Multiple sequence alignment - TraesCS3D01G453100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G453100 chr3D 100.000 4934 0 0 1 4934 560316969 560321902 0.000000e+00 9112.0
1 TraesCS3D01G453100 chr3A 92.268 3272 165 34 894 4119 628697949 628701178 0.000000e+00 4560.0
2 TraesCS3D01G453100 chr3A 92.611 3221 149 39 948 4119 629054177 629050997 0.000000e+00 4547.0
3 TraesCS3D01G453100 chr3A 95.433 416 18 1 3705 4119 629048352 629047937 0.000000e+00 662.0
4 TraesCS3D01G453100 chr3A 88.814 295 22 7 434 722 628697460 628697749 7.860000e-93 351.0
5 TraesCS3D01G453100 chr3A 83.575 207 13 5 163 369 628695353 628695538 1.830000e-39 174.0
6 TraesCS3D01G453100 chr3A 87.413 143 3 5 434 576 629054310 629054183 3.080000e-32 150.0
7 TraesCS3D01G453100 chr3A 100.000 44 0 0 379 422 628697348 628697391 1.140000e-11 82.4
8 TraesCS3D01G453100 chr3B 91.363 2941 130 43 1234 4119 746877983 746875112 0.000000e+00 3910.0
9 TraesCS3D01G453100 chr3B 88.936 2594 137 50 615 3109 744577548 744580090 0.000000e+00 3062.0
10 TraesCS3D01G453100 chr3B 91.929 1016 49 14 3118 4119 744579831 744580827 0.000000e+00 1391.0
11 TraesCS3D01G453100 chr3B 86.177 586 33 17 615 1167 746879520 746878950 1.530000e-164 590.0
12 TraesCS3D01G453100 chr5A 81.450 593 50 26 4269 4825 709755020 709755588 9.810000e-117 431.0
13 TraesCS3D01G453100 chr4D 76.391 809 140 29 4171 4934 452793279 452794081 5.990000e-104 388.0
14 TraesCS3D01G453100 chrUn 81.621 506 44 23 4169 4633 162972851 162972354 1.680000e-99 374.0
15 TraesCS3D01G453100 chrUn 81.621 506 44 23 4169 4633 163013070 163012573 1.680000e-99 374.0
16 TraesCS3D01G453100 chrUn 81.621 506 44 23 4169 4633 402046632 402047129 1.680000e-99 374.0
17 TraesCS3D01G453100 chrUn 81.423 506 45 23 4169 4633 162945294 162944797 7.800000e-98 368.0
18 TraesCS3D01G453100 chrUn 81.713 432 33 22 4242 4633 163033169 163032744 7.970000e-83 318.0
19 TraesCS3D01G453100 chrUn 85.714 140 16 2 4169 4307 430926517 430926653 1.430000e-30 145.0
20 TraesCS3D01G453100 chrUn 79.724 217 21 9 4169 4369 309716762 309716553 8.620000e-28 135.0
21 TraesCS3D01G453100 chr7D 79.912 453 89 2 4465 4916 2859039 2859490 1.020000e-86 331.0
22 TraesCS3D01G453100 chr7D 74.531 852 153 38 4107 4898 635506169 635507016 3.710000e-81 313.0
23 TraesCS3D01G453100 chr5D 93.617 94 6 0 4273 4366 40958430 40958337 1.850000e-29 141.0
24 TraesCS3D01G453100 chr2B 79.724 217 21 9 4169 4369 41094003 41093794 8.620000e-28 135.0
25 TraesCS3D01G453100 chr7A 91.489 47 4 0 2484 2530 11033034 11033080 1.150000e-06 65.8
26 TraesCS3D01G453100 chr6D 100.000 29 0 0 56 84 82965178 82965150 2.000000e-03 54.7
27 TraesCS3D01G453100 chr6D 100.000 28 0 0 56 83 82969763 82969736 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G453100 chr3D 560316969 560321902 4933 False 9112.000000 9112 100.00000 1 4934 1 chr3D.!!$F1 4933
1 TraesCS3D01G453100 chr3A 629047937 629054310 6373 True 1786.333333 4547 91.81900 434 4119 3 chr3A.!!$R1 3685
2 TraesCS3D01G453100 chr3A 628695353 628701178 5825 False 1291.850000 4560 91.16425 163 4119 4 chr3A.!!$F1 3956
3 TraesCS3D01G453100 chr3B 746875112 746879520 4408 True 2250.000000 3910 88.77000 615 4119 2 chr3B.!!$R1 3504
4 TraesCS3D01G453100 chr3B 744577548 744580827 3279 False 2226.500000 3062 90.43250 615 4119 2 chr3B.!!$F1 3504
5 TraesCS3D01G453100 chr5A 709755020 709755588 568 False 431.000000 431 81.45000 4269 4825 1 chr5A.!!$F1 556
6 TraesCS3D01G453100 chr4D 452793279 452794081 802 False 388.000000 388 76.39100 4171 4934 1 chr4D.!!$F1 763
7 TraesCS3D01G453100 chr7D 635506169 635507016 847 False 313.000000 313 74.53100 4107 4898 1 chr7D.!!$F2 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.447801 ATCGCTGCCAATTCGTGTTC 59.552 50.0 0.00 0.00 0.00 3.18 F
537 2395 0.617820 CCTCCTCTCCCCGGAAAAGA 60.618 60.0 0.73 1.09 0.00 2.52 F
1493 4436 0.251354 TTCAGGTCTCAGGAGCATGC 59.749 55.0 10.51 10.51 41.89 4.06 F
1710 4653 0.178068 ACACGTATCCTCATGTGGGC 59.822 55.0 13.71 4.35 39.33 5.36 F
2167 5142 0.732880 CTACGCCAGAAGACACGTGG 60.733 60.0 21.57 0.31 39.43 4.94 F
2837 5825 0.951040 GTGGTCAGCTGTACCTGCAC 60.951 60.0 25.75 16.85 37.91 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1125 3087 0.609131 AACGAGCCCCCATTGACAAG 60.609 55.000 0.00 0.00 0.00 3.16 R
1695 4638 1.071471 CCCGCCCACATGAGGATAC 59.929 63.158 11.19 0.00 0.00 2.24 R
2570 5551 0.603569 ACACGAAGCACTCCAGGTAG 59.396 55.000 0.00 0.00 0.00 3.18 R
3378 6382 1.065926 CAGCCATAGCAGTGACCTTCA 60.066 52.381 0.00 0.00 43.56 3.02 R
3493 6497 2.256117 TCCATAGTCTCTGCGATCGA 57.744 50.000 21.57 3.01 0.00 3.59 R
4370 10456 0.035458 AAAGGAGAAGGCACTGACGG 59.965 55.000 0.00 0.00 40.86 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.190920 CGTTTTGAGTCTTTATTTGTCCTCT 57.809 36.000 0.00 0.00 0.00 3.69
25 26 8.306680 CGTTTTGAGTCTTTATTTGTCCTCTA 57.693 34.615 0.00 0.00 0.00 2.43
26 27 8.936864 CGTTTTGAGTCTTTATTTGTCCTCTAT 58.063 33.333 0.00 0.00 0.00 1.98
28 29 7.849804 TTGAGTCTTTATTTGTCCTCTATGC 57.150 36.000 0.00 0.00 0.00 3.14
29 30 6.946340 TGAGTCTTTATTTGTCCTCTATGCA 58.054 36.000 0.00 0.00 0.00 3.96
30 31 7.044181 TGAGTCTTTATTTGTCCTCTATGCAG 58.956 38.462 0.00 0.00 0.00 4.41
31 32 6.951971 AGTCTTTATTTGTCCTCTATGCAGT 58.048 36.000 0.00 0.00 0.00 4.40
32 33 7.044798 AGTCTTTATTTGTCCTCTATGCAGTC 58.955 38.462 0.00 0.00 0.00 3.51
33 34 6.818644 GTCTTTATTTGTCCTCTATGCAGTCA 59.181 38.462 0.00 0.00 0.00 3.41
34 35 7.497249 GTCTTTATTTGTCCTCTATGCAGTCAT 59.503 37.037 0.00 0.00 36.73 3.06
35 36 8.704668 TCTTTATTTGTCCTCTATGCAGTCATA 58.295 33.333 0.00 0.00 34.22 2.15
36 37 8.662781 TTTATTTGTCCTCTATGCAGTCATAC 57.337 34.615 0.00 0.00 34.22 2.39
37 38 5.939764 TTTGTCCTCTATGCAGTCATACT 57.060 39.130 0.00 0.00 34.22 2.12
38 39 5.521906 TTGTCCTCTATGCAGTCATACTC 57.478 43.478 0.00 0.00 34.22 2.59
39 40 4.797743 TGTCCTCTATGCAGTCATACTCT 58.202 43.478 0.00 0.00 34.22 3.24
40 41 5.204292 TGTCCTCTATGCAGTCATACTCTT 58.796 41.667 0.00 0.00 34.22 2.85
41 42 5.658634 TGTCCTCTATGCAGTCATACTCTTT 59.341 40.000 0.00 0.00 34.22 2.52
42 43 6.833933 TGTCCTCTATGCAGTCATACTCTTTA 59.166 38.462 0.00 0.00 34.22 1.85
43 44 7.507277 TGTCCTCTATGCAGTCATACTCTTTAT 59.493 37.037 0.00 0.00 34.22 1.40
44 45 8.364142 GTCCTCTATGCAGTCATACTCTTTATT 58.636 37.037 0.00 0.00 34.22 1.40
