Multiple sequence alignment - TraesCS3D01G452600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G452600 chr3D 100.000 2982 0 0 1 2982 560199476 560196495 0.000000e+00 5507
1 TraesCS3D01G452600 chr3D 81.323 1965 261 71 466 2373 560826836 560828751 0.000000e+00 1498
2 TraesCS3D01G452600 chr3D 84.870 965 123 21 469 1425 560235158 560234209 0.000000e+00 952
3 TraesCS3D01G452600 chr3D 79.819 773 118 27 1628 2373 560867968 560868729 2.040000e-146 529
4 TraesCS3D01G452600 chr3D 87.220 446 45 11 1927 2367 560333124 560333562 5.740000e-137 497
5 TraesCS3D01G452600 chr3D 83.497 509 71 9 1927 2430 560754042 560754542 2.090000e-126 462
6 TraesCS3D01G452600 chr3D 84.479 451 59 8 1927 2371 560784305 560783860 4.560000e-118 435
7 TraesCS3D01G452600 chr3D 80.444 450 76 10 1927 2371 560645445 560645003 1.710000e-87 333
8 TraesCS3D01G452600 chr3D 83.582 335 35 12 1562 1887 560784703 560784380 2.250000e-76 296
9 TraesCS3D01G452600 chr3A 94.120 2228 104 21 351 2572 696290379 696288173 0.000000e+00 3363
10 TraesCS3D01G452600 chr3A 81.266 1943 274 69 462 2373 696637173 696639056 0.000000e+00 1489
11 TraesCS3D01G452600 chr3A 84.314 255 29 7 1628 1879 696599371 696599125 3.840000e-59 239
12 TraesCS3D01G452600 chr3A 84.756 164 21 3 161 320 696294349 696294186 8.550000e-36 161
13 TraesCS3D01G452600 chr3B 93.442 1845 100 15 22 1857 744341269 744339437 0.000000e+00 2717
14 TraesCS3D01G452600 chr3B 82.302 1373 192 36 450 1801 744590523 744591865 0.000000e+00 1142
15 TraesCS3D01G452600 chr3B 82.013 1401 193 40 462 1841 746856423 746855061 0.000000e+00 1136
16 TraesCS3D01G452600 chr3B 81.894 1320 188 35 505 1801 747093708 747094999 0.000000e+00 1066
17 TraesCS3D01G452600 chr3B 93.429 700 44 2 1854 2552 744339196 744338498 0.000000e+00 1037
18 TraesCS3D01G452600 chr3B 80.841 1331 194 44 505 1807 744546730 744545433 0.000000e+00 989
19 TraesCS3D01G452600 chr3B 84.488 967 141 8 462 1425 744512969 744512009 0.000000e+00 946
20 TraesCS3D01G452600 chr3B 84.528 963 130 17 469 1425 744419906 744418957 0.000000e+00 935
21 TraesCS3D01G452600 chr3B 81.416 904 119 31 1495 2372 745541071 745541951 0.000000e+00 693
22 TraesCS3D01G452600 chr3B 91.211 421 26 4 2572 2982 732048677 732049096 2.010000e-156 562
23 TraesCS3D01G452600 chr3B 85.523 449 59 4 1927 2373 746854467 746854023 5.820000e-127 464
24 TraesCS3D01G452600 chr3B 85.000 440 56 7 1933 2365 745448798 745448362 3.530000e-119 438
25 TraesCS3D01G452600 chr3B 84.164 341 40 9 1560 1894 745202349 745202017 4.800000e-83 318
26 TraesCS3D01G452600 chr3B 90.141 213 18 2 1635 1847 744418704 744418495 1.050000e-69 274
27 TraesCS3D01G452600 chr3B 89.671 213 19 3 1635 1847 747494196 747494405 4.900000e-68 268
28 TraesCS3D01G452600 chr3B 82.500 320 38 11 1564 1879 745473789 745473484 6.340000e-67 265
29 TraesCS3D01G452600 chr3B 82.114 123 21 1 31 152 50345935 50346057 1.460000e-18 104
30 TraesCS3D01G452600 chr2D 92.891 422 13 8 2571 2982 99684138 99684552 5.500000e-167 597
31 TraesCS3D01G452600 chr1B 92.162 421 23 6 2572 2982 559137304 559136884 1.190000e-163 586
32 TraesCS3D01G452600 chr1B 91.686 421 25 6 2572 2982 559151152 559150732 2.580000e-160 575
33 TraesCS3D01G452600 chr1B 91.469 422 25 6 2572 2982 559144228 559143807 1.200000e-158 569
34 TraesCS3D01G452600 chr1B 90.995 422 28 6 2571 2982 593475940 593475519 7.220000e-156 560
35 TraesCS3D01G452600 chr1B 90.909 77 7 0 2296 2372 39565449 39565525 1.460000e-18 104
36 TraesCS3D01G452600 chr7A 92.086 417 28 3 2571 2982 106812591 106813007 1.540000e-162 582
37 TraesCS3D01G452600 chr1D 94.930 355 14 3 2572 2924 11422846 11422494 1.210000e-153 553
38 TraesCS3D01G452600 chr2A 90.736 421 27 4 2571 2982 684897355 684897772 4.340000e-153 551
39 TraesCS3D01G452600 chr5A 92.308 78 6 0 2905 2982 689428131 689428054 8.740000e-21 111
40 TraesCS3D01G452600 chr6B 90.909 77 7 0 2296 2372 148311819 148311743 1.460000e-18 104
41 TraesCS3D01G452600 chr1A 90.909 77 7 0 2296 2372 552504869 552504945 1.460000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G452600 chr3D 560196495 560199476 2981 True 5507.0 5507 100.0000 1 2982 1 chr3D.!!$R1 2981
1 TraesCS3D01G452600 chr3D 560826836 560828751 1915 False 1498.0 1498 81.3230 466 2373 1 chr3D.!!$F3 1907
2 TraesCS3D01G452600 chr3D 560234209 560235158 949 True 952.0 952 84.8700 469 1425 1 chr3D.!!$R2 956
3 TraesCS3D01G452600 chr3D 560867968 560868729 761 False 529.0 529 79.8190 1628 2373 1 chr3D.!!$F4 745
4 TraesCS3D01G452600 chr3D 560754042 560754542 500 False 462.0 462 83.4970 1927 2430 1 chr3D.!!$F2 503
5 TraesCS3D01G452600 chr3D 560783860 560784703 843 True 365.5 435 84.0305 1562 2371 2 chr3D.!!$R4 809
6 TraesCS3D01G452600 chr3A 696288173 696294349 6176 True 1762.0 3363 89.4380 161 2572 2 chr3A.!!$R2 2411
7 TraesCS3D01G452600 chr3A 696637173 696639056 1883 False 1489.0 1489 81.2660 462 2373 1 chr3A.!!$F1 1911
8 TraesCS3D01G452600 chr3B 744338498 744341269 2771 True 1877.0 2717 93.4355 22 2552 2 chr3B.!!$R6 2530
9 TraesCS3D01G452600 chr3B 744590523 744591865 1342 False 1142.0 1142 82.3020 450 1801 1 chr3B.!!$F3 1351
10 TraesCS3D01G452600 chr3B 747093708 747094999 1291 False 1066.0 1066 81.8940 505 1801 1 chr3B.!!$F5 1296
11 TraesCS3D01G452600 chr3B 744545433 744546730 1297 True 989.0 989 80.8410 505 1807 1 chr3B.!!$R2 1302
12 TraesCS3D01G452600 chr3B 744512009 744512969 960 True 946.0 946 84.4880 462 1425 1 chr3B.!!$R1 963
13 TraesCS3D01G452600 chr3B 746854023 746856423 2400 True 800.0 1136 83.7680 462 2373 2 chr3B.!!$R8 1911
14 TraesCS3D01G452600 chr3B 745541071 745541951 880 False 693.0 693 81.4160 1495 2372 1 chr3B.!!$F4 877
15 TraesCS3D01G452600 chr3B 744418495 744419906 1411 True 604.5 935 87.3345 469 1847 2 chr3B.!!$R7 1378

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 131 0.107654 GTAGCACTTGGCCCCACTAG 60.108 60.0 0.0 0.0 46.50 2.57 F
224 226 0.107945 ACATCTTCTCTTGCTCCGGC 60.108 55.0 0.0 0.0 39.26 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 5307 1.070134 ACACGCAGTTTAGGAGCAGAA 59.930 47.619 0.0 0.0 41.61 3.02 R
2141 6645 1.473434 CCGGGGAGAAACACTCTATGC 60.473 57.143 0.0 0.0 44.37 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.175859 GGTGCTAGTTTGCTATGAACAGTA 58.824 41.667 0.00 0.00 0.00 2.74
64 65 9.573166 AGTAGCATAATCAGTAATAATTTGCCA 57.427 29.630 0.00 0.00 0.00 4.92
67 68 9.573166 AGCATAATCAGTAATAATTTGCCACTA 57.427 29.630 0.00 0.00 0.00 2.74
111 113 2.141067 ACCCTCCCAACCTGTTTTAGT 58.859 47.619 0.00 0.00 0.00 2.24
116 118 3.746940 TCCCAACCTGTTTTAGTAGCAC 58.253 45.455 0.00 0.00 0.00 4.40
121 123 3.146847 ACCTGTTTTAGTAGCACTTGGC 58.853 45.455 0.00 0.00 45.30 4.52
125 127 1.068948 TTTAGTAGCACTTGGCCCCA 58.931 50.000 0.00 0.00 46.50 4.96
129 131 0.107654 GTAGCACTTGGCCCCACTAG 60.108 60.000 0.00 0.00 46.50 2.57
