Multiple sequence alignment - TraesCS3D01G452300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G452300 chr3D 100.000 5469 0 0 1 5469 560059115 560053647 0.000000e+00 10100.0
1 TraesCS3D01G452300 chr3D 96.146 467 18 0 1 467 605262201 605262667 0.000000e+00 763.0
2 TraesCS3D01G452300 chr3D 94.643 168 8 1 393 559 564126832 564126665 5.430000e-65 259.0
3 TraesCS3D01G452300 chr3D 85.714 196 25 1 5275 5467 560072050 560071855 2.580000e-48 204.0
4 TraesCS3D01G452300 chr3D 89.320 103 7 4 4861 4962 560073050 560072951 5.750000e-25 126.0
5 TraesCS3D01G452300 chr3D 91.045 67 6 0 5211 5277 560072694 560072628 2.100000e-14 91.6
6 TraesCS3D01G452300 chr1B 94.297 3770 186 14 745 4505 4114282 4118031 0.000000e+00 5744.0
7 TraesCS3D01G452300 chr1B 86.173 3920 482 38 1027 4901 4095601 4099505 0.000000e+00 4181.0
8 TraesCS3D01G452300 chr1B 86.301 3701 469 25 839 4523 4483828 4480150 0.000000e+00 3991.0
9 TraesCS3D01G452300 chr1B 86.150 3704 464 27 1002 4670 4510838 4507149 0.000000e+00 3952.0
10 TraesCS3D01G452300 chr1B 85.787 3757 469 47 1040 4760 3964593 3968320 0.000000e+00 3919.0
11 TraesCS3D01G452300 chr1B 85.851 3654 469 28 833 4470 4591797 4588176 0.000000e+00 3840.0
12 TraesCS3D01G452300 chr1B 88.519 3031 339 7 1027 4051 4150796 4153823 0.000000e+00 3661.0
13 TraesCS3D01G452300 chr1B 84.109 3373 458 34 1544 4870 4824040 4820700 0.000000e+00 3188.0
14 TraesCS3D01G452300 chr1B 87.756 1756 179 18 3174 4901 4530466 4528719 0.000000e+00 2019.0
15 TraesCS3D01G452300 chr1B 89.371 1430 137 10 4049 5468 4153904 4155328 0.000000e+00 1784.0
16 TraesCS3D01G452300 chr1B 85.438 1552 191 23 3424 4964 3996855 3998382 0.000000e+00 1581.0
17 TraesCS3D01G452300 chr1B 86.138 1248 120 19 3679 4901 4842014 4840795 0.000000e+00 1297.0
18 TraesCS3D01G452300 chr1B 83.232 1312 200 18 870 2171 687785367 687786668 0.000000e+00 1186.0
19 TraesCS3D01G452300 chr1B 94.336 565 30 2 1 564 331132991 331132428 0.000000e+00 865.0
20 TraesCS3D01G452300 chr1B 81.225 751 88 20 4145 4870 4862468 4861746 1.720000e-154 556.0
21 TraesCS3D01G452300 chr1B 94.375 160 3 1 558 717 4114133 4114286 1.970000e-59 241.0
22 TraesCS3D01G452300 chr1D 87.525 3519 407 25 1027 4529 621117 617615 0.000000e+00 4037.0
23 TraesCS3D01G452300 chr1D 86.903 2787 324 18 2150 4901 460320 463100 0.000000e+00 3086.0
24 TraesCS3D01G452300 chr1D 95.717 467 20 0 1 467 322388230 322387764 0.000000e+00 752.0
25 TraesCS3D01G452300 chr1D 85.507 276 28 10 4698 4966 395799 396069 1.500000e-70 278.0
26 TraesCS3D01G452300 chr1A 86.743 3485 423 28 1001 4470 3491814 3488354 0.000000e+00 3840.0
27 TraesCS3D01G452300 chr1A 86.550 3487 431 32 1027 4492 3503843 3500374 0.000000e+00 3807.0
28 TraesCS3D01G452300 chr1A 78.247 308 27 15 558 849 27210417 27210700 1.580000e-35 161.0
29 TraesCS3D01G452300 chr7D 95.931 467 19 0 1 467 629456783 629456317 0.000000e+00 758.0
30 TraesCS3D01G452300 chr7D 95.914 465 19 0 3 467 459932108 459931644 0.000000e+00 754.0
31 TraesCS3D01G452300 chr7D 94.643 168 7 2 393 559 329105836 329105670 5.430000e-65 259.0
32 TraesCS3D01G452300 chr5D 95.931 467 19 0 1 467 67956263 67955797 0.000000e+00 758.0
33 TraesCS3D01G452300 chr2D 95.717 467 20 0 1 467 547690884 547691350 0.000000e+00 752.0
34 TraesCS3D01G452300 chr3B 95.000 480 21 3 1 478 163696719 163696241 0.000000e+00 750.0
35 TraesCS3D01G452300 chr2B 90.569 562 48 5 1 559 789787653 789787094 0.000000e+00 739.0
36 TraesCS3D01G452300 chr3A 94.706 170 8 1 390 558 359337082 359337251 4.200000e-66 263.0
37 TraesCS3D01G452300 chr7A 93.296 179 9 3 401 577 726479934 726479757 1.510000e-65 261.0
38 TraesCS3D01G452300 chr4D 94.675 169 7 2 393 559 477095746 477095578 1.510000e-65 261.0
39 TraesCS3D01G452300 chr6B 94.152 171 9 1 390 559 225541160 225541330 5.430000e-65 259.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G452300 chr3D 560053647 560059115 5468 True 10100.0 10100 100.000 1 5469 1 chr3D.!!$R1 5468
1 TraesCS3D01G452300 chr1B 4095601 4099505 3904 False 4181.0 4181 86.173 1027 4901 1 chr1B.!!$F3 3874
2 TraesCS3D01G452300 chr1B 4480150 4483828 3678 True 3991.0 3991 86.301 839 4523 1 chr1B.!!$R1 3684
3 TraesCS3D01G452300 chr1B 4507149 4510838 3689 True 3952.0 3952 86.150 1002 4670 1 chr1B.!!$R2 3668
4 TraesCS3D01G452300 chr1B 3964593 3968320 3727 False 3919.0 3919 85.787 1040 4760 1 chr1B.!!$F1 3720
5 TraesCS3D01G452300 chr1B 4588176 4591797 3621 True 3840.0 3840 85.851 833 4470 1 chr1B.!!$R4 3637
6 TraesCS3D01G452300 chr1B 4820700 4824040 3340 True 3188.0 3188 84.109 1544 4870 1 chr1B.!!$R5 3326
7 TraesCS3D01G452300 chr1B 4114133 4118031 3898 False 2992.5 5744 94.336 558 4505 2 chr1B.!!$F5 3947
8 TraesCS3D01G452300 chr1B 4150796 4155328 4532 False 2722.5 3661 88.945 1027 5468 2 chr1B.!!$F6 4441
9 TraesCS3D01G452300 chr1B 4528719 4530466 1747 True 2019.0 2019 87.756 3174 4901 1 chr1B.!!$R3 1727
10 TraesCS3D01G452300 chr1B 3996855 3998382 1527 False 1581.0 1581 85.438 3424 4964 1 chr1B.!!$F2 1540
11 TraesCS3D01G452300 chr1B 4840795 4842014 1219 True 1297.0 1297 86.138 3679 4901 1 chr1B.!!$R6 1222
12 TraesCS3D01G452300 chr1B 687785367 687786668 1301 False 1186.0 1186 83.232 870 2171 1 chr1B.!!$F4 1301
13 TraesCS3D01G452300 chr1B 331132428 331132991 563 True 865.0 865 94.336 1 564 1 chr1B.!!$R8 563
14 TraesCS3D01G452300 chr1B 4861746 4862468 722 True 556.0 556 81.225 4145 4870 1 chr1B.!!$R7 725
15 TraesCS3D01G452300 chr1D 617615 621117 3502 True 4037.0 4037 87.525 1027 4529 1 chr1D.!!$R1 3502
16 TraesCS3D01G452300 chr1D 460320 463100 2780 False 3086.0 3086 86.903 2150 4901 1 chr1D.!!$F2 2751
17 TraesCS3D01G452300 chr1A 3488354 3491814 3460 True 3840.0 3840 86.743 1001 4470 1 chr1A.!!$R1 3469
18 TraesCS3D01G452300 chr1A 3500374 3503843 3469 True 3807.0 3807 86.550 1027 4492 1 chr1A.!!$R2 3465
19 TraesCS3D01G452300 chr2B 789787094 789787653 559 True 739.0 739 90.569 1 559 1 chr2B.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.108138 CTTCCCCACCTTACAGCTCG 60.108 60.000 0.00 0.0 0.00 5.03 F
633 634 0.115745 AAGTTGTAGACGGAGGGGGA 59.884 55.000 0.00 0.0 0.00 4.81 F
745 746 0.185901 AAAGGGAAACAGGCTGCTCA 59.814 50.000 15.89 0.0 0.00 4.26 F
746 747 0.251077 AAGGGAAACAGGCTGCTCAG 60.251 55.000 15.89 0.0 0.00 3.35 F
841 842 1.028868 GTCATCCACAGCAGCTTCCC 61.029 60.000 0.00 0.0 0.00 3.97 F
2113 2130 1.419012 CTGGCTCTATTCCTGGCATCA 59.581 52.381 0.00 0.0 35.77 3.07 F
2643 2661 1.651987 CATGTACCCAGCTAACGGTG 58.348 55.000 9.09 0.0 38.35 4.94 F
3121 3358 1.530183 GGCAGCATTCCATCCTCCC 60.530 63.158 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1531 1548 1.270625 TGTGAGGTTGCCTAAAGACGG 60.271 52.381 0.00 0.00 31.76 4.79 R
1885 1902 1.282382 GTGCCTAGTTCTGGGGGTAA 58.718 55.000 4.49 0.00 0.00 2.85 R
2272 2290 3.012518 AGATTGACAGTAGTTGCATGCC 58.987 45.455 16.68 0.00 0.00 4.40 R
2702 2724 5.322754 TGAGTGTTAGCTCTACTAGGTTGT 58.677 41.667 0.00 0.00 37.13 3.32 R
2746 2769 4.785376 ACTGTAGATTTCTGGTGGAATCCT 59.215 41.667 0.00 0.00 33.53 3.24 R
3121 3358 0.601558 AGGCTCAACATGCTTGCAAG 59.398 50.000 22.44 22.44 0.00 4.01 R
4353 4723 0.107703 CCTCATCGTTGGCCTTGCTA 60.108 55.000 3.32 0.00 0.00 3.49 R
4660 5060 0.038251 TGAGGCGACTGTAACAGCAG 60.038 55.000 0.00 0.00 44.43 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.829003 CTCACCTCGGCCGAGCTA 60.829 66.667 43.11 29.41 40.69 3.32
53 54 3.127352 CTCACCTCGGCCGAGCTAC 62.127 68.421 43.11 0.00 40.69 3.58
54 55 3.141488 CACCTCGGCCGAGCTACT 61.141 66.667 43.11 24.53 40.69 2.57
55 56 2.829458 ACCTCGGCCGAGCTACTC 60.829 66.667 43.11 0.00 40.69 2.59
81 82 2.912025 CCGCCAAGGGTTGTGCTT 60.912 61.111 0.00 0.00 35.97 3.91
82 83 2.644992 CGCCAAGGGTTGTGCTTC 59.355 61.111 0.00 0.00 0.00 3.86
83 84 2.192861 CGCCAAGGGTTGTGCTTCA 61.193 57.895 0.00 0.00 0.00 3.02
84 85 1.733402 CGCCAAGGGTTGTGCTTCAA 61.733 55.000 0.00 0.00 0.00 2.69
92 93 1.641140 TTGTGCTTCAACTGCGACG 59.359 52.632 0.00 0.00 0.00 5.12
93 94 0.808060 TTGTGCTTCAACTGCGACGA 60.808 50.000 0.00 0.00 0.00 4.20
94 95 1.215014 TGTGCTTCAACTGCGACGAG 61.215 55.000 0.00 0.00 0.00 4.18
105 106 4.849329 CGACGAGCCCTACACGCC 62.849 72.222 0.00 0.00 35.59 5.68
106 107 4.509737 GACGAGCCCTACACGCCC 62.510 72.222 0.00 0.00 35.59 6.13
109 110 4.509737 GAGCCCTACACGCCCGAC 62.510 72.222 0.00 0.00 0.00 4.79
112 113 4.446413 CCCTACACGCCCGACCAC 62.446 72.222 0.00 0.00 0.00 4.16