45 46 8.928448 TCCTCTATGCAGTCATACTCTTTATTT 58.072 33.333 0.00 0.00 34.22 1.40
46 47 9.202273 CCTCTATGCAGTCATACTCTTTATTTC 57.798 37.037 0.00 0.00 34.22 2.17
47 48 9.755804 CTCTATGCAGTCATACTCTTTATTTCA 57.244 33.333 0.00 0.00 34.22 2.69
48 49 9.534565 TCTATGCAGTCATACTCTTTATTTCAC 57.465 33.333 0.00 0.00 34.22 3.18
49 50 6.985188 TGCAGTCATACTCTTTATTTCACC 57.015 37.500 0.00 0.00 0.00 4.02
50 51 5.880332 TGCAGTCATACTCTTTATTTCACCC 59.120 40.000 0.00 0.00 0.00 4.61
51 52 5.006746 GCAGTCATACTCTTTATTTCACCCG 59.993 44.000 0.00 0.00 0.00 5.28
52 53 5.006746 CAGTCATACTCTTTATTTCACCCGC 59.993 44.000 0.00 0.00 0.00 6.13
53 54 4.873827 GTCATACTCTTTATTTCACCCGCA 59.126 41.667 0.00 0.00 0.00 5.69
54 55 4.873827 TCATACTCTTTATTTCACCCGCAC 59.126 41.667 0.00 0.00 0.00 5.34
55 56 3.134574 ACTCTTTATTTCACCCGCACA 57.865 42.857 0.00 0.00 0.00 4.57
56 57 3.686016 ACTCTTTATTTCACCCGCACAT 58.314 40.909 0.00 0.00 0.00 3.21
57 58 4.839121 ACTCTTTATTTCACCCGCACATA 58.161 39.130 0.00 0.00 0.00 2.29
58 59 5.250200 ACTCTTTATTTCACCCGCACATAA 58.750 37.500 0.00 0.00 0.00 1.90
59 60 5.885912 ACTCTTTATTTCACCCGCACATAAT 59.114 36.000 0.00 0.00 0.00 1.28
60 61 7.051623 ACTCTTTATTTCACCCGCACATAATA 58.948 34.615 0.00 0.00 0.00 0.98
61 62 7.719633 ACTCTTTATTTCACCCGCACATAATAT 59.280 33.333 0.00 0.00 0.00 1.28
62 63 8.094798 TCTTTATTTCACCCGCACATAATATC 57.905 34.615 0.00 0.00 0.00 1.63
63 64 7.717436 TCTTTATTTCACCCGCACATAATATCA 59.283 33.333 0.00 0.00 0.00 2.15
64 65 7.809546 TTATTTCACCCGCACATAATATCAA 57.190 32.000 0.00 0.00 0.00 2.57
65 66 5.749596 TTTCACCCGCACATAATATCAAG 57.250 39.130 0.00 0.00 0.00 3.02
66 67 4.415881 TCACCCGCACATAATATCAAGT 57.584 40.909 0.00 0.00 0.00 3.16
67 68 4.776349 TCACCCGCACATAATATCAAGTT 58.224 39.130 0.00 0.00 0.00 2.66
68 69 4.574421 TCACCCGCACATAATATCAAGTTG 59.426 41.667 0.00 0.00 0.00 3.16
69 70 3.315191 ACCCGCACATAATATCAAGTTGC 59.685 43.478 0.00 0.00 0.00 4.17
70 71 3.565482 CCCGCACATAATATCAAGTTGCT 59.435 43.478 0.00 0.00 0.00 3.91
71 72 4.754618 CCCGCACATAATATCAAGTTGCTA 59.245 41.667 0.00 0.00 0.00 3.49
72 73 5.412594 CCCGCACATAATATCAAGTTGCTAT 59.587 40.000 0.00 0.00 0.00 2.97
73 74 6.072508 CCCGCACATAATATCAAGTTGCTATT 60.073 38.462 14.55 14.55 0.00 1.73
74 75 7.362662 CCGCACATAATATCAAGTTGCTATTT 58.637 34.615 15.17 3.80 0.00 1.40
75 76 7.535258 CCGCACATAATATCAAGTTGCTATTTC 59.465 37.037 15.17 2.96 0.00 2.17
76 77 8.285394 CGCACATAATATCAAGTTGCTATTTCT 58.715 33.333 15.17 3.76 0.00 2.52
77 78 9.604626 GCACATAATATCAAGTTGCTATTTCTC 57.395 33.333 15.17 1.34 0.00 2.87
84 85 7.617041 ATCAAGTTGCTATTTCTCTAACACC 57.383 36.000 0.00 0.00 0.00 4.16
85 86 5.938125 TCAAGTTGCTATTTCTCTAACACCC 59.062 40.000 0.00 0.00 0.00 4.61
86 87 5.499004 AGTTGCTATTTCTCTAACACCCA 57.501 39.130 0.00 0.00 0.00 4.51
87 88 5.876357 AGTTGCTATTTCTCTAACACCCAA 58.124 37.500 0.00 0.00 0.00 4.12
88 89 5.705905 AGTTGCTATTTCTCTAACACCCAAC 59.294 40.000 0.00 0.00 0.00 3.77
89 90 5.235850 TGCTATTTCTCTAACACCCAACA 57.764 39.130 0.00 0.00 0.00 3.33
90 91 5.626142 TGCTATTTCTCTAACACCCAACAA 58.374 37.500 0.00 0.00 0.00 2.83
91 92 6.065374 TGCTATTTCTCTAACACCCAACAAA 58.935 36.000 0.00 0.00 0.00 2.83
92 93 6.719370 TGCTATTTCTCTAACACCCAACAAAT 59.281 34.615 0.00 0.00 0.00 2.32
93 94 7.029563 GCTATTTCTCTAACACCCAACAAATG 58.970 38.462 0.00 0.00 0.00 2.32
94 95 7.094377 GCTATTTCTCTAACACCCAACAAATGA 60.094 37.037 0.00 0.00 0.00 2.57
95 96 7.781324 ATTTCTCTAACACCCAACAAATGAT 57.219 32.000 0.00 0.00 0.00 2.45
96 97 6.817765 TTCTCTAACACCCAACAAATGATC 57.182 37.500 0.00 0.00 0.00 2.92
97 98 4.935205 TCTCTAACACCCAACAAATGATCG 59.065 41.667 0.00 0.00 0.00 3.69
98 99 2.723124 AACACCCAACAAATGATCGC 57.277 45.000 0.00 0.00 0.00 4.58
99 100 0.887933 ACACCCAACAAATGATCGCC 59.112 50.000 0.00 0.00 0.00 5.54
100 101 0.887247 CACCCAACAAATGATCGCCA 59.113 50.000 0.00 0.00 0.00 5.69
101 102 1.135315 CACCCAACAAATGATCGCCAG 60.135 52.381 0.00 0.00 0.00 4.85
102 103 1.176527 CCCAACAAATGATCGCCAGT 58.823 50.000 0.00 0.00 0.00 4.00
103 104 1.545582 CCCAACAAATGATCGCCAGTT 59.454 47.619 0.00 0.00 32.67 3.16
104 105 2.752354 CCCAACAAATGATCGCCAGTTA 59.248 45.455 0.00 0.00 31.11 2.24
105 106 3.192422 CCCAACAAATGATCGCCAGTTAA 59.808 43.478 0.00 0.00 31.11 2.01
106 107 4.321601 CCCAACAAATGATCGCCAGTTAAA 60.322 41.667 0.00 0.00 31.11 1.52
107 108 5.410067 CCAACAAATGATCGCCAGTTAAAT 58.590 37.500 0.00 0.00 31.11 1.40
108 109 6.405286 CCCAACAAATGATCGCCAGTTAAATA 60.405 38.462 0.00 0.00 31.11 1.40
109 110 7.032580 CCAACAAATGATCGCCAGTTAAATAA 58.967 34.615 0.00 0.00 31.11 1.40
110 111 7.543868 CCAACAAATGATCGCCAGTTAAATAAA 59.456 33.333 0.00 0.00 31.11 1.40
111 112 8.920665 CAACAAATGATCGCCAGTTAAATAAAA 58.079 29.630 0.00 0.00 31.11 1.52
112 113 8.687824 ACAAATGATCGCCAGTTAAATAAAAG 57.312 30.769 0.00 0.00 31.11 2.27
113 114 7.759433 ACAAATGATCGCCAGTTAAATAAAAGG 59.241 33.333 0.00 0.00 31.11 3.11
114 115 5.828299 TGATCGCCAGTTAAATAAAAGGG 57.172 39.130 0.00 0.00 0.00 3.95
115 116 5.258051 TGATCGCCAGTTAAATAAAAGGGT 58.742 37.500 0.00 0.00 0.00 4.34
116 117 5.355910 TGATCGCCAGTTAAATAAAAGGGTC 59.644 40.000 0.00 0.00 0.00 4.46
117 118 4.011698 TCGCCAGTTAAATAAAAGGGTCC 58.988 43.478 0.00 0.00 0.00 4.46
118 119 3.759618 CGCCAGTTAAATAAAAGGGTCCA 59.240 43.478 0.00 0.00 0.00 4.02
119 120 4.218852 CGCCAGTTAAATAAAAGGGTCCAA 59.781 41.667 0.00 0.00 0.00 3.53
120 121 5.279056 CGCCAGTTAAATAAAAGGGTCCAAA 60.279 40.000 0.00 0.00 0.00 3.28
121 122 6.163476 GCCAGTTAAATAAAAGGGTCCAAAG 58.837 40.000 0.00 0.00 0.00 2.77
122 123 6.239487 GCCAGTTAAATAAAAGGGTCCAAAGT 60.239 38.462 0.00 0.00 0.00 2.66
123 124 7.039574 GCCAGTTAAATAAAAGGGTCCAAAGTA 60.040 37.037 0.00 0.00 0.00 2.24
124 125 8.862085 CCAGTTAAATAAAAGGGTCCAAAGTAA 58.138 33.333 0.00 0.00 0.00 2.24
129 130 4.514781 AAAAGGGTCCAAAGTAAATCGC 57.485 40.909 0.00 0.00 0.00 4.58
130 131 3.434940 AAGGGTCCAAAGTAAATCGCT 57.565 42.857 0.00 0.00 0.00 4.93
131 132 2.711542 AGGGTCCAAAGTAAATCGCTG 58.288 47.619 0.00 0.00 0.00 5.18
132 133 1.132453 GGGTCCAAAGTAAATCGCTGC 59.868 52.381 0.00 0.00 0.00 5.25
133 134 1.132453 GGTCCAAAGTAAATCGCTGCC 59.868 52.381 0.00 0.00 0.00 4.85
134 135 1.810151 GTCCAAAGTAAATCGCTGCCA 59.190 47.619 0.00 0.00 0.00 4.92
135 136 2.227865 GTCCAAAGTAAATCGCTGCCAA 59.772 45.455 0.00 0.00 0.00 4.52
136 137 3.088532 TCCAAAGTAAATCGCTGCCAAT 58.911 40.909 0.00 0.00 0.00 3.16