140 142 5.459982 TGGCCCCACTAGTACATATTTTT 57.540 39.130 0.00 0.00 0.00 1.94
222 224 3.120060 CCAAAACATCTTCTCTTGCTCCG 60.120 47.826 0.00 0.00 0.00 4.63
224 226 0.107945 ACATCTTCTCTTGCTCCGGC 60.108 55.000 0.00 0.00 39.26 6.13
263 266 9.463443 GTGATTTGCAAAGTTAGTATTGAAACT 57.537 29.630 18.19 0.00 37.54 2.66
329 349 7.221828 AGCAAATTCGTTTTTCTTGTTCTTC 57.778 32.000 0.00 0.00 0.00 2.87
331 351 6.627274 CAAATTCGTTTTTCTTGTTCTTCGG 58.373 36.000 0.00 0.00 0.00 4.30
339 359 1.002087 TCTTGTTCTTCGGGAAGAGCC 59.998 52.381 18.56 11.21 46.80 4.70
340 360 1.002544 CTTGTTCTTCGGGAAGAGCCT 59.997 52.381 18.56 0.00 46.80 4.58
390 4171 1.405105 CCTACATTTGGCCCAACATCG 59.595 52.381 0.00 0.00 0.00 3.84
394 4175 1.322538 ATTTGGCCCAACATCGAGCC 61.323 55.000 0.00 4.25 45.96 4.70
403 4184 1.086067 AACATCGAGCCAGCGACATG 61.086 55.000 0.00 0.00 43.79 3.21
416 4212 1.073025 GACATGCCACCACCACTCA 59.927 57.895 0.00 0.00 0.00 3.41
417 4213 1.228245 ACATGCCACCACCACTCAC 60.228 57.895 0.00 0.00 0.00 3.51
420 4216 1.418097 ATGCCACCACCACTCACTCA 61.418 55.000 0.00 0.00 0.00 3.41
422 4218 1.300931 CCACCACCACTCACTCACG 60.301 63.158 0.00 0.00 0.00 4.35
423 4219 1.956170 CACCACCACTCACTCACGC 60.956 63.158 0.00 0.00 0.00 5.34
424 4220 2.734723 CCACCACTCACTCACGCG 60.735 66.667 3.53 3.53 0.00 6.01
466 4262 2.575993 CACTCCTCACAGCTCCCG 59.424 66.667 0.00 0.00 0.00 5.14
625 4424 4.189231 GTGTATTTCGGCTACAACCTGAT 58.811 43.478 0.00 0.00 31.27 2.90
1236 5037 1.142097 GCTCGGCCTCTACTGGAAC 59.858 63.158 0.00 0.00 0.00 3.62
1303 5104 1.127343 CCTGGAGTCCCTCTTCATCC 58.873 60.000 6.74 0.00 30.31 3.51
1492 5293 1.151668 CACCAGGAAACGCTCTTCTG 58.848 55.000 0.00 0.00 0.00 3.02
1506 5307 4.260170 GCTCTTCTGTGATCAAGATTGGT 58.740 43.478 0.00 0.00 0.00 3.67
1982 6486 0.683973 AGAGTCCACTGCAAGGTGAG 59.316 55.000 7.62 0.00 39.30 3.51
1998 6502 2.288666 GTGAGTGTCAAGTTCTGGCAA 58.711 47.619 0.00 0.00 42.62 4.52
2141 6645 0.895100 CAGATGGTGGTTGTGGTGGG 60.895 60.000 0.00 0.00 0.00 4.61
2417 6926 1.938585 AGACTGCTGGTACCTTGCTA 58.061 50.000 23.73 13.50 0.00 3.49
2424 6933 3.072476 TGCTGGTACCTTGCTAGACTTTT 59.928 43.478 23.73 0.00 0.00 2.27
2438 6947 2.431782 AGACTTTTTGTTGTGGCAGCAT 59.568 40.909 0.00 0.00 0.00 3.79
2515 7025 4.012374 ACATGATGAGGATGTTTGTGTCC 58.988 43.478 0.00 0.00 29.39 4.02
2528 7038 7.339466 GGATGTTTGTGTCCAATTAAGTCCTAT 59.661 37.037 0.00 0.00 34.57 2.57
2535 7046 8.325787 TGTGTCCAATTAAGTCCTATTATGTGT 58.674 33.333 0.00 0.00 0.00 3.72
2559 7070 2.098117 GGATGCTATGTTGTGGCTTGTC 59.902 50.000 0.00 0.00 34.98 3.18
2567 7078 2.747989 TGTTGTGGCTTGTCGTTTGTTA 59.252 40.909 0.00 0.00 0.00 2.41
2572 7083 4.034279 TGTGGCTTGTCGTTTGTTAGTTAC 59.966 41.667 0.00 0.00 0.00 2.50
2573 7084 4.271776 GTGGCTTGTCGTTTGTTAGTTACT 59.728 41.667 0.00 0.00 0.00 2.24
2574 7085 5.463061 GTGGCTTGTCGTTTGTTAGTTACTA 59.537 40.000 0.00 0.00 0.00 1.82
2575 7086 5.693104 TGGCTTGTCGTTTGTTAGTTACTAG 59.307 40.000 0.00 0.00 0.00 2.57
2576 7087 5.922544 GGCTTGTCGTTTGTTAGTTACTAGA 59.077 40.000 0.00 0.00 0.00 2.43
2577 7088 6.589139 GGCTTGTCGTTTGTTAGTTACTAGAT 59.411 38.462 0.00 0.00 0.00 1.98
2578 7089 7.411588 GGCTTGTCGTTTGTTAGTTACTAGATG 60.412 40.741 0.00 0.00 0.00 2.90
2579 7090 7.327761 GCTTGTCGTTTGTTAGTTACTAGATGA 59.672 37.037 0.00 0.00 0.00 2.92
2580 7091 8.511465 TTGTCGTTTGTTAGTTACTAGATGAC 57.489 34.615 0.00 3.28 0.00 3.06
2581 7092 7.086376 TGTCGTTTGTTAGTTACTAGATGACC 58.914 38.462 0.00 0.00 0.00 4.02
2582 7093 7.040201 TGTCGTTTGTTAGTTACTAGATGACCT 60.040 37.037 0.00 0.00 0.00 3.85
2583 7094 7.272948 GTCGTTTGTTAGTTACTAGATGACCTG 59.727 40.741 0.00 0.00 0.00 4.00
2584 7095 7.040201 TCGTTTGTTAGTTACTAGATGACCTGT 60.040 37.037 0.00 0.00 0.00 4.00
2585 7096 7.272948 CGTTTGTTAGTTACTAGATGACCTGTC 59.727 40.741 0.00 0.00 0.00 3.51
2586 7097 6.432607 TGTTAGTTACTAGATGACCTGTCG 57.567 41.667 0.00 0.00 0.00 4.35
2587 7098 5.163683 TGTTAGTTACTAGATGACCTGTCGC 60.164 44.000 0.00 0.00 0.00 5.19
2588 7099 2.355132 AGTTACTAGATGACCTGTCGCG 59.645 50.000 0.00 0.00 0.00 5.87
2589 7100 0.661552 TACTAGATGACCTGTCGCGC 59.338 55.000 0.00 0.00 0.00 6.86
2590 7101 1.299468 CTAGATGACCTGTCGCGCC 60.299 63.158 0.00 0.00 0.00 6.53
2591 7102 2.004808 CTAGATGACCTGTCGCGCCA 62.005 60.000 0.00 0.00 0.00 5.69
2592 7103 1.391933 TAGATGACCTGTCGCGCCAT 61.392 55.000 0.00 0.00 0.00 4.40
2593 7104 1.815421 GATGACCTGTCGCGCCATT 60.815 57.895 0.00 0.00 0.00 3.16
2594 7105 1.369091 GATGACCTGTCGCGCCATTT 61.369 55.000 0.00 0.00 0.00 2.32
2595 7106 1.647545 ATGACCTGTCGCGCCATTTG 61.648 55.000 0.00 0.00 0.00 2.32
2596 7107 3.039202 GACCTGTCGCGCCATTTGG 62.039 63.158 0.00 0.00 38.53 3.28
2606 7117 4.520846 CCATTTGGCGCGCGAGAC 62.521 66.667 37.18 22.76 0.00 3.36
2607 7118 3.787676 CATTTGGCGCGCGAGACA 61.788 61.111 37.18 25.24 0.00 3.41
2608 7119 3.047280 ATTTGGCGCGCGAGACAA 61.047 55.556 37.18 27.75 0.00 3.18
2609 7120 2.612567 ATTTGGCGCGCGAGACAAA 61.613 52.632 39.05 39.05 36.02 2.83
2610 7121 1.922135 ATTTGGCGCGCGAGACAAAT 61.922 50.000 39.66 39.66 36.96 2.32
2611 7122 2.123988 TTTGGCGCGCGAGACAAATT 62.124 50.000 35.20 0.00 0.00 1.82
2612 7123 2.123988 TTGGCGCGCGAGACAAATTT 62.124 50.000 37.18 0.00 0.00 1.82
2613 7124 2.145905 GGCGCGCGAGACAAATTTG 61.146 57.895 37.18 16.67 0.00 2.32
2614 7125 1.154488 GCGCGCGAGACAAATTTGA 60.154 52.632 37.18 0.00 0.00 2.69
2615 7126 0.724453 GCGCGCGAGACAAATTTGAA 60.724 50.000 37.18 0.00 0.00 2.69
2616 7127 1.241744 CGCGCGAGACAAATTTGAAG 58.758 50.000 28.94 12.51 0.00 3.02
2617 7128 0.977674 GCGCGAGACAAATTTGAAGC 59.022 50.000 24.64 19.33 0.00 3.86
2618 7129 1.662876 GCGCGAGACAAATTTGAAGCA 60.663 47.619 24.64 0.00 0.00 3.91
2619 7130 2.649516 CGCGAGACAAATTTGAAGCAA 58.350 42.857 24.64 0.00 0.00 3.91
2620 7131 2.653584 CGCGAGACAAATTTGAAGCAAG 59.346 45.455 24.64 10.94 0.00 4.01
2621 7132 3.606846 CGCGAGACAAATTTGAAGCAAGA 60.607 43.478 24.64 0.00 0.00 3.02
2622 7133 4.290155 GCGAGACAAATTTGAAGCAAGAA 58.710 39.130 24.64 0.00 0.00 2.52
2623 7134 4.147133 GCGAGACAAATTTGAAGCAAGAAC 59.853 41.667 24.64 1.64 0.00 3.01
2624 7135 5.514279 CGAGACAAATTTGAAGCAAGAACT 58.486 37.500 24.64 8.64 0.00 3.01
2625 7136 6.658831 CGAGACAAATTTGAAGCAAGAACTA 58.341 36.000 24.64 0.00 0.00 2.24
2626 7137 7.132213 CGAGACAAATTTGAAGCAAGAACTAA 58.868 34.615 24.64 0.00 0.00 2.24
2627 7138 7.643764 CGAGACAAATTTGAAGCAAGAACTAAA 59.356 33.333 24.64 0.00 0.00 1.85
2628 7139 9.301153 GAGACAAATTTGAAGCAAGAACTAAAA 57.699 29.630 24.64 0.00 0.00 1.52
2629 7140 9.305925 AGACAAATTTGAAGCAAGAACTAAAAG 57.694 29.630 24.64 0.00 0.00 2.27
2630 7141 9.301153 GACAAATTTGAAGCAAGAACTAAAAGA 57.699 29.630 24.64 0.00 0.00 2.52
2631 7142 9.305925 ACAAATTTGAAGCAAGAACTAAAAGAG 57.694 29.630 24.64 0.00 0.00 2.85
2632 7143 9.520204 CAAATTTGAAGCAAGAACTAAAAGAGA 57.480 29.630 13.08 0.00 0.00 3.10
2637 7148 9.561069 TTGAAGCAAGAACTAAAAGAGATTACT 57.439 29.630 0.00 0.00 0.00 2.24