113 114 4.789075 CCTACACGCCCGACCACG 62.789 72.222 0.00 0.00 39.43 4.94
114 115 4.047059 CTACACGCCCGACCACGT 62.047 66.667 0.00 0.00 44.75 4.49
115 116 3.958822 CTACACGCCCGACCACGTC 62.959 68.421 0.00 0.00 41.32 4.34
130 131 4.500116 GTCTGCCCGCGACTCCTC 62.500 72.222 8.23 0.00 0.00 3.71
131 132 4.742649 TCTGCCCGCGACTCCTCT 62.743 66.667 8.23 0.00 0.00 3.69
132 133 2.829003 CTGCCCGCGACTCCTCTA 60.829 66.667 8.23 0.00 0.00 2.43
133 134 3.127352 CTGCCCGCGACTCCTCTAC 62.127 68.421 8.23 0.00 0.00 2.59
134 135 3.902086 GCCCGCGACTCCTCTACC 61.902 72.222 8.23 0.00 0.00 3.18
135 136 2.124236 CCCGCGACTCCTCTACCT 60.124 66.667 8.23 0.00 0.00 3.08
136 137 2.482333 CCCGCGACTCCTCTACCTG 61.482 68.421 8.23 0.00 0.00 4.00
137 138 2.482333 CCGCGACTCCTCTACCTGG 61.482 68.421 8.23 0.00 0.00 4.45
138 139 1.451567 CGCGACTCCTCTACCTGGA 60.452 63.158 0.00 0.00 0.00 3.86
151 152 3.842869 CCTGGAGGTTGCAGACTAC 57.157 57.895 0.00 0.00 38.14 2.73
152 153 0.976641 CCTGGAGGTTGCAGACTACA 59.023 55.000 4.77 4.77 38.14 2.74
153 154 1.556911 CCTGGAGGTTGCAGACTACAT 59.443 52.381 5.24 0.00 38.14 2.29
154 155 2.026822 CCTGGAGGTTGCAGACTACATT 60.027 50.000 5.24 0.00 38.14 2.71
155 156 3.005554 CTGGAGGTTGCAGACTACATTG 58.994 50.000 5.24 0.00 38.14 2.82
156 157 2.637382 TGGAGGTTGCAGACTACATTGA 59.363 45.455 0.84 0.00 0.00 2.57
157 158 3.265791 GGAGGTTGCAGACTACATTGAG 58.734 50.000 0.00 0.00 0.00 3.02
158 159 3.265791 GAGGTTGCAGACTACATTGAGG 58.734 50.000 0.00 0.00 0.00 3.86
159 160 2.906389 AGGTTGCAGACTACATTGAGGA 59.094 45.455 0.00 0.00 0.00 3.71
160 161 3.055530 AGGTTGCAGACTACATTGAGGAG 60.056 47.826 0.00 0.00 0.00 3.69
161 162 3.265791 GTTGCAGACTACATTGAGGAGG 58.734 50.000 0.00 0.00 0.00 4.30
162 163 2.820178 TGCAGACTACATTGAGGAGGA 58.180 47.619 0.00 0.00 0.00 3.71
163 164 2.497675 TGCAGACTACATTGAGGAGGAC 59.502 50.000 0.00 0.00 0.00 3.85
164 165 2.480416 GCAGACTACATTGAGGAGGACG 60.480 54.545 0.00 0.00 0.00 4.79
165 166 1.751924 AGACTACATTGAGGAGGACGC 59.248 52.381 0.00 0.00 0.00 5.19
166 167 0.824759 ACTACATTGAGGAGGACGCC 59.175 55.000 0.00 0.00 0.00 5.68
167 168 0.824109 CTACATTGAGGAGGACGCCA 59.176 55.000 0.00 0.00 0.00 5.69
168 169 1.414181 CTACATTGAGGAGGACGCCAT 59.586 52.381 0.00 0.00 0.00 4.40
169 170 0.179000 ACATTGAGGAGGACGCCATC 59.821 55.000 0.00 0.00 0.00 3.51
170 171 0.877649 CATTGAGGAGGACGCCATCG 60.878 60.000 0.00 0.00 42.43 3.84
171 172 2.650813 ATTGAGGAGGACGCCATCGC 62.651 60.000 0.00 0.00 39.84 4.58
172 173 4.593864 GAGGAGGACGCCATCGCC 62.594 72.222 0.00 0.00 39.84 5.54
204 205 4.379243 CCCAGCTGTCGCGAAGGT 62.379 66.667 12.06 13.59 42.32 3.50
205 206 3.114616 CCAGCTGTCGCGAAGGTG 61.115 66.667 28.01 28.01 41.70 4.00
206 207 2.356313 CAGCTGTCGCGAAGGTGT 60.356 61.111 27.27 7.59 42.32 4.16
207 208 1.956170 CAGCTGTCGCGAAGGTGTT 60.956 57.895 27.27 10.72 42.32 3.32
208 209 1.227556 AGCTGTCGCGAAGGTGTTT 60.228 52.632 12.06 0.00 42.32 2.83
209 210 1.082756 GCTGTCGCGAAGGTGTTTG 60.083 57.895 12.06 0.00 0.00 2.93
210 211 1.495584 GCTGTCGCGAAGGTGTTTGA 61.496 55.000 12.06 0.00 0.00 2.69
211 212 1.148310 CTGTCGCGAAGGTGTTTGAT 58.852 50.000 12.06 0.00 0.00 2.57
212 213 0.865111 TGTCGCGAAGGTGTTTGATG 59.135 50.000 12.06 0.00 0.00 3.07
213 214 0.452784 GTCGCGAAGGTGTTTGATGC 60.453 55.000 12.06 0.00 0.00 3.91
214 215 0.602638 TCGCGAAGGTGTTTGATGCT 60.603 50.000 6.20 0.00 0.00 3.79
215 216 1.075542 CGCGAAGGTGTTTGATGCTA 58.924 50.000 0.00 0.00 0.00 3.49
216 217 1.061131 CGCGAAGGTGTTTGATGCTAG 59.939 52.381 0.00 0.00 0.00 3.42
217 218 2.076863 GCGAAGGTGTTTGATGCTAGT 58.923 47.619 0.00 0.00 0.00 2.57
218 219 2.484264 GCGAAGGTGTTTGATGCTAGTT 59.516 45.455 0.00 0.00 0.00 2.24
219 220 3.667960 GCGAAGGTGTTTGATGCTAGTTG 60.668 47.826 0.00 0.00 0.00 3.16
220 221 3.745975 CGAAGGTGTTTGATGCTAGTTGA 59.254 43.478 0.00 0.00 0.00 3.18
221 222 4.393062 CGAAGGTGTTTGATGCTAGTTGAT 59.607 41.667 0.00 0.00 0.00 2.57
222 223 5.446473 CGAAGGTGTTTGATGCTAGTTGATC 60.446 44.000 0.00 0.00 0.00 2.92
223 224 4.910195 AGGTGTTTGATGCTAGTTGATCA 58.090 39.130 0.00 0.00 0.00 2.92
224 225 4.697352 AGGTGTTTGATGCTAGTTGATCAC 59.303 41.667 0.00 0.00 0.00 3.06
225 226 4.142600 GGTGTTTGATGCTAGTTGATCACC 60.143 45.833 0.00 0.00 35.61 4.02
226 227 4.697352 GTGTTTGATGCTAGTTGATCACCT 59.303 41.667 0.00 0.00 0.00 4.00
227 228 4.937620 TGTTTGATGCTAGTTGATCACCTC 59.062 41.667 0.00 0.00 0.00 3.85
228 229 3.443099 TGATGCTAGTTGATCACCTCG 57.557 47.619 0.00 0.00 0.00 4.63
229 230 3.023832 TGATGCTAGTTGATCACCTCGA 58.976 45.455 0.00 0.00 0.00 4.04
230 231 3.067320 TGATGCTAGTTGATCACCTCGAG 59.933 47.826 5.13 5.13 0.00 4.04
231 232 1.751351 TGCTAGTTGATCACCTCGAGG 59.249 52.381 30.11 30.11 42.17 4.63
232 233 2.025155 GCTAGTTGATCACCTCGAGGA 58.975 52.381 37.69 17.41 38.94 3.71
233 234 2.034053 GCTAGTTGATCACCTCGAGGAG 59.966 54.545 37.69 29.50 38.94 3.69
234 235 2.223803 AGTTGATCACCTCGAGGAGT 57.776 50.000 37.69 21.46 38.94 3.85
235 236 2.530701 AGTTGATCACCTCGAGGAGTT 58.469 47.619 37.69 24.27 38.94 3.01
236 237 2.494073 AGTTGATCACCTCGAGGAGTTC 59.506 50.000 37.69 30.15 38.94 3.01
237 238 2.215942 TGATCACCTCGAGGAGTTCA 57.784 50.000 37.69 32.16 38.94 3.18
238 239 2.525368 TGATCACCTCGAGGAGTTCAA 58.475 47.619 37.69 19.37 38.94 2.69
239 240 2.231478 TGATCACCTCGAGGAGTTCAAC 59.769 50.000 37.69 19.62 38.94 3.18
240 241 1.699730 TCACCTCGAGGAGTTCAACA 58.300 50.000 37.69 10.08 38.94 3.33
241 242 2.036387 TCACCTCGAGGAGTTCAACAA 58.964 47.619 37.69 9.31 38.94 2.83
242 243 2.035961 TCACCTCGAGGAGTTCAACAAG 59.964 50.000 37.69 12.76 38.94 3.16
243 244 1.270358 ACCTCGAGGAGTTCAACAAGC 60.270 52.381 37.69 0.00 38.94 4.01
244 245 1.063806 CTCGAGGAGTTCAACAAGCG 58.936 55.000 3.91 0.00 0.00 4.68
245 246 0.944311 TCGAGGAGTTCAACAAGCGC 60.944 55.000 0.00 0.00 0.00 5.92
246 247 0.946221 CGAGGAGTTCAACAAGCGCT 60.946 55.000 2.64 2.64 0.00 5.92
247 248 1.230324 GAGGAGTTCAACAAGCGCTT 58.770 50.000 18.98 18.98 0.00 4.68
248 249 1.195674 GAGGAGTTCAACAAGCGCTTC 59.804 52.381 22.21 8.03 0.00 3.86
249 250 0.238553 GGAGTTCAACAAGCGCTTCC 59.761 55.000 22.21 12.53 0.00 3.46
250 251 0.238553 GAGTTCAACAAGCGCTTCCC 59.761 55.000 22.21 4.46 0.00 3.97
251 252 1.172812 AGTTCAACAAGCGCTTCCCC 61.173 55.000 22.21 5.20 0.00 4.81
252 253 1.152860 TTCAACAAGCGCTTCCCCA 60.153 52.632 22.21 1.53 0.00 4.96
253 254 1.452145 TTCAACAAGCGCTTCCCCAC 61.452 55.000 22.21 0.00 0.00 4.61
254 255 2.597510 AACAAGCGCTTCCCCACC 60.598 61.111 22.21 0.00 0.00 4.61
255 256 3.133365 AACAAGCGCTTCCCCACCT 62.133 57.895 22.21 0.00 0.00 4.00
256 257 2.282462 CAAGCGCTTCCCCACCTT 60.282 61.111 22.21 0.00 0.00 3.50
257 258 1.002624 CAAGCGCTTCCCCACCTTA 60.003 57.895 22.21 0.00 0.00 2.69
258 259 1.002502 AAGCGCTTCCCCACCTTAC 60.003 57.895 18.98 0.00 0.00 2.34
259 260 1.774894 AAGCGCTTCCCCACCTTACA 61.775 55.000 18.98 0.00 0.00 2.41
260 261 1.745489 GCGCTTCCCCACCTTACAG 60.745 63.158 0.00 0.00 0.00 2.74
261 262 1.745489 CGCTTCCCCACCTTACAGC 60.745 63.158 0.00 0.00 0.00 4.40
262 263 1.685820 GCTTCCCCACCTTACAGCT 59.314 57.895 0.00 0.00 0.00 4.24
263 264 0.393132 GCTTCCCCACCTTACAGCTC 60.393 60.000 0.00 0.00 0.00 4.09
264 265 0.108138 CTTCCCCACCTTACAGCTCG 60.108 60.000 0.00 0.00 0.00 5.03
265 266 0.543410 TTCCCCACCTTACAGCTCGA 60.543 55.000 0.00 0.00 0.00 4.04
266 267 0.970937 TCCCCACCTTACAGCTCGAG 60.971 60.000 8.45 8.45 0.00 4.04
267 268 1.517832 CCCACCTTACAGCTCGAGG 59.482 63.158 15.58 0.17 36.62 4.63
268 269 0.970937 CCCACCTTACAGCTCGAGGA 60.971 60.000 15.58 0.00 34.61 3.71
269 270 0.173708 CCACCTTACAGCTCGAGGAC 59.826 60.000 15.58 0.00 34.61 3.85
270 271 0.179161 CACCTTACAGCTCGAGGACG 60.179 60.000 15.58 0.00 41.26 4.79
271 272 0.322277 ACCTTACAGCTCGAGGACGA 60.322 55.000 15.58 0.00 46.56 4.20
281 282 2.347697 TCGAGGACGAGATGTTTGTG 57.652 50.000 0.00 0.00 43.81 3.33
282 283 0.716108 CGAGGACGAGATGTTTGTGC 59.284 55.000 0.00 0.00 42.66 4.57
283 284 1.795768 GAGGACGAGATGTTTGTGCA 58.204 50.000 0.00 0.00 34.13 4.57
284 285 1.728971 GAGGACGAGATGTTTGTGCAG 59.271 52.381 0.00 0.00 34.13 4.41
285 286 0.798776 GGACGAGATGTTTGTGCAGG 59.201 55.000 0.00 0.00 32.09 4.85
286 287 0.166814 GACGAGATGTTTGTGCAGGC 59.833 55.000 0.00 0.00 0.00 4.85
287 288 1.133253 CGAGATGTTTGTGCAGGCG 59.867 57.895 0.00 0.00 0.00 5.52
288 289 1.503542 GAGATGTTTGTGCAGGCGG 59.496 57.895 0.00 0.00 0.00 6.13
289 290 1.926511 GAGATGTTTGTGCAGGCGGG 61.927 60.000 0.00 0.00 0.00 6.13
290 291 2.990967 ATGTTTGTGCAGGCGGGG 60.991 61.111 0.00 0.00 0.00 5.73