137 138 3.509575 TCCAAAGTAAATCGCTGCCAATT 59.490 39.130 0.00 0.00 0.00 2.32
138 139 3.859386 CCAAAGTAAATCGCTGCCAATTC 59.141 43.478 0.00 0.00 0.00 2.17
139 140 3.405170 AAGTAAATCGCTGCCAATTCG 57.595 42.857 0.00 0.00 0.00 3.34
140 141 2.356135 AGTAAATCGCTGCCAATTCGT 58.644 42.857 0.00 0.00 0.00 3.85
141 142 2.095853 AGTAAATCGCTGCCAATTCGTG 59.904 45.455 0.00 0.00 0.00 4.35
142 143 0.881118 AAATCGCTGCCAATTCGTGT 59.119 45.000 0.00 0.00 0.00 4.49
143 144 0.881118 AATCGCTGCCAATTCGTGTT 59.119 45.000 0.00 0.00 0.00 3.32
144 145 0.447801 ATCGCTGCCAATTCGTGTTC 59.552 50.000 0.00 0.00 0.00 3.18
145 146 1.509787 CGCTGCCAATTCGTGTTCG 60.510 57.895 0.00 0.00 38.55 3.95
146 147 1.574428 GCTGCCAATTCGTGTTCGT 59.426 52.632 0.00 0.00 38.33 3.85
147 148 0.725784 GCTGCCAATTCGTGTTCGTG 60.726 55.000 0.00 0.00 38.33 4.35
148 149 0.865111 CTGCCAATTCGTGTTCGTGA 59.135 50.000 0.00 0.00 38.33 4.35
149 150 1.262950 CTGCCAATTCGTGTTCGTGAA 59.737 47.619 0.00 0.00 38.33 3.18
150 151 1.262950 TGCCAATTCGTGTTCGTGAAG 59.737 47.619 0.00 0.00 38.33 3.02
151 152 1.399727 GCCAATTCGTGTTCGTGAAGG 60.400 52.381 0.00 0.00 38.33 3.46
152 153 2.139917 CCAATTCGTGTTCGTGAAGGA 58.860 47.619 0.00 0.00 38.33 3.36
153 154 2.546368 CCAATTCGTGTTCGTGAAGGAA 59.454 45.455 0.00 0.00 38.33 3.36
154 155 3.541711 CAATTCGTGTTCGTGAAGGAAC 58.458 45.455 8.56 8.56 45.10 3.62
160 161 2.924432 GTTCGTGAAGGAACGTGAAG 57.076 50.000 0.00 0.00 43.96 3.02
161 162 2.199236 GTTCGTGAAGGAACGTGAAGT 58.801 47.619 0.00 0.00 43.96 3.01
183 184 3.767806 GAACCGACCCGACCCCTC 61.768 72.222 0.00 0.00 0.00 4.30
192 193 0.778720 CCCGACCCCTCCTCTATACT 59.221 60.000 0.00 0.00 0.00 2.12
193 194 1.991070 CCCGACCCCTCCTCTATACTA 59.009 57.143 0.00 0.00 0.00 1.82
196 197 3.010361 CCGACCCCTCCTCTATACTACAT 59.990 52.174 0.00 0.00 0.00 2.29
199 200 5.000570 ACCCCTCCTCTATACTACATCAC 57.999 47.826 0.00 0.00 0.00 3.06
205 206 3.757493 CCTCTATACTACATCACGTCCCC 59.243 52.174 0.00 0.00 0.00 4.81
276 277 1.066152 GGAAGCATTGGAGCGATTTCC 59.934 52.381 0.00 0.00 40.15 3.13
286 287 2.079925 GAGCGATTTCCATATCCTGCC 58.920 52.381 0.00 0.00 0.00 4.85
287 288 1.701847 AGCGATTTCCATATCCTGCCT 59.298 47.619 0.00 0.00 0.00 4.75
288 289 2.079925 GCGATTTCCATATCCTGCCTC 58.920 52.381 0.00 0.00 0.00 4.70
289 290 2.341257 CGATTTCCATATCCTGCCTCG 58.659 52.381 0.00 0.00 0.00 4.63
290 291 2.029020 CGATTTCCATATCCTGCCTCGA 60.029 50.000 0.00 0.00 0.00 4.04
291 292 3.368843 CGATTTCCATATCCTGCCTCGAT 60.369 47.826 0.00 0.00 0.00 3.59
313 314 4.713553 TCTCGATGTAAGCATCTCTCTCT 58.286 43.478 6.11 0.00 46.96 3.10
314 315 4.754618 TCTCGATGTAAGCATCTCTCTCTC 59.245 45.833 6.11 0.00 46.96 3.20
315 316 4.713553 TCGATGTAAGCATCTCTCTCTCT 58.286 43.478 6.11 0.00 46.96 3.10
316 317 4.754618 TCGATGTAAGCATCTCTCTCTCTC 59.245 45.833 6.11 0.00 46.96 3.20
317 318 4.756642 CGATGTAAGCATCTCTCTCTCTCT 59.243 45.833 6.11 0.00 46.96 3.10
318 319 5.106948 CGATGTAAGCATCTCTCTCTCTCTC 60.107 48.000 6.11 0.00 46.96 3.20
319 320 5.372343 TGTAAGCATCTCTCTCTCTCTCT 57.628 43.478 0.00 0.00 0.00 3.10
320 321 5.368145 TGTAAGCATCTCTCTCTCTCTCTC 58.632 45.833 0.00 0.00 0.00 3.20
321 322 4.785346 AAGCATCTCTCTCTCTCTCTCT 57.215 45.455 0.00 0.00 0.00 3.10
322 323 4.348863 AGCATCTCTCTCTCTCTCTCTC 57.651 50.000 0.00 0.00 0.00 3.20
323 324 3.972638 AGCATCTCTCTCTCTCTCTCTCT 59.027 47.826 0.00 0.00 0.00 3.10
324 325 4.040217 AGCATCTCTCTCTCTCTCTCTCTC 59.960 50.000 0.00 0.00 0.00 3.20
344 345 2.390599 CCGGCATTGTCACCAGTCG 61.391 63.158 0.00 0.00 0.00 4.18
346 347 2.476051 GCATTGTCACCAGTCGCG 59.524 61.111 0.00 0.00 0.00 5.87
369 370 3.311106 CCGCCGTTGATACGTATTGTAT 58.689 45.455 9.92 0.00 46.51 2.29
371 372 4.375606 CCGCCGTTGATACGTATTGTATTG 60.376 45.833 9.92 0.00 43.87 1.90
372 373 4.207635 CGCCGTTGATACGTATTGTATTGT 59.792 41.667 9.92 0.00 43.87 2.71
373 374 5.608843 CGCCGTTGATACGTATTGTATTGTC 60.609 44.000 9.92 0.00 43.87 3.18
374 375 5.232626 GCCGTTGATACGTATTGTATTGTCA 59.767 40.000 9.92 0.00 43.87 3.58
375 376 6.073980 GCCGTTGATACGTATTGTATTGTCAT 60.074 38.462 9.92 0.00 43.87 3.06
376 377 7.499046 CCGTTGATACGTATTGTATTGTCATC 58.501 38.462 9.92 0.22 43.87 2.92
377 378 7.168469 CCGTTGATACGTATTGTATTGTCATCA 59.832 37.037 9.92 0.00 43.87 3.07
426 2227 3.133464 CCATGGATGGCGTTGCGT 61.133 61.111 5.56 0.00 41.75 5.24
427 2228 2.699768 CCATGGATGGCGTTGCGTT 61.700 57.895 5.56 0.00 41.75 4.84
428 2229 1.514657 CATGGATGGCGTTGCGTTG 60.515 57.895 0.00 0.00 0.00 4.10
429 2230 2.699768 ATGGATGGCGTTGCGTTGG 61.700 57.895 0.00 0.00 0.00 3.77
430 2231 3.053291 GGATGGCGTTGCGTTGGA 61.053 61.111 0.00 0.00 0.00 3.53
431 2232 2.480555 GATGGCGTTGCGTTGGAG 59.519 61.111 0.00 0.00 0.00 3.86
432 2233 3.039202 GATGGCGTTGCGTTGGAGG 62.039 63.158 0.00 0.00 0.00 4.30
462 2320 5.235186 GTGTGTATGTATCCTGATGACAAGC 59.765 44.000 0.00 0.00 0.00 4.01
536 2394 1.627297 CCCTCCTCTCCCCGGAAAAG 61.627 65.000 0.73 0.00 0.00 2.27
537 2395 0.617820 CCTCCTCTCCCCGGAAAAGA 60.618 60.000 0.73 1.09 0.00 2.52
538 2396 1.276622 CTCCTCTCCCCGGAAAAGAA 58.723 55.000 0.73 0.00 0.00 2.52
539 2397 1.628846 CTCCTCTCCCCGGAAAAGAAA 59.371 52.381 0.73 0.00 0.00 2.52
663 2521 4.719369 GAGCAAGCGGGTCGACGT 62.719 66.667 9.92 0.00 33.78 4.34
664 2522 3.332493 GAGCAAGCGGGTCGACGTA 62.332 63.158 9.92 0.00 33.78 3.57
665 2523 3.177249 GCAAGCGGGTCGACGTAC 61.177 66.667 9.92 0.55 35.98 3.67
666 2524 2.872925 CAAGCGGGTCGACGTACG 60.873 66.667 15.01 15.01 44.09 3.67
753 2620 2.232941 GGACAAGTCCTGGTATGAACGA 59.767 50.000 11.94 0.00 46.16 3.85
761 2628 3.613702 GTATGAACGACGCCGCCG 61.614 66.667 0.00 0.00 39.95 6.46
824 2691 3.452755 TCTGATATGTGCGTCGGATTT 57.547 42.857 0.00 0.00 0.00 2.17
1113 3075 9.758651 ATATCATCATCATGTTTTGTCCAAATG 57.241 29.630 0.00 0.00 0.00 2.32
1157 3129 0.438830 GCTCGTTGCTTCGATCGTTT 59.561 50.000 15.94 0.00 39.12 3.60
1176 3153 2.178912 TGTCGTTGGAGATTTGGGAC 57.821 50.000 0.00 0.00 0.00 4.46
1222 3209 2.552743 GTTGGTTTGGTACTCTTCCTGC 59.447 50.000 0.00 0.00 0.00 4.85
1459 4402 8.767478 AAGATAATTTTGTTTTGCTCATCCAG 57.233 30.769 0.00 0.00 0.00 3.86
1493 4436 0.251354 TTCAGGTCTCAGGAGCATGC 59.749 55.000 10.51 10.51 41.89 4.06
1494 4437 0.906282 TCAGGTCTCAGGAGCATGCA 60.906 55.000 21.98 0.00 41.89 3.96
1550 4493 2.827604 ACGCCTCGTCATCAAACAG 58.172 52.632 0.00 0.00 33.69 3.16