2638 7149 9.561069 TGAAGCAAGAACTAAAAGAGATTACTT 57.439 29.630 0.00 0.00 0.00 2.24
2641 7152 9.343539 AGCAAGAACTAAAAGAGATTACTTTGT 57.656 29.630 0.00 0.00 39.57 2.83
2642 7153 9.952188 GCAAGAACTAAAAGAGATTACTTTGTT 57.048 29.630 0.00 0.00 39.57 2.83
2662 7173 2.172851 TTTTTGGTAGCGGACGATGT 57.827 45.000 0.00 0.00 0.00 3.06
2663 7174 2.172851 TTTTGGTAGCGGACGATGTT 57.827 45.000 0.00 0.00 0.00 2.71
2664 7175 3.316071 TTTTGGTAGCGGACGATGTTA 57.684 42.857 0.00 0.00 0.00 2.41
2665 7176 3.316071 TTTGGTAGCGGACGATGTTAA 57.684 42.857 0.00 0.00 0.00 2.01
2666 7177 3.530265 TTGGTAGCGGACGATGTTAAT 57.470 42.857 0.00 0.00 0.00 1.40
2667 7178 2.816689 TGGTAGCGGACGATGTTAATG 58.183 47.619 0.00 0.00 0.00 1.90
2668 7179 2.166870 TGGTAGCGGACGATGTTAATGT 59.833 45.455 0.00 0.00 0.00 2.71
2669 7180 3.380954 TGGTAGCGGACGATGTTAATGTA 59.619 43.478 0.00 0.00 0.00 2.29
2670 7181 4.038282 TGGTAGCGGACGATGTTAATGTAT 59.962 41.667 0.00 0.00 0.00 2.29
2671 7182 5.241285 TGGTAGCGGACGATGTTAATGTATA 59.759 40.000 0.00 0.00 0.00 1.47
2672 7183 5.570589 GGTAGCGGACGATGTTAATGTATAC 59.429 44.000 0.00 0.00 0.00 1.47
2673 7184 5.449107 AGCGGACGATGTTAATGTATACT 57.551 39.130 4.17 0.00 0.00 2.12
2674 7185 5.839621 AGCGGACGATGTTAATGTATACTT 58.160 37.500 4.17 0.00 0.00 2.24
2675 7186 6.278363 AGCGGACGATGTTAATGTATACTTT 58.722 36.000 4.17 6.83 0.00 2.66
2676 7187 6.759827 AGCGGACGATGTTAATGTATACTTTT 59.240 34.615 9.08 3.62 0.00 2.27
2677 7188 7.279313 AGCGGACGATGTTAATGTATACTTTTT 59.721 33.333 9.08 1.38 0.00 1.94
2695 7206 4.545823 TTTTTGTGAAGTGTCGTGGATC 57.454 40.909 0.00 0.00 0.00 3.36
2696 7207 3.469008 TTTGTGAAGTGTCGTGGATCT 57.531 42.857 0.00 0.00 0.00 2.75
2697 7208 2.438868 TGTGAAGTGTCGTGGATCTG 57.561 50.000 0.00 0.00 0.00 2.90
2698 7209 1.686587 TGTGAAGTGTCGTGGATCTGT 59.313 47.619 0.00 0.00 0.00 3.41
2699 7210 2.888414 TGTGAAGTGTCGTGGATCTGTA 59.112 45.455 0.00 0.00 0.00 2.74
2700 7211 3.509967 TGTGAAGTGTCGTGGATCTGTAT 59.490 43.478 0.00 0.00 0.00 2.29
2701 7212 4.703093 TGTGAAGTGTCGTGGATCTGTATA 59.297 41.667 0.00 0.00 0.00 1.47
2702 7213 5.184287 TGTGAAGTGTCGTGGATCTGTATAA 59.816 40.000 0.00 0.00 0.00 0.98
2703 7214 6.127451 TGTGAAGTGTCGTGGATCTGTATAAT 60.127 38.462 0.00 0.00 0.00 1.28
2704 7215 6.757010 GTGAAGTGTCGTGGATCTGTATAATT 59.243 38.462 0.00 0.00 0.00 1.40
2705 7216 7.277981 GTGAAGTGTCGTGGATCTGTATAATTT 59.722 37.037 0.00 0.00 0.00 1.82
2706 7217 7.822334 TGAAGTGTCGTGGATCTGTATAATTTT 59.178 33.333 0.00 0.00 0.00 1.82
2707 7218 8.561738 AAGTGTCGTGGATCTGTATAATTTTT 57.438 30.769 0.00 0.00 0.00 1.94
2750 7261 9.853555 ATATGAAACTGATAAAATTGACGCAAA 57.146 25.926 0.00 0.00 0.00 3.68
2751 7262 7.993821 TGAAACTGATAAAATTGACGCAAAA 57.006 28.000 0.00 0.00 0.00 2.44
2752 7263 8.586570 TGAAACTGATAAAATTGACGCAAAAT 57.413 26.923 0.00 0.00 0.00 1.82
2753 7264 8.698854 TGAAACTGATAAAATTGACGCAAAATC 58.301 29.630 0.00 0.78 0.00 2.17
2754 7265 7.581011 AACTGATAAAATTGACGCAAAATCC 57.419 32.000 0.00 0.00 0.00 3.01
2755 7266 6.099341 ACTGATAAAATTGACGCAAAATCCC 58.901 36.000 0.00 0.00 0.00 3.85
2756 7267 6.030548 TGATAAAATTGACGCAAAATCCCA 57.969 33.333 0.00 0.00 0.00 4.37
2757 7268 6.459066 TGATAAAATTGACGCAAAATCCCAA 58.541 32.000 0.00 0.00 0.00 4.12
2758 7269 6.367422 TGATAAAATTGACGCAAAATCCCAAC 59.633 34.615 0.00 0.00 0.00 3.77
2759 7270 4.335400 AAATTGACGCAAAATCCCAACT 57.665 36.364 0.00 0.00 0.00 3.16
2760 7271 2.791383 TTGACGCAAAATCCCAACTG 57.209 45.000 0.00 0.00 0.00 3.16
2761 7272 1.974265 TGACGCAAAATCCCAACTGA 58.026 45.000 0.00 0.00 0.00 3.41
2762 7273 2.302260 TGACGCAAAATCCCAACTGAA 58.698 42.857 0.00 0.00 0.00 3.02
2763 7274 2.690497 TGACGCAAAATCCCAACTGAAA 59.310 40.909 0.00 0.00 0.00 2.69
2764 7275 3.049912 GACGCAAAATCCCAACTGAAAC 58.950 45.455 0.00 0.00 0.00 2.78
2765 7276 2.050691 CGCAAAATCCCAACTGAAACG 58.949 47.619 0.00 0.00 0.00 3.60
2766 7277 2.287308 CGCAAAATCCCAACTGAAACGA 60.287 45.455 0.00 0.00 0.00 3.85
2767 7278 3.712187 GCAAAATCCCAACTGAAACGAA 58.288 40.909 0.00 0.00 0.00 3.85
2768 7279 3.735746 GCAAAATCCCAACTGAAACGAAG 59.264 43.478 0.00 0.00 0.00 3.79
2769 7280 4.499019 GCAAAATCCCAACTGAAACGAAGA 60.499 41.667 0.00 0.00 0.00 2.87
2770 7281 5.587289 CAAAATCCCAACTGAAACGAAGAA 58.413 37.500 0.00 0.00 0.00 2.52
2771 7282 4.830826 AATCCCAACTGAAACGAAGAAC 57.169 40.909 0.00 0.00 0.00 3.01
2772 7283 3.269538 TCCCAACTGAAACGAAGAACA 57.730 42.857 0.00 0.00 0.00 3.18
2773 7284 3.611970 TCCCAACTGAAACGAAGAACAA 58.388 40.909 0.00 0.00 0.00 2.83
2774 7285 4.011023 TCCCAACTGAAACGAAGAACAAA 58.989 39.130 0.00 0.00 0.00 2.83
2775 7286 4.459685 TCCCAACTGAAACGAAGAACAAAA 59.540 37.500 0.00 0.00 0.00 2.44
2776 7287 5.126384 TCCCAACTGAAACGAAGAACAAAAT 59.874 36.000 0.00 0.00 0.00 1.82
2777 7288 5.231991 CCCAACTGAAACGAAGAACAAAATG 59.768 40.000 0.00 0.00 0.00 2.32
2778 7289 5.276348 CCAACTGAAACGAAGAACAAAATGC 60.276 40.000 0.00 0.00 0.00 3.56
2779 7290 4.992688 ACTGAAACGAAGAACAAAATGCA 58.007 34.783 0.00 0.00 0.00 3.96
2780 7291 5.406649 ACTGAAACGAAGAACAAAATGCAA 58.593 33.333 0.00 0.00 0.00 4.08
2781 7292 5.866633 ACTGAAACGAAGAACAAAATGCAAA 59.133 32.000 0.00 0.00 0.00 3.68
2782 7293 6.534793 ACTGAAACGAAGAACAAAATGCAAAT 59.465 30.769 0.00 0.00 0.00 2.32
2783 7294 6.703857 TGAAACGAAGAACAAAATGCAAATG 58.296 32.000 0.00 0.00 0.00 2.32
2784 7295 6.312426 TGAAACGAAGAACAAAATGCAAATGT 59.688 30.769 0.00 0.00 0.00 2.71
2785 7296 6.660887 AACGAAGAACAAAATGCAAATGTT 57.339 29.167 13.04 13.04 39.82 2.71
2786 7297 6.660887 ACGAAGAACAAAATGCAAATGTTT 57.339 29.167 14.00 0.00 37.41 2.83
2787 7298 6.476896 ACGAAGAACAAAATGCAAATGTTTG 58.523 32.000 14.00 12.79 37.41 2.93
2788 7299 6.312426 ACGAAGAACAAAATGCAAATGTTTGA 59.688 30.769 17.31 0.00 40.55 2.69
2789 7300 6.842282 CGAAGAACAAAATGCAAATGTTTGAG 59.158 34.615 17.31 7.63 40.55 3.02
2790 7301 7.464444 CGAAGAACAAAATGCAAATGTTTGAGT 60.464 33.333 17.31 8.39 40.55 3.41
2791 7302 7.614124 AGAACAAAATGCAAATGTTTGAGTT 57.386 28.000 17.31 10.25 40.55 3.01
2792 7303 8.042944 AGAACAAAATGCAAATGTTTGAGTTT 57.957 26.923 17.31 6.27 40.55 2.66
2793 7304 7.964011 AGAACAAAATGCAAATGTTTGAGTTTG 59.036 29.630 17.31 18.11 40.55 2.93
2804 7315 9.033481 CAAATGTTTGAGTTTGCAATTAGAAGA 57.967 29.630 0.00 0.00 40.55 2.87
2805 7316 9.768662 AAATGTTTGAGTTTGCAATTAGAAGAT 57.231 25.926 0.00 0.00 0.00 2.40
2806 7317 9.768662 AATGTTTGAGTTTGCAATTAGAAGATT 57.231 25.926 0.00 0.41 0.00 2.40
2807 7318 8.801715 TGTTTGAGTTTGCAATTAGAAGATTC 57.198 30.769 0.00 0.00 0.00 2.52
2808 7319 8.412456 TGTTTGAGTTTGCAATTAGAAGATTCA 58.588 29.630 0.00 0.00 0.00 2.57
2809 7320 9.248291 GTTTGAGTTTGCAATTAGAAGATTCAA 57.752 29.630 0.00 0.00 0.00 2.69
2810 7321 9.467258 TTTGAGTTTGCAATTAGAAGATTCAAG 57.533 29.630 0.00 0.00 0.00 3.02
2811 7322 8.169977 TGAGTTTGCAATTAGAAGATTCAAGT 57.830 30.769 0.00 0.00 0.00 3.16
2812 7323 9.283768 TGAGTTTGCAATTAGAAGATTCAAGTA 57.716 29.630 0.00 0.00 0.00 2.24