291 292 3.505790 ATGTTTGTGCAGGCGGGGA 62.506 57.895 0.00 0.00 0.00 4.81
292 293 3.365265 GTTTGTGCAGGCGGGGAG 61.365 66.667 0.00 0.00 0.00 4.30
293 294 3.565214 TTTGTGCAGGCGGGGAGA 61.565 61.111 0.00 0.00 0.00 3.71
294 295 3.126703 TTTGTGCAGGCGGGGAGAA 62.127 57.895 0.00 0.00 0.00 2.87
295 296 3.551496 TTGTGCAGGCGGGGAGAAG 62.551 63.158 0.00 0.00 0.00 2.85
296 297 4.021925 GTGCAGGCGGGGAGAAGT 62.022 66.667 0.00 0.00 0.00 3.01
297 298 4.020617 TGCAGGCGGGGAGAAGTG 62.021 66.667 0.00 0.00 0.00 3.16
298 299 4.021925 GCAGGCGGGGAGAAGTGT 62.022 66.667 0.00 0.00 0.00 3.55
299 300 2.750350 CAGGCGGGGAGAAGTGTT 59.250 61.111 0.00 0.00 0.00 3.32
300 301 1.980052 CAGGCGGGGAGAAGTGTTA 59.020 57.895 0.00 0.00 0.00 2.41
301 302 0.541863 CAGGCGGGGAGAAGTGTTAT 59.458 55.000 0.00 0.00 0.00 1.89
302 303 0.541863 AGGCGGGGAGAAGTGTTATG 59.458 55.000 0.00 0.00 0.00 1.90
303 304 0.539986 GGCGGGGAGAAGTGTTATGA 59.460 55.000 0.00 0.00 0.00 2.15
304 305 1.653151 GCGGGGAGAAGTGTTATGAC 58.347 55.000 0.00 0.00 0.00 3.06
305 306 1.742750 GCGGGGAGAAGTGTTATGACC 60.743 57.143 0.00 0.00 0.00 4.02
306 307 1.470979 CGGGGAGAAGTGTTATGACCG 60.471 57.143 0.00 0.00 0.00 4.79
307 308 1.134491 GGGGAGAAGTGTTATGACCGG 60.134 57.143 0.00 0.00 0.00 5.28
308 309 1.653151 GGAGAAGTGTTATGACCGGC 58.347 55.000 0.00 0.00 0.00 6.13
309 310 1.066430 GGAGAAGTGTTATGACCGGCA 60.066 52.381 0.00 0.00 0.00 5.69
310 311 2.420129 GGAGAAGTGTTATGACCGGCAT 60.420 50.000 14.43 14.43 41.08 4.40
311 312 3.181469 GGAGAAGTGTTATGACCGGCATA 60.181 47.826 0.00 7.99 38.44 3.14
312 313 4.503296 GGAGAAGTGTTATGACCGGCATAT 60.503 45.833 16.09 5.40 39.15 1.78
313 314 5.036117 AGAAGTGTTATGACCGGCATATT 57.964 39.130 16.09 9.56 39.15 1.28
314 315 6.169557 AGAAGTGTTATGACCGGCATATTA 57.830 37.500 16.09 8.23 39.15 0.98
315 316 6.223852 AGAAGTGTTATGACCGGCATATTAG 58.776 40.000 16.09 0.00 39.15 1.73
316 317 4.894784 AGTGTTATGACCGGCATATTAGG 58.105 43.478 16.09 0.00 39.15 2.69
317 318 4.000988 GTGTTATGACCGGCATATTAGGG 58.999 47.826 16.09 0.00 39.15 3.53
318 319 3.008594 TGTTATGACCGGCATATTAGGGG 59.991 47.826 16.09 0.00 39.15 4.79
319 320 0.328258 ATGACCGGCATATTAGGGGC 59.672 55.000 0.00 0.00 34.82 5.80
320 321 0.766674 TGACCGGCATATTAGGGGCT 60.767 55.000 0.00 0.00 0.00 5.19
321 322 0.400594 GACCGGCATATTAGGGGCTT 59.599 55.000 0.00 0.00 0.00 4.35
322 323 1.626825 GACCGGCATATTAGGGGCTTA 59.373 52.381 0.00 0.00 0.00 3.09
323 324 1.628846 ACCGGCATATTAGGGGCTTAG 59.371 52.381 0.00 0.00 0.00 2.18
324 325 1.679032 CCGGCATATTAGGGGCTTAGC 60.679 57.143 0.00 0.00 0.00 3.09
334 335 2.763902 GGCTTAGCCCACTGGGTT 59.236 61.111 13.12 12.42 46.51 4.11
335 336 1.678970 GGCTTAGCCCACTGGGTTG 60.679 63.158 13.12 0.00 46.51 3.77
336 337 1.074951 GCTTAGCCCACTGGGTTGT 59.925 57.895 16.03 3.69 46.51 3.32
337 338 1.244019 GCTTAGCCCACTGGGTTGTG 61.244 60.000 16.03 8.08 46.51 3.33
350 351 2.215942 GGTTGTGGCCCAAGTTATCT 57.784 50.000 0.00 0.00 32.51 1.98
351 352 2.525368 GGTTGTGGCCCAAGTTATCTT 58.475 47.619 0.00 0.00 32.51 2.40
352 353 3.692690 GGTTGTGGCCCAAGTTATCTTA 58.307 45.455 0.00 0.00 32.51 2.10
353 354 4.278310 GGTTGTGGCCCAAGTTATCTTAT 58.722 43.478 0.00 0.00 32.51 1.73
354 355 4.338400 GGTTGTGGCCCAAGTTATCTTATC 59.662 45.833 0.00 0.00 32.51 1.75
355 356 3.804036 TGTGGCCCAAGTTATCTTATCG 58.196 45.455 0.00 0.00 32.07 2.92
356 357 3.199071 TGTGGCCCAAGTTATCTTATCGT 59.801 43.478 0.00 0.00 32.07 3.73
357 358 4.196971 GTGGCCCAAGTTATCTTATCGTT 58.803 43.478 0.00 0.00 32.07 3.85
358 359 5.104859 TGTGGCCCAAGTTATCTTATCGTTA 60.105 40.000 0.00 0.00 32.07 3.18
359 360 5.995897 GTGGCCCAAGTTATCTTATCGTTAT 59.004 40.000 0.00 0.00 32.07 1.89
360 361 6.485648 GTGGCCCAAGTTATCTTATCGTTATT 59.514 38.462 0.00 0.00 32.07 1.40
361 362 7.658575 GTGGCCCAAGTTATCTTATCGTTATTA 59.341 37.037 0.00 0.00 32.07 0.98
362 363 7.876068 TGGCCCAAGTTATCTTATCGTTATTAG 59.124 37.037 0.00 0.00 32.07 1.73
363 364 7.333672 GGCCCAAGTTATCTTATCGTTATTAGG 59.666 40.741 0.00 0.00 32.07 2.69
364 365 7.333672 GCCCAAGTTATCTTATCGTTATTAGGG 59.666 40.741 0.00 0.00 32.07 3.53
365 366 7.822822 CCCAAGTTATCTTATCGTTATTAGGGG 59.177 40.741 0.00 0.00 32.07 4.79
366 367 7.333672 CCAAGTTATCTTATCGTTATTAGGGGC 59.666 40.741 0.00 0.00 32.07 5.80
367 368 7.793948 AGTTATCTTATCGTTATTAGGGGCT 57.206 36.000 0.00 0.00 0.00 5.19
368 369 8.203681 AGTTATCTTATCGTTATTAGGGGCTT 57.796 34.615 0.00 0.00 0.00 4.35
369 370 9.317827 AGTTATCTTATCGTTATTAGGGGCTTA 57.682 33.333 0.00 0.00 0.00 3.09
370 371 9.583765 GTTATCTTATCGTTATTAGGGGCTTAG 57.416 37.037 0.00 0.00 0.00 2.18
371 372 6.034161 TCTTATCGTTATTAGGGGCTTAGC 57.966 41.667 0.00 0.00 0.00 3.09
386 387 5.803020 GGCTTAGCCCAATTATCTTATCG 57.197 43.478 13.12 0.00 44.06 2.92
387 388 4.095036 GGCTTAGCCCAATTATCTTATCGC 59.905 45.833 13.12 0.00 44.06 4.58
388 389 4.938226 GCTTAGCCCAATTATCTTATCGCT 59.062 41.667 0.00 0.00 0.00 4.93
389 390 6.106673 GCTTAGCCCAATTATCTTATCGCTA 58.893 40.000 0.00 0.00 0.00 4.26
390 391 6.763610 GCTTAGCCCAATTATCTTATCGCTAT 59.236 38.462 0.00 0.00 0.00 2.97
391 392 7.281100 GCTTAGCCCAATTATCTTATCGCTATT 59.719 37.037 0.00 0.00 0.00 1.73
392 393 9.817809 CTTAGCCCAATTATCTTATCGCTATTA 57.182 33.333 0.00 0.00 0.00 0.98
393 394 9.817809 TTAGCCCAATTATCTTATCGCTATTAG 57.182 33.333 0.00 0.00 0.00 1.73
394 395 7.275920 AGCCCAATTATCTTATCGCTATTAGG 58.724 38.462 0.00 0.00 0.00 2.69
395 396 7.125811 AGCCCAATTATCTTATCGCTATTAGGA 59.874 37.037 0.00 0.00 0.00 2.94
396 397 7.934120 GCCCAATTATCTTATCGCTATTAGGAT 59.066 37.037 0.00 0.00 0.00 3.24
397 398 9.482627 CCCAATTATCTTATCGCTATTAGGATC 57.517 37.037 0.00 0.00 0.00 3.36
398 399 9.186323 CCAATTATCTTATCGCTATTAGGATCG 57.814 37.037 0.00 0.00 0.00 3.69
399 400 9.737427 CAATTATCTTATCGCTATTAGGATCGT 57.263 33.333 0.00 0.00 0.00 3.73
402 403 9.569167 TTATCTTATCGCTATTAGGATCGTTTG 57.431 33.333 0.00 0.00 0.00 2.93
403 404 5.862323 TCTTATCGCTATTAGGATCGTTTGC 59.138 40.000 0.00 0.00 0.00 3.68
404 405 3.728076 TCGCTATTAGGATCGTTTGCT 57.272 42.857 0.00 0.00 0.00 3.91
405 406 4.054780 TCGCTATTAGGATCGTTTGCTT 57.945 40.909 0.00 0.00 0.00 3.91
406 407 5.190992 TCGCTATTAGGATCGTTTGCTTA 57.809 39.130 0.00 0.00 0.00 3.09
407 408 5.220381 TCGCTATTAGGATCGTTTGCTTAG 58.780 41.667 0.00 0.00 0.00 2.18
408 409 4.386049 CGCTATTAGGATCGTTTGCTTAGG 59.614 45.833 0.00 0.00 0.00 2.69
409 410 5.539048 GCTATTAGGATCGTTTGCTTAGGA 58.461 41.667 0.00 0.00 0.00 2.94
410 411 5.635700 GCTATTAGGATCGTTTGCTTAGGAG 59.364 44.000 0.00 0.00 0.00 3.69
411 412 5.615925 ATTAGGATCGTTTGCTTAGGAGT 57.384 39.130 0.00 0.00 0.00 3.85
412 413 3.528597 AGGATCGTTTGCTTAGGAGTC 57.471 47.619 0.00 0.00 0.00 3.36
413 414 2.832129 AGGATCGTTTGCTTAGGAGTCA 59.168 45.455 0.00 0.00 0.00 3.41
414 415 3.260884 AGGATCGTTTGCTTAGGAGTCAA 59.739 43.478 0.00 0.00 0.00 3.18
415 416 3.619038 GGATCGTTTGCTTAGGAGTCAAG 59.381 47.826 0.00 0.00 0.00 3.02
416 417 3.746045 TCGTTTGCTTAGGAGTCAAGT 57.254 42.857 0.00 0.00 0.00 3.16
417 418 4.859304 TCGTTTGCTTAGGAGTCAAGTA 57.141 40.909 0.00 0.00 0.00 2.24
418 419 5.204409 TCGTTTGCTTAGGAGTCAAGTAA 57.796 39.130 0.00 0.00 0.00 2.24
419 420 5.603596 TCGTTTGCTTAGGAGTCAAGTAAA 58.396 37.500 3.38 3.38 35.92 2.01
420 421 5.464389 TCGTTTGCTTAGGAGTCAAGTAAAC 59.536 40.000 18.76 18.76 46.38 2.01
421 422 5.333875 CGTTTGCTTAGGAGTCAAGTAAACC 60.334 44.000 20.91 10.72 46.78 3.27
422 423 5.562298 TTGCTTAGGAGTCAAGTAAACCT 57.438 39.130 0.00 0.00 35.11 3.50
423 424 5.148651 TGCTTAGGAGTCAAGTAAACCTC 57.851 43.478 0.00 0.00 32.90 3.85
424 425 4.838986 TGCTTAGGAGTCAAGTAAACCTCT 59.161 41.667 0.00 0.00 32.90 3.69
425 426 5.047235 TGCTTAGGAGTCAAGTAAACCTCTC 60.047 44.000 0.00 0.00 32.90 3.20
426 427 5.186215 GCTTAGGAGTCAAGTAAACCTCTCT 59.814 44.000 0.00 0.00 32.90 3.10
427 428 6.377712 GCTTAGGAGTCAAGTAAACCTCTCTA 59.622 42.308 0.00 0.00 32.90 2.43
428 429 7.068962 GCTTAGGAGTCAAGTAAACCTCTCTAT 59.931 40.741 0.00 0.00 32.90 1.98
429 430 9.629878 CTTAGGAGTCAAGTAAACCTCTCTATA 57.370 37.037 0.00 0.00 32.90 1.31
456 457 8.971032 AAGGAGAGGAGATGTATCAATCTAAT 57.029 34.615 0.00 0.00 37.03 1.73
457 458 8.593945 AGGAGAGGAGATGTATCAATCTAATC 57.406 38.462 0.00 0.00 37.03 1.75
458 459 8.176105 AGGAGAGGAGATGTATCAATCTAATCA 58.824 37.037 0.00 0.00 37.03 2.57
459 460 8.811017 GGAGAGGAGATGTATCAATCTAATCAA 58.189 37.037 0.00 0.00 37.03 2.57
460 461 9.859427 GAGAGGAGATGTATCAATCTAATCAAG 57.141 37.037 0.00 0.00 37.03 3.02
461 462 8.313292 AGAGGAGATGTATCAATCTAATCAAGC 58.687 37.037 0.00 0.00 37.03 4.01
