Multiple sequence alignment - TraesCS3D01G451600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G451600 chr3D 100.000 2810 0 0 1 2810 559167083 559169892 0.000000e+00 5190.0
1 TraesCS3D01G451600 chr3D 88.820 161 17 1 2650 2810 449740281 449740440 2.210000e-46 196.0
2 TraesCS3D01G451600 chr3A 95.983 921 29 5 902 1814 695677305 695678225 0.000000e+00 1489.0
3 TraesCS3D01G451600 chr3A 92.469 717 35 6 4 713 695670375 695671079 0.000000e+00 1007.0
4 TraesCS3D01G451600 chr3A 82.916 878 111 15 978 1825 695671253 695672121 0.000000e+00 754.0
5 TraesCS3D01G451600 chr3A 90.860 186 13 4 2473 2656 695679771 695679954 2.160000e-61 246.0
6 TraesCS3D01G451600 chr3A 94.783 115 3 1 731 845 695671068 695671179 2.880000e-40 176.0
7 TraesCS3D01G451600 chr3A 100.000 28 0 0 854 881 486208318 486208291 5.000000e-03 52.8
8 TraesCS3D01G451600 chr3B 81.767 883 97 22 927 1773 742167448 742168302 0.000000e+00 680.0
9 TraesCS3D01G451600 chr3B 87.736 212 10 3 634 845 742167208 742167403 1.680000e-57 233.0
10 TraesCS3D01G451600 chr3B 77.975 395 50 25 159 531 742165644 742166023 2.190000e-51 213.0
11 TraesCS3D01G451600 chr7A 90.184 163 15 1 2648 2810 451519808 451519969 7.890000e-51 211.0
12 TraesCS3D01G451600 chr6D 90.123 162 15 1 2649 2810 48457971 48458131 2.840000e-50 209.0
13 TraesCS3D01G451600 chr7D 89.571 163 16 1 2648 2810 397555080 397554919 3.670000e-49 206.0
14 TraesCS3D01G451600 chr7D 87.425 167 21 0 2644 2810 41471832 41471998 2.860000e-45 193.0
15 TraesCS3D01G451600 chr5A 89.375 160 16 1 2651 2810 475324529 475324371 1.710000e-47 200.0
16 TraesCS3D01G451600 chr5A 88.820 161 17 1 2650 2810 426896903 426896744 2.210000e-46 196.0
17 TraesCS3D01G451600 chr5A 87.582 153 13 2 2336 2488 3287428 3287574 3.720000e-39 172.0
18 TraesCS3D01G451600 chr7B 88.485 165 18 1 2646 2810 102234483 102234320 6.140000e-47 198.0
19 TraesCS3D01G451600 chr1A 89.241 158 16 1 2651 2808 295587976 295588132 2.210000e-46 196.0
20 TraesCS3D01G451600 chr1A 97.222 36 1 0 844 879 224823839 224823804 8.400000e-06 62.1
21 TraesCS3D01G451600 chr5D 78.816 321 33 15 2319 2616 5558651 5558959 1.720000e-42 183.0
22 TraesCS3D01G451600 chr5D 88.235 153 12 2 2336 2488 6384645 6384499 8.000000e-41 178.0
23 TraesCS3D01G451600 chr2D 92.857 84 5 1 66 149 50014741 50014659 1.370000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G451600 chr3D 559167083 559169892 2809 False 5190.000000 5190 100.000000 1 2810 1 chr3D.!!$F2 2809
1 TraesCS3D01G451600 chr3A 695677305 695679954 2649 False 867.500000 1489 93.421500 902 2656 2 chr3A.!!$F2 1754
2 TraesCS3D01G451600 chr3A 695670375 695672121 1746 False 645.666667 1007 90.056000 4 1825 3 chr3A.!!$F1 1821
3 TraesCS3D01G451600 chr3B 742165644 742168302 2658 False 375.333333 680 82.492667 159 1773 3 chr3B.!!$F1 1614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 1991 0.036388 TCTCCAACAGACGCCCAATC 60.036 55.0 0.0 0.0 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 3589 0.031857 CGATCTGCTCATCTTCGGCT 59.968 55.0 0.0 0.0 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.774503 GCCTGCTCGCTGCCTTCT 62.775 66.667 0.00 0.00 42.00 2.85
34 35 3.181433 TGCCTTCTATCGAGGTGAGGATA 60.181 47.826 10.76 0.00 36.63 2.59
103 104 1.907807 GCCATGGCCAGGAACACAA 60.908 57.895 27.24 0.00 34.56 3.33