1600 4543 2.436646 CCATCACTGCCACGTCCC 60.437 66.667 0.00 0.00 0.00 4.46
1610 4553 3.812019 CACGTCCCCGTCCTCTCG 61.812 72.222 0.00 0.00 46.28 4.04
1710 4653 0.178068 ACACGTATCCTCATGTGGGC 59.822 55.000 13.71 4.35 39.33 5.36
1797 4740 7.518370 CGGGATCCAATAATGTAAACTTTCTCG 60.518 40.741 15.23 0.00 0.00 4.04
1917 4880 2.637872 AGGAGAAGAACGAATGAACCCA 59.362 45.455 0.00 0.00 0.00 4.51
1931 4894 8.483758 ACGAATGAACCCAAGTTAGATTATAGT 58.516 33.333 0.00 0.00 35.94 2.12
1957 4920 5.895636 TTTGGTACTTTCATGCATACAGG 57.104 39.130 0.00 0.00 0.00 4.00
2069 5035 2.557056 AGAGTTGCTGAAGTAGTGCGTA 59.443 45.455 0.00 0.00 0.00 4.42
2076 5042 6.160664 TGCTGAAGTAGTGCGTAAAATTAC 57.839 37.500 0.00 0.00 0.00 1.89
2077 5043 5.697178 TGCTGAAGTAGTGCGTAAAATTACA 59.303 36.000 4.37 0.00 33.28 2.41
2078 5044 6.370442 TGCTGAAGTAGTGCGTAAAATTACAT 59.630 34.615 4.37 0.00 33.28 2.29
2079 5045 7.546316 TGCTGAAGTAGTGCGTAAAATTACATA 59.454 33.333 4.37 0.00 33.28 2.29
2080 5046 8.056571 GCTGAAGTAGTGCGTAAAATTACATAG 58.943 37.037 4.37 0.00 33.28 2.23
2081 5047 9.297586 CTGAAGTAGTGCGTAAAATTACATAGA 57.702 33.333 4.37 0.00 33.28 1.98
2082 5048 9.811995 TGAAGTAGTGCGTAAAATTACATAGAT 57.188 29.630 4.37 0.00 33.28 1.98
2084 5050 8.073355 AGTAGTGCGTAAAATTACATAGATGC 57.927 34.615 4.37 0.00 33.28 3.91
2119 5090 9.825972 CACTTTGTAATTTTGTATGTAGGTCTG 57.174 33.333 0.00 0.00 0.00 3.51
2128 5099 6.774354 TTGTATGTAGGTCTGTTTCGTTTC 57.226 37.500 0.00 0.00 0.00 2.78
2132 5103 2.320745 AGGTCTGTTTCGTTTCCGTT 57.679 45.000 0.00 0.00 35.01 4.44
2167 5142 0.732880 CTACGCCAGAAGACACGTGG 60.733 60.000 21.57 0.31 39.43 4.94
2197 5173 7.235079 TGTTTGATCCTTGTTAACCAATCCTA 58.765 34.615 2.48 0.00 31.20 2.94
2220 5196 7.387948 CCTACATGCATACTATTTGTCCCTAAC 59.612 40.741 0.00 0.00 0.00 2.34
2229 5205 7.766736 ACTATTTGTCCCTAACCCTATTTCT 57.233 36.000 0.00 0.00 0.00 2.52
2289 5269 3.680642 CACTCCACTGTTGTGAAAGTG 57.319 47.619 13.13 13.13 46.55 3.16
2333 5314 6.183360 GGAATCTCTGATCTAAACTAGGTGCA 60.183 42.308 0.00 0.00 0.00 4.57
2570 5551 5.525378 CCTGTCCTTACTCTTTATCATGCAC 59.475 44.000 0.00 0.00 0.00 4.57
2814 5802 3.596214 ACGTATGCCAGAAGACGAAAAT 58.404 40.909 0.00 0.00 38.63 1.82
2837 5825 0.951040 GTGGTCAGCTGTACCTGCAC 60.951 60.000 25.75 16.85 37.91 4.57
2896 5884 6.834959 ATCAAGTGTCGCTGAAATATAGTG 57.165 37.500 0.00 0.00 0.00 2.74
2941 5929 7.492352 ACCGTATTTTTACTCTTATCATGGC 57.508 36.000 0.00 0.00 0.00 4.40
3006 5995 9.807649 ATCCTTTTGCATTGTAATATCTCAAAC 57.192 29.630 0.00 0.00 0.00 2.93
3142 6137 5.446340 GGTTGATCGTTTTGATAACGGTACC 60.446 44.000 0.16 0.16 43.24 3.34
3291 6295 8.024865 TGAACTTTGCATTGTGATATCTCAAAG 58.975 33.333 20.65 17.72 42.45 2.77
3337 6341 9.555727 TGTATTATTACCTTCACTTAATCAGCC 57.444 33.333 0.00 0.00 0.00 4.85
3393 6397 8.635765 TTTCTTTAAATGAAGGTCACTGCTAT 57.364 30.769 0.00 0.00 0.00 2.97
3493 6497 7.964293 AGGGAGAATGTCTTGGACCTAATATAT 59.036 37.037 0.00 0.00 0.00 0.86
3550 6554 9.303116 TGATGTTTTTATTTCCTGGTAAGCTAA 57.697 29.630 0.00 0.00 0.00 3.09
3828 6832 1.067821 GCCACCGATGAGGAAGTAGAG 59.932 57.143 0.00 0.00 45.00 2.43
3958 6962 1.523938 GGATGCTGCCCGGAGTTAC 60.524 63.158 0.73 0.00 0.00 2.50
3975 6979 3.936453 AGTTACGTTGCACTTTCTTGTGA 59.064 39.130 0.00 0.00 40.12 3.58
3979 6983 3.308866 ACGTTGCACTTTCTTGTGACTAC 59.691 43.478 0.00 0.00 40.12 2.73
4094 10158 9.302345 AGATTGACATATGTACGACTTTTACTG 57.698 33.333 8.71 0.00 0.00 2.74
4130 10195 6.368213 CAGTACTTGTTATTTTTGACCGGAC 58.632 40.000 9.46 1.07 0.00 4.79
4132 10197 4.208746 ACTTGTTATTTTTGACCGGACCA 58.791 39.130 9.46 2.07 0.00 4.02
4159 10224 4.218417 GGTGCTCTGCCTTTTCATTTAAGA 59.782 41.667 0.00 0.00 0.00 2.10
4164 10229 6.517362 GCTCTGCCTTTTCATTTAAGAAAGGT 60.517 38.462 13.71 0.00 38.60 3.50
4174 10259 7.687941 TCATTTAAGAAAGGTGGAAAGCTAG 57.312 36.000 0.00 0.00 0.00 3.42
4180 10265 4.844655 AGAAAGGTGGAAAGCTAGTAGGAA 59.155 41.667 0.00 0.00 0.00 3.36
4183 10268 5.167303 AGGTGGAAAGCTAGTAGGAAAAG 57.833 43.478 0.00 0.00 0.00 2.27
4184 10269 3.690139 GGTGGAAAGCTAGTAGGAAAAGC 59.310 47.826 0.00 0.00 36.48 3.51
4186 10271 3.329520 TGGAAAGCTAGTAGGAAAAGCCA 59.670 43.478 0.00 0.00 40.02 4.75
4191 10276 4.986783 AGCTAGTAGGAAAAGCCAAAAGT 58.013 39.130 0.00 0.00 40.02 2.66
4195 10280 7.504574 AGCTAGTAGGAAAAGCCAAAAGTTAAA 59.495 33.333 0.00 0.00 40.02 1.52
4196 10281 7.808381 GCTAGTAGGAAAAGCCAAAAGTTAAAG 59.192 37.037 0.00 0.00 40.02 1.85
4199 10284 8.414003 AGTAGGAAAAGCCAAAAGTTAAAGAAG 58.586 33.333 0.00 0.00 40.02 2.85
4202 10287 8.318412 AGGAAAAGCCAAAAGTTAAAGAAGAAA 58.682 29.630 0.00 0.00 40.02 2.52
4203 10288 8.941977 GGAAAAGCCAAAAGTTAAAGAAGAAAA 58.058 29.630 0.00 0.00 36.34 2.29
4204 10289 9.973246 GAAAAGCCAAAAGTTAAAGAAGAAAAG 57.027 29.630 0.00 0.00 0.00 2.27
4206 10291 9.719355 AAAGCCAAAAGTTAAAGAAGAAAAGAA 57.281 25.926 0.00 0.00 0.00 2.52
4212 10297 9.639601 AAAAGTTAAAGAAGAAAAGAACCAGTG 57.360 29.630 0.00 0.00 0.00 3.66
4219 10304 2.961062 AGAAAAGAACCAGTGCAAGCAT 59.039 40.909 0.00 0.00 0.00 3.79
4220 10305 3.385755 AGAAAAGAACCAGTGCAAGCATT 59.614 39.130 0.00 0.00 0.00 3.56
4233 10318 2.882876 GCATTGTCTGCCTGGCTG 59.117 61.111 21.03 19.66 45.66 4.85
4239 10324 0.692476 TGTCTGCCTGGCTGTACAAT 59.308 50.000 21.03 0.00 0.00 2.71
4241 10326 1.740025 GTCTGCCTGGCTGTACAATTC 59.260 52.381 21.03 2.99 0.00 2.17
4242 10327 1.350684 TCTGCCTGGCTGTACAATTCA 59.649 47.619 21.03 0.00 0.00 2.57
4243 10328 2.161855 CTGCCTGGCTGTACAATTCAA 58.838 47.619 21.03 0.00 0.00 2.69
4244 10329 2.557924 CTGCCTGGCTGTACAATTCAAA 59.442 45.455 21.03 0.00 0.00 2.69
4315 10401 1.226686 CTTCGAGCACAGCTGCACTT 61.227 55.000 15.27 0.00 46.97 3.16
4317 10403 2.952245 GAGCACAGCTGCACTTGG 59.048 61.111 15.27 0.00 46.97 3.61
4324 10410 2.034124 ACAGCTGCACTTGGTTCATTT 58.966 42.857 15.27 0.00 0.00 2.32
4326 10412 2.034124 AGCTGCACTTGGTTCATTTGT 58.966 42.857 1.02 0.00 0.00 2.83
4328 10414 2.540931 GCTGCACTTGGTTCATTTGTTG 59.459 45.455 0.00 0.00 0.00 3.33
4346 10432 8.720562 CATTTGTTGGTTTTTGAAAACTCTTCT 58.279 29.630 16.31 0.00 45.70 2.85
4366 10452 1.673168 ATTTCGCTCATTCCAGAGGC 58.327 50.000 0.00 0.00 36.15 4.70
4369 10455 0.972471 TCGCTCATTCCAGAGGCTCA 60.972 55.000 18.26 0.00 36.15 4.26
4370 10456 0.809241 CGCTCATTCCAGAGGCTCAC 60.809 60.000 18.26 0.00 36.15 3.51
4429 10553 2.352805 CCTCCCACCAGGTTGAGC 59.647 66.667 9.62 0.00 36.75 4.26