462 463 7.971201 AGGAGATGTATCAATCTAATCAAGCA 58.029 34.615 0.00 0.00 37.03 3.91
463 464 8.435187 AGGAGATGTATCAATCTAATCAAGCAA 58.565 33.333 0.00 0.00 37.03 3.91
464 465 8.719648 GGAGATGTATCAATCTAATCAAGCAAG 58.280 37.037 0.00 0.00 37.03 4.01
465 466 9.486497 GAGATGTATCAATCTAATCAAGCAAGA 57.514 33.333 0.00 0.00 37.03 3.02
466 467 9.842775 AGATGTATCAATCTAATCAAGCAAGAA 57.157 29.630 0.00 0.00 35.09 2.52
476 477 9.911788 ATCTAATCAAGCAAGAATTAAGAAGGA 57.088 29.630 0.00 0.00 0.00 3.36
477 478 9.739276 TCTAATCAAGCAAGAATTAAGAAGGAA 57.261 29.630 0.00 0.00 0.00 3.36
480 481 9.866798 AATCAAGCAAGAATTAAGAAGGAAATC 57.133 29.630 0.00 0.00 0.00 2.17
481 482 7.830739 TCAAGCAAGAATTAAGAAGGAAATCC 58.169 34.615 0.00 0.00 0.00 3.01
482 483 6.782082 AGCAAGAATTAAGAAGGAAATCCC 57.218 37.500 0.00 0.00 36.42 3.85
494 495 1.769026 GAAATCCCTTCCCTCTTGCC 58.231 55.000 0.00 0.00 0.00 4.52
495 496 0.336392 AAATCCCTTCCCTCTTGCCC 59.664 55.000 0.00 0.00 0.00 5.36
496 497 1.926426 AATCCCTTCCCTCTTGCCCG 61.926 60.000 0.00 0.00 0.00 6.13
497 498 4.115199 CCCTTCCCTCTTGCCCGG 62.115 72.222 0.00 0.00 0.00 5.73
498 499 4.803908 CCTTCCCTCTTGCCCGGC 62.804 72.222 1.04 1.04 0.00 6.13
499 500 3.721706 CTTCCCTCTTGCCCGGCT 61.722 66.667 11.61 0.00 0.00 5.52
500 501 3.984193 CTTCCCTCTTGCCCGGCTG 62.984 68.421 11.61 3.78 0.00 4.85
510 511 3.230245 CCCGGCTGTGGGCAAAAA 61.230 61.111 0.00 0.00 43.70 1.94
511 512 2.339712 CCGGCTGTGGGCAAAAAG 59.660 61.111 0.00 0.00 44.01 2.27
512 513 2.339712 CGGCTGTGGGCAAAAAGG 59.660 61.111 0.00 0.00 44.01 3.11
513 514 2.031012 GGCTGTGGGCAAAAAGGC 59.969 61.111 0.00 0.00 44.01 4.35
543 544 2.203224 CTCTCGCGCCCTCCTCTA 60.203 66.667 0.00 0.00 0.00 2.43
544 545 2.203224 TCTCGCGCCCTCCTCTAG 60.203 66.667 0.00 0.00 0.00 2.43
545 546 3.972276 CTCGCGCCCTCCTCTAGC 61.972 72.222 0.00 0.00 0.00 3.42
546 547 4.815108 TCGCGCCCTCCTCTAGCA 62.815 66.667 0.00 0.00 0.00 3.49
547 548 4.277593 CGCGCCCTCCTCTAGCAG 62.278 72.222 0.00 0.00 0.00 4.24
548 549 4.600576 GCGCCCTCCTCTAGCAGC 62.601 72.222 0.00 0.00 0.00 5.25
549 550 3.922640 CGCCCTCCTCTAGCAGCC 61.923 72.222 0.00 0.00 0.00 4.85
550 551 2.765807 GCCCTCCTCTAGCAGCCA 60.766 66.667 0.00 0.00 0.00 4.75
551 552 3.100503 GCCCTCCTCTAGCAGCCAC 62.101 68.421 0.00 0.00 0.00 5.01
552 553 1.687146 CCCTCCTCTAGCAGCCACA 60.687 63.158 0.00 0.00 0.00 4.17
553 554 1.053264 CCCTCCTCTAGCAGCCACAT 61.053 60.000 0.00 0.00 0.00 3.21
554 555 1.709578 CCTCCTCTAGCAGCCACATA 58.290 55.000 0.00 0.00 0.00 2.29
555 556 2.042464 CCTCCTCTAGCAGCCACATAA 58.958 52.381 0.00 0.00 0.00 1.90
556 557 2.224161 CCTCCTCTAGCAGCCACATAAC 60.224 54.545 0.00 0.00 0.00 1.89
615 616 6.525578 AACTCGAGTCCATTCAGTACATAA 57.474 37.500 20.33 0.00 0.00 1.90
631 632 2.764572 ACATAAGTTGTAGACGGAGGGG 59.235 50.000 0.00 0.00 36.57 4.79
632 633 1.856629 TAAGTTGTAGACGGAGGGGG 58.143 55.000 0.00 0.00 0.00 5.40
633 634 0.115745 AAGTTGTAGACGGAGGGGGA 59.884 55.000 0.00 0.00 0.00 4.81
634 635 0.338814 AGTTGTAGACGGAGGGGGAT 59.661 55.000 0.00 0.00 0.00 3.85
635 636 1.572415 AGTTGTAGACGGAGGGGGATA 59.428 52.381 0.00 0.00 0.00 2.59
636 637 1.962100 GTTGTAGACGGAGGGGGATAG 59.038 57.143 0.00 0.00 0.00 2.08
717 718 4.341806 TCCTGTGTCATTTTTCAACAGCAT 59.658 37.500 0.00 0.00 0.00 3.79
718 719 5.051816 CCTGTGTCATTTTTCAACAGCATT 58.948 37.500 0.00 0.00 0.00 3.56
719 720 6.040278 TCCTGTGTCATTTTTCAACAGCATTA 59.960 34.615 0.00 0.00 0.00 1.90
720 721 6.700960 CCTGTGTCATTTTTCAACAGCATTAA 59.299 34.615 0.00 0.00 0.00 1.40
721 722 7.224362 CCTGTGTCATTTTTCAACAGCATTAAA 59.776 33.333 0.00 0.00 0.00 1.52
722 723 8.484641 TGTGTCATTTTTCAACAGCATTAAAA 57.515 26.923 0.00 0.00 0.00 1.52
723 724 8.602328 TGTGTCATTTTTCAACAGCATTAAAAG 58.398 29.630 0.00 0.00 0.00 2.27
724 725 8.816144 GTGTCATTTTTCAACAGCATTAAAAGA 58.184 29.630 0.00 0.00 0.00 2.52
725 726 9.376075 TGTCATTTTTCAACAGCATTAAAAGAA 57.624 25.926 0.00 0.00 0.00 2.52
731 732 7.784633 TTCAACAGCATTAAAAGAAAAAGGG 57.215 32.000 0.00 0.00 0.00 3.95
732 733 7.118496 TCAACAGCATTAAAAGAAAAAGGGA 57.882 32.000 0.00 0.00 0.00 4.20
733 734 7.560368 TCAACAGCATTAAAAGAAAAAGGGAA 58.440 30.769 0.00 0.00 0.00 3.97
734 735 8.043710 TCAACAGCATTAAAAGAAAAAGGGAAA 58.956 29.630 0.00 0.00 0.00 3.13
735 736 7.786178 ACAGCATTAAAAGAAAAAGGGAAAC 57.214 32.000 0.00 0.00 0.00 2.78
736 737 7.334858 ACAGCATTAAAAGAAAAAGGGAAACA 58.665 30.769 0.00 0.00 0.00 2.83
737 738 7.495606 ACAGCATTAAAAGAAAAAGGGAAACAG 59.504 33.333 0.00 0.00 0.00 3.16
738 739 6.992123 AGCATTAAAAGAAAAAGGGAAACAGG 59.008 34.615 0.00 0.00 0.00 4.00
739 740 6.293407 GCATTAAAAGAAAAAGGGAAACAGGC 60.293 38.462 0.00 0.00 0.00 4.85
740 741 6.553953 TTAAAAGAAAAAGGGAAACAGGCT 57.446 33.333 0.00 0.00 0.00 4.58
741 742 4.406648 AAAGAAAAAGGGAAACAGGCTG 57.593 40.909 14.16 14.16 0.00 4.85
742 743 1.688735 AGAAAAAGGGAAACAGGCTGC 59.311 47.619 15.89 0.00 0.00 5.25
743 744 1.688735 GAAAAAGGGAAACAGGCTGCT 59.311 47.619 15.89 0.00 0.00 4.24
744 745 1.332195 AAAAGGGAAACAGGCTGCTC 58.668 50.000 15.89 11.49 0.00 4.26
745 746 0.185901 AAAGGGAAACAGGCTGCTCA 59.814 50.000 15.89 0.00 0.00 4.26
746 747 0.251077 AAGGGAAACAGGCTGCTCAG 60.251 55.000 15.89 0.00 0.00 3.35
804 805 2.156917 CAAGAGCAGTCAAAGATGGCA 58.843 47.619 0.00 0.00 31.99 4.92
841 842 1.028868 GTCATCCACAGCAGCTTCCC 61.029 60.000 0.00 0.00 0.00 3.97
1051 1065 3.688694 TGTTGTACCTTCGCCTATTGT 57.311 42.857 0.00 0.00 0.00 2.71
1463 1480 3.698040 CTCACAGGGAAAATTCCTCATGG 59.302 47.826 11.75 1.15 46.72 3.66
1885 1902 6.862469 ATGAAAATCAAATCACAGGTCCAT 57.138 33.333 0.00 0.00 0.00 3.41
1998 2015 6.238320 GCAACCTCACTATGCTAAATTCTCTG 60.238 42.308 0.00 0.00 37.12 3.35
2113 2130 1.419012 CTGGCTCTATTCCTGGCATCA 59.581 52.381 0.00 0.00 35.77 3.07
2272 2290 5.005299 CCGAAAACTTTTGGTAAGTTGCAAG 59.995 40.000 0.00 0.00 40.10 4.01
2358 2376 7.309867 GGAGATCTCACAAACCTTGTTAGACTA 60.310 40.741 23.85 0.00 44.10 2.59
2643 2661 1.651987 CATGTACCCAGCTAACGGTG 58.348 55.000 9.09 0.00 38.35 4.94
2746 2769 3.064958 CAGTTCTAATCGTCTCAGCGGTA 59.935 47.826 0.00 0.00 0.00 4.02
2747 2770 3.312973 AGTTCTAATCGTCTCAGCGGTAG 59.687 47.826 0.00 0.00 0.00 3.18
2974 3211 2.594592 GGAGTTTGCCTGGTGCGT 60.595 61.111 0.00 0.00 45.60 5.24
3121 3358 1.530183 GGCAGCATTCCATCCTCCC 60.530 63.158 0.00 0.00 0.00 4.30
3216 3453 3.166657 GCTACTTCAAAATGCTTCAGCG 58.833 45.455 0.00 0.00 45.83 5.18
3285 3522 2.176045 CCACCTTGTTATTCAACCCCC 58.824 52.381 0.00 0.00 33.41 5.40
3292 3532 2.306512 TGTTATTCAACCCCCGTAGCTT 59.693 45.455 0.00 0.00 33.41 3.74
3345 3585 5.695816 GCTTTTGCCAATTGTTCTTGTGATA 59.304 36.000 4.43 0.00 40.15 2.15
3534 3774 9.388506 GATGATAAGTACATCATTGGAATAGGG 57.611 37.037 9.39 0.00 43.97 3.53
3729 3969 5.236478 CCATCCAGCGTATAAATTTCTCGTT 59.764 40.000 0.00 0.00 0.00 3.85
3903 4143 5.237996 CCATCGAGATATCACAAGCAACAAT 59.762 40.000 5.32 0.00 0.00 2.71
4292 4662 2.289072 CCAACAACACCACCAACAACAA 60.289 45.455 0.00 0.00 0.00 2.83
4303 4673 5.186797 ACCACCAACAACAAAAGAGAATCAA 59.813 36.000 0.00 0.00 37.82 2.57
4379 4749 1.450312 CCAACGATGAGGGAGGCAC 60.450 63.158 0.00 0.00 0.00 5.01
4434 4805 2.046700 CCCCGTGCCTTTTAGCGA 60.047 61.111 0.00 0.00 34.65 4.93
4448 4819 6.674760 GCCTTTTAGCGAACTTACATTACAGG 60.675 42.308 0.00 0.00 0.00 4.00
4451 4822 7.966246 TTTAGCGAACTTACATTACAGGAAA 57.034 32.000 0.00 0.00 0.00 3.13
4456 4827 8.038944 AGCGAACTTACATTACAGGAAATAAGA 58.961 33.333 6.74 0.00 0.00 2.10
4457 4828 8.328864 GCGAACTTACATTACAGGAAATAAGAG 58.671 37.037 6.74 1.28 0.00 2.85
4458 4829 9.582431 CGAACTTACATTACAGGAAATAAGAGA 57.418 33.333 6.74 0.00 0.00 3.10
4555 4953 1.795768 TGCCTCGAGTCATGTTGAAC 58.204 50.000 12.31 0.00 0.00 3.18
4594 4993 8.028938 CCATGTCATCTCGAAGGTTTTATTTTT 58.971 33.333 0.00 0.00 0.00 1.94
4660 5060 1.523938 GGCCGGATCAGTAGTTGCC 60.524 63.158 5.05 0.00 0.00 4.52
4670 5070 2.766313 CAGTAGTTGCCTGCTGTTACA 58.234 47.619 0.88 0.00 43.91 2.41
4720 5120 2.924290 GCAGTAGCGTCTTAGAACTTGG 59.076 50.000 0.00 0.00 0.00 3.61
4736 5137 1.143329 TTGGGGCATGGTAAGGGACA 61.143 55.000 0.00 0.00 0.00 4.02
4748 5149 1.508667 AAGGGACATGGGATGGCACA 61.509 55.000 0.00 0.00 46.99 4.57
4835 5240 8.787852 AGCTGTTTAAATAAAGAGGAGAACAAG 58.212 33.333 10.84 0.00 37.14 3.16
4901 5307 4.074799 TCACTAATTCTTCTCCCTCCCA 57.925 45.455 0.00 0.00 0.00 4.37
4972 5378 2.231478 AGTCTATGTGTCTGTCCGGTTG 59.769 50.000 0.00 0.00 0.00 3.77
4981 5387 1.879380 TCTGTCCGGTTGCTTGAAATG 59.121 47.619 0.00 0.00 0.00 2.32