118 119 2.936202 ACACAAGGTGTTTCATGAGCT 58.064 42.857 0.00 0.00 45.08 4.09
132 133 1.739562 GAGCTGCACCTTCAGTCGG 60.740 63.158 1.02 0.00 36.49 4.79
151 152 1.360192 GCAGCACCACAACACCTTC 59.640 57.895 0.00 0.00 0.00 3.46
153 154 1.102154 CAGCACCACAACACCTTCAA 58.898 50.000 0.00 0.00 0.00 2.69
194 195 1.604693 CGGCAAGTCTAGTTCGGTTGT 60.605 52.381 0.00 0.00 0.00 3.32
389 411 8.421249 TTGATTCTGAACATTGGGAAAATACT 57.579 30.769 0.00 0.00 0.00 2.12
390 412 9.527157 TTGATTCTGAACATTGGGAAAATACTA 57.473 29.630 0.00 0.00 0.00 1.82
391 413 8.956426 TGATTCTGAACATTGGGAAAATACTAC 58.044 33.333 0.00 0.00 0.00 2.73
471 498 5.072741 CCAGAAATGAAGAAAACCTGAGGA 58.927 41.667 4.99 0.00 0.00 3.71
539 566 6.412460 CAACTATCTACACTAGAAGACGACG 58.588 44.000 0.00 0.00 38.50 5.12
540 567 5.049167 ACTATCTACACTAGAAGACGACGG 58.951 45.833 0.00 0.00 38.50 4.79
600 627 6.344780 CGAAGAATAAATTCTACGCCACTACG 60.345 42.308 5.67 0.00 45.83 3.51
611 638 3.808728 ACGCCACTACGGTAGAATAGTA 58.191 45.455 21.39 0.00 37.37 1.82
718 1828 1.682451 GCCCATGTCGCCCAGTACTA 61.682 60.000 0.00 0.00 0.00 1.82
720 1830 1.399714 CCATGTCGCCCAGTACTAGA 58.600 55.000 0.00 0.00 0.00 2.43
721 1831 1.754803 CCATGTCGCCCAGTACTAGAA 59.245 52.381 0.00 0.00 0.00 2.10
845 1955 3.127533 AGTGCCCGCGCTTTCATC 61.128 61.111 5.56 0.00 32.16 2.92
847 1957 2.438254 TGCCCGCGCTTTCATCAT 60.438 55.556 5.56 0.00 35.36 2.45
849 1959 0.746204 TGCCCGCGCTTTCATCATAA 60.746 50.000 5.56 0.00 35.36 1.90
851 1961 1.001378 GCCCGCGCTTTCATCATAAAT 60.001 47.619 5.56 0.00 0.00 1.40
852 1962 2.918131 GCCCGCGCTTTCATCATAAATC 60.918 50.000 5.56 0.00 0.00 2.17
853 1963 2.290367 CCCGCGCTTTCATCATAAATCA 59.710 45.455 5.56 0.00 0.00 2.57
854 1964 3.058016 CCCGCGCTTTCATCATAAATCAT 60.058 43.478 5.56 0.00 0.00 2.45
855 1965 4.154015 CCCGCGCTTTCATCATAAATCATA 59.846 41.667 5.56 0.00 0.00 2.15
856 1966 5.334802 CCCGCGCTTTCATCATAAATCATAA 60.335 40.000 5.56 0.00 0.00 1.90
857 1967 5.791974 CCGCGCTTTCATCATAAATCATAAG 59.208 40.000 5.56 0.00 0.00 1.73
861 1971 7.578852 CGCTTTCATCATAAATCATAAGAGCA 58.421 34.615 0.00 0.00 0.00 4.26
875 1985 2.378028 GAGCATCTCCAACAGACGC 58.622 57.895 0.00 0.00 40.90 5.19
876 1986 1.078848 AGCATCTCCAACAGACGCC 60.079 57.895 0.00 0.00 41.57 5.68
877 1987 2.109126 GCATCTCCAACAGACGCCC 61.109 63.158 0.00 0.00 33.99 6.13
878 1988 1.296392 CATCTCCAACAGACGCCCA 59.704 57.895 0.00 0.00 32.26 5.36
879 1989 0.321564 CATCTCCAACAGACGCCCAA 60.322 55.000 0.00 0.00 32.26 4.12
880 1990 0.620556 ATCTCCAACAGACGCCCAAT 59.379 50.000 0.00 0.00 32.26 3.16
881 1991 0.036388 TCTCCAACAGACGCCCAATC 60.036 55.000 0.00 0.00 0.00 2.67
882 1992 1.361668 CTCCAACAGACGCCCAATCG 61.362 60.000 0.00 0.00 0.00 3.34
883 1993 1.375396 CCAACAGACGCCCAATCGA 60.375 57.895 0.00 0.00 0.00 3.59
884 1994 1.361668 CCAACAGACGCCCAATCGAG 61.362 60.000 0.00 0.00 0.00 4.04
885 1995 1.741770 AACAGACGCCCAATCGAGC 60.742 57.895 0.00 0.00 0.00 5.03
886 1996 2.892425 CAGACGCCCAATCGAGCC 60.892 66.667 0.00 0.00 0.00 4.70
887 1997 4.514577 AGACGCCCAATCGAGCCG 62.515 66.667 0.00 0.00 0.00 5.52
901 2011 2.053029 GCCGCGCGCTAAATTCTC 60.053 61.111 30.48 4.84 0.00 2.87
902 2012 2.808958 GCCGCGCGCTAAATTCTCA 61.809 57.895 30.48 0.00 0.00 3.27
903 2013 1.273887 CCGCGCGCTAAATTCTCAG 59.726 57.895 30.48 9.02 0.00 3.35
904 2014 1.366961 CGCGCGCTAAATTCTCAGC 60.367 57.895 30.48 0.00 0.00 4.26