4454 10578 2.433446 CTCCTGGCTTGCCAGTGT 59.567 61.111 31.85 0.00 36.18 3.55
4463 10587 0.583438 CTTGCCAGTGTTCTCGTGTG 59.417 55.000 0.00 0.00 0.00 3.82
4479 10603 2.478894 CGTGTGTTGGTATGAAGTCCAC 59.521 50.000 0.00 0.00 33.12 4.02
4517 10645 1.882352 GCAACCGAAGATCAGGTGGTT 60.882 52.381 8.07 7.00 41.21 3.67
4565 10693 6.588719 AGTAGAGCAAGTATCCTGATGATC 57.411 41.667 0.00 0.00 34.76 2.92
4567 10695 4.229639 AGAGCAAGTATCCTGATGATCCA 58.770 43.478 0.00 0.00 34.76 3.41
4590 10718 1.470632 CCTCTCACAAGCAGTCGATCC 60.471 57.143 0.00 0.00 0.00 3.36
4591 10719 1.203287 CTCTCACAAGCAGTCGATCCA 59.797 52.381 0.00 0.00 0.00 3.41
4668 10796 1.419387 ACTCTGAACTTCCAAGCAGCT 59.581 47.619 0.00 0.00 0.00 4.24
4689 10818 1.856629 CAAGGGTGGCATTGGAATCT 58.143 50.000 0.00 0.00 0.00 2.40
4736 10865 1.641123 ATTTTGCCGAGTAACCGCCG 61.641 55.000 0.00 0.00 0.00 6.46
4743 10872 1.495951 GAGTAACCGCCGTTTGCAG 59.504 57.895 0.00 0.00 41.33 4.41
4768 10897 1.527611 TCCAGGCGATCGTATCCGT 60.528 57.895 17.81 0.00 35.01 4.69
4778 10907 0.178767 TCGTATCCGTCTCCGAGGAA 59.821 55.000 0.00 0.00 40.32 3.36
4821 10950 1.071542 TCCACAAGGCAACGAATGAGA 59.928 47.619 0.00 0.00 46.39 3.27
4826 10955 0.976641 AGGCAACGAATGAGACCAGA 59.023 50.000 0.00 0.00 46.39 3.86
4829 10958 2.612972 GGCAACGAATGAGACCAGAAGA 60.613 50.000 0.00 0.00 0.00 2.87
4841 10970 3.055963 AGACCAGAAGATCAGCAGAGTTG 60.056 47.826 0.00 0.00 0.00 3.16
4847 10976 4.395542 AGAAGATCAGCAGAGTTGATTTGC 59.604 41.667 0.00 0.00 35.50 3.68
4868 10997 0.747283 GCAGCCCTCTCATCCAACTG 60.747 60.000 0.00 0.00 0.00 3.16
4872 11001 0.549950 CCCTCTCATCCAACTGCCAT 59.450 55.000 0.00 0.00 0.00 4.40
4877 11006 3.875727 CTCTCATCCAACTGCCATTAGTG 59.124 47.826 0.00 0.00 0.00 2.74
4910 11039 1.446966 GGTCGTGCTCTTGGCTCTC 60.447 63.158 0.00 0.00 42.39 3.20
4919 11048 2.426842 TCTTGGCTCTCGAGAGATGA 57.573 50.000 39.91 27.00 44.74 2.92
4926 11055 3.068024 GGCTCTCGAGAGATGAAACAGAT 59.932 47.826 39.91 0.00 44.74 2.90
4927 11056 4.441356 GGCTCTCGAGAGATGAAACAGATT 60.441 45.833 39.91 0.00 44.74 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.190920 AGAGGACAAATAAAGACTCAAAACG 57.809 36.000 0.00 0.00 0.00 3.60
2 3 8.730680 GCATAGAGGACAAATAAAGACTCAAAA 58.269 33.333 0.00 0.00 0.00 2.44
3 4 7.882791 TGCATAGAGGACAAATAAAGACTCAAA 59.117 33.333 0.00 0.00 0.00 2.69
4 5 7.394016 TGCATAGAGGACAAATAAAGACTCAA 58.606 34.615 0.00 0.00 0.00 3.02
5 6 6.946340 TGCATAGAGGACAAATAAAGACTCA 58.054 36.000 0.00 0.00 0.00 3.41
6 7 7.044798 ACTGCATAGAGGACAAATAAAGACTC 58.955 38.462 0.00 0.00 0.00 3.36
7 8 6.951971 ACTGCATAGAGGACAAATAAAGACT 58.048 36.000 0.00 0.00 0.00 3.24
8 9 6.818644 TGACTGCATAGAGGACAAATAAAGAC 59.181 38.462 0.00 0.00 0.00 3.01
9 10 6.946340 TGACTGCATAGAGGACAAATAAAGA 58.054 36.000 0.00 0.00 0.00 2.52
10 11 7.798596 ATGACTGCATAGAGGACAAATAAAG 57.201 36.000 0.00 0.00 31.57 1.85
11 12 8.486210 AGTATGACTGCATAGAGGACAAATAAA 58.514 33.333 0.00 0.00 37.65 1.40
12 13 8.023021 AGTATGACTGCATAGAGGACAAATAA 57.977 34.615 0.00 0.00 37.65 1.40
13 14 7.507277 AGAGTATGACTGCATAGAGGACAAATA 59.493 37.037 0.00 0.00 37.65 1.40
14 15 6.326064 AGAGTATGACTGCATAGAGGACAAAT 59.674 38.462 0.00 0.00 37.65 2.32
15 16 5.658634 AGAGTATGACTGCATAGAGGACAAA 59.341 40.000 0.00 0.00 37.65 2.83
16 17 5.204292 AGAGTATGACTGCATAGAGGACAA 58.796 41.667 0.00 0.00 37.65 3.18
17 18 4.797743 AGAGTATGACTGCATAGAGGACA 58.202 43.478 0.00 0.00 37.65 4.02
18 19 5.782893 AAGAGTATGACTGCATAGAGGAC 57.217 43.478 0.00 0.00 37.65 3.85
19 20 8.484214 AATAAAGAGTATGACTGCATAGAGGA 57.516 34.615 0.00 0.00 37.65 3.71
20 21 9.202273 GAAATAAAGAGTATGACTGCATAGAGG 57.798 37.037 0.00 0.00 37.65 3.69
21 22 9.755804 TGAAATAAAGAGTATGACTGCATAGAG 57.244 33.333 0.00 0.00 37.65 2.43
22 23 9.534565 GTGAAATAAAGAGTATGACTGCATAGA 57.465 33.333 0.00 0.00 37.65 1.98
23 24 8.768955 GGTGAAATAAAGAGTATGACTGCATAG 58.231 37.037 0.00 0.00 37.65 2.23
24 25 7.715249 GGGTGAAATAAAGAGTATGACTGCATA 59.285 37.037 0.00 0.00 35.94 3.14
25 26 6.543831 GGGTGAAATAAAGAGTATGACTGCAT 59.456 38.462 0.00 0.00 38.54 3.96
26 27 5.880332 GGGTGAAATAAAGAGTATGACTGCA 59.120 40.000 0.00 0.00 0.00 4.41
27 28 5.006746 CGGGTGAAATAAAGAGTATGACTGC 59.993 44.000 0.00 0.00 0.00 4.40
28 29 5.006746 GCGGGTGAAATAAAGAGTATGACTG 59.993 44.000 0.00 0.00 0.00 3.51
29 30 5.116882 GCGGGTGAAATAAAGAGTATGACT 58.883 41.667 0.00 0.00 0.00 3.41
30 31 4.873827 TGCGGGTGAAATAAAGAGTATGAC 59.126 41.667 0.00 0.00 0.00 3.06
31 32 4.873827 GTGCGGGTGAAATAAAGAGTATGA 59.126 41.667 0.00 0.00 0.00 2.15
32 33 4.634004 TGTGCGGGTGAAATAAAGAGTATG 59.366 41.667 0.00 0.00 0.00 2.39
33 34 4.839121 TGTGCGGGTGAAATAAAGAGTAT 58.161 39.130 0.00 0.00 0.00 2.12
34 35 4.274602 TGTGCGGGTGAAATAAAGAGTA 57.725 40.909 0.00 0.00 0.00 2.59
35 36 3.134574 TGTGCGGGTGAAATAAAGAGT 57.865 42.857 0.00 0.00 0.00 3.24
36 37 5.811399 TTATGTGCGGGTGAAATAAAGAG 57.189 39.130 0.00 0.00 0.00 2.85
37 38 7.717436 TGATATTATGTGCGGGTGAAATAAAGA 59.283 33.333 0.00 0.00 0.00 2.52
38 39 7.870826 TGATATTATGTGCGGGTGAAATAAAG 58.129 34.615 0.00 0.00 0.00 1.85
39 40 7.809546 TGATATTATGTGCGGGTGAAATAAA 57.190 32.000 0.00 0.00 0.00 1.40
40 41 7.500892 ACTTGATATTATGTGCGGGTGAAATAA 59.499 33.333 0.00 0.00 0.00 1.40
41 42 6.995686 ACTTGATATTATGTGCGGGTGAAATA 59.004 34.615 0.00 0.00 0.00 1.40
42 43 5.827797 ACTTGATATTATGTGCGGGTGAAAT 59.172 36.000 0.00 0.00 0.00 2.17
43 44 5.189928 ACTTGATATTATGTGCGGGTGAAA 58.810 37.500 0.00 0.00 0.00 2.69
44 45 4.776349 ACTTGATATTATGTGCGGGTGAA 58.224 39.130 0.00 0.00 0.00 3.18
45 46 4.415881 ACTTGATATTATGTGCGGGTGA 57.584 40.909 0.00 0.00 0.00 4.02
46 47 4.789481 GCAACTTGATATTATGTGCGGGTG 60.789 45.833 0.00 0.00 0.00 4.61
47 48 3.315191 GCAACTTGATATTATGTGCGGGT 59.685 43.478 0.00 0.00 0.00 5.28
48 49 3.565482 AGCAACTTGATATTATGTGCGGG 59.435 43.478 0.00 0.00 0.00 6.13
49 50 4.818534 AGCAACTTGATATTATGTGCGG 57.181 40.909 0.00 0.00 0.00 5.69
50 51 8.285394 AGAAATAGCAACTTGATATTATGTGCG 58.715 33.333 11.71 0.00 37.91 5.34
51 52 9.604626 GAGAAATAGCAACTTGATATTATGTGC 57.395 33.333 11.71 0.00 37.91 4.57
58 59 9.331282 GGTGTTAGAGAAATAGCAACTTGATAT 57.669 33.333 0.00 0.00 28.96 1.63
59 60 7.769044 GGGTGTTAGAGAAATAGCAACTTGATA 59.231 37.037 0.00 0.00 0.00 2.15
60 61 6.599638 GGGTGTTAGAGAAATAGCAACTTGAT 59.400 38.462 0.00 0.00 0.00 2.57
