGTGCCCTGGCTGG 58.452 55.556 9.97 2.96 42.51 4.85
3600 3860 1.731093 CGCAGTTCCGGTGGTTTTT 59.269 52.632 0.00 0.00 0.00 1.94
3601 3861 2.841160 GCGCAGTTCCGGTGGTTTT 61.841 57.895 0.30 0.00 0.00 2.43
3602 3862 3.284449 GCGCAGTTCCGGTGGTTT 61.284 61.111 0.30 0.00 0.00 3.27
3605 3865 3.599285 TTAGGCGCAGTTCCGGTGG 62.599 63.158 10.83 0.00 0.00 4.61
3606 3866 2.047655 TTAGGCGCAGTTCCGGTG 60.048 61.111 10.83 0.00 0.00 4.94
3607 3867 2.047560 GTTAGGCGCAGTTCCGGT 60.048 61.111 10.83 0.00 0.00 5.28
3608 3868 2.818274 GGTTAGGCGCAGTTCCGG 60.818 66.667 10.83 0.00 0.00 5.14
3609 3869 2.100631 CAGGTTAGGCGCAGTTCCG 61.101 63.158 10.83 0.00 0.00 4.30
3610 3870 0.248289 TACAGGTTAGGCGCAGTTCC 59.752 55.000 10.83 6.26 0.00 3.62
3611 3871 1.730612 GTTACAGGTTAGGCGCAGTTC 59.269 52.381 10.83 0.00 0.00 3.01
3612 3872 1.804601 GTTACAGGTTAGGCGCAGTT 58.195 50.000 10.83 0.00 0.00 3.16
3613 3873 0.389426 CGTTACAGGTTAGGCGCAGT 60.389 55.000 10.83 0.00 0.00 4.40
3614 3874 1.693083 GCGTTACAGGTTAGGCGCAG 61.693 60.000 10.83 0.00 43.62 5.18
3615 3875 1.738830 GCGTTACAGGTTAGGCGCA 60.739 57.895 10.83 0.00 43.62 6.09
3616 3876 1.693083 CTGCGTTACAGGTTAGGCGC 61.693 60.000 0.00 0.00 43.19 6.53
3617 3877 2.369870 CTGCGTTACAGGTTAGGCG 58.630 57.895 0.00 0.00 43.19 5.52
3626 3886 3.073678 ACAATCAATGCTCTGCGTTACA 58.926 40.909 0.00 0.00 35.42 2.41
3627 3887 3.372206 AGACAATCAATGCTCTGCGTTAC 59.628 43.478 0.00 0.00 35.42 2.50
3628 3888 3.371898 CAGACAATCAATGCTCTGCGTTA 59.628 43.478 0.00 0.00 35.42 3.18
3629 3889 2.161012 CAGACAATCAATGCTCTGCGTT 59.839 45.455 0.00 0.00 38.39 4.84
3630 3890 1.736126 CAGACAATCAATGCTCTGCGT 59.264 47.619 0.00 0.00 33.52 5.24
3631 3891 2.004733 TCAGACAATCAATGCTCTGCG 58.995 47.619 0.00 0.00 37.23 5.18
3632 3892 5.746307 TTATCAGACAATCAATGCTCTGC 57.254 39.130 0.00 0.00 37.23 4.26
3633 3893 5.527951 AGCTTATCAGACAATCAATGCTCTG 59.472 40.000 0.00 0.00 37.96 3.35
3634 3894 5.682659 AGCTTATCAGACAATCAATGCTCT 58.317 37.500 0.00 0.00 0.00 4.09
3635 3895 5.526479 TGAGCTTATCAGACAATCAATGCTC 59.474 40.000 0.00 0.00 42.16 4.26
3636 3896 5.296283 GTGAGCTTATCAGACAATCAATGCT 59.704 40.000 0.00 0.00 39.07 3.79
3637 3897 5.508872 GTGAGCTTATCAGACAATCAATGC 58.491 41.667 0.00 0.00 39.07 3.56
3638 3898 5.735324 CGTGAGCTTATCAGACAATCAATG 58.265 41.667 0.00 0.00 39.07 2.82
3639 3899 5.980698 CGTGAGCTTATCAGACAATCAAT 57.019 39.130 0.00 0.00 39.07 2.57