905 2015 1.756375 CGCGCGCTAAATTCTCAGCT 61.756 55.000 30.48 0.00 35.57 4.24
906 2016 1.209128 GCGCGCTAAATTCTCAGCTA 58.791 50.000 26.67 0.00 35.57 3.32
952 2070 2.234908 CCTCCTCGATTGTTTCCTGTCT 59.765 50.000 0.00 0.00 0.00 3.41
1062 2186 2.353406 GGAGATCCACTTTCGTTTCCGA 60.353 50.000 0.00 0.00 37.35 4.55
1212 2354 1.546476 AGGAAGCTCGACCTACAGTTG 59.454 52.381 5.45 0.00 34.47 3.16
1253 2395 1.072965 CTTCCAGTCTGGCAAGGACTT 59.927 52.381 14.64 0.00 41.45 3.01
1783 2946 3.244387 GCCTCCAAGGAGTTCAGATATCC 60.244 52.174 14.65 0.00 37.67 2.59
1789 2956 1.896465 GGAGTTCAGATATCCCCGAGG 59.104 57.143 0.00 0.00 0.00 4.63
1806 2973 2.495084 GAGGCGGAGATAAACCATTCC 58.505 52.381 0.00 0.00 0.00 3.01
1810 2977 4.351111 AGGCGGAGATAAACCATTCCTAAT 59.649 41.667 0.00 0.00 0.00 1.73
1814 2981 6.431234 GCGGAGATAAACCATTCCTAATTGAT 59.569 38.462 0.00 0.00 0.00 2.57
1849 3016 9.922477 AGGTGATAGATAGTTCATATATTCCGA 57.078 33.333 0.00 0.00 0.00 4.55
1873 3564 8.836413 CGAAGGTGAAGAATTATAATTAGCCAA 58.164 33.333 10.68 0.00 0.00 4.52
1875 3566 8.465273 AGGTGAAGAATTATAATTAGCCAACC 57.535 34.615 10.68 13.59 0.00 3.77
1876 3567 7.505923 AGGTGAAGAATTATAATTAGCCAACCC 59.494 37.037 10.68 7.40 0.00 4.11
1877 3568 7.505923 GGTGAAGAATTATAATTAGCCAACCCT 59.494 37.037 10.68 0.00 0.00 4.34
1884 3575 0.995024 ATTAGCCAACCCTCAGCAGT 59.005 50.000 0.00 0.00 0.00 4.40
1889 3580 1.209504 GCCAACCCTCAGCAGTATGTA 59.790 52.381 0.00 0.00 39.31 2.29
1890 3581 2.743183 GCCAACCCTCAGCAGTATGTAG 60.743 54.545 0.00 0.00 39.31 2.74
1892 3583 3.389329 CCAACCCTCAGCAGTATGTAGAT 59.611 47.826 0.00 0.00 39.31 1.98
1893 3584 4.502259 CCAACCCTCAGCAGTATGTAGATC 60.502 50.000 0.00 0.00 39.31 2.75
1895 3586 2.564947 CCCTCAGCAGTATGTAGATCCC 59.435 54.545 0.00 0.00 39.31 3.85
1896 3587 3.234353 CCTCAGCAGTATGTAGATCCCA 58.766 50.000 0.00 0.00 39.31 4.37
1897 3588 3.837146 CCTCAGCAGTATGTAGATCCCAT 59.163 47.826 0.00 0.00 39.31 4.00
1898 3589 5.019470 CCTCAGCAGTATGTAGATCCCATA 58.981 45.833 0.00 0.00 39.31 2.74
1900 3591 4.464244 TCAGCAGTATGTAGATCCCATAGC 59.536 45.833 3.55 5.10 39.31 2.97
1903 3594 4.017126 CAGTATGTAGATCCCATAGCCGA 58.983 47.826 3.55 0.00 0.00 5.54
1904 3595 4.462834 CAGTATGTAGATCCCATAGCCGAA 59.537 45.833 3.55 0.00 0.00 4.30
1906 3597 3.238788 TGTAGATCCCATAGCCGAAGA 57.761 47.619 0.00 0.00 0.00 2.87
1907 3598 3.779444 TGTAGATCCCATAGCCGAAGAT 58.221 45.455 0.00 0.00 0.00 2.40
1908 3599 3.511540 TGTAGATCCCATAGCCGAAGATG 59.488 47.826 0.00 0.00 0.00 2.90
1909 3600 2.894731 AGATCCCATAGCCGAAGATGA 58.105 47.619 0.00 0.00 0.00 2.92
1910 3601 2.830923 AGATCCCATAGCCGAAGATGAG 59.169 50.000 0.00 0.00 0.00 2.90
1911 3602 0.681733 TCCCATAGCCGAAGATGAGC 59.318 55.000 0.00 0.00 0.00 4.26
1912 3603 0.394192 CCCATAGCCGAAGATGAGCA 59.606 55.000 0.00 0.00 0.00 4.26
1913 3604 1.607509 CCCATAGCCGAAGATGAGCAG 60.608 57.143 0.00 0.00 0.00 4.24
1914 3605 1.342496 CCATAGCCGAAGATGAGCAGA 59.658 52.381 0.00 0.00 0.00 4.26
1915 3606 2.028294 CCATAGCCGAAGATGAGCAGAT 60.028 50.000 0.00 0.00 0.00 2.90
1917 3608 0.031857 AGCCGAAGATGAGCAGATCG 59.968 55.000 0.00 0.00 0.00 3.69
1918 3609 1.555741 GCCGAAGATGAGCAGATCGC 61.556 60.000 1.92 1.92 42.91 4.58
1919 3610 0.249197 CCGAAGATGAGCAGATCGCA 60.249 55.000 11.20 0.00 46.13 5.10
1920 3611 1.604947 CCGAAGATGAGCAGATCGCAT 60.605 52.381 11.20 3.36 46.13 4.73
1925 3616 2.685100 GATGAGCAGATCGCATCATGA 58.315 47.619 18.72 0.00 46.88 3.07