61 62 5.938125 GGGTGTTAGAGAAATAGCAACTTGA 59.062 40.000 0.00 0.00 0.00 3.02
62 63 5.705441 TGGGTGTTAGAGAAATAGCAACTTG 59.295 40.000 0.00 0.00 0.00 3.16
63 64 5.876357 TGGGTGTTAGAGAAATAGCAACTT 58.124 37.500 0.00 0.00 0.00 2.66
64 65 5.499004 TGGGTGTTAGAGAAATAGCAACT 57.501 39.130 0.00 0.00 0.00 3.16
65 66 5.472137 TGTTGGGTGTTAGAGAAATAGCAAC 59.528 40.000 0.00 0.00 0.00 4.17
66 67 5.626142 TGTTGGGTGTTAGAGAAATAGCAA 58.374 37.500 0.00 0.00 0.00 3.91
67 68 5.235850 TGTTGGGTGTTAGAGAAATAGCA 57.764 39.130 0.00 0.00 0.00 3.49
68 69 6.569179 TTTGTTGGGTGTTAGAGAAATAGC 57.431 37.500 0.00 0.00 0.00 2.97
69 70 8.335532 TCATTTGTTGGGTGTTAGAGAAATAG 57.664 34.615 0.00 0.00 0.00 1.73
70 71 8.877864 ATCATTTGTTGGGTGTTAGAGAAATA 57.122 30.769 0.00 0.00 0.00 1.40
71 72 7.362056 CGATCATTTGTTGGGTGTTAGAGAAAT 60.362 37.037 0.00 0.00 0.00 2.17
72 73 6.072728 CGATCATTTGTTGGGTGTTAGAGAAA 60.073 38.462 0.00 0.00 0.00 2.52
73 74 5.411361 CGATCATTTGTTGGGTGTTAGAGAA 59.589 40.000 0.00 0.00 0.00 2.87
74 75 4.935205 CGATCATTTGTTGGGTGTTAGAGA 59.065 41.667 0.00 0.00 0.00 3.10
75 76 4.437390 GCGATCATTTGTTGGGTGTTAGAG 60.437 45.833 0.00 0.00 0.00 2.43
76 77 3.438781 GCGATCATTTGTTGGGTGTTAGA 59.561 43.478 0.00 0.00 0.00 2.10
77 78 3.427503 GGCGATCATTTGTTGGGTGTTAG 60.428 47.826 0.00 0.00 0.00 2.34
78 79 2.490115 GGCGATCATTTGTTGGGTGTTA 59.510 45.455 0.00 0.00 0.00 2.41
79 80 1.272212 GGCGATCATTTGTTGGGTGTT 59.728 47.619 0.00 0.00 0.00 3.32
80 81 0.887933 GGCGATCATTTGTTGGGTGT 59.112 50.000 0.00 0.00 0.00 4.16
81 82 0.887247 TGGCGATCATTTGTTGGGTG 59.113 50.000 0.00 0.00 0.00 4.61
82 83 1.176527 CTGGCGATCATTTGTTGGGT 58.823 50.000 0.00 0.00 0.00 4.51
83 84 1.176527 ACTGGCGATCATTTGTTGGG 58.823 50.000 0.00 0.00 0.00 4.12
84 85 4.433186 TTAACTGGCGATCATTTGTTGG 57.567 40.909 0.00 0.00 0.00 3.77
85 86 8.459521 TTTATTTAACTGGCGATCATTTGTTG 57.540 30.769 0.00 0.00 0.00 3.33
86 87 9.139174 CTTTTATTTAACTGGCGATCATTTGTT 57.861 29.630 0.00 0.00 0.00 2.83
87 88 7.759433 CCTTTTATTTAACTGGCGATCATTTGT 59.241 33.333 0.00 0.00 0.00 2.83
88 89 7.222611 CCCTTTTATTTAACTGGCGATCATTTG 59.777 37.037 0.00 0.00 0.00 2.32
89 90 7.093509 ACCCTTTTATTTAACTGGCGATCATTT 60.094 33.333 0.00 0.00 0.00 2.32
90 91 6.379988 ACCCTTTTATTTAACTGGCGATCATT 59.620 34.615 0.00 0.00 0.00 2.57
91 92 5.891551 ACCCTTTTATTTAACTGGCGATCAT 59.108 36.000 0.00 0.00 0.00 2.45
92 93 5.258051 ACCCTTTTATTTAACTGGCGATCA 58.742 37.500 0.00 0.00 0.00 2.92
93 94 5.220989 GGACCCTTTTATTTAACTGGCGATC 60.221 44.000 0.00 0.00 0.00 3.69
94 95 4.643334 GGACCCTTTTATTTAACTGGCGAT 59.357 41.667 0.00 0.00 0.00 4.58
95 96 4.011698 GGACCCTTTTATTTAACTGGCGA 58.988 43.478 0.00 0.00 0.00 5.54
96 97 3.759618 TGGACCCTTTTATTTAACTGGCG 59.240 43.478 0.00 0.00 0.00 5.69
97 98 5.731957 TTGGACCCTTTTATTTAACTGGC 57.268 39.130 0.00 0.00 0.00 4.85
98 99 7.297936 ACTTTGGACCCTTTTATTTAACTGG 57.702 36.000 0.00 0.00 0.00 4.00
103 104 8.245491 GCGATTTACTTTGGACCCTTTTATTTA 58.755 33.333 0.00 0.00 0.00 1.40
104 105 7.039293 AGCGATTTACTTTGGACCCTTTTATTT 60.039 33.333 0.00 0.00 0.00 1.40
105 106 6.436218 AGCGATTTACTTTGGACCCTTTTATT 59.564 34.615 0.00 0.00 0.00 1.40
106 107 5.949952 AGCGATTTACTTTGGACCCTTTTAT 59.050 36.000 0.00 0.00 0.00 1.40
107 108 5.182380 CAGCGATTTACTTTGGACCCTTTTA 59.818 40.000 0.00 0.00 0.00 1.52
108 109 4.022329 CAGCGATTTACTTTGGACCCTTTT 60.022 41.667 0.00 0.00 0.00 2.27
109 110 3.506067 CAGCGATTTACTTTGGACCCTTT 59.494 43.478 0.00 0.00 0.00 3.11
110 111 3.081804 CAGCGATTTACTTTGGACCCTT 58.918 45.455 0.00 0.00 0.00 3.95
111 112 2.711542 CAGCGATTTACTTTGGACCCT 58.288 47.619 0.00 0.00 0.00 4.34
112 113 1.132453 GCAGCGATTTACTTTGGACCC 59.868 52.381 0.00 0.00 0.00 4.46
113 114 1.132453 GGCAGCGATTTACTTTGGACC 59.868 52.381 0.00 0.00 0.00 4.46
114 115 1.810151 TGGCAGCGATTTACTTTGGAC 59.190 47.619 0.00 0.00 0.00 4.02
115 116 2.192664 TGGCAGCGATTTACTTTGGA 57.807 45.000 0.00 0.00 0.00 3.53
116 117 3.508744 ATTGGCAGCGATTTACTTTGG 57.491 42.857 0.00 0.00 0.00 3.28
117 118 3.543494 CGAATTGGCAGCGATTTACTTTG 59.457 43.478 1.03 0.00 0.00 2.77
118 119 3.190535 ACGAATTGGCAGCGATTTACTTT 59.809 39.130 12.27 0.00 0.00 2.66
119 120 2.747446 ACGAATTGGCAGCGATTTACTT 59.253 40.909 12.27 0.00 0.00 2.24
120 121 2.095853 CACGAATTGGCAGCGATTTACT 59.904 45.455 12.27 0.00 0.00 2.24
121 122 2.159572 ACACGAATTGGCAGCGATTTAC 60.160 45.455 12.27 0.00 0.00 2.01
122 123 2.080693 ACACGAATTGGCAGCGATTTA 58.919 42.857 12.27 0.00 0.00 1.40
123 124 0.881118 ACACGAATTGGCAGCGATTT 59.119 45.000 12.27 0.00 0.00 2.17
124 125 0.881118 AACACGAATTGGCAGCGATT 59.119 45.000 12.27 0.00 0.00 3.34
125 126 0.447801 GAACACGAATTGGCAGCGAT 59.552 50.000 12.27 0.00 0.00 4.58
126 127 1.866237 GAACACGAATTGGCAGCGA 59.134 52.632 12.27 0.00 0.00 4.93
127 128 1.509787 CGAACACGAATTGGCAGCG 60.510 57.895 0.00 5.19 0.00 5.18
128 129 0.725784 CACGAACACGAATTGGCAGC 60.726 55.000 0.00 0.00 0.00 5.25
129 130 0.865111 TCACGAACACGAATTGGCAG 59.135 50.000 0.00 0.00 0.00 4.85
130 131 1.262950 CTTCACGAACACGAATTGGCA 59.737 47.619 0.00 0.00 0.00 4.92
131 132 1.399727 CCTTCACGAACACGAATTGGC 60.400 52.381 0.00 0.00 0.00 4.52
132 133 2.139917 TCCTTCACGAACACGAATTGG 58.860 47.619 0.00 0.00 0.00 3.16
133 134 3.541711 GTTCCTTCACGAACACGAATTG 58.458 45.455 0.00 0.00 41.51 2.32
134 135 2.220133 CGTTCCTTCACGAACACGAATT 59.780 45.455 0.00 0.00 43.15 2.17
135 136 1.790623 CGTTCCTTCACGAACACGAAT 59.209 47.619 0.00 0.00 43.15 3.34
136 137 1.202203 CGTTCCTTCACGAACACGAA 58.798 50.000 0.00 0.00 43.15 3.85
137 138 0.101040 ACGTTCCTTCACGAACACGA 59.899 50.000 0.00 0.00 43.15 4.35
138 139 0.228742 CACGTTCCTTCACGAACACG 59.771 55.000 0.00 0.00 43.15 4.49
139 140 1.563111 TCACGTTCCTTCACGAACAC 58.437 50.000 0.00 0.00 43.15 3.32
140 141 2.198406 CTTCACGTTCCTTCACGAACA 58.802 47.619 0.00 0.00 43.15 3.18
141 142 2.199236 ACTTCACGTTCCTTCACGAAC 58.801 47.619 0.00 0.00 43.15 3.95
142 143 2.589798 ACTTCACGTTCCTTCACGAA 57.410 45.000 0.00 0.00 43.15 3.85
143 144 2.589798 AACTTCACGTTCCTTCACGA 57.410 45.000 0.00 0.00 43.15 4.35
144 145 2.347292 CGAAACTTCACGTTCCTTCACG 60.347 50.000 0.00 0.00 46.04 4.35
145 146 2.033151 CCGAAACTTCACGTTCCTTCAC 60.033 50.000 0.00 0.00 33.90 3.18
146 147 2.159071 TCCGAAACTTCACGTTCCTTCA 60.159 45.455 0.00 0.00 33.90 3.02
147 148 2.476821 TCCGAAACTTCACGTTCCTTC 58.523 47.619 0.00 0.00 33.90 3.46