5000 5406 2.691927 TGTGTGCAGTCTCTATGCTTG 58.308 47.619 0.00 0.00 44.17 4.01
5004 5410 3.118665 TGTGCAGTCTCTATGCTTGCATA 60.119 43.478 13.72 13.72 44.17 3.14
5013 5419 7.655328 AGTCTCTATGCTTGCATATGTTTAGAC 59.345 37.037 14.63 18.02 0.00 2.59
5044 5450 5.241506 CCCACATGTGACACTTTCTTTATGT 59.758 40.000 27.46 3.57 0.00 2.29
5122 5531 0.107459 GCTCCCATGAACCTGAGGAC 60.107 60.000 4.99 0.00 0.00 3.85
5124 5533 0.252057 TCCCATGAACCTGAGGACGA 60.252 55.000 4.99 0.00 0.00 4.20
5128 5537 3.146066 CCATGAACCTGAGGACGAAAAA 58.854 45.455 4.99 0.00 0.00 1.94
5159 5568 8.259411 AGAATCCTAATCTGATGTGATATCAGC 58.741 37.037 13.56 2.14 43.79 4.26
5160 5569 5.958955 TCCTAATCTGATGTGATATCAGCG 58.041 41.667 13.56 3.37 43.79 5.18
5165 5574 3.055591 CTGATGTGATATCAGCGGTCAC 58.944 50.000 5.42 0.00 41.90 3.67
5189 5598 5.587289 GCTTCATTGTGTAAACAGGAACAA 58.413 37.500 0.00 0.00 36.98 2.83
5192 5601 7.306749 GCTTCATTGTGTAAACAGGAACAAATG 60.307 37.037 0.00 0.00 36.23 2.32
5195 5604 7.704472 TCATTGTGTAAACAGGAACAAATGAAC 59.296 33.333 0.00 0.00 36.23 3.18
5203 5612 4.336993 ACAGGAACAAATGAACGTAAGCAA 59.663 37.500 0.00 0.00 45.62 3.91
5205 5614 3.668656 GGAACAAATGAACGTAAGCAAGC 59.331 43.478 0.00 0.00 45.62 4.01
5207 5616 2.241722 CAAATGAACGTAAGCAAGCGG 58.758 47.619 0.00 0.00 45.62 5.52
5209 5618 2.024176 ATGAACGTAAGCAAGCGGAT 57.976 45.000 0.00 0.00 45.62 4.18
5219 5628 0.533755 GCAAGCGGATCTAGGTGCAT 60.534 55.000 0.00 0.00 0.00 3.96
5221 5630 2.681706 CAAGCGGATCTAGGTGCATAG 58.318 52.381 0.00 0.00 0.00 2.23
5222 5631 1.261480 AGCGGATCTAGGTGCATAGG 58.739 55.000 0.00 0.00 0.00 2.57
5225 5634 2.353208 GCGGATCTAGGTGCATAGGAAG 60.353 54.545 0.00 0.00 0.00 3.46
5227 5636 2.569404 GGATCTAGGTGCATAGGAAGGG 59.431 54.545 0.00 0.00 0.00 3.95
5231 5640 4.108570 TCTAGGTGCATAGGAAGGGAAAA 58.891 43.478 0.00 0.00 0.00 2.29
5268 5677 8.240883 CTATGTAAAAGAACTTACAGAGCGTT 57.759 34.615 5.49 0.00 41.56 4.84
5270 5679 5.813672 TGTAAAAGAACTTACAGAGCGTTGT 59.186 36.000 1.84 1.84 36.97 3.32
5281 5690 2.926200 CAGAGCGTTGTAGGACAATCAG 59.074 50.000 0.00 0.00 40.59 2.90
5293 5702 2.948315 GGACAATCAGAGGGAATCAAGC 59.052 50.000 0.00 0.00 0.00 4.01
5303 5713 6.721208 TCAGAGGGAATCAAGCAAATTAAAGT 59.279 34.615 0.00 0.00 0.00 2.66
5307 5717 8.593945 AGGGAATCAAGCAAATTAAAGTATGA 57.406 30.769 0.00 0.00 0.00 2.15
5313 5725 9.643693 ATCAAGCAAATTAAAGTATGAGGTTTG 57.356 29.630 0.00 0.00 0.00 2.93
5327 5739 7.989741 AGTATGAGGTTTGAGATGTTCAATAGG 59.010 37.037 0.00 0.00 44.90 2.57
5330 5742 6.139679 AGGTTTGAGATGTTCAATAGGGAA 57.860 37.500 0.00 0.00 44.90 3.97
5344 5756 6.924111 TCAATAGGGAATTCAAAGTTCAAGC 58.076 36.000 7.93 0.00 0.00 4.01
5350 5762 6.042437 AGGGAATTCAAAGTTCAAGCTCAAAT 59.958 34.615 7.93 0.00 0.00 2.32
5357 5769 6.209986 TCAAAGTTCAAGCTCAAATCCATCAT 59.790 34.615 0.00 0.00 0.00 2.45
5375 5787 7.264221 TCCATCATATAACAAATGTTTGGCAC 58.736 34.615 3.85 0.00 42.34 5.01
5381 5793 8.655092 CATATAACAAATGTTTGGCACGAAAAT 58.345 29.630 3.85 0.00 42.34 1.82
5388 5800 2.933260 GTTTGGCACGAAAATGGTTTGT 59.067 40.909 0.00 0.00 0.00 2.83
5400 5812 5.738619 AAATGGTTTGTATGTTCCCCTTC 57.261 39.130 0.00 0.00 0.00 3.46
5417 5829 6.843752 TCCCCTTCTATGTGTTTCTTTTACA 58.156 36.000 0.00 0.00 0.00 2.41
5418 5830 7.291566 TCCCCTTCTATGTGTTTCTTTTACAA 58.708 34.615 0.00 0.00 0.00 2.41
5419 5831 7.947890 TCCCCTTCTATGTGTTTCTTTTACAAT 59.052 33.333 0.00 0.00 0.00 2.71
5420 5832 8.585018 CCCCTTCTATGTGTTTCTTTTACAATT 58.415 33.333 0.00 0.00 0.00 2.32
5456 5868 5.123344 AGGATAAGCGTAAATTGTTCACACC 59.877 40.000 0.00 0.00 0.00 4.16
5468 5880 6.773976 ATTGTTCACACCAATAACATAGGG 57.226 37.500 0.00 0.00 33.44 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.912025 AAGCACAACCCTTGGCGG 60.912 61.111 0.00 0.00 33.78 6.13
65 66 1.733402 TTGAAGCACAACCCTTGGCG 61.733 55.000 0.00 0.00 33.18 5.69
66 67 2.123409 TTGAAGCACAACCCTTGGC 58.877 52.632 0.00 0.00 33.18 4.52
74 75 0.808060 TCGTCGCAGTTGAAGCACAA 60.808 50.000 0.00 0.00 36.02 3.33
75 76 1.215014 CTCGTCGCAGTTGAAGCACA 61.215 55.000 0.00 0.00 0.00 4.57
76 77 1.488957 CTCGTCGCAGTTGAAGCAC 59.511 57.895 0.00 0.00 0.00 4.40
77 78 2.310233 GCTCGTCGCAGTTGAAGCA 61.310 57.895 0.00 0.00 38.92 3.91
78 79 2.472049 GCTCGTCGCAGTTGAAGC 59.528 61.111 0.00 0.00 38.92 3.86
79 80 2.383527 GGGCTCGTCGCAGTTGAAG 61.384 63.158 2.27 0.00 41.67 3.02
80 81 1.529152 TAGGGCTCGTCGCAGTTGAA 61.529 55.000 2.27 0.00 41.67 2.69
81 82 1.974875 TAGGGCTCGTCGCAGTTGA 60.975 57.895 2.27 0.00 41.67 3.18
82 83 1.805945 GTAGGGCTCGTCGCAGTTG 60.806 63.158 2.27 0.00 41.67 3.16
83 84 2.273179 TGTAGGGCTCGTCGCAGTT 61.273 57.895 2.27 0.00 41.67 3.16
84 85 2.675423 TGTAGGGCTCGTCGCAGT 60.675 61.111 2.27 0.00 41.67 4.40
85 86 2.202623 GTGTAGGGCTCGTCGCAG 60.203 66.667 2.27 0.00 41.67 5.18
86 87 4.111016 CGTGTAGGGCTCGTCGCA 62.111 66.667 2.27 0.00 41.67 5.10
88 89 4.849329 GGCGTGTAGGGCTCGTCG 62.849 72.222 0.00 0.00 36.57 5.12
89 90 4.509737 GGGCGTGTAGGGCTCGTC 62.510 72.222 0.00 0.00 37.89 4.20
92 93 4.509737 GTCGGGCGTGTAGGGCTC 62.510 72.222 0.00 0.00 0.00 4.70
95 96 4.446413 GTGGTCGGGCGTGTAGGG 62.446 72.222 0.00 0.00 0.00 3.53
96 97 4.789075 CGTGGTCGGGCGTGTAGG 62.789 72.222 0.00 0.00 0.00 3.18
97 98 3.958822 GACGTGGTCGGGCGTGTAG 62.959 68.421 0.00 0.00 41.70 2.74
98 99 4.041917 GACGTGGTCGGGCGTGTA 62.042 66.667 0.00 0.00 41.70 2.90
113 114 4.500116 GAGGAGTCGCGGGCAGAC 62.500 72.222 6.13 0.00 38.81 3.51
114 115 3.339738 TAGAGGAGTCGCGGGCAGA 62.340 63.158 6.13 0.00 0.00 4.26
115 116 2.829003 TAGAGGAGTCGCGGGCAG 60.829 66.667 6.13 0.00 0.00 4.85
116 117 3.138798 GTAGAGGAGTCGCGGGCA 61.139 66.667 6.13 0.00 0.00 5.36
117 118 3.902086 GGTAGAGGAGTCGCGGGC 61.902 72.222 6.13 0.00 0.00 6.13
118 119 2.124236 AGGTAGAGGAGTCGCGGG 60.124 66.667 6.13 0.00 0.00 6.13
119 120 2.482333 CCAGGTAGAGGAGTCGCGG 61.482 68.421 6.13 0.00 0.00 6.46
120 121 1.440938 CTCCAGGTAGAGGAGTCGCG 61.441 65.000 0.00 0.00 46.07 5.87
121 122 2.410466 CTCCAGGTAGAGGAGTCGC 58.590 63.158 0.00 0.00 46.07 5.19
133 134 0.976641 TGTAGTCTGCAACCTCCAGG 59.023 55.000 0.00 0.00 42.17 4.45
134 135 3.005554 CAATGTAGTCTGCAACCTCCAG 58.994 50.000 0.00 0.00 0.00 3.86
135 136 2.637382 TCAATGTAGTCTGCAACCTCCA 59.363 45.455 0.00 0.00 0.00 3.86
136 137 3.265791 CTCAATGTAGTCTGCAACCTCC 58.734 50.000 0.00 0.00 0.00 4.30
137 138 3.055819 TCCTCAATGTAGTCTGCAACCTC 60.056 47.826 0.00 0.00 0.00 3.85
138 139 2.906389 TCCTCAATGTAGTCTGCAACCT 59.094 45.455 0.00 0.00 0.00 3.50
139 140 3.265791 CTCCTCAATGTAGTCTGCAACC 58.734 50.000 0.00 0.00 0.00 3.77
140 141 3.055819 TCCTCCTCAATGTAGTCTGCAAC 60.056 47.826 0.00 0.00 0.00 4.17
141 142 3.055819 GTCCTCCTCAATGTAGTCTGCAA 60.056 47.826 0.00 0.00 0.00 4.08
142 143 2.497675 GTCCTCCTCAATGTAGTCTGCA 59.502 50.000 0.00 0.00 0.00 4.41
143 144 2.480416 CGTCCTCCTCAATGTAGTCTGC 60.480 54.545 0.00 0.00 0.00 4.26
144 145 2.480416 GCGTCCTCCTCAATGTAGTCTG 60.480 54.545 0.00 0.00 0.00 3.51
145 146 1.751924 GCGTCCTCCTCAATGTAGTCT 59.248 52.381 0.00 0.00 0.00 3.24
146 147 1.202428 GGCGTCCTCCTCAATGTAGTC 60.202 57.143 0.00 0.00 0.00 2.59
147 148 0.824759 GGCGTCCTCCTCAATGTAGT 59.175 55.000 0.00 0.00 0.00 2.73
148 149 0.824109 TGGCGTCCTCCTCAATGTAG 59.176 55.000 0.00 0.00 0.00 2.74
149 150 1.412710 GATGGCGTCCTCCTCAATGTA 59.587 52.381 0.00 0.00 0.00 2.29
150 151 0.179000 GATGGCGTCCTCCTCAATGT 59.821 55.000 0.00 0.00 0.00 2.71
151 152 0.877649 CGATGGCGTCCTCCTCAATG 60.878 60.000 0.14 0.00 0.00 2.82
152 153 1.443407 CGATGGCGTCCTCCTCAAT 59.557 57.895 0.14 0.00 0.00 2.57
153 154 2.892640 CGATGGCGTCCTCCTCAA 59.107 61.111 0.14 0.00 0.00 3.02
154 155 3.838271 GCGATGGCGTCCTCCTCA 61.838 66.667 0.14 0.00 40.36 3.86
155 156 4.593864 GGCGATGGCGTCCTCCTC 62.594 72.222 0.14 0.00 41.24 3.71
187 188 4.379243 ACCTTCGCGACAGCTGGG 62.379 66.667 19.93 10.74 42.32 4.45
188 189 3.114616 CACCTTCGCGACAGCTGG 61.115 66.667 19.93 9.00 42.32 4.85
189 190 1.498865 AAACACCTTCGCGACAGCTG 61.499 55.000 9.15 13.48 42.32 4.24
190 191 1.227556 AAACACCTTCGCGACAGCT 60.228 52.632 9.15 0.00 42.32 4.24
191 192 1.082756 CAAACACCTTCGCGACAGC 60.083 57.895 9.15 0.00 40.74 4.40
192 193 1.136252 CATCAAACACCTTCGCGACAG 60.136 52.381 9.15 9.85 0.00 3.51
193 194 0.865111 CATCAAACACCTTCGCGACA 59.135 50.000 9.15 0.00 0.00 4.35
194 195 0.452784 GCATCAAACACCTTCGCGAC 60.453 55.000 9.15 0.00 0.00 5.19
195 196 0.602638 AGCATCAAACACCTTCGCGA 60.603 50.000 3.71 3.71 0.00 5.87
196 197 1.061131 CTAGCATCAAACACCTTCGCG 59.939 52.381 0.00 0.00 0.00 5.87