1930 3621 1.416373 CAGATCGCATCATGAGACGG 58.584 55.000 17.19 2.00 0.00 4.79
1931 3622 0.316522 AGATCGCATCATGAGACGGG 59.683 55.000 17.19 9.52 0.00 5.28
1932 3623 1.287730 GATCGCATCATGAGACGGGC 61.288 60.000 17.19 7.83 0.00 6.13
1934 3625 3.643978 GCATCATGAGACGGGCGC 61.644 66.667 0.00 0.00 0.00 6.53
1935 3626 3.333189 CATCATGAGACGGGCGCG 61.333 66.667 22.69 22.69 0.00 6.86
1936 3627 3.527427 ATCATGAGACGGGCGCGA 61.527 61.111 30.98 7.56 0.00 5.87
1938 3629 2.369257 ATCATGAGACGGGCGCGAAT 62.369 55.000 30.98 17.09 0.00 3.34
1939 3630 2.279517 ATGAGACGGGCGCGAATC 60.280 61.111 30.98 24.19 0.00 2.52
1940 3631 2.786495 ATGAGACGGGCGCGAATCT 61.786 57.895 30.98 22.20 0.00 2.40
1941 3632 2.202756 GAGACGGGCGCGAATCTT 60.203 61.111 30.98 6.55 0.00 2.40
1942 3633 1.810030 GAGACGGGCGCGAATCTTT 60.810 57.895 30.98 5.68 0.00 2.52
1943 3634 1.753468 GAGACGGGCGCGAATCTTTC 61.753 60.000 30.98 15.30 0.00 2.62
1944 3635 2.047655 ACGGGCGCGAATCTTTCA 60.048 55.556 30.98 0.00 0.00 2.69
1945 3636 1.429148 GACGGGCGCGAATCTTTCAT 61.429 55.000 30.98 3.10 0.00 2.57
1946 3637 1.010797 CGGGCGCGAATCTTTCATG 60.011 57.895 19.65 0.00 0.00 3.07
1947 3638 1.428370 CGGGCGCGAATCTTTCATGA 61.428 55.000 19.65 0.00 0.00 3.07
1948 3639 0.732571 GGGCGCGAATCTTTCATGAA 59.267 50.000 12.10 3.38 0.00 2.57
1949 3640 1.132262 GGGCGCGAATCTTTCATGAAA 59.868 47.619 19.45 19.45 0.00 2.69
1950 3641 2.415357 GGGCGCGAATCTTTCATGAAAA 60.415 45.455 20.82 12.56 0.00 2.29
1951 3642 3.438360 GGCGCGAATCTTTCATGAAAAT 58.562 40.909 20.82 14.05 0.00 1.82
1953 3644 4.027377 GGCGCGAATCTTTCATGAAAATTC 60.027 41.667 26.16 26.16 31.83 2.17
1954 3645 4.558470 GCGCGAATCTTTCATGAAAATTCA 59.442 37.500 29.94 16.91 42.14 2.57
1955 3646 5.060816 GCGCGAATCTTTCATGAAAATTCAA 59.939 36.000 29.94 16.15 41.13 2.69
1956 3647 6.399880 GCGCGAATCTTTCATGAAAATTCAAA 60.400 34.615 29.94 15.01 41.13 2.69
1957 3648 6.944400 CGCGAATCTTTCATGAAAATTCAAAC 59.056 34.615 29.94 23.51 41.13 2.93
1959 3650 7.148983 GCGAATCTTTCATGAAAATTCAAACGA 60.149 33.333 29.94 20.69 41.13 3.85
1960 3651 8.149661 CGAATCTTTCATGAAAATTCAAACGAC 58.850 33.333 29.94 17.12 41.13 4.34
1967 3874 5.553290 TGAAAATTCAAACGACTGTGTGA 57.447 34.783 0.00 0.00 40.64 3.58
1968 3875 6.130298 TGAAAATTCAAACGACTGTGTGAT 57.870 33.333 0.00 0.00 41.92 3.06
1971 3878 7.543868 TGAAAATTCAAACGACTGTGTGATTTT 59.456 29.630 0.00 3.75 41.92 1.82
1972 3879 6.810888 AATTCAAACGACTGTGTGATTTTG 57.189 33.333 0.00 0.00 41.92 2.44
1973 3880 4.285807 TCAAACGACTGTGTGATTTTGG 57.714 40.909 0.00 0.00 37.42 3.28
1975 3882 4.876679 TCAAACGACTGTGTGATTTTGGTA 59.123 37.500 0.00 0.00 37.42 3.25
1976 3883 4.806342 AACGACTGTGTGATTTTGGTAC 57.194 40.909 0.00 0.00 0.00 3.34
1977 3884 3.135994 ACGACTGTGTGATTTTGGTACC 58.864 45.455 4.43 4.43 0.00 3.34
1981 3888 0.524414 GTGTGATTTTGGTACCGGCC 59.476 55.000 7.57 0.00 0.00 6.13
1982 3889 0.956410 TGTGATTTTGGTACCGGCCG 60.956 55.000 21.04 21.04 0.00 6.13
1984 3891 2.044749 ATTTTGGTACCGGCCGGG 60.045 61.111 44.99 28.13 43.62 5.73
2009 3916 9.601217 GGTACCATACCTCAAAGCATTATATAG 57.399 37.037 7.15 0.00 45.52 1.31
2012 3919 9.507329 ACCATACCTCAAAGCATTATATAGTTG 57.493 33.333 0.00 0.00 0.00 3.16
2013 3920 8.454106 CCATACCTCAAAGCATTATATAGTTGC 58.546 37.037 10.30 10.30 36.63 4.17
2014 3921 9.002600 CATACCTCAAAGCATTATATAGTTGCA 57.997 33.333 17.21 0.00 38.84 4.08