2813 7324 9.766277 GAGTTTGCAATTAGAAGATTCAAGTAG 57.234 33.333 0.00 0.00 0.00 2.57
2814 7325 8.239998 AGTTTGCAATTAGAAGATTCAAGTAGC 58.760 33.333 0.00 0.00 0.00 3.58
2815 7326 7.928307 TTGCAATTAGAAGATTCAAGTAGCT 57.072 32.000 0.00 0.00 0.00 3.32
2816 7327 9.448438 TTTGCAATTAGAAGATTCAAGTAGCTA 57.552 29.630 0.00 0.00 0.00 3.32
2817 7328 9.618890 TTGCAATTAGAAGATTCAAGTAGCTAT 57.381 29.630 0.00 0.00 0.00 2.97
2824 7335 8.112016 AGAAGATTCAAGTAGCTATATACGCA 57.888 34.615 0.00 0.00 0.00 5.24
2825 7336 8.240682 AGAAGATTCAAGTAGCTATATACGCAG 58.759 37.037 0.00 0.00 0.00 5.18
2826 7337 6.857956 AGATTCAAGTAGCTATATACGCAGG 58.142 40.000 0.00 0.00 0.00 4.85
2827 7338 6.434652 AGATTCAAGTAGCTATATACGCAGGT 59.565 38.462 0.00 0.00 0.00 4.00
2828 7339 5.372547 TCAAGTAGCTATATACGCAGGTG 57.627 43.478 0.00 0.00 0.00 4.00
2829 7340 4.217767 TCAAGTAGCTATATACGCAGGTGG 59.782 45.833 0.00 0.00 0.00 4.61
2830 7341 2.492484 AGTAGCTATATACGCAGGTGGC 59.508 50.000 0.00 0.00 39.90 5.01
2831 7342 1.338107 AGCTATATACGCAGGTGGCA 58.662 50.000 0.00 0.00 45.17 4.92
2832 7343 1.000955 AGCTATATACGCAGGTGGCAC 59.999 52.381 9.70 9.70 45.17 5.01
2833 7344 1.270094 GCTATATACGCAGGTGGCACA 60.270 52.381 20.82 0.00 45.17 4.57
2834 7345 2.805295 GCTATATACGCAGGTGGCACAA 60.805 50.000 20.82 0.00 44.16 3.33
2835 7346 2.638480 ATATACGCAGGTGGCACAAT 57.362 45.000 20.82 4.15 44.16 2.71
2836 7347 3.762407 ATATACGCAGGTGGCACAATA 57.238 42.857 20.82 7.15 44.16 1.90
2837 7348 2.411628 ATACGCAGGTGGCACAATAA 57.588 45.000 20.82 0.00 44.16 1.40
2838 7349 2.186532 TACGCAGGTGGCACAATAAA 57.813 45.000 20.82 0.00 44.16 1.40
2839 7350 1.323412 ACGCAGGTGGCACAATAAAA 58.677 45.000 20.82 0.00 44.16 1.52
2840 7351 1.892474 ACGCAGGTGGCACAATAAAAT 59.108 42.857 20.82 0.00 44.16 1.82
2841 7352 2.261345 CGCAGGTGGCACAATAAAATG 58.739 47.619 20.82 6.94 44.16 2.32
2842 7353 2.001872 GCAGGTGGCACAATAAAATGC 58.998 47.619 20.82 12.65 44.16 3.56
2843 7354 2.612471 GCAGGTGGCACAATAAAATGCA 60.612 45.455 20.82 0.00 44.16 3.96
2844 7355 2.995258 CAGGTGGCACAATAAAATGCAC 59.005 45.455 20.82 0.00 44.16 4.57
2845 7356 2.899256 AGGTGGCACAATAAAATGCACT 59.101 40.909 20.82 0.00 44.16 4.40
2846 7357 4.082300 CAGGTGGCACAATAAAATGCACTA 60.082 41.667 20.82 0.00 44.16 2.74
2847 7358 4.526262 AGGTGGCACAATAAAATGCACTAA 59.474 37.500 20.82 0.00 44.16 2.24
2848 7359 5.011533 AGGTGGCACAATAAAATGCACTAAA 59.988 36.000 20.82 0.00 44.16 1.85
2849 7360 5.348451 GGTGGCACAATAAAATGCACTAAAG 59.652 40.000 20.82 0.00 44.16 1.85
2850 7361 6.155827 GTGGCACAATAAAATGCACTAAAGA 58.844 36.000 13.86 0.00 44.16 2.52
2851 7362 6.089417 GTGGCACAATAAAATGCACTAAAGAC 59.911 38.462 13.86 0.00 44.16 3.01
2852 7363 6.155827 GGCACAATAAAATGCACTAAAGACA 58.844 36.000 0.00 0.00 43.93 3.41
2853 7364 6.813152 GGCACAATAAAATGCACTAAAGACAT 59.187 34.615 0.00 0.00 43.93 3.06
2854 7365 7.201461 GGCACAATAAAATGCACTAAAGACATG 60.201 37.037 0.00 0.00 43.93 3.21
2855 7366 7.541783 GCACAATAAAATGCACTAAAGACATGA 59.458 33.333 0.00 0.00 41.65 3.07
2856 7367 9.577110 CACAATAAAATGCACTAAAGACATGAT 57.423 29.630 0.00 0.00 0.00 2.45
2866 7377 9.645059 TGCACTAAAGACATGATAATATAGAGC 57.355 33.333 0.00 5.32 0.00 4.09
2867 7378 9.645059 GCACTAAAGACATGATAATATAGAGCA 57.355 33.333 0.00 0.00 0.00 4.26
2874 7385 9.650539 AGACATGATAATATAGAGCATTGTGTC 57.349 33.333 0.00 0.00 0.00 3.67
2875 7386 8.783833 ACATGATAATATAGAGCATTGTGTCC 57.216 34.615 0.00 0.00 0.00 4.02
2876 7387 8.377799 ACATGATAATATAGAGCATTGTGTCCA 58.622 33.333 0.00 0.00 0.00 4.02
2877 7388 8.880750 CATGATAATATAGAGCATTGTGTCCAG 58.119 37.037 0.00 0.00 0.00 3.86
2878 7389 7.389232 TGATAATATAGAGCATTGTGTCCAGG 58.611 38.462 0.00 0.00 0.00 4.45
2879 7390 5.894298 AATATAGAGCATTGTGTCCAGGA 57.106 39.130 0.00 0.00 0.00 3.86
2880 7391 3.834489 ATAGAGCATTGTGTCCAGGAG 57.166 47.619 0.00 0.00 0.00 3.69
2881 7392 0.035630 AGAGCATTGTGTCCAGGAGC 60.036 55.000 0.00 0.00 0.00 4.70
2882 7393 0.321919 GAGCATTGTGTCCAGGAGCA 60.322 55.000 0.00 0.00 0.00 4.26
2883 7394 0.607489 AGCATTGTGTCCAGGAGCAC 60.607 55.000 12.77 12.77 36.26 4.40
2884 7395 0.607489 GCATTGTGTCCAGGAGCACT 60.607 55.000 17.83 2.12 36.63 4.40
2885 7396 1.901591 CATTGTGTCCAGGAGCACTT 58.098 50.000 17.83 7.56 36.63 3.16
2886 7397 1.808945 CATTGTGTCCAGGAGCACTTC 59.191 52.381 17.83 0.00 36.63 3.01
2887 7398 1.131638 TTGTGTCCAGGAGCACTTCT 58.868 50.000 17.83 0.00 36.63 2.85
2888 7399 1.131638 TGTGTCCAGGAGCACTTCTT 58.868 50.000 17.83 0.00 36.63 2.52
2889 7400 2.325484 TGTGTCCAGGAGCACTTCTTA 58.675 47.619 17.83 1.43 36.63 2.10
2890 7401 2.300152 TGTGTCCAGGAGCACTTCTTAG 59.700 50.000 17.83 0.00 36.63 2.18
2891 7402 2.300437 GTGTCCAGGAGCACTTCTTAGT 59.700 50.000 12.51 0.00 34.00 2.24
2904 7415 5.700402 ACTTCTTAGTGATAGTGGCCAAT 57.300 39.130 11.94 11.94 31.99 3.16
2905 7416 6.067217 ACTTCTTAGTGATAGTGGCCAATT 57.933 37.500 12.70 3.11 31.99 2.32
2906 7417 7.195374 ACTTCTTAGTGATAGTGGCCAATTA 57.805 36.000 12.70 5.76 31.99 1.40
2907 7418 7.048512 ACTTCTTAGTGATAGTGGCCAATTAC 58.951 38.462 12.70 7.69 31.99 1.89
2908 7419 6.553953 TCTTAGTGATAGTGGCCAATTACA 57.446 37.500 12.70 9.55 0.00 2.41
2909 7420 7.136822 TCTTAGTGATAGTGGCCAATTACAT 57.863 36.000 12.70 0.00 0.00 2.29
2910 7421 7.217200 TCTTAGTGATAGTGGCCAATTACATC 58.783 38.462 12.70 9.41 0.00 3.06
2911 7422 5.372343 AGTGATAGTGGCCAATTACATCA 57.628 39.130 12.70 12.28 0.00 3.07
2912 7423 5.945310 AGTGATAGTGGCCAATTACATCAT 58.055 37.500 12.70 0.00 0.00 2.45
2913 7424 7.078249 AGTGATAGTGGCCAATTACATCATA 57.922 36.000 12.70 0.00 0.00 2.15
2914 7425 6.936900 AGTGATAGTGGCCAATTACATCATAC 59.063 38.462 12.70 4.07 0.00 2.39
2915 7426 6.149474 GTGATAGTGGCCAATTACATCATACC 59.851 42.308 12.70 0.00 0.00 2.73
2916 7427 4.796110 AGTGGCCAATTACATCATACCT 57.204 40.909 7.24 0.00 0.00 3.08
2917 7428 4.718961 AGTGGCCAATTACATCATACCTC 58.281 43.478 7.24 0.00 0.00 3.85
2918 7429 3.821033 GTGGCCAATTACATCATACCTCC 59.179 47.826 7.24 0.00 0.00 4.30
2919 7430 3.074412 GGCCAATTACATCATACCTCCG 58.926 50.000 0.00 0.00 0.00 4.63
2920 7431 3.496160 GGCCAATTACATCATACCTCCGT 60.496 47.826 0.00 0.00 0.00 4.69
2921 7432 3.746492 GCCAATTACATCATACCTCCGTC 59.254 47.826 0.00 0.00 0.00 4.79
2922 7433 4.315803 CCAATTACATCATACCTCCGTCC 58.684 47.826 0.00 0.00 0.00 4.79
2923 7434 3.936372 ATTACATCATACCTCCGTCCG 57.064 47.619 0.00 0.00 0.00 4.79
2924 7435 2.643995 TACATCATACCTCCGTCCGA 57.356 50.000 0.00 0.00 0.00 4.55
2925 7436 1.771565 ACATCATACCTCCGTCCGAA 58.228 50.000 0.00 0.00 0.00 4.30
2926 7437 2.104967 ACATCATACCTCCGTCCGAAA 58.895 47.619 0.00 0.00 0.00 3.46
2927 7438 2.498481 ACATCATACCTCCGTCCGAAAA 59.502 45.455 0.00 0.00 0.00 2.29
2928 7439 3.055675 ACATCATACCTCCGTCCGAAAAA 60.056 43.478 0.00 0.00 0.00 1.94
2929 7440 3.241067 TCATACCTCCGTCCGAAAAAG 57.759 47.619 0.00 0.00 0.00 2.27
2930 7441 2.564062 TCATACCTCCGTCCGAAAAAGT 59.436 45.455 0.00 0.00 0.00 2.66