148 149 2.607631 TCCGAAACTTCACGTTCCTT 57.392 45.000 0.00 0.00 33.90 3.36
149 150 2.207590 GTTCCGAAACTTCACGTTCCT 58.792 47.619 0.00 0.00 33.90 3.36
150 151 1.262417 GGTTCCGAAACTTCACGTTCC 59.738 52.381 0.00 0.00 33.90 3.62
151 152 1.071041 CGGTTCCGAAACTTCACGTTC 60.071 52.381 5.19 0.00 33.90 3.95
152 153 0.932399 CGGTTCCGAAACTTCACGTT 59.068 50.000 5.19 0.00 37.47 3.99
153 154 0.102844 TCGGTTCCGAAACTTCACGT 59.897 50.000 11.66 0.00 35.41 4.49
154 155 0.505655 GTCGGTTCCGAAACTTCACG 59.494 55.000 15.59 0.00 40.26 4.35
155 156 0.863799 GGTCGGTTCCGAAACTTCAC 59.136 55.000 15.59 2.30 40.26 3.18
156 157 0.249996 GGGTCGGTTCCGAAACTTCA 60.250 55.000 15.59 0.00 40.26 3.02
157 158 2.536725 GGGTCGGTTCCGAAACTTC 58.463 57.895 15.59 3.12 40.26 3.01
158 159 4.785767 GGGTCGGTTCCGAAACTT 57.214 55.556 15.59 0.00 40.26 2.66
181 182 4.696402 GGGACGTGATGTAGTATAGAGGAG 59.304 50.000 0.00 0.00 0.00 3.69
182 183 4.506271 GGGGACGTGATGTAGTATAGAGGA 60.506 50.000 0.00 0.00 0.00 3.71
183 184 3.757493 GGGGACGTGATGTAGTATAGAGG 59.243 52.174 0.00 0.00 0.00 3.69
184 185 4.653868 AGGGGACGTGATGTAGTATAGAG 58.346 47.826 0.00 0.00 0.00 2.43
185 186 4.719026 AGGGGACGTGATGTAGTATAGA 57.281 45.455 0.00 0.00 0.00 1.98
199 200 2.835431 AGAGCCGATCAGGGGACG 60.835 66.667 5.87 0.00 41.48 4.79
205 206 4.598894 CCCCGCAGAGCCGATCAG 62.599 72.222 0.00 0.00 0.00 2.90
250 251 1.598701 GCTCCAATGCTTCCCGCTTT 61.599 55.000 0.00 0.00 40.11 3.51
253 254 3.880846 CGCTCCAATGCTTCCCGC 61.881 66.667 0.00 0.00 39.77 6.13
255 256 1.066152 GAAATCGCTCCAATGCTTCCC 59.934 52.381 0.00 0.00 0.00 3.97
276 277 2.087646 TCGAGATCGAGGCAGGATATG 58.912 52.381 0.00 0.00 44.22 1.78
313 314 2.515057 GCCGGCGAGAGAGAGAGA 60.515 66.667 12.58 0.00 0.00 3.10
314 315 1.733402 AATGCCGGCGAGAGAGAGAG 61.733 60.000 23.90 0.00 0.00 3.20
315 316 1.754621 AATGCCGGCGAGAGAGAGA 60.755 57.895 23.90 0.00 0.00 3.10
316 317 1.591059 CAATGCCGGCGAGAGAGAG 60.591 63.158 23.90 1.28 0.00 3.20
317 318 2.284798 GACAATGCCGGCGAGAGAGA 62.285 60.000 23.90 1.41 0.00 3.10
318 319 1.880340 GACAATGCCGGCGAGAGAG 60.880 63.158 23.90 10.67 0.00 3.20
319 320 2.184322 GACAATGCCGGCGAGAGA 59.816 61.111 23.90 3.26 0.00 3.10
320 321 2.125552 TGACAATGCCGGCGAGAG 60.126 61.111 23.90 14.12 0.00 3.20
321 322 2.434185 GTGACAATGCCGGCGAGA 60.434 61.111 23.90 4.21 0.00 4.04
322 323 3.499737 GGTGACAATGCCGGCGAG 61.500 66.667 23.90 16.47 0.00 5.03
323 324 4.321966 TGGTGACAATGCCGGCGA 62.322 61.111 23.90 11.80 37.44 5.54
324 325 3.803082 CTGGTGACAATGCCGGCG 61.803 66.667 23.90 10.49 42.06 6.46
369 370 1.286501 GCGGCGACTAATGATGACAA 58.713 50.000 12.98 0.00 0.00 3.18
371 372 1.548973 CGGCGGCGACTAATGATGAC 61.549 60.000 29.19 0.00 0.00 3.06
372 373 1.299850 CGGCGGCGACTAATGATGA 60.300 57.895 29.19 0.00 0.00 2.92
373 374 2.310233 CCGGCGGCGACTAATGATG 61.310 63.158 34.49 8.65 0.00 3.07
374 375 2.029073 CCGGCGGCGACTAATGAT 59.971 61.111 34.49 0.00 0.00 2.45
375 376 4.884257 GCCGGCGGCGACTAATGA 62.884 66.667 37.09 0.00 39.62 2.57
422 2223 1.227527 CACACAGTCCTCCAACGCA 60.228 57.895 0.00 0.00 0.00 5.24
424 2225 0.179084 ACACACACAGTCCTCCAACG 60.179 55.000 0.00 0.00 0.00 4.10
425 2226 2.902705 TACACACACAGTCCTCCAAC 57.097 50.000 0.00 0.00 0.00 3.77
426 2227 2.703536 ACATACACACACAGTCCTCCAA 59.296 45.455 0.00 0.00 0.00 3.53
427 2228 2.325484 ACATACACACACAGTCCTCCA 58.675 47.619 0.00 0.00 0.00 3.86
428 2229 4.441634 GGATACATACACACACAGTCCTCC 60.442 50.000 0.00 0.00 0.00 4.30
429 2230 4.402793 AGGATACATACACACACAGTCCTC 59.597 45.833 0.00 0.00 41.41 3.71
430 2231 4.160439 CAGGATACATACACACACAGTCCT 59.840 45.833 0.00 0.00 41.41 3.85
431 2232 4.159693 TCAGGATACATACACACACAGTCC 59.840 45.833 0.00 0.00 41.41 3.85
432 2233 5.324784 TCAGGATACATACACACACAGTC 57.675 43.478 0.00 0.00 41.41 3.51
462 2320 1.005394 GACGGTATGGTATGGCCCG 60.005 63.158 0.00 0.00 44.06 6.13
536 2394 2.291411 GGAAGAAGGGGGTTAGGGTTTC 60.291 54.545 0.00 0.00 0.00 2.78
537 2395 1.714787 GGAAGAAGGGGGTTAGGGTTT 59.285 52.381 0.00 0.00 0.00 3.27
538 2396 1.379776 GGAAGAAGGGGGTTAGGGTT 58.620 55.000 0.00 0.00 0.00 4.11
539 2397 0.912968 CGGAAGAAGGGGGTTAGGGT 60.913 60.000 0.00 0.00 0.00 4.34
624 2482 2.584143 CGTAATCGGGGTGCGGAC 60.584 66.667 0.00 0.00 0.00 4.79
635 2493 0.297820 CGCTTGCTCGTTCCGTAATC 59.702 55.000 0.00 0.00 0.00 1.75
643 2501 3.986006 TCGACCCGCTTGCTCGTT 61.986 61.111 3.43 0.00 0.00 3.85
656 2514 1.343147 CGGAGACTCGTACGTCGAC 59.657 63.158 16.05 5.18 44.01 4.20
694 2561 3.654020 GGCGGCCATCGAATGAGC 61.654 66.667 15.62 0.00 42.43 4.26
773 2640 2.096909 CGATTGATAATGGAACGACGCC 60.097 50.000 0.00 0.00 0.00 5.68
776 2643 4.795970 AAGCGATTGATAATGGAACGAC 57.204 40.909 0.00 0.00 0.00 4.34
779 2646 6.861065 TCCTAAAGCGATTGATAATGGAAC 57.139 37.500 0.00 0.00 0.00 3.62
824 2691 2.567169 CTGGGAATCATCTACGGGCATA 59.433 50.000 0.00 0.00 0.00 3.14
865 2756 6.518395 CGTGTGTGTTTTCCAGATAAAATACG 59.482 38.462 0.00 0.00 40.98 3.06
961 2902 1.317613 ATGTTGCAGTCGGCTTTTGA 58.682 45.000 0.00 0.00 45.15 2.69
1113 3075 5.466393 CCCCATTGACAAGTGAAACAATTTC 59.534 40.000 0.00 0.00 41.43 2.17
1125 3087 0.609131 AACGAGCCCCCATTGACAAG 60.609 55.000 0.00 0.00 0.00 3.16
1157 3129 1.418264 TGTCCCAAATCTCCAACGACA 59.582 47.619 0.00 0.00 0.00 4.35
1176 3153 2.884639 CCCTGTACAGAAACCCTTGTTG 59.115 50.000 24.68 2.55 34.13 3.33
1318 4255 3.262142 TAACTTTTGCGCTGCCGGC 62.262 57.895 22.73 22.73 37.64 6.13
1459 4402 1.876156 CCTGAAGTGGAACAAGCAGTC 59.124 52.381 0.00 0.00 44.16 3.51
1493 4436 1.521010 CCGGATGCAGACTCAGCTG 60.521 63.158 7.63 7.63 38.91 4.24
1494 4437 1.683707 TCCGGATGCAGACTCAGCT 60.684 57.895 0.00 0.00 0.00 4.24
1610 4553 4.114997 CCCAAATGGTGTCGCGCC 62.115 66.667 0.00 0.00 34.12 6.53
1695 4638 1.071471 CCCGCCCACATGAGGATAC 59.929 63.158 11.19 0.00 0.00 2.24
1710 4653 1.134401 TCTAAGCTCTGAAATGGCCCG 60.134 52.381 0.00 0.00 0.00 6.13
1797 4740 2.223249 TGTGCACGCAAAGAAAAGAGTC 60.223 45.455 13.13 0.00 0.00 3.36
1931 4894 8.465999 CCTGTATGCATGAAAGTACCAAATTTA 58.534 33.333 10.16 0.00 0.00 1.40
1960 4926 2.545742 GGCAGTTCGGTGCTTCATTTTT 60.546 45.455 5.50 0.00 43.45 1.94
1968 4934 2.200373 AATTAAGGCAGTTCGGTGCT 57.800 45.000 5.50 0.00 43.45 4.40
2083 5049 7.312899 ACAAAATTACAAAGTGGTAGCATAGC 58.687 34.615 0.00 0.00 40.09 2.97
2128 5099 5.332581 CGTAGCTCATGACATTAATCAACGG 60.333 44.000 0.00 0.00 30.82 4.44