2016 3923 6.488006 ACCTCAAAGCATTATATAGTTGCAGG 59.512 38.462 17.21 16.15 38.84 4.85
2017 3924 6.317789 TCAAAGCATTATATAGTTGCAGGC 57.682 37.500 17.21 2.21 38.84 4.85
2018 3925 6.064060 TCAAAGCATTATATAGTTGCAGGCT 58.936 36.000 17.21 4.21 38.84 4.58
2022 3929 8.463930 AAGCATTATATAGTTGCAGGCTTTTA 57.536 30.769 17.21 0.00 38.84 1.52
2023 3930 8.641498 AGCATTATATAGTTGCAGGCTTTTAT 57.359 30.769 17.21 1.29 38.84 1.40
2024 3931 9.082313 AGCATTATATAGTTGCAGGCTTTTATT 57.918 29.630 17.21 0.00 38.84 1.40
2032 3939 9.813826 ATAGTTGCAGGCTTTTATTAGGATATT 57.186 29.630 0.00 0.00 0.00 1.28
2033 3940 8.171164 AGTTGCAGGCTTTTATTAGGATATTC 57.829 34.615 0.00 0.00 0.00 1.75
2034 3941 7.231519 AGTTGCAGGCTTTTATTAGGATATTCC 59.768 37.037 0.00 0.00 36.58 3.01
2035 3942 5.705441 TGCAGGCTTTTATTAGGATATTCCG 59.295 40.000 0.00 0.00 42.75 4.30
2036 3943 5.705905 GCAGGCTTTTATTAGGATATTCCGT 59.294 40.000 0.00 0.00 42.75 4.69
2037 3944 6.128254 GCAGGCTTTTATTAGGATATTCCGTC 60.128 42.308 0.00 0.00 42.75 4.79
2038 3945 7.162082 CAGGCTTTTATTAGGATATTCCGTCT 58.838 38.462 0.00 0.00 42.75 4.18
2069 3976 2.195567 GCCAGTGCATGTGTGGTGT 61.196 57.895 10.61 0.00 37.47 4.16
2072 3979 2.195567 AGTGCATGTGTGGTGTGCC 61.196 57.895 0.00 0.00 38.06 5.01
2073 3980 2.123982 TGCATGTGTGGTGTGCCA 60.124 55.556 0.00 0.00 43.73 4.92
2081 3988 2.977456 TGGTGTGCCATGCGTGAC 60.977 61.111 7.72 0.00 40.46 3.67
2082 3989 2.977456 GGTGTGCCATGCGTGACA 60.977 61.111 7.72 0.00 34.09 3.58
2083 3990 2.334946 GGTGTGCCATGCGTGACAT 61.335 57.895 7.72 0.00 40.66 3.06
2084 3991 1.135315 GTGTGCCATGCGTGACATC 59.865 57.895 7.72 0.00 36.64 3.06
2087 3994 2.100031 TGCCATGCGTGACATCGAC 61.100 57.895 7.72 0.00 36.64 4.20
2088 3995 1.811266 GCCATGCGTGACATCGACT 60.811 57.895 7.72 0.00 36.64 4.18
2089 3996 1.756375 GCCATGCGTGACATCGACTC 61.756 60.000 7.72 0.00 36.64 3.36
2090 3997 0.179127 CCATGCGTGACATCGACTCT 60.179 55.000 7.72 0.00 36.64 3.24
2091 3998 1.633561 CATGCGTGACATCGACTCTT 58.366 50.000 0.00 0.00 36.64 2.85
2092 3999 1.585668 CATGCGTGACATCGACTCTTC 59.414 52.381 0.00 0.00 36.64 2.87
2093 4000 0.596082 TGCGTGACATCGACTCTTCA 59.404 50.000 0.00 0.00 0.00 3.02
2094 4001 1.000717 TGCGTGACATCGACTCTTCAA 60.001 47.619 0.00 0.00 0.00 2.69
2095 4002 2.058798 GCGTGACATCGACTCTTCAAA 58.941 47.619 0.00 0.00 0.00 2.69
2096 4003 2.159960 GCGTGACATCGACTCTTCAAAC 60.160 50.000 0.00 0.00 0.00 2.93
2097 4004 3.049912 CGTGACATCGACTCTTCAAACA 58.950 45.455 0.00 0.00 0.00 2.83
2098 4005 3.121328 CGTGACATCGACTCTTCAAACAC 60.121 47.826 0.00 0.00 0.00 3.32
2099 4006 4.051922 GTGACATCGACTCTTCAAACACT 58.948 43.478 0.00 0.00 0.00 3.55
2100 4007 4.051237 TGACATCGACTCTTCAAACACTG 58.949 43.478 0.00 0.00 0.00 3.66
2101 4008 4.202111 TGACATCGACTCTTCAAACACTGA 60.202 41.667 0.00 0.00 0.00 3.41
2102 4009 4.051922 ACATCGACTCTTCAAACACTGAC 58.948 43.478 0.00 0.00 32.21 3.51
2103 4010 3.793797 TCGACTCTTCAAACACTGACA 57.206 42.857 0.00 0.00 32.21 3.58
2104 4011 3.444916 TCGACTCTTCAAACACTGACAC 58.555 45.455 0.00 0.00 32.21 3.67
2105 4012 2.540101 CGACTCTTCAAACACTGACACC 59.460 50.000 0.00 0.00 32.21 4.16
2106 4013 2.872858 GACTCTTCAAACACTGACACCC 59.127 50.000 0.00 0.00 32.21 4.61
2107 4014 2.238646 ACTCTTCAAACACTGACACCCA 59.761 45.455 0.00 0.00 32.21 4.51
2108 4015 3.117888 ACTCTTCAAACACTGACACCCAT 60.118 43.478 0.00 0.00 32.21 4.00