2931 7442 3.007182 TCATACCTCCGTCCGAAAAAGTT 59.993 43.478 0.00 0.00 0.00 2.66
2932 7443 2.336945 ACCTCCGTCCGAAAAAGTTT 57.663 45.000 0.00 0.00 0.00 2.66
2933 7444 1.944709 ACCTCCGTCCGAAAAAGTTTG 59.055 47.619 0.00 0.00 0.00 2.93
2934 7445 1.944709 CCTCCGTCCGAAAAAGTTTGT 59.055 47.619 0.00 0.00 0.00 2.83
2935 7446 2.286772 CCTCCGTCCGAAAAAGTTTGTG 60.287 50.000 0.00 0.00 0.00 3.33
2936 7447 1.064357 TCCGTCCGAAAAAGTTTGTGC 59.936 47.619 0.00 0.00 0.00 4.57
2937 7448 1.472990 CGTCCGAAAAAGTTTGTGCC 58.527 50.000 0.00 0.00 0.00 5.01
2938 7449 1.202200 CGTCCGAAAAAGTTTGTGCCA 60.202 47.619 0.00 0.00 0.00 4.92
2939 7450 2.732597 CGTCCGAAAAAGTTTGTGCCAA 60.733 45.455 0.00 0.00 0.00 4.52
2940 7451 2.857748 GTCCGAAAAAGTTTGTGCCAAG 59.142 45.455 0.00 0.00 0.00 3.61
2941 7452 1.592543 CCGAAAAAGTTTGTGCCAAGC 59.407 47.619 0.00 0.00 0.00 4.01
2942 7453 2.539476 CGAAAAAGTTTGTGCCAAGCT 58.461 42.857 0.00 0.00 0.00 3.74
2943 7454 2.929398 CGAAAAAGTTTGTGCCAAGCTT 59.071 40.909 9.94 9.94 0.00 3.74
2944 7455 3.242059 CGAAAAAGTTTGTGCCAAGCTTG 60.242 43.478 19.93 19.93 0.00 4.01
2945 7456 3.333029 AAAAGTTTGTGCCAAGCTTGT 57.667 38.095 24.35 8.75 0.00 3.16
2946 7457 3.333029 AAAGTTTGTGCCAAGCTTGTT 57.667 38.095 24.35 7.24 0.00 2.83
2947 7458 2.584492 AGTTTGTGCCAAGCTTGTTC 57.416 45.000 24.35 15.82 0.00 3.18
2948 7459 1.136891 AGTTTGTGCCAAGCTTGTTCC 59.863 47.619 24.35 12.85 0.00 3.62
2949 7460 1.136891 GTTTGTGCCAAGCTTGTTCCT 59.863 47.619 24.35 0.00 0.00 3.36
2950 7461 1.032014 TTGTGCCAAGCTTGTTCCTC 58.968 50.000 24.35 13.15 0.00 3.71
2951 7462 0.106769 TGTGCCAAGCTTGTTCCTCA 60.107 50.000 24.35 15.25 0.00 3.86
2952 7463 1.032014 GTGCCAAGCTTGTTCCTCAA 58.968 50.000 24.35 0.00 34.61 3.02
2953 7464 1.408702 GTGCCAAGCTTGTTCCTCAAA 59.591 47.619 24.35 0.00 35.48 2.69
2954 7465 2.036346 GTGCCAAGCTTGTTCCTCAAAT 59.964 45.455 24.35 0.00 35.48 2.32
2955 7466 2.036217 TGCCAAGCTTGTTCCTCAAATG 59.964 45.455 24.35 6.67 35.48 2.32
2956 7467 2.611224 GCCAAGCTTGTTCCTCAAATGG 60.611 50.000 24.35 6.99 37.38 3.16
2957 7468 2.892852 CCAAGCTTGTTCCTCAAATGGA 59.107 45.455 24.35 0.00 36.92 3.41
2958 7469 3.512724 CCAAGCTTGTTCCTCAAATGGAT 59.487 43.478 24.35 0.00 36.92 3.41
2959 7470 4.491676 CAAGCTTGTTCCTCAAATGGATG 58.508 43.478 18.65 0.00 35.83 3.51
2960 7471 3.771216 AGCTTGTTCCTCAAATGGATGT 58.229 40.909 0.00 0.00 35.83 3.06
2961 7472 4.922206 AGCTTGTTCCTCAAATGGATGTA 58.078 39.130 0.00 0.00 35.83 2.29
2962 7473 5.513233 AGCTTGTTCCTCAAATGGATGTAT 58.487 37.500 0.00 0.00 35.83 2.29
2963 7474 5.591877 AGCTTGTTCCTCAAATGGATGTATC 59.408 40.000 0.00 0.00 35.83 2.24
2964 7475 5.591877 GCTTGTTCCTCAAATGGATGTATCT 59.408 40.000 0.00 0.00 35.83 1.98
2965 7476 6.767902 GCTTGTTCCTCAAATGGATGTATCTA 59.232 38.462 0.00 0.00 35.83 1.98
2966 7477 7.041508 GCTTGTTCCTCAAATGGATGTATCTAG 60.042 40.741 0.00 0.00 35.83 2.43
2967 7478 6.291377 TGTTCCTCAAATGGATGTATCTAGC 58.709 40.000 0.00 0.00 35.83 3.42
2968 7479 6.126796 TGTTCCTCAAATGGATGTATCTAGCA 60.127 38.462 0.00 0.00 35.83 3.49
2969 7480 5.858381 TCCTCAAATGGATGTATCTAGCAC 58.142 41.667 0.00 0.00 0.00 4.40
2970 7481 5.604231 TCCTCAAATGGATGTATCTAGCACT 59.396 40.000 0.00 0.00 0.00 4.40
2971 7482 6.782494 TCCTCAAATGGATGTATCTAGCACTA 59.218 38.462 0.00 0.00 0.00 2.74
2972 7483 7.290014 TCCTCAAATGGATGTATCTAGCACTAA 59.710 37.037 0.00 0.00 0.00 2.24
2973 7484 7.386299 CCTCAAATGGATGTATCTAGCACTAAC 59.614 40.741 0.00 0.00 0.00 2.34
2974 7485 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
2975 7486 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
2976 7487 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
2977 7488 7.603180 ATGGATGTATCTAGCACTAACTTGA 57.397 36.000 0.00 0.00 0.00 3.02
2978 7489 7.603180 TGGATGTATCTAGCACTAACTTGAT 57.397 36.000 0.00 0.00 36.37 2.57
2979 7490 7.436933 TGGATGTATCTAGCACTAACTTGATG 58.563 38.462 0.00 0.00 34.60 3.07
2980 7491 6.367422 GGATGTATCTAGCACTAACTTGATGC 59.633 42.308 0.00 0.00 39.74 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.384056 AGCACCGAATTCATGATCTTAGG 58.616 43.478 6.22 12.99 0.00 2.69
2 3 6.219473 ACTAGCACCGAATTCATGATCTTAG 58.781 40.000 6.22 0.00 0.00 2.18
3 4 6.161855 ACTAGCACCGAATTCATGATCTTA 57.838 37.500 6.22 0.00 0.00 2.10
4 5 5.028549 ACTAGCACCGAATTCATGATCTT 57.971 39.130 6.22 0.00 0.00 2.40
5 6 4.679373 ACTAGCACCGAATTCATGATCT 57.321 40.909 6.22 0.16 0.00 2.75
6 7 5.505286 CAAACTAGCACCGAATTCATGATC 58.495 41.667 6.22 0.00 0.00 2.92
7 8 4.201950 GCAAACTAGCACCGAATTCATGAT 60.202 41.667 6.22 4.55 0.00 2.45
8 9 3.126858 GCAAACTAGCACCGAATTCATGA 59.873 43.478 6.22 0.00 0.00 3.07
9 10 3.127548 AGCAAACTAGCACCGAATTCATG 59.872 43.478 6.22 4.35 36.85 3.07
10 11 3.347216 AGCAAACTAGCACCGAATTCAT 58.653 40.909 6.22 0.00 36.85 2.57
11 12 2.778299 AGCAAACTAGCACCGAATTCA 58.222 42.857 6.22 0.00 36.85 2.57
12 13 4.570772 TCATAGCAAACTAGCACCGAATTC 59.429 41.667 0.00 0.00 36.85 2.17
13 14 4.513442 TCATAGCAAACTAGCACCGAATT 58.487 39.130 0.00 0.00 36.85 2.17
14 15 4.137116 TCATAGCAAACTAGCACCGAAT 57.863 40.909 0.00 0.00 36.85 3.34
15 16 3.603158 TCATAGCAAACTAGCACCGAA 57.397 42.857 0.00 0.00 36.85 4.30
16 17 3.259064 GTTCATAGCAAACTAGCACCGA 58.741 45.455 0.00 0.00 36.85 4.69
17 18 3.000041 TGTTCATAGCAAACTAGCACCG 59.000 45.455 0.00 0.00 36.85 4.94
18 19 4.003648 ACTGTTCATAGCAAACTAGCACC 58.996 43.478 0.00 0.00 36.85 5.01
19 20 5.220491 GCTACTGTTCATAGCAAACTAGCAC 60.220 44.000 0.00 0.00 43.81 4.40
20 21 4.870426 GCTACTGTTCATAGCAAACTAGCA 59.130 41.667 0.00 0.00 43.81 3.49
41 42 8.469309 AGTGGCAAATTATTACTGATTATGCT 57.531 30.769 0.00 0.00 0.00 3.79
76 77 8.158132 GGTTGGGAGGGTTAAATTATTGAAAAA 58.842 33.333 0.00 0.00 0.00 1.94
86 87 3.915346 AACAGGTTGGGAGGGTTAAAT 57.085 42.857 0.00 0.00 0.00 1.40
89 90 3.723154 ACTAAAACAGGTTGGGAGGGTTA 59.277 43.478 0.00 0.00 0.00 2.85
111 113 0.546747 ACTAGTGGGGCCAAGTGCTA 60.547 55.000 4.39 0.00 40.92 3.49
116 118 4.706842 AATATGTACTAGTGGGGCCAAG 57.293 45.455 4.39 0.00 0.00 3.61
159 161 0.107831 TAGTTGCGGCATGGGTATCC 59.892 55.000 2.28 0.00 0.00 2.59
198 200 3.225104 AGCAAGAGAAGATGTTTTGGCA 58.775 40.909 0.00 0.00 0.00 4.92
222 224 4.512571 GCAAATCACCATGGAAAATATGCC 59.487 41.667 21.47 3.42 0.00 4.40
224 226 7.334921 ACTTTGCAAATCACCATGGAAAATATG 59.665 33.333 21.47 10.90 36.61 1.78
232 234 5.138125 ACTAACTTTGCAAATCACCATGG 57.862 39.130 13.23 11.19 0.00 3.66
263 266 3.634448 TCCAGAAAGGAATTTGCAAACGA 59.366 39.130 15.41 0.00 45.65 3.85
329 349 0.321671 TGAAACAGAGGCTCTTCCCG 59.678 55.000 15.90 6.13 34.51 5.14
331 351 2.363683 CCATGAAACAGAGGCTCTTCC 58.636 52.381 15.90 4.85 0.00 3.46
339 359 0.682209 CCTGGGCCCATGAAACAGAG 60.682 60.000 28.82 10.24 0.00 3.35
340 360 1.383799 CCTGGGCCCATGAAACAGA 59.616 57.895 28.82 0.00 0.00 3.41
360 380 4.137543 GGCCAAATGTAGGAATCAGGTAG 58.862 47.826 0.00 0.00 0.00 3.18
372 4153 2.364632 CTCGATGTTGGGCCAAATGTA 58.635 47.619 22.82 8.37 0.00 2.29