197 198 2.076863 ACTAGCATCAAACACCTTCGC 58.923 47.619 0.00 0.00 0.00 4.70
198 199 3.745975 TCAACTAGCATCAAACACCTTCG 59.254 43.478 0.00 0.00 0.00 3.79
199 200 5.412594 TGATCAACTAGCATCAAACACCTTC 59.587 40.000 0.00 0.00 0.00 3.46
200 201 5.182001 GTGATCAACTAGCATCAAACACCTT 59.818 40.000 0.00 0.00 30.76 3.50
201 202 4.697352 GTGATCAACTAGCATCAAACACCT 59.303 41.667 0.00 0.00 30.76 4.00
202 203 4.142600 GGTGATCAACTAGCATCAAACACC 60.143 45.833 2.64 0.00 37.49 4.16
203 204 4.697352 AGGTGATCAACTAGCATCAAACAC 59.303 41.667 12.79 0.00 30.76 3.32
204 205 4.910195 AGGTGATCAACTAGCATCAAACA 58.090 39.130 12.79 0.00 30.76 2.83
205 206 4.033358 CGAGGTGATCAACTAGCATCAAAC 59.967 45.833 14.70 0.00 30.76 2.93
206 207 4.081697 TCGAGGTGATCAACTAGCATCAAA 60.082 41.667 14.70 0.00 30.76 2.69
207 208 3.447229 TCGAGGTGATCAACTAGCATCAA 59.553 43.478 14.70 0.00 30.76 2.57
208 209 3.023832 TCGAGGTGATCAACTAGCATCA 58.976 45.455 14.70 0.00 0.00 3.07
209 210 3.551863 CCTCGAGGTGATCAACTAGCATC 60.552 52.174 24.04 0.00 0.00 3.91
210 211 2.363680 CCTCGAGGTGATCAACTAGCAT 59.636 50.000 24.04 0.00 0.00 3.79
211 212 1.751351 CCTCGAGGTGATCAACTAGCA 59.249 52.381 24.04 3.26 0.00 3.49
212 213 2.025155 TCCTCGAGGTGATCAACTAGC 58.975 52.381 30.17 0.69 36.34 3.42
213 214 3.283751 ACTCCTCGAGGTGATCAACTAG 58.716 50.000 34.06 21.50 33.35 2.57
214 215 3.367646 ACTCCTCGAGGTGATCAACTA 57.632 47.619 34.06 11.56 33.35 2.24
215 216 2.223803 ACTCCTCGAGGTGATCAACT 57.776 50.000 34.06 14.62 33.35 3.16
216 217 2.231478 TGAACTCCTCGAGGTGATCAAC 59.769 50.000 31.98 20.43 37.48 3.18
217 218 2.525368 TGAACTCCTCGAGGTGATCAA 58.475 47.619 31.98 20.59 37.48 2.57
218 219 2.215942 TGAACTCCTCGAGGTGATCA 57.784 50.000 31.03 31.03 37.89 2.92
219 220 2.231478 TGTTGAACTCCTCGAGGTGATC 59.769 50.000 34.06 30.57 33.35 2.92
220 221 2.248248 TGTTGAACTCCTCGAGGTGAT 58.752 47.619 34.06 25.26 33.35 3.06
221 222 1.699730 TGTTGAACTCCTCGAGGTGA 58.300 50.000 34.06 15.87 33.35 4.02
222 223 2.408050 CTTGTTGAACTCCTCGAGGTG 58.592 52.381 30.17 28.86 33.35 4.00
223 224 1.270358 GCTTGTTGAACTCCTCGAGGT 60.270 52.381 30.17 12.40 33.35 3.85
224 225 1.433534 GCTTGTTGAACTCCTCGAGG 58.566 55.000 26.32 26.32 33.35 4.63
225 226 1.063806 CGCTTGTTGAACTCCTCGAG 58.936 55.000 5.13 5.13 35.52 4.04
226 227 0.944311 GCGCTTGTTGAACTCCTCGA 60.944 55.000 0.00 0.00 0.00 4.04
227 228 0.946221 AGCGCTTGTTGAACTCCTCG 60.946 55.000 2.64 0.00 0.00 4.63
228 229 1.195674 GAAGCGCTTGTTGAACTCCTC 59.804 52.381 30.47 4.19 0.00 3.71
229 230 1.230324 GAAGCGCTTGTTGAACTCCT 58.770 50.000 30.47 0.00 0.00 3.69
230 231 0.238553 GGAAGCGCTTGTTGAACTCC 59.761 55.000 30.47 16.43 0.00 3.85
231 232 0.238553 GGGAAGCGCTTGTTGAACTC 59.761 55.000 30.47 10.45 0.00 3.01
232 233 1.172812 GGGGAAGCGCTTGTTGAACT 61.173 55.000 30.47 0.00 0.00 3.01
233 234 1.285950 GGGGAAGCGCTTGTTGAAC 59.714 57.895 30.47 11.84 0.00 3.18
234 235 1.152860 TGGGGAAGCGCTTGTTGAA 60.153 52.632 30.47 6.19 0.00 2.69
235 236 1.896660 GTGGGGAAGCGCTTGTTGA 60.897 57.895 30.47 5.86 0.00 3.18
236 237 2.644992 GTGGGGAAGCGCTTGTTG 59.355 61.111 30.47 0.00 0.00 3.33
237 238 2.597510 GGTGGGGAAGCGCTTGTT 60.598 61.111 30.47 2.56 0.00 2.83
238 239 1.774894 TAAGGTGGGGAAGCGCTTGT 61.775 55.000 30.47 3.56 0.00 3.16
239 240 1.002624 TAAGGTGGGGAAGCGCTTG 60.003 57.895 30.47 0.00 0.00 4.01
240 241 1.002502 GTAAGGTGGGGAAGCGCTT 60.003 57.895 25.35 25.35 0.00 4.68
241 242 2.185310 CTGTAAGGTGGGGAAGCGCT 62.185 60.000 2.64 2.64 0.00 5.92
242 243 1.745489 CTGTAAGGTGGGGAAGCGC 60.745 63.158 0.00 0.00 0.00 5.92
243 244 1.745489 GCTGTAAGGTGGGGAAGCG 60.745 63.158 0.00 0.00 0.00 4.68
244 245 4.320910 GCTGTAAGGTGGGGAAGC 57.679 61.111 0.00 0.00 0.00 3.86
253 254 2.478989 TCGTCCTCGAGCTGTAAGG 58.521 57.895 6.99 0.00 41.35 2.69
262 263 1.668919 GCACAAACATCTCGTCCTCGA 60.669 52.381 0.00 0.00 44.12 4.04
263 264 0.716108 GCACAAACATCTCGTCCTCG 59.284 55.000 0.00 0.00 38.55 4.63
264 265 1.728971 CTGCACAAACATCTCGTCCTC 59.271 52.381 0.00 0.00 0.00 3.71
265 266 1.609061 CCTGCACAAACATCTCGTCCT 60.609 52.381 0.00 0.00 0.00 3.85
266 267 0.798776 CCTGCACAAACATCTCGTCC 59.201 55.000 0.00 0.00 0.00 4.79
267 268 0.166814 GCCTGCACAAACATCTCGTC 59.833 55.000 0.00 0.00 0.00 4.20
268 269 1.568612 CGCCTGCACAAACATCTCGT 61.569 55.000 0.00 0.00 0.00 4.18
269 270 1.133253 CGCCTGCACAAACATCTCG 59.867 57.895 0.00 0.00 0.00 4.04
270 271 1.503542 CCGCCTGCACAAACATCTC 59.496 57.895 0.00 0.00 0.00 2.75
271 272 1.973281 CCCGCCTGCACAAACATCT 60.973 57.895 0.00 0.00 0.00 2.90
272 273 2.568090 CCCGCCTGCACAAACATC 59.432 61.111 0.00 0.00 0.00 3.06
273 274 2.990967 CCCCGCCTGCACAAACAT 60.991 61.111 0.00 0.00 0.00 2.71
274 275 4.196778 TCCCCGCCTGCACAAACA 62.197 61.111 0.00 0.00 0.00 2.83
275 276 3.365265 CTCCCCGCCTGCACAAAC 61.365 66.667 0.00 0.00 0.00 2.93
276 277 3.126703 TTCTCCCCGCCTGCACAAA 62.127 57.895 0.00 0.00 0.00 2.83
277 278 3.551496 CTTCTCCCCGCCTGCACAA 62.551 63.158 0.00 0.00 0.00 3.33
278 279 4.020617 CTTCTCCCCGCCTGCACA 62.021 66.667 0.00 0.00 0.00 4.57
279 280 4.021925 ACTTCTCCCCGCCTGCAC 62.022 66.667 0.00 0.00 0.00 4.57
280 281 4.020617 CACTTCTCCCCGCCTGCA 62.021 66.667 0.00 0.00 0.00 4.41
281 282 2.180159 TAACACTTCTCCCCGCCTGC 62.180 60.000 0.00 0.00 0.00 4.85
282 283 0.541863 ATAACACTTCTCCCCGCCTG 59.458 55.000 0.00 0.00 0.00 4.85
283 284 0.541863 CATAACACTTCTCCCCGCCT 59.458 55.000 0.00 0.00 0.00 5.52
284 285 0.539986 TCATAACACTTCTCCCCGCC 59.460 55.000 0.00 0.00 0.00 6.13
285 286 1.653151 GTCATAACACTTCTCCCCGC 58.347 55.000 0.00 0.00 0.00 6.13
286 287 1.470979 CGGTCATAACACTTCTCCCCG 60.471 57.143 0.00 0.00 0.00 5.73
287 288 1.134491 CCGGTCATAACACTTCTCCCC 60.134 57.143 0.00 0.00 0.00 4.81
288 289 1.742750 GCCGGTCATAACACTTCTCCC 60.743 57.143 1.90 0.00 0.00 4.30
289 290 1.066430 TGCCGGTCATAACACTTCTCC 60.066 52.381 1.90 0.00 0.00 3.71
290 291 2.380084 TGCCGGTCATAACACTTCTC 57.620 50.000 1.90 0.00 0.00 2.87
291 292 4.689612 ATATGCCGGTCATAACACTTCT 57.310 40.909 18.34 2.67 40.73 2.85
292 293 5.408604 CCTAATATGCCGGTCATAACACTTC 59.591 44.000 18.34 0.00 40.73 3.01
293 294 5.305585 CCTAATATGCCGGTCATAACACTT 58.694 41.667 18.34 12.32 40.73 3.16
294 295 4.262894 CCCTAATATGCCGGTCATAACACT 60.263 45.833 18.34 9.16 40.73 3.55
295 296 4.000988 CCCTAATATGCCGGTCATAACAC 58.999 47.826 18.34 0.00 40.73 3.32
296 297 3.008594 CCCCTAATATGCCGGTCATAACA 59.991 47.826 18.34 10.64 40.73 2.41
297 298 3.606687 CCCCTAATATGCCGGTCATAAC 58.393 50.000 18.34 0.00 40.73 1.89
298 299 2.026636 GCCCCTAATATGCCGGTCATAA 60.027 50.000 18.34 6.45 40.73 1.90
299 300 1.557832 GCCCCTAATATGCCGGTCATA 59.442 52.381 17.22 17.22 41.52 2.15
300 301 0.328258 GCCCCTAATATGCCGGTCAT 59.672 55.000 14.43 14.43 39.17 3.06
301 302 0.766674 AGCCCCTAATATGCCGGTCA 60.767 55.000 1.90 1.38 0.00 4.02
302 303 0.400594 AAGCCCCTAATATGCCGGTC 59.599 55.000 1.90 0.00 0.00 4.79
303 304 1.628846 CTAAGCCCCTAATATGCCGGT 59.371 52.381 1.90 0.00 0.00 5.28
304 305 1.679032 GCTAAGCCCCTAATATGCCGG 60.679 57.143 0.00 0.00 0.00 6.13
305 306 1.679032 GGCTAAGCCCCTAATATGCCG 60.679 57.143 0.00 0.00 44.06 5.69
306 307 2.130272 GGCTAAGCCCCTAATATGCC 57.870 55.000 0.00 0.00 44.06 4.40
331 332 2.215942 AGATAACTTGGGCCACAACC 57.784 50.000 5.23 0.00 34.76 3.77
332 333 4.035208 CGATAAGATAACTTGGGCCACAAC 59.965 45.833 5.23 0.00 37.53 3.32
333 334 4.196193 CGATAAGATAACTTGGGCCACAA 58.804 43.478 5.23 5.72 37.53 3.33
334 335 3.199071 ACGATAAGATAACTTGGGCCACA 59.801 43.478 5.23 0.00 37.53 4.17
335 336 3.805207 ACGATAAGATAACTTGGGCCAC 58.195 45.455 5.23 0.00 37.53 5.01
336 337 4.497291 AACGATAAGATAACTTGGGCCA 57.503 40.909 0.00 0.00 37.53 5.36
337 338 7.333672 CCTAATAACGATAAGATAACTTGGGCC 59.666 40.741 0.00 0.00 37.53 5.80
338 339 7.333672 CCCTAATAACGATAAGATAACTTGGGC 59.666 40.741 0.00 0.00 37.53 5.36
339 340 7.822822 CCCCTAATAACGATAAGATAACTTGGG 59.177 40.741 0.00 0.00 37.53 4.12
340 341 7.333672 GCCCCTAATAACGATAAGATAACTTGG 59.666 40.741 0.00 0.00 37.53 3.61
341 342 8.095169 AGCCCCTAATAACGATAAGATAACTTG 58.905 37.037 0.00 0.00 37.53 3.16
342 343 8.203681 AGCCCCTAATAACGATAAGATAACTT 57.796 34.615 0.00 0.00 39.81 2.66
343 344 7.793948 AGCCCCTAATAACGATAAGATAACT 57.206 36.000 0.00 0.00 0.00 2.24
344 345 9.583765 CTAAGCCCCTAATAACGATAAGATAAC 57.416 37.037 0.00 0.00 0.00 1.89
345 346 8.255905 GCTAAGCCCCTAATAACGATAAGATAA 58.744 37.037 0.00 0.00 0.00 1.75
346 347 7.147776 GGCTAAGCCCCTAATAACGATAAGATA 60.148 40.741 0.00 0.00 44.06 1.98