2109 4016 4.102524 ACTCTTCAAACACTGACACCCATA 59.897 41.667 0.00 0.00 32.21 2.74
2110 4017 5.042463 TCTTCAAACACTGACACCCATAA 57.958 39.130 0.00 0.00 32.21 1.90
2114 4021 4.336993 TCAAACACTGACACCCATAAACAC 59.663 41.667 0.00 0.00 0.00 3.32
2192 4106 9.853177 AAATAAGTATTTCCCATCTAACTCCTG 57.147 33.333 0.00 0.00 30.50 3.86
2197 4111 5.708736 TTTCCCATCTAACTCCTGCATTA 57.291 39.130 0.00 0.00 0.00 1.90
2206 4120 7.572523 TCTAACTCCTGCATTATTGGATTTG 57.427 36.000 5.18 0.00 0.00 2.32
2208 4122 5.841957 ACTCCTGCATTATTGGATTTGAC 57.158 39.130 0.00 0.00 0.00 3.18
2209 4123 4.336433 ACTCCTGCATTATTGGATTTGACG 59.664 41.667 0.00 0.00 0.00 4.35
2210 4124 3.066621 TCCTGCATTATTGGATTTGACGC 59.933 43.478 0.00 0.00 0.00 5.19
2211 4125 3.038017 CTGCATTATTGGATTTGACGCG 58.962 45.455 3.53 3.53 0.00 6.01
2214 4128 4.202000 TGCATTATTGGATTTGACGCGAAT 60.202 37.500 15.93 0.98 0.00 3.34
2215 4129 5.008118 TGCATTATTGGATTTGACGCGAATA 59.992 36.000 15.93 0.07 0.00 1.75
2217 4131 6.249260 GCATTATTGGATTTGACGCGAATATC 59.751 38.462 15.93 10.52 0.00 1.63
2223 4137 4.201589 GGATTTGACGCGAATATCCGTATG 60.202 45.833 15.93 0.00 37.87 2.39
2236 4150 3.126001 TCCGTATGGATGATTTGCTCC 57.874 47.619 0.00 0.00 40.17 4.70
2239 4153 3.415212 CGTATGGATGATTTGCTCCCAT 58.585 45.455 0.00 0.00 40.40 4.00
2242 4156 5.649395 CGTATGGATGATTTGCTCCCATATT 59.351 40.000 0.00 0.00 40.63 1.28
2246 4160 4.083110 GGATGATTTGCTCCCATATTCGTG 60.083 45.833 0.00 0.00 0.00 4.35
2258 4172 0.528924 TATTCGTGTCCGTGGACTGG 59.471 55.000 19.17 11.17 44.80 4.00
2261 4176 2.561956 CGTGTCCGTGGACTGGTCT 61.562 63.158 19.17 0.00 44.80 3.85
2266 4181 2.701780 CCGTGGACTGGTCTCCTCG 61.702 68.421 3.29 3.29 43.76 4.63
2296 4211 1.675552 GGATACCATGTCCGGTTTGG 58.324 55.000 15.47 15.47 40.67 3.28
2297 4212 1.675552 GATACCATGTCCGGTTTGGG 58.324 55.000 19.40 12.41 40.67 4.12
2300 4215 1.378762 CCATGTCCGGTTTGGGAGT 59.621 57.895 0.00 0.00 36.58 3.85
2303 4218 0.768622 ATGTCCGGTTTGGGAGTCAA 59.231 50.000 0.00 0.00 36.58 3.18
2304 4219 0.768622 TGTCCGGTTTGGGAGTCAAT 59.231 50.000 0.00 0.00 36.58 2.57
2307 4222 1.979308 TCCGGTTTGGGAGTCAATGTA 59.021 47.619 0.00 0.00 38.76 2.29
2313 4228 4.080299 GGTTTGGGAGTCAATGTAGGAGAT 60.080 45.833 0.00 0.00 34.98 2.75
2327 4242 3.853355 AGGAGATGCCCTTATCAGTTG 57.147 47.619 0.00 0.00 37.37 3.16
2349 4264 5.092968 TGAATGAAAAATGAAGATGGGGGT 58.907 37.500 0.00 0.00 0.00 4.95
2351 4266 4.888326 TGAAAAATGAAGATGGGGGTTG 57.112 40.909 0.00 0.00 0.00 3.77
2370 4285 1.410850 GGGGGATTGCAGATCGAGGA 61.411 60.000 0.00 0.00 0.00 3.71
2376 4291 3.181506 GGATTGCAGATCGAGGAAACAAC 60.182 47.826 0.00 0.00 0.00 3.32
2396 4311 4.415881 ACCACAATGTTCTGTACTGTCA 57.584 40.909 0.00 0.00 0.00 3.58
2398 4313 6.109156 ACCACAATGTTCTGTACTGTCATA 57.891 37.500 11.07 0.00 0.00 2.15
2402 4317 7.173218 CCACAATGTTCTGTACTGTCATAAACT 59.827 37.037 11.07 0.00 0.00 2.66
2403 4318 9.203421 CACAATGTTCTGTACTGTCATAAACTA 57.797 33.333 11.07 0.00 0.00 2.24
2404 4319 9.944376 ACAATGTTCTGTACTGTCATAAACTAT 57.056 29.630 11.07 0.53 0.00 2.12
2416 4331 9.595823 ACTGTCATAAACTATAATACGTTGCTT 57.404 29.630 0.00 0.00 0.00 3.91
2428 4343 3.004024 ACGTTGCTTTGAGATTGCTTG 57.996 42.857 0.00 0.00 0.00 4.01
2449 4364 1.072965 GGGAGGGGCTAGATTCATGTG 59.927 57.143 0.00 0.00 0.00 3.21
2450 4365 1.072965 GGAGGGGCTAGATTCATGTGG 59.927 57.143 0.00 0.00 0.00 4.17