390 4171 3.503363 GTGGCATGTCGCTGGCTC 61.503 66.667 2.97 1.42 41.93 4.70
394 4175 3.434319 GGTGGTGGCATGTCGCTG 61.434 66.667 11.21 0.00 41.91 5.18
403 4184 1.598130 GTGAGTGAGTGGTGGTGGC 60.598 63.158 0.00 0.00 0.00 5.01
446 4242 1.079266 GGAGCTGTGAGGAGTGCTG 60.079 63.158 0.00 0.00 35.76 4.41
447 4243 2.289532 GGGAGCTGTGAGGAGTGCT 61.290 63.158 0.00 0.00 38.59 4.40
448 4244 2.267324 GGGAGCTGTGAGGAGTGC 59.733 66.667 0.00 0.00 0.00 4.40
528 4326 3.589881 GCCCTGGATCACATGCGC 61.590 66.667 0.00 0.00 0.00 6.09
840 4641 2.438614 TCGGCGAGAGTGAGAGGG 60.439 66.667 4.99 0.00 0.00 4.30
1492 5293 3.376546 GGAGCAGAACCAATCTTGATCAC 59.623 47.826 0.00 0.00 35.73 3.06
1506 5307 1.070134 ACACGCAGTTTAGGAGCAGAA 59.930 47.619 0.00 0.00 41.61 3.02
1901 6315 5.862845 ACTCTATGATCAGGCCAGTAATTG 58.137 41.667 5.01 0.00 0.00 2.32
1982 6486 1.876156 CCTCTTGCCAGAACTTGACAC 59.124 52.381 0.00 0.00 0.00 3.67
2141 6645 1.473434 CCGGGGAGAAACACTCTATGC 60.473 57.143 0.00 0.00 44.37 3.14
2417 6926 1.824230 TGCTGCCACAACAAAAAGTCT 59.176 42.857 0.00 0.00 0.00 3.24
2424 6933 1.689984 TTCAGATGCTGCCACAACAA 58.310 45.000 0.00 0.00 0.00 2.83
2438 6947 4.102524 TGCCAGAGAAGTAGGTTTTTCAGA 59.897 41.667 0.00 0.00 0.00 3.27
2515 7025 9.784531 ATCCAGACACATAATAGGACTTAATTG 57.215 33.333 0.00 0.00 0.00 2.32
2528 7038 5.585844 CACAACATAGCATCCAGACACATAA 59.414 40.000 0.00 0.00 0.00 1.90
2535 7046 1.561076 AGCCACAACATAGCATCCAGA 59.439 47.619 0.00 0.00 0.00 3.86
2559 7070 7.088905 ACAGGTCATCTAGTAACTAACAAACG 58.911 38.462 0.00 0.00 0.00 3.60
2567 7078 2.355132 CGCGACAGGTCATCTAGTAACT 59.645 50.000 0.00 0.00 0.00 2.24
2572 7083 1.299468 GGCGCGACAGGTCATCTAG 60.299 63.158 12.10 0.00 0.00 2.43
2573 7084 1.391933 ATGGCGCGACAGGTCATCTA 61.392 55.000 23.88 0.00 0.00 1.98
2574 7085 2.244117 AATGGCGCGACAGGTCATCT 62.244 55.000 23.88 0.00 0.00 2.90
2575 7086 1.369091 AAATGGCGCGACAGGTCATC 61.369 55.000 23.88 0.00 0.00 2.92
2576 7087 1.377202 AAATGGCGCGACAGGTCAT 60.377 52.632 23.88 0.00 0.00 3.06
2577 7088 2.031919 AAATGGCGCGACAGGTCA 59.968 55.556 23.88 0.00 0.00 4.02
2578 7089 2.480555 CAAATGGCGCGACAGGTC 59.519 61.111 23.88 0.00 0.00 3.85
2579 7090 3.055719 CCAAATGGCGCGACAGGT 61.056 61.111 23.88 8.23 0.00 4.00
2589 7100 4.520846 GTCTCGCGCGCCAAATGG 62.521 66.667 27.95 10.66 38.53 3.16
2590 7101 2.778551 TTTGTCTCGCGCGCCAAATG 62.779 55.000 27.95 11.50 0.00 2.32
2591 7102 1.922135 ATTTGTCTCGCGCGCCAAAT 61.922 50.000 30.88 30.88 33.81 2.32
2592 7103 2.123988 AATTTGTCTCGCGCGCCAAA 62.124 50.000 29.81 29.81 0.00 3.28
2593 7104 2.123988 AAATTTGTCTCGCGCGCCAA 62.124 50.000 27.95 23.15 0.00 4.52
2594 7105 2.612567 AAATTTGTCTCGCGCGCCA 61.613 52.632 27.95 18.48 0.00 5.69
2595 7106 2.145905 CAAATTTGTCTCGCGCGCC 61.146 57.895 27.95 15.87 0.00 6.53
2596 7107 0.724453 TTCAAATTTGTCTCGCGCGC 60.724 50.000 27.95 23.91 0.00 6.86
2597 7108 1.241744 CTTCAAATTTGTCTCGCGCG 58.758 50.000 26.76 26.76 0.00 6.86
2598 7109 0.977674 GCTTCAAATTTGTCTCGCGC 59.022 50.000 17.47 0.00 0.00 6.86
2599 7110 2.314561 TGCTTCAAATTTGTCTCGCG 57.685 45.000 17.47 0.00 0.00 5.87
2600 7111 3.888934 TCTTGCTTCAAATTTGTCTCGC 58.111 40.909 17.47 14.79 0.00 5.03
2601 7112 5.514279 AGTTCTTGCTTCAAATTTGTCTCG 58.486 37.500 17.47 6.31 0.00 4.04
2602 7113 8.856490 TTTAGTTCTTGCTTCAAATTTGTCTC 57.144 30.769 17.47 8.34 0.00 3.36
2603 7114 9.305925 CTTTTAGTTCTTGCTTCAAATTTGTCT 57.694 29.630 17.47 6.50 0.00 3.41
2604 7115 9.301153 TCTTTTAGTTCTTGCTTCAAATTTGTC 57.699 29.630 17.47 8.97 0.00 3.18
2605 7116 9.305925 CTCTTTTAGTTCTTGCTTCAAATTTGT 57.694 29.630 17.47 0.00 0.00 2.83
2606 7117 9.520204 TCTCTTTTAGTTCTTGCTTCAAATTTG 57.480 29.630 12.15 12.15 0.00 2.32
2611 7122 9.561069 AGTAATCTCTTTTAGTTCTTGCTTCAA 57.439 29.630 0.00 0.00 0.00 2.69
2612 7123 9.561069 AAGTAATCTCTTTTAGTTCTTGCTTCA 57.439 29.630 0.00 0.00 0.00 3.02
2615 7126 9.343539 ACAAAGTAATCTCTTTTAGTTCTTGCT 57.656 29.630 0.00 0.00 35.77 3.91
2616 7127 9.952188 AACAAAGTAATCTCTTTTAGTTCTTGC 57.048 29.630 0.00 0.00 35.77 4.01
2643 7154 2.172851 ACATCGTCCGCTACCAAAAA 57.827 45.000 0.00 0.00 0.00 1.94
2644 7155 2.172851 AACATCGTCCGCTACCAAAA 57.827 45.000 0.00 0.00 0.00 2.44
2645 7156 3.316071 TTAACATCGTCCGCTACCAAA 57.684 42.857 0.00 0.00 0.00 3.28
2646 7157 3.191669 CATTAACATCGTCCGCTACCAA 58.808 45.455 0.00 0.00 0.00 3.67
2647 7158 2.166870 ACATTAACATCGTCCGCTACCA 59.833 45.455 0.00 0.00 0.00 3.25
2648 7159 2.817901 ACATTAACATCGTCCGCTACC 58.182 47.619 0.00 0.00 0.00 3.18
2649 7160 6.376978 AGTATACATTAACATCGTCCGCTAC 58.623 40.000 5.50 0.00 0.00 3.58
2650 7161 6.564709 AGTATACATTAACATCGTCCGCTA 57.435 37.500 5.50 0.00 0.00 4.26
2651 7162 5.449107 AGTATACATTAACATCGTCCGCT 57.551 39.130 5.50 0.00 0.00 5.52
2652 7163 6.520792 AAAGTATACATTAACATCGTCCGC 57.479 37.500 5.50 0.00 0.00 5.54
2674 7185 4.035091 CAGATCCACGACACTTCACAAAAA 59.965 41.667 0.00 0.00 0.00 1.94
2675 7186 3.559655 CAGATCCACGACACTTCACAAAA 59.440 43.478 0.00 0.00 0.00 2.44
2676 7187 3.130633 CAGATCCACGACACTTCACAAA 58.869 45.455 0.00 0.00 0.00 2.83
2677 7188 2.102420 ACAGATCCACGACACTTCACAA 59.898 45.455 0.00 0.00 0.00 3.33
2678 7189 1.686587 ACAGATCCACGACACTTCACA 59.313 47.619 0.00 0.00 0.00 3.58
2679 7190 2.440539 ACAGATCCACGACACTTCAC 57.559 50.000 0.00 0.00 0.00 3.18
2680 7191 5.907866 TTATACAGATCCACGACACTTCA 57.092 39.130 0.00 0.00 0.00 3.02
2681 7192 7.772332 AAATTATACAGATCCACGACACTTC 57.228 36.000 0.00 0.00 0.00 3.01
2682 7193 8.561738 AAAAATTATACAGATCCACGACACTT 57.438 30.769 0.00 0.00 0.00 3.16
2724 7235 9.853555 TTTGCGTCAATTTTATCAGTTTCATAT 57.146 25.926 0.00 0.00 0.00 1.78
2725 7236 9.684448 TTTTGCGTCAATTTTATCAGTTTCATA 57.316 25.926 0.00 0.00 0.00 2.15
2726 7237 8.586570 TTTTGCGTCAATTTTATCAGTTTCAT 57.413 26.923 0.00 0.00 0.00 2.57
2727 7238 7.993821 TTTTGCGTCAATTTTATCAGTTTCA 57.006 28.000 0.00 0.00 0.00 2.69
2728 7239 8.162245 GGATTTTGCGTCAATTTTATCAGTTTC 58.838 33.333 0.00 0.00 0.00 2.78
2729 7240 7.117667 GGGATTTTGCGTCAATTTTATCAGTTT 59.882 33.333 0.00 0.00 0.00 2.66
2730 7241 6.589907 GGGATTTTGCGTCAATTTTATCAGTT 59.410 34.615 0.00 0.00 0.00 3.16
2731 7242 6.099341 GGGATTTTGCGTCAATTTTATCAGT 58.901 36.000 0.00 0.00 0.00 3.41
2732 7243 6.098679 TGGGATTTTGCGTCAATTTTATCAG 58.901 36.000 0.00 0.00 0.00 2.90
2733 7244 6.030548 TGGGATTTTGCGTCAATTTTATCA 57.969 33.333 0.00 0.00 0.00 2.15
2734 7245 6.589907 AGTTGGGATTTTGCGTCAATTTTATC 59.410 34.615 0.00 0.00 0.00 1.75
2735 7246 6.368516 CAGTTGGGATTTTGCGTCAATTTTAT 59.631 34.615 0.00 0.00 0.00 1.40
2736 7247 5.694006 CAGTTGGGATTTTGCGTCAATTTTA 59.306 36.000 0.00 0.00 0.00 1.52
2737 7248 4.511082 CAGTTGGGATTTTGCGTCAATTTT 59.489 37.500 0.00 0.00 0.00 1.82
2738 7249 4.057432 CAGTTGGGATTTTGCGTCAATTT 58.943 39.130 0.00 0.00 0.00 1.82
2739 7250 3.320541 TCAGTTGGGATTTTGCGTCAATT 59.679 39.130 0.00 0.00 0.00 2.32