347 348 6.351966 GGCTAAGCCCCTAATAACGATAAGAT 60.352 42.308 0.00 0.00 44.06 2.40
348 349 5.046807 GGCTAAGCCCCTAATAACGATAAGA 60.047 44.000 0.00 0.00 44.06 2.10
349 350 5.176592 GGCTAAGCCCCTAATAACGATAAG 58.823 45.833 0.00 0.00 44.06 1.73
350 351 5.156608 GGCTAAGCCCCTAATAACGATAA 57.843 43.478 0.00 0.00 44.06 1.75
351 352 4.813750 GGCTAAGCCCCTAATAACGATA 57.186 45.455 0.00 0.00 44.06 2.92
352 353 3.697619 GGCTAAGCCCCTAATAACGAT 57.302 47.619 0.00 0.00 44.06 3.73
365 366 4.938226 AGCGATAAGATAATTGGGCTAAGC 59.062 41.667 0.00 0.00 0.00 3.09
366 367 8.723942 AATAGCGATAAGATAATTGGGCTAAG 57.276 34.615 0.00 0.00 35.63 2.18
367 368 9.817809 CTAATAGCGATAAGATAATTGGGCTAA 57.182 33.333 0.00 0.00 35.63 3.09
368 369 8.421784 CCTAATAGCGATAAGATAATTGGGCTA 58.578 37.037 0.00 0.00 36.34 3.93
369 370 7.125811 TCCTAATAGCGATAAGATAATTGGGCT 59.874 37.037 0.00 0.00 0.00 5.19
370 371 7.272978 TCCTAATAGCGATAAGATAATTGGGC 58.727 38.462 0.00 0.00 0.00 5.36
371 372 9.482627 GATCCTAATAGCGATAAGATAATTGGG 57.517 37.037 0.00 0.00 0.00 4.12
372 373 9.186323 CGATCCTAATAGCGATAAGATAATTGG 57.814 37.037 0.00 0.00 0.00 3.16
373 374 9.737427 ACGATCCTAATAGCGATAAGATAATTG 57.263 33.333 0.00 0.00 0.00 2.32
376 377 9.569167 CAAACGATCCTAATAGCGATAAGATAA 57.431 33.333 0.00 0.00 0.00 1.75
377 378 7.701078 GCAAACGATCCTAATAGCGATAAGATA 59.299 37.037 0.00 0.00 0.00 1.98
378 379 6.531948 GCAAACGATCCTAATAGCGATAAGAT 59.468 38.462 0.00 0.00 0.00 2.40
379 380 5.862323 GCAAACGATCCTAATAGCGATAAGA 59.138 40.000 0.00 0.00 0.00 2.10
380 381 5.864474 AGCAAACGATCCTAATAGCGATAAG 59.136 40.000 0.00 0.00 0.00 1.73
381 382 5.779922 AGCAAACGATCCTAATAGCGATAA 58.220 37.500 0.00 0.00 0.00 1.75
382 383 5.386958 AGCAAACGATCCTAATAGCGATA 57.613 39.130 0.00 0.00 0.00 2.92
383 384 4.258702 AGCAAACGATCCTAATAGCGAT 57.741 40.909 0.00 0.00 0.00 4.58
384 385 3.728076 AGCAAACGATCCTAATAGCGA 57.272 42.857 0.00 0.00 0.00 4.93
385 386 4.386049 CCTAAGCAAACGATCCTAATAGCG 59.614 45.833 0.00 0.00 0.00 4.26
386 387 5.539048 TCCTAAGCAAACGATCCTAATAGC 58.461 41.667 0.00 0.00 0.00 2.97
387 388 6.750148 ACTCCTAAGCAAACGATCCTAATAG 58.250 40.000 0.00 0.00 0.00 1.73
388 389 6.322969 TGACTCCTAAGCAAACGATCCTAATA 59.677 38.462 0.00 0.00 0.00 0.98
389 390 5.128827 TGACTCCTAAGCAAACGATCCTAAT 59.871 40.000 0.00 0.00 0.00 1.73
390 391 4.464951 TGACTCCTAAGCAAACGATCCTAA 59.535 41.667 0.00 0.00 0.00 2.69
391 392 4.021229 TGACTCCTAAGCAAACGATCCTA 58.979 43.478 0.00 0.00 0.00 2.94
392 393 2.832129 TGACTCCTAAGCAAACGATCCT 59.168 45.455 0.00 0.00 0.00 3.24
393 394 3.247006 TGACTCCTAAGCAAACGATCC 57.753 47.619 0.00 0.00 0.00 3.36
394 395 4.246458 ACTTGACTCCTAAGCAAACGATC 58.754 43.478 0.00 0.00 0.00 3.69
395 396 4.273148 ACTTGACTCCTAAGCAAACGAT 57.727 40.909 0.00 0.00 0.00 3.73
396 397 3.746045 ACTTGACTCCTAAGCAAACGA 57.254 42.857 0.00 0.00 0.00 3.85
397 398 5.333875 GGTTTACTTGACTCCTAAGCAAACG 60.334 44.000 0.00 0.00 40.10 3.60
398 399 5.763698 AGGTTTACTTGACTCCTAAGCAAAC 59.236 40.000 0.00 0.00 39.20 2.93
399 400 5.937111 AGGTTTACTTGACTCCTAAGCAAA 58.063 37.500 0.00 0.00 0.00 3.68
400 401 5.307196 AGAGGTTTACTTGACTCCTAAGCAA 59.693 40.000 0.00 0.00 0.00 3.91
401 402 4.838986 AGAGGTTTACTTGACTCCTAAGCA 59.161 41.667 0.00 0.00 0.00 3.91
402 403 5.186215 AGAGAGGTTTACTTGACTCCTAAGC 59.814 44.000 0.00 0.00 0.00 3.09
403 404 6.844097 AGAGAGGTTTACTTGACTCCTAAG 57.156 41.667 0.00 0.00 0.00 2.18
431 432 8.971032 ATTAGATTGATACATCTCCTCTCCTT 57.029 34.615 0.00 0.00 0.00 3.36
432 433 8.176105 TGATTAGATTGATACATCTCCTCTCCT 58.824 37.037 0.00 0.00 0.00 3.69
433 434 8.359875 TGATTAGATTGATACATCTCCTCTCC 57.640 38.462 0.00 0.00 0.00 3.71
434 435 9.859427 CTTGATTAGATTGATACATCTCCTCTC 57.141 37.037 0.00 0.00 0.00 3.20
435 436 8.313292 GCTTGATTAGATTGATACATCTCCTCT 58.687 37.037 0.00 0.00 0.00 3.69
436 437 8.093307 TGCTTGATTAGATTGATACATCTCCTC 58.907 37.037 0.00 0.00 0.00 3.71
437 438 7.971201 TGCTTGATTAGATTGATACATCTCCT 58.029 34.615 0.00 0.00 0.00 3.69
438 439 8.613060 TTGCTTGATTAGATTGATACATCTCC 57.387 34.615 0.00 0.00 0.00 3.71
439 440 9.486497 TCTTGCTTGATTAGATTGATACATCTC 57.514 33.333 0.00 0.00 0.00 2.75
440 441 9.842775 TTCTTGCTTGATTAGATTGATACATCT 57.157 29.630 0.00 0.00 0.00 2.90
450 451 9.911788 TCCTTCTTAATTCTTGCTTGATTAGAT 57.088 29.630 0.00 0.00 0.00 1.98
451 452 9.739276 TTCCTTCTTAATTCTTGCTTGATTAGA 57.261 29.630 0.00 0.00 0.00 2.10
454 455 9.866798 GATTTCCTTCTTAATTCTTGCTTGATT 57.133 29.630 0.00 0.00 0.00 2.57
455 456 8.473219 GGATTTCCTTCTTAATTCTTGCTTGAT 58.527 33.333 0.00 0.00 0.00 2.57
456 457 7.093771 GGGATTTCCTTCTTAATTCTTGCTTGA 60.094 37.037 0.00 0.00 35.95 3.02
457 458 7.038048 GGGATTTCCTTCTTAATTCTTGCTTG 58.962 38.462 0.00 0.00 35.95 4.01
458 459 6.956435 AGGGATTTCCTTCTTAATTCTTGCTT 59.044 34.615 0.00 0.00 45.47 3.91
459 460 6.497640 AGGGATTTCCTTCTTAATTCTTGCT 58.502 36.000 0.00 0.00 45.47 3.91
460 461 6.782082 AGGGATTTCCTTCTTAATTCTTGC 57.218 37.500 0.00 0.00 45.47 4.01
475 476 1.686428 GGGCAAGAGGGAAGGGATTTC 60.686 57.143 0.00 0.00 34.93 2.17
476 477 0.336392 GGGCAAGAGGGAAGGGATTT 59.664 55.000 0.00 0.00 0.00 2.17
477 478 1.926426 CGGGCAAGAGGGAAGGGATT 61.926 60.000 0.00 0.00 0.00 3.01
478 479 2.378634 CGGGCAAGAGGGAAGGGAT 61.379 63.158 0.00 0.00 0.00 3.85
479 480 3.009115 CGGGCAAGAGGGAAGGGA 61.009 66.667 0.00 0.00 0.00 4.20
480 481 4.115199 CCGGGCAAGAGGGAAGGG 62.115 72.222 0.00 0.00 0.00 3.95
481 482 4.803908 GCCGGGCAAGAGGGAAGG 62.804 72.222 15.62 0.00 0.00 3.46
482 483 3.721706 AGCCGGGCAAGAGGGAAG 61.722 66.667 23.09 0.00 0.00 3.46
483 484 4.033776 CAGCCGGGCAAGAGGGAA 62.034 66.667 23.09 0.00 0.00 3.97
494 495 2.339712 CTTTTTGCCCACAGCCGG 59.660 61.111 0.00 0.00 42.71 6.13
495 496 2.339712 CCTTTTTGCCCACAGCCG 59.660 61.111 0.00 0.00 42.71 5.52
496 497 2.031012 GCCTTTTTGCCCACAGCC 59.969 61.111 0.00 0.00 42.71 4.85
497 498 2.031012 GGCCTTTTTGCCCACAGC 59.969 61.111 0.00 0.00 46.11 4.40
525 526 3.776347 TAGAGGAGGGCGCGAGAGG 62.776 68.421 12.10 0.00 0.00 3.69
526 527 2.203224 TAGAGGAGGGCGCGAGAG 60.203 66.667 12.10 0.00 0.00 3.20
527 528 2.203224 CTAGAGGAGGGCGCGAGA 60.203 66.667 12.10 0.00 0.00 4.04
528 529 3.972276 GCTAGAGGAGGGCGCGAG 61.972 72.222 12.10 0.00 0.00 5.03
529 530 4.815108 TGCTAGAGGAGGGCGCGA 62.815 66.667 12.10 0.00 0.00 5.87
530 531 4.277593 CTGCTAGAGGAGGGCGCG 62.278 72.222 0.00 0.00 0.00 6.86
531 532 4.600576 GCTGCTAGAGGAGGGCGC 62.601 72.222 0.00 0.00 33.79 6.53
532 533 3.922640 GGCTGCTAGAGGAGGGCG 61.923 72.222 0.00 0.00 33.79 6.13
533 534 2.765807 TGGCTGCTAGAGGAGGGC 60.766 66.667 0.00 0.00 33.79 5.19
534 535 1.053264 ATGTGGCTGCTAGAGGAGGG 61.053 60.000 0.00 0.00 33.79 4.30
535 536 1.709578 TATGTGGCTGCTAGAGGAGG 58.290 55.000 0.00 0.00 33.79 4.30
536 537 2.432146 TGTTATGTGGCTGCTAGAGGAG 59.568 50.000 0.00 0.00 36.50 3.69
537 538 2.466846 TGTTATGTGGCTGCTAGAGGA 58.533 47.619 0.00 0.00 0.00 3.71
538 539 2.988010 TGTTATGTGGCTGCTAGAGG 57.012 50.000 0.00 0.00 0.00 3.69
539 540 4.128925 TCTTGTTATGTGGCTGCTAGAG 57.871 45.455 0.00 0.00 0.00 2.43
540 541 4.760530 ATCTTGTTATGTGGCTGCTAGA 57.239 40.909 0.00 0.00 0.00 2.43
541 542 4.752101 GGTATCTTGTTATGTGGCTGCTAG 59.248 45.833 0.00 0.00 0.00 3.42
542 543 4.163268 TGGTATCTTGTTATGTGGCTGCTA 59.837 41.667 0.00 0.00 0.00 3.49
543 544 3.054434 TGGTATCTTGTTATGTGGCTGCT 60.054 43.478 0.00 0.00 0.00 4.24
544 545 3.278574 TGGTATCTTGTTATGTGGCTGC 58.721 45.455 0.00 0.00 0.00 5.25
545 546 7.566760 TTTATGGTATCTTGTTATGTGGCTG 57.433 36.000 0.00 0.00 0.00 4.85
546 547 8.632679 CATTTTATGGTATCTTGTTATGTGGCT 58.367 33.333 0.00 0.00 0.00 4.75
547 548 7.867403 CCATTTTATGGTATCTTGTTATGTGGC 59.133 37.037 0.00 0.00 45.54 5.01
577 578 3.504863 TCGAGTTAACATTGCGGTAGAC 58.495 45.455 8.61 0.00 0.00 2.59
615 616 0.338814 ATCCCCCTCCGTCTACAACT 59.661 55.000 0.00 0.00 0.00 3.16
631 632 5.721960 TGCCTAGTCATATCTTTCCCTATCC 59.278 44.000 0.00 0.00 0.00 2.59
632 633 6.859112 TGCCTAGTCATATCTTTCCCTATC 57.141 41.667 0.00 0.00 0.00 2.08
633 634 7.068839 CGTATGCCTAGTCATATCTTTCCCTAT 59.931 40.741 0.00 0.00 32.24 2.57
634 635 6.377429 CGTATGCCTAGTCATATCTTTCCCTA 59.623 42.308 0.00 0.00 32.24 3.53
635 636 5.186021 CGTATGCCTAGTCATATCTTTCCCT 59.814 44.000 0.00 0.00 32.24 4.20
636 637 5.411781 CGTATGCCTAGTCATATCTTTCCC 58.588 45.833 0.00 0.00 32.24 3.97
717 718 6.345298 CAGCCTGTTTCCCTTTTTCTTTTAA 58.655 36.000 0.00 0.00 0.00 1.52
718 719 5.683770 GCAGCCTGTTTCCCTTTTTCTTTTA 60.684 40.000 0.00 0.00 0.00 1.52