2451 4366 2.050144 GAGGGGCTAGATTCATGTGGA 58.950 52.381 0.00 0.00 0.00 4.02
2452 4367 2.038295 GAGGGGCTAGATTCATGTGGAG 59.962 54.545 0.00 0.00 0.00 3.86
2453 4368 1.544314 GGGGCTAGATTCATGTGGAGC 60.544 57.143 0.00 0.00 0.00 4.70
2454 4369 1.889545 GGCTAGATTCATGTGGAGCC 58.110 55.000 0.00 9.82 42.45 4.70
2455 4370 2.627515 GCTAGATTCATGTGGAGCCA 57.372 50.000 0.00 0.00 0.00 4.75
2456 4371 3.137446 GCTAGATTCATGTGGAGCCAT 57.863 47.619 0.00 0.00 0.00 4.40
2457 4372 2.812591 GCTAGATTCATGTGGAGCCATG 59.187 50.000 0.00 0.00 42.89 3.66
2458 4373 1.688772 AGATTCATGTGGAGCCATGC 58.311 50.000 0.00 0.00 41.60 4.06
2475 4390 4.681421 CTGCAAGCTCGGAGTTGA 57.319 55.556 18.27 7.71 0.00 3.18
2478 4393 1.808945 CTGCAAGCTCGGAGTTGAATT 59.191 47.619 18.27 1.81 0.00 2.17
2486 4401 3.146066 CTCGGAGTTGAATTTTGGACCA 58.854 45.455 0.00 0.00 0.00 4.02
2487 4402 3.758554 CTCGGAGTTGAATTTTGGACCAT 59.241 43.478 0.00 0.00 0.00 3.55
2488 4403 3.756434 TCGGAGTTGAATTTTGGACCATC 59.244 43.478 0.00 0.00 0.00 3.51
2496 4603 0.701731 TTTTGGACCATCGTGGGGAT 59.298 50.000 0.00 0.00 43.37 3.85
2527 4634 7.455641 TTCTTTCGGTATGCAGGAAAAATAA 57.544 32.000 0.00 0.00 0.00 1.40
2530 4637 7.556275 TCTTTCGGTATGCAGGAAAAATAATCT 59.444 33.333 0.00 0.00 0.00 2.40
2538 4645 7.707624 TGCAGGAAAAATAATCTGAATGTCT 57.292 32.000 0.00 0.00 0.00 3.41
2599 4706 6.306987 TCTCCAAAGGGAATGGAATATAAGC 58.693 40.000 0.00 0.00 45.96 3.09
2601 4708 6.070656 TCCAAAGGGAATGGAATATAAGCTG 58.929 40.000 0.00 0.00 43.84 4.24
2619 4726 1.747355 CTGGGCAGCCTGAATTTGTAG 59.253 52.381 12.43 0.00 0.00 2.74
2623 4730 3.016736 GGCAGCCTGAATTTGTAGCTTA 58.983 45.455 3.29 0.00 0.00 3.09
2624 4731 3.633986 GGCAGCCTGAATTTGTAGCTTAT 59.366 43.478 3.29 0.00 0.00 1.73
2742 4850 9.851686 ATAAACATGGTTTAGAGCATAGATTCA 57.148 29.630 0.00 0.00 41.82 2.57
2743 4851 7.559590 AACATGGTTTAGAGCATAGATTCAC 57.440 36.000 0.00 0.00 41.82 3.18
2744 4852 6.893583 ACATGGTTTAGAGCATAGATTCACT 58.106 36.000 0.00 0.00 41.82 3.41
2745 4853 6.989169 ACATGGTTTAGAGCATAGATTCACTC 59.011 38.462 0.00 0.00 41.82 3.51
2746 4854 6.544928 TGGTTTAGAGCATAGATTCACTCA 57.455 37.500 0.00 0.00 0.00 3.41
2747 4855 7.129457 TGGTTTAGAGCATAGATTCACTCAT 57.871 36.000 0.00 0.00 0.00 2.90
2748 4856 7.568349 TGGTTTAGAGCATAGATTCACTCATT 58.432 34.615 0.00 0.00 0.00 2.57
2749 4857 8.049117 TGGTTTAGAGCATAGATTCACTCATTT 58.951 33.333 0.00 0.00 0.00 2.32
2750 4858 8.897752 GGTTTAGAGCATAGATTCACTCATTTT 58.102 33.333 0.00 0.00 0.00 1.82
2751 4859 9.713740 GTTTAGAGCATAGATTCACTCATTTTG 57.286 33.333 0.00 0.00 0.00 2.44
2752 4860 6.374565 AGAGCATAGATTCACTCATTTTGC 57.625 37.500 0.00 0.00 0.00 3.68
2753 4861 6.120905 AGAGCATAGATTCACTCATTTTGCT 58.879 36.000 0.00 0.00 40.35 3.91
2754 4862 6.374565 AGCATAGATTCACTCATTTTGCTC 57.625 37.500 0.00 0.00 32.86 4.26
2755 4863 5.298777 AGCATAGATTCACTCATTTTGCTCC 59.701 40.000 0.00 0.00 32.86 4.70
2756 4864 5.066893 GCATAGATTCACTCATTTTGCTCCA 59.933 40.000 0.00 0.00 0.00 3.86
2757 4865 6.238953 GCATAGATTCACTCATTTTGCTCCAT 60.239 38.462 0.00 0.00 0.00 3.41
2758 4866 7.040892 GCATAGATTCACTCATTTTGCTCCATA 60.041 37.037 0.00 0.00 0.00 2.74
2759 4867 9.011095 CATAGATTCACTCATTTTGCTCCATAT 57.989 33.333 0.00 0.00 0.00 1.78
2760 4868 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
2761 4869 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