2740 7251 2.890311 TCAGTTGGGATTTTGCGTCAAT 59.110 40.909 0.00 0.00 0.00 2.57
2741 7252 2.302260 TCAGTTGGGATTTTGCGTCAA 58.698 42.857 0.00 0.00 0.00 3.18
2742 7253 1.974265 TCAGTTGGGATTTTGCGTCA 58.026 45.000 0.00 0.00 0.00 4.35
2743 7254 3.049912 GTTTCAGTTGGGATTTTGCGTC 58.950 45.455 0.00 0.00 0.00 5.19
2744 7255 2.542824 CGTTTCAGTTGGGATTTTGCGT 60.543 45.455 0.00 0.00 0.00 5.24
2745 7256 2.050691 CGTTTCAGTTGGGATTTTGCG 58.949 47.619 0.00 0.00 0.00 4.85
2746 7257 3.363341 TCGTTTCAGTTGGGATTTTGC 57.637 42.857 0.00 0.00 0.00 3.68
2747 7258 5.181690 TCTTCGTTTCAGTTGGGATTTTG 57.818 39.130 0.00 0.00 0.00 2.44
2748 7259 5.126384 TGTTCTTCGTTTCAGTTGGGATTTT 59.874 36.000 0.00 0.00 0.00 1.82
2749 7260 4.642885 TGTTCTTCGTTTCAGTTGGGATTT 59.357 37.500 0.00 0.00 0.00 2.17
2750 7261 4.204012 TGTTCTTCGTTTCAGTTGGGATT 58.796 39.130 0.00 0.00 0.00 3.01
2751 7262 3.815809 TGTTCTTCGTTTCAGTTGGGAT 58.184 40.909 0.00 0.00 0.00 3.85
2752 7263 3.269538 TGTTCTTCGTTTCAGTTGGGA 57.730 42.857 0.00 0.00 0.00 4.37
2753 7264 4.364415 TTTGTTCTTCGTTTCAGTTGGG 57.636 40.909 0.00 0.00 0.00 4.12
2754 7265 5.276348 GCATTTTGTTCTTCGTTTCAGTTGG 60.276 40.000 0.00 0.00 0.00 3.77
2755 7266 5.288232 TGCATTTTGTTCTTCGTTTCAGTTG 59.712 36.000 0.00 0.00 0.00 3.16
2756 7267 5.406649 TGCATTTTGTTCTTCGTTTCAGTT 58.593 33.333 0.00 0.00 0.00 3.16
2757 7268 4.992688 TGCATTTTGTTCTTCGTTTCAGT 58.007 34.783 0.00 0.00 0.00 3.41
2758 7269 5.947503 TTGCATTTTGTTCTTCGTTTCAG 57.052 34.783 0.00 0.00 0.00 3.02
2759 7270 6.312426 ACATTTGCATTTTGTTCTTCGTTTCA 59.688 30.769 0.00 0.00 0.00 2.69
2760 7271 6.704819 ACATTTGCATTTTGTTCTTCGTTTC 58.295 32.000 0.00 0.00 0.00 2.78
2761 7272 6.660887 ACATTTGCATTTTGTTCTTCGTTT 57.339 29.167 0.00 0.00 0.00 3.60
2762 7273 6.660887 AACATTTGCATTTTGTTCTTCGTT 57.339 29.167 4.19 0.00 0.00 3.85
2763 7274 6.312426 TCAAACATTTGCATTTTGTTCTTCGT 59.688 30.769 9.13 0.00 38.05 3.85
2764 7275 6.703857 TCAAACATTTGCATTTTGTTCTTCG 58.296 32.000 9.13 1.83 38.05 3.79
2765 7276 7.687445 ACTCAAACATTTGCATTTTGTTCTTC 58.313 30.769 9.13 0.00 38.05 2.87
2766 7277 7.614124 ACTCAAACATTTGCATTTTGTTCTT 57.386 28.000 9.13 0.00 38.05 2.52
2767 7278 7.614124 AACTCAAACATTTGCATTTTGTTCT 57.386 28.000 9.13 0.45 38.05 3.01
2768 7279 8.095287 CAAACTCAAACATTTGCATTTTGTTC 57.905 30.769 9.13 0.00 38.05 3.18
2778 7289 9.033481 TCTTCTAATTGCAAACTCAAACATTTG 57.967 29.630 1.71 0.00 38.57 2.32
2779 7290 9.768662 ATCTTCTAATTGCAAACTCAAACATTT 57.231 25.926 1.71 0.00 0.00 2.32
2780 7291 9.768662 AATCTTCTAATTGCAAACTCAAACATT 57.231 25.926 1.71 0.00 0.00 2.71
2781 7292 9.415544 GAATCTTCTAATTGCAAACTCAAACAT 57.584 29.630 1.71 0.00 0.00 2.71
2782 7293 8.412456 TGAATCTTCTAATTGCAAACTCAAACA 58.588 29.630 1.71 0.00 0.00 2.83
2783 7294 8.801715 TGAATCTTCTAATTGCAAACTCAAAC 57.198 30.769 1.71 0.00 0.00 2.93
2784 7295 9.467258 CTTGAATCTTCTAATTGCAAACTCAAA 57.533 29.630 1.71 0.00 0.00 2.69
2785 7296 8.632679 ACTTGAATCTTCTAATTGCAAACTCAA 58.367 29.630 1.71 0.00 0.00 3.02
2786 7297 8.169977 ACTTGAATCTTCTAATTGCAAACTCA 57.830 30.769 1.71 0.00 0.00 3.41
2787 7298 9.766277 CTACTTGAATCTTCTAATTGCAAACTC 57.234 33.333 1.71 0.00 0.00 3.01
2788 7299 8.239998 GCTACTTGAATCTTCTAATTGCAAACT 58.760 33.333 1.71 0.00 0.00 2.66
2789 7300 8.239998 AGCTACTTGAATCTTCTAATTGCAAAC 58.760 33.333 1.71 0.00 0.00 2.93
2790 7301 8.340618 AGCTACTTGAATCTTCTAATTGCAAA 57.659 30.769 1.71 0.00 0.00 3.68
2791 7302 7.928307 AGCTACTTGAATCTTCTAATTGCAA 57.072 32.000 0.00 0.00 0.00 4.08
2798 7309 9.227777 TGCGTATATAGCTACTTGAATCTTCTA 57.772 33.333 0.00 0.00 35.28 2.10
2799 7310 8.112016 TGCGTATATAGCTACTTGAATCTTCT 57.888 34.615 0.00 0.00 35.28 2.85
2800 7311 7.486551 CCTGCGTATATAGCTACTTGAATCTTC 59.513 40.741 0.00 0.00 35.28 2.87
2801 7312 7.039644 ACCTGCGTATATAGCTACTTGAATCTT 60.040 37.037 0.00 0.00 35.28 2.40
2802 7313 6.434652 ACCTGCGTATATAGCTACTTGAATCT 59.565 38.462 0.00 0.00 35.28 2.40
2803 7314 6.528423 CACCTGCGTATATAGCTACTTGAATC 59.472 42.308 0.00 0.00 35.28 2.52
2804 7315 6.390721 CACCTGCGTATATAGCTACTTGAAT 58.609 40.000 0.00 0.00 35.28 2.57
2805 7316 5.278808 CCACCTGCGTATATAGCTACTTGAA 60.279 44.000 0.00 0.00 35.28 2.69
2806 7317 4.217767 CCACCTGCGTATATAGCTACTTGA 59.782 45.833 0.00 0.00 35.28 3.02
2807 7318 4.486090 CCACCTGCGTATATAGCTACTTG 58.514 47.826 0.00 0.00 35.28 3.16
2808 7319 3.056749 GCCACCTGCGTATATAGCTACTT 60.057 47.826 0.00 0.00 35.28 2.24
2809 7320 2.492484 GCCACCTGCGTATATAGCTACT 59.508 50.000 0.00 0.00 35.28 2.57
2810 7321 2.230508 TGCCACCTGCGTATATAGCTAC 59.769 50.000 0.00 0.00 45.60 3.58
2811 7322 2.230508 GTGCCACCTGCGTATATAGCTA 59.769 50.000 0.00 0.00 45.60 3.32
2812 7323 1.000955 GTGCCACCTGCGTATATAGCT 59.999 52.381 0.00 0.00 45.60 3.32
2813 7324 1.270094 TGTGCCACCTGCGTATATAGC 60.270 52.381 0.00 0.00 45.60 2.97
2814 7325 2.812358 TGTGCCACCTGCGTATATAG 57.188 50.000 0.00 0.00 45.60 1.31
2815 7326 3.762407 ATTGTGCCACCTGCGTATATA 57.238 42.857 0.00 0.00 45.60 0.86
2816 7327 2.638480 ATTGTGCCACCTGCGTATAT 57.362 45.000 0.00 0.00 45.60 0.86
2817 7328 3.545366 TTATTGTGCCACCTGCGTATA 57.455 42.857 0.00 0.00 45.60 1.47
2818 7329 2.411628 TTATTGTGCCACCTGCGTAT 57.588 45.000 0.00 0.00 45.60 3.06
2819 7330 2.186532 TTTATTGTGCCACCTGCGTA 57.813 45.000 0.00 0.00 45.60 4.42
2820 7331 1.323412 TTTTATTGTGCCACCTGCGT 58.677 45.000 0.00 0.00 45.60 5.24
2821 7332 2.261345 CATTTTATTGTGCCACCTGCG 58.739 47.619 0.00 0.00 45.60 5.18
2822 7333 2.001872 GCATTTTATTGTGCCACCTGC 58.998 47.619 0.00 0.00 41.77 4.85
2823 7334 2.995258 GTGCATTTTATTGTGCCACCTG 59.005 45.455 0.00 0.00 40.56 4.00
2824 7335 2.899256 AGTGCATTTTATTGTGCCACCT 59.101 40.909 0.00 0.00 40.56 4.00
2825 7336 3.317603 AGTGCATTTTATTGTGCCACC 57.682 42.857 0.00 0.00 40.56 4.61
2826 7337 6.089417 GTCTTTAGTGCATTTTATTGTGCCAC 59.911 38.462 0.00 0.00 40.56 5.01
2827 7338 6.155827 GTCTTTAGTGCATTTTATTGTGCCA 58.844 36.000 0.00 0.00 40.56 4.92
2828 7339 6.155827 TGTCTTTAGTGCATTTTATTGTGCC 58.844 36.000 0.00 0.00 40.56 5.01
2829 7340 7.541783 TCATGTCTTTAGTGCATTTTATTGTGC 59.458 33.333 0.00 0.00 41.61 4.57
2830 7341 8.969121 TCATGTCTTTAGTGCATTTTATTGTG 57.031 30.769 0.00 0.00 0.00 3.33
2840 7351 9.645059 GCTCTATATTATCATGTCTTTAGTGCA 57.355 33.333 0.00 0.00 0.00 4.57
2841 7352 9.645059 TGCTCTATATTATCATGTCTTTAGTGC 57.355 33.333 0.00 2.35 0.00 4.40
2848 7359 9.650539 GACACAATGCTCTATATTATCATGTCT 57.349 33.333 0.00 0.00 0.00 3.41
2849 7360 8.877779 GGACACAATGCTCTATATTATCATGTC 58.122 37.037 0.00 0.00 0.00 3.06
2850 7361 8.377799 TGGACACAATGCTCTATATTATCATGT 58.622 33.333 0.00 0.00 0.00 3.21
2851 7362 8.782339 TGGACACAATGCTCTATATTATCATG 57.218 34.615 0.00 0.00 0.00 3.07
2852 7363 8.045507 CCTGGACACAATGCTCTATATTATCAT 58.954 37.037 0.00 0.00 0.00 2.45
2853 7364 7.235399 TCCTGGACACAATGCTCTATATTATCA 59.765 37.037 0.00 0.00 0.00 2.15
2854 7365 7.615403 TCCTGGACACAATGCTCTATATTATC 58.385 38.462 0.00 0.00 0.00 1.75