3656 3916 3.300590 GTCAGTTTTGTTGTTTGCGTGAG 59.699 43.478 0.00 0.00 0.00 3.51
3657 3917 3.238441 GTCAGTTTTGTTGTTTGCGTGA 58.762 40.909 0.00 0.00 0.00 4.35
3658 3918 2.983136 TGTCAGTTTTGTTGTTTGCGTG 59.017 40.909 0.00 0.00 0.00 5.34
3659 3919 3.290308 TGTCAGTTTTGTTGTTTGCGT 57.710 38.095 0.00 0.00 0.00 5.24
3660 3920 3.672867 ACTTGTCAGTTTTGTTGTTTGCG 59.327 39.130 0.00 0.00 0.00 4.85
3661 3921 5.373262 CAACTTGTCAGTTTTGTTGTTTGC 58.627 37.500 0.00 0.00 40.66 3.68
3662 3922 5.107143 CCCAACTTGTCAGTTTTGTTGTTTG 60.107 40.000 0.00 0.00 40.66 2.93
3663 3923 4.994217 CCCAACTTGTCAGTTTTGTTGTTT 59.006 37.500 0.00 0.00 40.66 2.83
3664 3924 4.565022 CCCAACTTGTCAGTTTTGTTGTT 58.435 39.130 0.00 0.00 40.66 2.83
3665 3925 3.616317 GCCCAACTTGTCAGTTTTGTTGT 60.616 43.478 0.00 0.00 40.66 3.32
3666 3926 2.929398 GCCCAACTTGTCAGTTTTGTTG 59.071 45.455 0.00 0.00 40.66 3.33
3667 3927 2.093711 GGCCCAACTTGTCAGTTTTGTT 60.094 45.455 0.00 0.00 40.66 2.83
3668 3928 1.480545 GGCCCAACTTGTCAGTTTTGT 59.519 47.619 0.00 0.00 40.66 2.83
3669 3929 1.202521 GGGCCCAACTTGTCAGTTTTG 60.203 52.381 19.95 0.00 40.66 2.44
3670 3930 1.119684 GGGCCCAACTTGTCAGTTTT 58.880 50.000 19.95 0.00 40.66 2.43
3671 3931 0.032615 TGGGCCCAACTTGTCAGTTT 60.033 50.000 26.33 0.00 40.66 2.66
3672 3932 0.755327 GTGGGCCCAACTTGTCAGTT 60.755 55.000 30.64 0.00 44.72 3.16
3673 3933 1.152756 GTGGGCCCAACTTGTCAGT 60.153 57.895 30.64 0.00 33.11 3.41
3674 3934 0.468029 AAGTGGGCCCAACTTGTCAG 60.468 55.000 30.64 0.00 0.00 3.51
3675 3935 0.754957 CAAGTGGGCCCAACTTGTCA 60.755 55.000 35.35 13.06 36.89 3.58
3676 3936 2.041153 CAAGTGGGCCCAACTTGTC 58.959 57.895 35.35 22.96 36.89 3.18
3677 3937 1.309688 ACAAGTGGGCCCAACTTGT 59.690 52.632 39.27 39.27 46.16 3.16
3678 3938 1.795170 CGACAAGTGGGCCCAACTTG 61.795 60.000 38.39 38.39 44.43 3.16
3679 3939 1.528309 CGACAAGTGGGCCCAACTT 60.528 57.895 30.64 27.21 0.00 2.66
3680 3940 2.113139 CGACAAGTGGGCCCAACT 59.887 61.111 30.64 22.99 0.00 3.16
3681 3941 2.983592 CCGACAAGTGGGCCCAAC 60.984 66.667 30.64 20.95 0.00 3.77
3682 3942 4.278513 CCCGACAAGTGGGCCCAA 62.279 66.667 30.64 8.18 40.47 4.12
3688 3948 2.738521 CGTCAGCCCGACAAGTGG 60.739 66.667 4.88 0.00 45.70 4.00
3689 3949 2.029073 ACGTCAGCCCGACAAGTG 59.971 61.111 4.88 0.00 45.70 3.16
3690 3950 2.029073 CACGTCAGCCCGACAAGT 59.971 61.111 4.88 0.00 45.70 3.16
3691 3951 2.738521 CCACGTCAGCCCGACAAG 60.739 66.667 4.88 0.00 45.70 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.