2167 5142 4.082733 GGTTAACAAGGATCAAACAGCTCC 60.083 45.833 8.10 0.00 32.52 4.70
2189 5165 7.094634 GGACAAATAGTATGCATGTAGGATTGG 60.095 40.741 10.16 2.43 0.00 3.16
2197 5173 6.062095 GGTTAGGGACAAATAGTATGCATGT 58.938 40.000 10.16 0.00 0.00 3.21
2220 5196 8.696043 TTCAATGTTATCATCCAGAAATAGGG 57.304 34.615 0.00 0.00 32.56 3.53
2229 5205 8.217111 TGGCTATACTTTCAATGTTATCATCCA 58.783 33.333 0.00 0.00 32.56 3.41
2266 5245 4.816385 CACTTTCACAACAGTGGAGTGTAT 59.184 41.667 14.40 0.63 39.80 2.29
2333 5314 2.217510 TAGAACTCAGGTCGCTCCTT 57.782 50.000 0.00 0.00 45.67 3.36
2489 5470 5.186215 TGTGATCCTCGTTATACTTGTCCAA 59.814 40.000 0.00 0.00 0.00 3.53
2570 5551 0.603569 ACACGAAGCACTCCAGGTAG 59.396 55.000 0.00 0.00 0.00 3.18
2814 5802 1.136828 AGGTACAGCTGACCACCAAA 58.863 50.000 26.77 1.85 39.65 3.28
2837 5825 3.687698 ACCGTTATCAAAAGGATCAACCG 59.312 43.478 0.00 0.00 44.74 4.44
2941 5929 1.750778 AGGCACAAACAAACAGGTCAG 59.249 47.619 0.00 0.00 0.00 3.51
3197 6192 8.932610 AGGTCAATTCAGAGATCATACACTAAT 58.067 33.333 0.00 0.00 0.00 1.73
3198 6193 8.200120 CAGGTCAATTCAGAGATCATACACTAA 58.800 37.037 0.00 0.00 0.00 2.24
3199 6194 7.343057 ACAGGTCAATTCAGAGATCATACACTA 59.657 37.037 0.00 0.00 0.00 2.74
3200 6195 6.155910 ACAGGTCAATTCAGAGATCATACACT 59.844 38.462 0.00 0.00 0.00 3.55
3378 6382 1.065926 CAGCCATAGCAGTGACCTTCA 60.066 52.381 0.00 0.00 43.56 3.02
3393 6397 5.123820 GTGCTTCATATTACTTTCACAGCCA 59.876 40.000 0.00 0.00 0.00 4.75
3493 6497 2.256117 TCCATAGTCTCTGCGATCGA 57.744 50.000 21.57 3.01 0.00 3.59
3550 6554 4.104776 CAGCAACAGAAAATGTCAAACGT 58.895 39.130 0.00 0.00 43.00 3.99
3595 6599 5.123027 CCTCAGCTTTCCACTGTAAAAGATC 59.877 44.000 15.22 0.00 35.02 2.75
3596 6600 5.006386 CCTCAGCTTTCCACTGTAAAAGAT 58.994 41.667 15.22 8.67 35.02 2.40
3624 6628 5.454966 ACCTTGAACATTTGTCTTACCCTT 58.545 37.500 0.00 0.00 0.00 3.95
3828 6832 5.747565 TCCATGATCGAATTCATAAAACGC 58.252 37.500 6.22 0.00 34.59 4.84
3958 6962 3.308595 TGTAGTCACAAGAAAGTGCAACG 59.691 43.478 0.00 0.00 45.86 4.10
4092 10156 3.319137 AGTACTGCCATACACACACAG 57.681 47.619 0.00 0.00 0.00 3.66
4094 10158 3.399330 ACAAGTACTGCCATACACACAC 58.601 45.455 0.00 0.00 0.00 3.82
4159 10224 5.578157 TTTCCTACTAGCTTTCCACCTTT 57.422 39.130 0.00 0.00 0.00 3.11
4164 10229 3.329520 TGGCTTTTCCTACTAGCTTTCCA 59.670 43.478 0.00 0.00 35.30 3.53
4174 10259 8.410912 TCTTCTTTAACTTTTGGCTTTTCCTAC 58.589 33.333 0.00 0.00 35.26 3.18
4180 10265 9.719355 TTCTTTTCTTCTTTAACTTTTGGCTTT 57.281 25.926 0.00 0.00 0.00 3.51
4183 10268 7.547722 TGGTTCTTTTCTTCTTTAACTTTTGGC 59.452 33.333 0.00 0.00 0.00 4.52
4184 10269 8.996024 TGGTTCTTTTCTTCTTTAACTTTTGG 57.004 30.769 0.00 0.00 0.00 3.28
4186 10271 9.639601 CACTGGTTCTTTTCTTCTTTAACTTTT 57.360 29.630 0.00 0.00 0.00 2.27
4191 10276 6.767524 TGCACTGGTTCTTTTCTTCTTTAA 57.232 33.333 0.00 0.00 0.00 1.52
4195 10280 3.067320 GCTTGCACTGGTTCTTTTCTTCT 59.933 43.478 0.00 0.00 0.00 2.85
4196 10281 3.181487 TGCTTGCACTGGTTCTTTTCTTC 60.181 43.478 0.00 0.00 0.00 2.87
4199 10284 2.869233 TGCTTGCACTGGTTCTTTTC 57.131 45.000 0.00 0.00 0.00 2.29
4202 10287 2.034124 ACAATGCTTGCACTGGTTCTT 58.966 42.857 8.86 0.00 0.00 2.52
4203 10288 1.610522 GACAATGCTTGCACTGGTTCT 59.389 47.619 8.86 0.00 0.00 3.01
4204 10289 1.610522 AGACAATGCTTGCACTGGTTC 59.389 47.619 8.86 0.00 0.00 3.62
4206 10291 0.956633 CAGACAATGCTTGCACTGGT 59.043 50.000 8.86 2.64 35.91 4.00
4219 10304 0.472044 TTGTACAGCCAGGCAGACAA 59.528 50.000 15.80 16.88 0.00 3.18
4220 10305 0.692476 ATTGTACAGCCAGGCAGACA 59.308 50.000 15.80 11.55 0.00 3.41
4222 10307 1.350684 TGAATTGTACAGCCAGGCAGA 59.649 47.619 15.80 0.00 0.00 4.26
4223 10308 1.825090 TGAATTGTACAGCCAGGCAG 58.175 50.000 15.80 8.60 0.00 4.85
4243 10328 5.966319 AGGCATGGGAGAAATAGGAATTTTT 59.034 36.000 0.00 0.00 35.41 1.94
4244 10329 5.532155 AGGCATGGGAGAAATAGGAATTTT 58.468 37.500 0.00 0.00 35.41 1.82
4247 10332 3.723681 TGAGGCATGGGAGAAATAGGAAT 59.276 43.478 0.00 0.00 0.00 3.01
4248 10333 3.122480 TGAGGCATGGGAGAAATAGGAA 58.878 45.455 0.00 0.00 0.00 3.36
4315 10401 7.363431 GTTTTCAAAAACCAACAAATGAACCA 58.637 30.769 7.03 0.00 41.77 3.67
4346 10432 2.435805 AGCCTCTGGAATGAGCGAAATA 59.564 45.455 0.00 0.00 33.02 1.40
4369 10455 1.122019 AAGGAGAAGGCACTGACGGT 61.122 55.000 0.00 0.00 40.86 4.83
4370 10456 0.035458 AAAGGAGAAGGCACTGACGG 59.965 55.000 0.00 0.00 40.86 4.79
4454 10578 4.304110 GACTTCATACCAACACACGAGAA 58.696 43.478 0.00 0.00 0.00 2.87
4503 10631 1.003580 TCTGCCAACCACCTGATCTTC 59.996 52.381 0.00 0.00 0.00 2.87
4517 10645 2.601666 AGGTGCTCGAGTCTGCCA 60.602 61.111 15.13 0.00 0.00 4.92
4565 10693 0.250640 ACTGCTTGTGAGAGGCTTGG 60.251 55.000 0.00 0.00 0.00 3.61
4567 10695 0.320247 CGACTGCTTGTGAGAGGCTT 60.320 55.000 0.00 0.00 0.00 4.35
4590 10718 4.318332 TGCAGAATAGACTTTGGACAGTG 58.682 43.478 0.00 0.00 0.00 3.66
4591 10719 4.573900 CTGCAGAATAGACTTTGGACAGT 58.426 43.478 8.42 0.00 0.00 3.55
4641 10769 2.050144 TGGAAGTTCAGAGTTGAGGCT 58.950 47.619 5.01 0.00 34.15 4.58
4648 10776 1.419387 AGCTGCTTGGAAGTTCAGAGT 59.581 47.619 5.01 0.00 0.00 3.24
4668 10796 0.544833 ATTCCAATGCCACCCTTGCA 60.545 50.000 0.00 0.00 43.97 4.08
4689 10818 1.955778 CAACACTCAATTCTGCACCCA 59.044 47.619 0.00 0.00 0.00 4.51
4736 10865 2.904866 TGGACGCCCACTGCAAAC 60.905 61.111 0.00 0.00 41.33 2.93
4768 10897 0.826715 CATCCAGCTTTCCTCGGAGA 59.173 55.000 6.58 0.00 0.00 3.71
4778 10907 1.041447 GCATTCAGGCCATCCAGCTT 61.041 55.000 5.01 0.00 33.74 3.74
4821 10950 2.902486 TCAACTCTGCTGATCTTCTGGT 59.098 45.455 0.00 0.00 0.00 4.00
4826 10955 4.333690 AGCAAATCAACTCTGCTGATCTT 58.666 39.130 0.00 0.00 44.56 2.40
4841 10970 0.679002 TGAGAGGGCTGCAGCAAATC 60.679 55.000 37.63 29.13 44.36 2.17
4847 10976 0.747283 GTTGGATGAGAGGGCTGCAG 60.747 60.000 10.11 10.11 0.00 4.41
4848 10977 1.203441 AGTTGGATGAGAGGGCTGCA 61.203 55.000 0.50 0.00 0.00 4.41
4868 10997 1.734465 GCCGATGCTATCACTAATGGC 59.266 52.381 0.00 0.00 41.96 4.40
4872 11001 1.269569 CGTGGCCGATGCTATCACTAA 60.270 52.381 0.00 0.00 37.74 2.24
4877 11006 1.664965 GACCGTGGCCGATGCTATC 60.665 63.158 0.00 0.00 37.74 2.08
4899 11028 2.296792 TCATCTCTCGAGAGCCAAGAG 58.703 52.381 33.20 19.15 41.33 2.85
4910 11039 4.256920 ACCCAAATCTGTTTCATCTCTCG 58.743 43.478 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.