2855 7366 7.559335 TCCTGGACACAATGCTCTATATTAT 57.441 36.000 0.00 0.00 0.00 1.28
2856 7367 6.519043 GCTCCTGGACACAATGCTCTATATTA 60.519 42.308 0.00 0.00 0.00 0.98
2857 7368 5.744300 GCTCCTGGACACAATGCTCTATATT 60.744 44.000 0.00 0.00 0.00 1.28
2858 7369 4.262808 GCTCCTGGACACAATGCTCTATAT 60.263 45.833 0.00 0.00 0.00 0.86
2859 7370 3.070159 GCTCCTGGACACAATGCTCTATA 59.930 47.826 0.00 0.00 0.00 1.31
2860 7371 2.158842 GCTCCTGGACACAATGCTCTAT 60.159 50.000 0.00 0.00 0.00 1.98
2861 7372 1.208052 GCTCCTGGACACAATGCTCTA 59.792 52.381 0.00 0.00 0.00 2.43
2862 7373 0.035630 GCTCCTGGACACAATGCTCT 60.036 55.000 0.00 0.00 0.00 4.09
2863 7374 0.321919 TGCTCCTGGACACAATGCTC 60.322 55.000 0.00 0.00 0.00 4.26
2864 7375 0.607489 GTGCTCCTGGACACAATGCT 60.607 55.000 18.41 0.00 36.77 3.79
2865 7376 0.607489 AGTGCTCCTGGACACAATGC 60.607 55.000 22.55 12.39 39.30 3.56
2866 7377 1.808945 GAAGTGCTCCTGGACACAATG 59.191 52.381 22.55 3.74 39.30 2.82
2867 7378 1.701847 AGAAGTGCTCCTGGACACAAT 59.298 47.619 22.55 14.87 39.30 2.71
2868 7379 1.131638 AGAAGTGCTCCTGGACACAA 58.868 50.000 22.55 0.00 39.30 3.33
2869 7380 1.131638 AAGAAGTGCTCCTGGACACA 58.868 50.000 22.55 10.29 39.30 3.72
2870 7381 2.300437 ACTAAGAAGTGCTCCTGGACAC 59.700 50.000 16.64 16.64 36.96 3.67
2871 7382 2.300152 CACTAAGAAGTGCTCCTGGACA 59.700 50.000 0.00 0.00 46.28 4.02
2872 7383 2.966050 CACTAAGAAGTGCTCCTGGAC 58.034 52.381 0.00 0.00 46.28 4.02
2882 7393 5.700402 ATTGGCCACTATCACTAAGAAGT 57.300 39.130 3.88 0.00 35.91 3.01
2883 7394 7.047891 TGTAATTGGCCACTATCACTAAGAAG 58.952 38.462 3.88 0.00 0.00 2.85
2884 7395 6.953101 TGTAATTGGCCACTATCACTAAGAA 58.047 36.000 3.88 0.00 0.00 2.52
2885 7396 6.553953 TGTAATTGGCCACTATCACTAAGA 57.446 37.500 3.88 0.00 0.00 2.10
2886 7397 6.992123 TGATGTAATTGGCCACTATCACTAAG 59.008 38.462 3.88 0.00 0.00 2.18
2887 7398 6.894682 TGATGTAATTGGCCACTATCACTAA 58.105 36.000 3.88 0.00 0.00 2.24
2888 7399 6.493189 TGATGTAATTGGCCACTATCACTA 57.507 37.500 3.88 0.00 0.00 2.74
2889 7400 5.372343 TGATGTAATTGGCCACTATCACT 57.628 39.130 3.88 0.00 0.00 3.41
2890 7401 6.149474 GGTATGATGTAATTGGCCACTATCAC 59.851 42.308 3.88 0.00 0.00 3.06
2891 7402 6.044287 AGGTATGATGTAATTGGCCACTATCA 59.956 38.462 3.88 11.72 0.00 2.15
2892 7403 6.476378 AGGTATGATGTAATTGGCCACTATC 58.524 40.000 3.88 5.94 0.00 2.08
2893 7404 6.454223 AGGTATGATGTAATTGGCCACTAT 57.546 37.500 3.88 0.00 0.00 2.12
2894 7405 5.221843 GGAGGTATGATGTAATTGGCCACTA 60.222 44.000 3.88 0.00 0.00 2.74
2895 7406 4.446311 GGAGGTATGATGTAATTGGCCACT 60.446 45.833 3.88 0.00 0.00 4.00
2896 7407 3.821033 GGAGGTATGATGTAATTGGCCAC 59.179 47.826 3.88 0.00 0.00 5.01
2897 7408 3.495983 CGGAGGTATGATGTAATTGGCCA 60.496 47.826 0.00 0.00 0.00 5.36
2898 7409 3.074412 CGGAGGTATGATGTAATTGGCC 58.926 50.000 0.00 0.00 0.00 5.36
2899 7410 3.740115 ACGGAGGTATGATGTAATTGGC 58.260 45.455 0.00 0.00 0.00 4.52
2900 7411 4.315803 GGACGGAGGTATGATGTAATTGG 58.684 47.826 0.00 0.00 0.00 3.16
2901 7412 3.987868 CGGACGGAGGTATGATGTAATTG 59.012 47.826 0.00 0.00 0.00 2.32
2902 7413 3.893200 TCGGACGGAGGTATGATGTAATT 59.107 43.478 0.00 0.00 0.00 1.40
2903 7414 3.493334 TCGGACGGAGGTATGATGTAAT 58.507 45.455 0.00 0.00 0.00 1.89
2904 7415 2.934887 TCGGACGGAGGTATGATGTAA 58.065 47.619 0.00 0.00 0.00 2.41
2905 7416 2.643995 TCGGACGGAGGTATGATGTA 57.356 50.000 0.00 0.00 0.00 2.29
2906 7417 1.771565 TTCGGACGGAGGTATGATGT 58.228 50.000 0.00 0.00 0.00 3.06
2907 7418 2.882927 TTTCGGACGGAGGTATGATG 57.117 50.000 0.00 0.00 0.00 3.07
2908 7419 3.197116 ACTTTTTCGGACGGAGGTATGAT 59.803 43.478 0.00 0.00 0.00 2.45
2909 7420 2.564062 ACTTTTTCGGACGGAGGTATGA 59.436 45.455 0.00 0.00 0.00 2.15
2910 7421 2.968675 ACTTTTTCGGACGGAGGTATG 58.031 47.619 0.00 0.00 0.00 2.39
2911 7422 3.690475 AACTTTTTCGGACGGAGGTAT 57.310 42.857 0.00 0.00 0.00 2.73
2912 7423 3.132925 CAAACTTTTTCGGACGGAGGTA 58.867 45.455 0.00 0.00 0.00 3.08
2913 7424 1.944709 CAAACTTTTTCGGACGGAGGT 59.055 47.619 0.00 0.00 0.00 3.85
2914 7425 1.944709 ACAAACTTTTTCGGACGGAGG 59.055 47.619 0.00 0.00 0.00 4.30
2915 7426 2.853281 GCACAAACTTTTTCGGACGGAG 60.853 50.000 0.00 0.00 0.00 4.63
2916 7427 1.064357 GCACAAACTTTTTCGGACGGA 59.936 47.619 0.00 0.00 0.00 4.69
2917 7428 1.472990 GCACAAACTTTTTCGGACGG 58.527 50.000 0.00 0.00 0.00 4.79
2918 7429 1.202200 TGGCACAAACTTTTTCGGACG 60.202 47.619 0.00 0.00 31.92 4.79
2919 7430 2.570442 TGGCACAAACTTTTTCGGAC 57.430 45.000 0.00 0.00 31.92 4.79
2929 7440 6.701694 TTGAGGAACAAGCTTGGCACAAAC 62.702 45.833 29.18 14.35 37.48 2.93
2930 7441 4.690601 TTGAGGAACAAGCTTGGCACAAA 61.691 43.478 29.18 13.65 37.48 2.83
2931 7442 3.210255 TTGAGGAACAAGCTTGGCACAA 61.210 45.455 29.18 22.69 37.48 3.33
2932 7443 0.106769 TGAGGAACAAGCTTGGCACA 60.107 50.000 29.18 19.21 0.00 4.57
2933 7444 1.032014 TTGAGGAACAAGCTTGGCAC 58.968 50.000 29.18 17.88 34.20 5.01
2934 7445 1.774110 TTTGAGGAACAAGCTTGGCA 58.226 45.000 29.18 15.73 39.77 4.92
2935 7446 2.611224 CCATTTGAGGAACAAGCTTGGC 60.611 50.000 29.18 19.94 39.77 4.52
2936 7447 2.892852 TCCATTTGAGGAACAAGCTTGG 59.107 45.455 29.18 12.28 39.77 3.61
2937 7448 4.021719 ACATCCATTTGAGGAACAAGCTTG 60.022 41.667 24.84 24.84 41.92 4.01
2938 7449 4.154942 ACATCCATTTGAGGAACAAGCTT 58.845 39.130 0.00 0.00 41.92 3.74
2939 7450 3.771216 ACATCCATTTGAGGAACAAGCT 58.229 40.909 0.00 0.00 41.92 3.74
2940 7451 5.591877 AGATACATCCATTTGAGGAACAAGC 59.408 40.000 0.00 0.00 41.92 4.01
2941 7452 7.041508 GCTAGATACATCCATTTGAGGAACAAG 60.042 40.741 0.00 0.00 41.92 3.16
2942 7453 6.767902 GCTAGATACATCCATTTGAGGAACAA 59.232 38.462 0.00 0.00 41.92 2.83
2943 7454 6.126796 TGCTAGATACATCCATTTGAGGAACA 60.127 38.462 0.00 0.00 41.92 3.18
2944 7455 6.203723 GTGCTAGATACATCCATTTGAGGAAC 59.796 42.308 0.00 0.00 41.92 3.62
2945 7456 6.100279 AGTGCTAGATACATCCATTTGAGGAA 59.900 38.462 0.00 0.00 41.92 3.36
2946 7457 5.604231 AGTGCTAGATACATCCATTTGAGGA 59.396 40.000 0.00 0.00 43.01 3.71
2947 7458 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
2948 7459 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
2949 7460 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
2950 7461 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
2951 7462 8.486210 TCAAGTTAGTGCTAGATACATCCATTT 58.514 33.333 0.00 0.00 0.00 2.32
2952 7463 8.023021 TCAAGTTAGTGCTAGATACATCCATT 57.977 34.615 0.00 0.00 0.00 3.16
2953 7464 7.603180 TCAAGTTAGTGCTAGATACATCCAT 57.397 36.000 0.00 0.00 0.00 3.41
2954 7465 7.436933 CATCAAGTTAGTGCTAGATACATCCA 58.563 38.462 0.00 0.00 0.00 3.41
2955 7466 6.367422 GCATCAAGTTAGTGCTAGATACATCC 59.633 42.308 0.00 0.00 36.02 3.51
2956 7467 7.151308 AGCATCAAGTTAGTGCTAGATACATC 58.849 38.462 11.30 0.00 46.54 3.06
2957 7468 7.060383 AGCATCAAGTTAGTGCTAGATACAT 57.940 36.000 11.30 0.00 46.54 2.29
2958 7469 6.471233 AGCATCAAGTTAGTGCTAGATACA 57.529 37.500 11.30 0.00 46.54 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.