719 720 4.769688 CAGCCTGTTTCCCTTTTTCTTTT 58.230 39.130 0.00 0.00 0.00 2.27
720 721 3.432186 GCAGCCTGTTTCCCTTTTTCTTT 60.432 43.478 0.00 0.00 0.00 2.52
721 722 2.103094 GCAGCCTGTTTCCCTTTTTCTT 59.897 45.455 0.00 0.00 0.00 2.52
722 723 1.688735 GCAGCCTGTTTCCCTTTTTCT 59.311 47.619 0.00 0.00 0.00 2.52
723 724 1.688735 AGCAGCCTGTTTCCCTTTTTC 59.311 47.619 0.00 0.00 0.00 2.29
724 725 1.688735 GAGCAGCCTGTTTCCCTTTTT 59.311 47.619 0.00 0.00 0.00 1.94
725 726 1.332195 GAGCAGCCTGTTTCCCTTTT 58.668 50.000 0.00 0.00 0.00 2.27
726 727 0.185901 TGAGCAGCCTGTTTCCCTTT 59.814 50.000 0.00 0.00 0.00 3.11
727 728 0.251077 CTGAGCAGCCTGTTTCCCTT 60.251 55.000 0.00 0.00 0.00 3.95
728 729 1.377994 CTGAGCAGCCTGTTTCCCT 59.622 57.895 0.00 0.00 0.00 4.20
729 730 3.993535 CTGAGCAGCCTGTTTCCC 58.006 61.111 0.00 0.00 0.00 3.97
747 748 1.310933 CCCTTTGGCAGCTGCTACTG 61.311 60.000 35.82 23.87 41.70 2.74
748 749 1.001641 CCCTTTGGCAGCTGCTACT 60.002 57.895 35.82 0.00 41.70 2.57
804 805 6.014242 TGGATGACTATTCTTCAGTGTCTGTT 60.014 38.462 0.00 0.00 32.61 3.16
808 809 5.724328 TGTGGATGACTATTCTTCAGTGTC 58.276 41.667 0.00 0.00 0.00 3.67
841 842 1.267121 TCTTCGGAAGGGAGTTGAGG 58.733 55.000 17.19 0.00 0.00 3.86
1051 1065 1.896660 GAAGAAGGCACGGCACCAA 60.897 57.895 0.00 0.00 0.00 3.67
1463 1480 1.541588 GACTTTGCAGGTCACCAATCC 59.458 52.381 14.36 0.00 34.23 3.01
1531 1548 1.270625 TGTGAGGTTGCCTAAAGACGG 60.271 52.381 0.00 0.00 31.76 4.79
1885 1902 1.282382 GTGCCTAGTTCTGGGGGTAA 58.718 55.000 4.49 0.00 0.00 2.85
2113 2130 9.969001 TTGTACTAGCTTGGTTAAATTTCCTAT 57.031 29.630 0.00 0.00 0.00 2.57
2272 2290 3.012518 AGATTGACAGTAGTTGCATGCC 58.987 45.455 16.68 0.00 0.00 4.40
2702 2724 5.322754 TGAGTGTTAGCTCTACTAGGTTGT 58.677 41.667 0.00 0.00 37.13 3.32
2746 2769 4.785376 ACTGTAGATTTCTGGTGGAATCCT 59.215 41.667 0.00 0.00 33.53 3.24
2747 2770 5.104259 ACTGTAGATTTCTGGTGGAATCC 57.896 43.478 0.00 0.00 33.53 3.01
2974 3211 3.959535 CAGGCCTGCTAAATTTCCAAA 57.040 42.857 22.33 0.00 0.00 3.28
3121 3358 0.601558 AGGCTCAACATGCTTGCAAG 59.398 50.000 22.44 22.44 0.00 4.01
3285 3522 2.484264 CCCCTTTTTGTGAGAAGCTACG 59.516 50.000 0.00 0.00 0.00 3.51
3292 3532 5.843019 AGTATCTTCCCCTTTTTGTGAGA 57.157 39.130 0.00 0.00 0.00 3.27
3345 3585 1.001378 GCAGCAACAATGACGAAACCT 60.001 47.619 0.00 0.00 0.00 3.50
3530 3770 1.125633 GACTTTGCCGTATCCCCCTA 58.874 55.000 0.00 0.00 0.00 3.53
3534 3774 2.973694 TGTAGACTTTGCCGTATCCC 57.026 50.000 0.00 0.00 0.00 3.85
3588 3828 4.021456 TGTTCGGTCTGATGAAGCTTCTTA 60.021 41.667 26.09 8.50 0.00 2.10
3729 3969 5.674525 CTTCCCTGCTGAATGTAGTCATAA 58.325 41.667 0.00 0.00 33.49 1.90
4292 4662 6.413052 TGAGCAGAGCTAATTGATTCTCTTT 58.587 36.000 0.00 0.00 39.88 2.52
4352 4722 1.475751 CCTCATCGTTGGCCTTGCTAT 60.476 52.381 3.32 0.00 0.00 2.97
4353 4723 0.107703 CCTCATCGTTGGCCTTGCTA 60.108 55.000 3.32 0.00 0.00 3.49
4379 4749 1.608055 TGCTGGATGAGTGTTTGGTG 58.392 50.000 0.00 0.00 0.00 4.17
4434 4805 9.367444 CGTCTCTTATTTCCTGTAATGTAAGTT 57.633 33.333 0.00 0.00 0.00 2.66
4448 4819 9.964253 CATATATCAACATGCGTCTCTTATTTC 57.036 33.333 0.00 0.00 0.00 2.17
4451 4822 9.526713 GATCATATATCAACATGCGTCTCTTAT 57.473 33.333 0.00 0.00 0.00 1.73
4456 4827 6.041423 TGGATCATATATCAACATGCGTCT 57.959 37.500 0.00 0.00 0.00 4.18
4457 4828 6.369890 AGTTGGATCATATATCAACATGCGTC 59.630 38.462 14.17 0.00 41.14 5.19
4458 4829 6.233434 AGTTGGATCATATATCAACATGCGT 58.767 36.000 14.17 0.00 41.14 5.24
4459 4830 6.732531 AGTTGGATCATATATCAACATGCG 57.267 37.500 14.17 0.00 41.14 4.73
4555 4953 3.548745 TGACATGGCAGGATTACAGAG 57.451 47.619 5.99 0.00 0.00 3.35
4660 5060 0.038251 TGAGGCGACTGTAACAGCAG 60.038 55.000 0.00 0.00 44.43 4.24
4688 5088 2.412112 CTACTGCCGGTACTCGCC 59.588 66.667 1.90 0.00 37.59 5.54
4689 5089 2.278661 GCTACTGCCGGTACTCGC 60.279 66.667 1.90 0.00 37.59 5.03
4701 5101 2.496470 CCCCAAGTTCTAAGACGCTACT 59.504 50.000 0.00 0.00 0.00 2.57
4720 5120 0.468029 CCATGTCCCTTACCATGCCC 60.468 60.000 0.00 0.00 37.67 5.36
4736 5137 1.152902 CACGGATGTGCCATCCCAT 60.153 57.895 21.54 11.85 39.67 4.00
4748 5149 2.743183 GCTATGACCAAGCTTCACGGAT 60.743 50.000 8.24 0.00 37.01 4.18
4858 5263 3.689347 ACACTCTGGATATTTTGCTGCA 58.311 40.909 0.00 0.00 0.00 4.41
4901 5307 7.611467 TGAAGTATATGTTGTTGGAGCAGAAAT 59.389 33.333 0.00 0.00 0.00 2.17
4972 5378 2.551459 AGAGACTGCACACATTTCAAGC 59.449 45.455 0.00 0.00 0.00 4.01
4981 5387 1.396301 GCAAGCATAGAGACTGCACAC 59.604 52.381 0.00 0.00 42.15 3.82
5000 5406 6.702723 TGTGGGTATTACGTCTAAACATATGC 59.297 38.462 1.58 0.00 0.00 3.14
5004 5410 6.537301 CACATGTGGGTATTACGTCTAAACAT 59.463 38.462 18.51 0.00 0.00 2.71
5013 5419 3.857052 AGTGTCACATGTGGGTATTACG 58.143 45.455 25.16 0.00 0.00 3.18
5044 5450 2.948979 CAAGTACCCTTGCAGACAACAA 59.051 45.455 0.00 0.00 41.51 2.83
5094 5503 5.045213 TCAGGTTCATGGGAGCAATAGTAAA 60.045 40.000 0.00 0.00 0.00 2.01
5095 5504 4.473196 TCAGGTTCATGGGAGCAATAGTAA 59.527 41.667 0.00 0.00 0.00 2.24
5106 5515 0.613260 TTCGTCCTCAGGTTCATGGG 59.387 55.000 0.00 0.00 0.00 4.00
5140 5549 5.243730 TGACCGCTGATATCACATCAGATTA 59.756 40.000 16.45 0.00 46.25 1.75
5143 5552 2.958355 TGACCGCTGATATCACATCAGA 59.042 45.455 16.45 0.00 46.25 3.27
5148 5557 3.641031 CGTGACCGCTGATATCACA 57.359 52.632 0.00 0.00 42.37 3.58
5159 5568 1.424403 TACACAATGAAGCGTGACCG 58.576 50.000 0.00 0.00 36.91 4.79
5160 5569 3.002862 TGTTTACACAATGAAGCGTGACC 59.997 43.478 0.00 0.00 36.91 4.02
5165 5574 4.219033 GTTCCTGTTTACACAATGAAGCG 58.781 43.478 0.00 0.00 30.36 4.68
5170 5579 7.305935 CGTTCATTTGTTCCTGTTTACACAATG 60.306 37.037 0.00 0.00 30.36 2.82
5174 5583 5.575019 ACGTTCATTTGTTCCTGTTTACAC 58.425 37.500 0.00 0.00 0.00 2.90
5189 5598 1.803334 TCCGCTTGCTTACGTTCATT 58.197 45.000 0.00 0.00 0.00 2.57
5192 5601 1.641577 AGATCCGCTTGCTTACGTTC 58.358 50.000 0.00 0.00 0.00 3.95
5195 5604 1.067212 ACCTAGATCCGCTTGCTTACG 59.933 52.381 0.00 0.00 0.00 3.18
5203 5612 1.203063 TCCTATGCACCTAGATCCGCT 60.203 52.381 0.00 0.00 0.00 5.52
5205 5614 2.232452 CCTTCCTATGCACCTAGATCCG 59.768 54.545 0.00 0.00 0.00 4.18
5207 5616 3.511477 TCCCTTCCTATGCACCTAGATC 58.489 50.000 0.00 0.00 0.00 2.75
5209 5618 3.414759 TTCCCTTCCTATGCACCTAGA 57.585 47.619 0.00 0.00 0.00 2.43
5248 5657 6.643770 CCTACAACGCTCTGTAAGTTCTTTTA 59.356 38.462 0.00 0.00 31.51 1.52
5254 5663 3.319972 TGTCCTACAACGCTCTGTAAGTT 59.680 43.478 0.00 0.00 31.51 2.66
5260 5669 2.926200 CTGATTGTCCTACAACGCTCTG 59.074 50.000 0.00 0.00 41.40 3.35
5264 5673 2.271800 CCTCTGATTGTCCTACAACGC 58.728 52.381 0.00 0.00 41.40 4.84
5268 5677 4.361783 TGATTCCCTCTGATTGTCCTACA 58.638 43.478 0.00 0.00 0.00 2.74
5270 5679 4.141620 GCTTGATTCCCTCTGATTGTCCTA 60.142 45.833 0.00 0.00 0.00 2.94
5281 5690 8.686334 TCATACTTTAATTTGCTTGATTCCCTC 58.314 33.333 0.00 0.00 0.00 4.30
5313 5725 8.286191 ACTTTGAATTCCCTATTGAACATCTC 57.714 34.615 2.27 0.00 0.00 2.75
5327 5739 6.367149 GGATTTGAGCTTGAACTTTGAATTCC 59.633 38.462 2.27 0.00 0.00 3.01
5330 5742 6.409524 TGGATTTGAGCTTGAACTTTGAAT 57.590 33.333 0.00 0.00 0.00 2.57
5350 5762 7.264221 GTGCCAAACATTTGTTATATGATGGA 58.736 34.615 11.80 0.00 37.25 3.41
5357 5769 7.116948 CCATTTTCGTGCCAAACATTTGTTATA 59.883 33.333 3.79 0.00 37.25 0.98
5375 5787 4.219725 AGGGGAACATACAAACCATTTTCG 59.780 41.667 0.00 0.00 0.00 3.46
5381 5793 5.014755 ACATAGAAGGGGAACATACAAACCA 59.985 40.000 0.00 0.00 0.00 3.67
5388 5800 6.636454 AGAAACACATAGAAGGGGAACATA 57.364 37.500 0.00 0.00 0.00 2.29
5417 5829 8.451908 ACGCTTATCCTAGCTTGATTTTAATT 57.548 30.769 0.00 0.00 39.03 1.40
5418 5830 9.555727 TTACGCTTATCCTAGCTTGATTTTAAT 57.444 29.630 0.00 0.00 39.03 1.40
5419 5831 8.951787 TTACGCTTATCCTAGCTTGATTTTAA 57.048 30.769 0.00 0.00 39.03 1.52
5420 5832 8.951787 TTTACGCTTATCCTAGCTTGATTTTA 57.048 30.769 0.00 0.00 39.03 1.52
5423 5835 7.499232 ACAATTTACGCTTATCCTAGCTTGATT 59.501 33.333 0.00 0.00 39.03 2.57
5426 5838 6.604735 ACAATTTACGCTTATCCTAGCTTG 57.395 37.500 0.00 0.00 39.03 4.01
5432 5844 5.123344 GGTGTGAACAATTTACGCTTATCCT 59.877 40.000 0.00 0.00 0.00 3.24
5439 5851 5.915758 TGTTATTGGTGTGAACAATTTACGC 59.084 36.000 0.00 0.00 39.18 4.42
5441 5853 9.567848 CCTATGTTATTGGTGTGAACAATTTAC 57.432 33.333 0.00 0.00 39.18 2.01
5442 5854 8.744652 CCCTATGTTATTGGTGTGAACAATTTA 58.255 33.333 0.00 0.00 39.18 1.40
5443 5855 7.610865 CCCTATGTTATTGGTGTGAACAATTT 58.389 34.615 0.00 0.00 39.18 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.