2762 4870 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
2763 4871 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
2764 4872 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
2765 4873 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
2766 4874 6.017605 CACTCATTTTGCTCCATATGTAGTCC 60.018 42.308 1.24 0.00 0.00 3.85
2767 4875 6.000246 TCATTTTGCTCCATATGTAGTCCA 58.000 37.500 1.24 0.00 0.00 4.02
2768 4876 6.604171 TCATTTTGCTCCATATGTAGTCCAT 58.396 36.000 1.24 0.00 37.58 3.41
2769 4877 7.744733 TCATTTTGCTCCATATGTAGTCCATA 58.255 34.615 1.24 0.00 40.27 2.74
2770 4878 8.385491 TCATTTTGCTCCATATGTAGTCCATAT 58.615 33.333 1.24 0.00 45.67 1.78
2771 4879 9.017509 CATTTTGCTCCATATGTAGTCCATATT 57.982 33.333 1.24 0.00 42.87 1.28
2773 4881 9.725019 TTTTGCTCCATATGTAGTCCATATTAG 57.275 33.333 1.24 0.00 42.87 1.73
2774 4882 8.664669 TTGCTCCATATGTAGTCCATATTAGA 57.335 34.615 1.24 0.00 42.87 2.10
2775 4883 8.664669 TGCTCCATATGTAGTCCATATTAGAA 57.335 34.615 1.24 0.00 42.87 2.10
2776 4884 9.271921 TGCTCCATATGTAGTCCATATTAGAAT 57.728 33.333 1.24 0.00 42.87 2.40
2777 4885 9.757227 GCTCCATATGTAGTCCATATTAGAATC 57.243 37.037 1.24 0.00 42.87 2.52
2807 4915 9.392259 AGAAAAACTTATATTTAGGAACGGAGG 57.608 33.333 0.00 0.00 0.00 4.30
2808 4916 8.515695 AAAAACTTATATTTAGGAACGGAGGG 57.484 34.615 0.00 0.00 0.00 4.30
2809 4917 7.441903 AAACTTATATTTAGGAACGGAGGGA 57.558 36.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 1.242076 GTGCAGCTCATGAAACACCT 58.758 50.000 0.00 0.00 0.00 4.00
118 119 3.535629 CTGCCCGACTGAAGGTGCA 62.536 63.158 0.00 0.00 35.04 4.57
132 133 2.075426 GAAGGTGTTGTGGTGCTGCC 62.075 60.000 0.00 0.00 37.90 4.85
151 152 2.276244 CGCTGCGCTCGTCAATTG 60.276 61.111 9.88 0.00 0.00 2.32
363 385 8.869109 AGTATTTTCCCAATGTTCAGAATCAAA 58.131 29.630 0.00 0.00 0.00 2.69
446 473 5.278660 CCTCAGGTTTTCTTCATTTCTGGTG 60.279 44.000 0.00 0.00 0.00 4.17
499 526 3.194005 AGTTGCGTTTTCTTCTCTGGA 57.806 42.857 0.00 0.00 0.00 3.86
508 535 7.754027 TCTTCTAGTGTAGATAGTTGCGTTTTC 59.246 37.037 0.00 0.00 34.22 2.29
514 541 6.193761 GTCGTCTTCTAGTGTAGATAGTTGC 58.806 44.000 0.00 0.00 34.22 4.17
611 638 6.494835 AGTTATGTGGCTCTTTGGAGAAATTT 59.505 34.615 0.00 0.00 41.86 1.82
771 1881 1.404583 GCAATGGAACTGGATTGGTGC 60.405 52.381 0.00 0.00 0.00 5.01
813 1923 1.355066 GCACTGCGCAGACTAGGAAC 61.355 60.000 42.03 17.53 41.79 3.62
845 1955 8.387190 TGTTGGAGATGCTCTTATGATTTATG 57.613 34.615 0.00 0.00 0.00 1.90
847 1957 7.712639 GTCTGTTGGAGATGCTCTTATGATTTA 59.287 37.037 0.00 0.00 31.63 1.40
849 1959 6.054295 GTCTGTTGGAGATGCTCTTATGATT 58.946 40.000 0.00 0.00 31.63 2.57
851 1961 4.440663 CGTCTGTTGGAGATGCTCTTATGA 60.441 45.833 0.00 0.00 30.78 2.15
852 1962 3.801050 CGTCTGTTGGAGATGCTCTTATG 59.199 47.826 0.00 0.00 30.78 1.90
853 1963 4.052159 CGTCTGTTGGAGATGCTCTTAT 57.948 45.455 0.00 0.00 30.78 1.73
854 1964 3.510388 CGTCTGTTGGAGATGCTCTTA 57.490 47.619 0.00 0.00 30.78 2.10
855 1965 2.376808 CGTCTGTTGGAGATGCTCTT 57.623 50.000 0.00 0.00 30.78 2.85
861 1971 0.620556 ATTGGGCGTCTGTTGGAGAT 59.379 50.000 0.00 0.00 31.63 2.75
864 1974 1.375396 CGATTGGGCGTCTGTTGGA 60.375 57.895 0.00 0.00 0.00 3.53
865 1975 1.361668 CTCGATTGGGCGTCTGTTGG 61.362 60.000 0.00 0.00 0.00 3.77
866 1976 1.970917 GCTCGATTGGGCGTCTGTTG 61.971 60.000 0.00 0.00 0.00 3.33
867 1977 1.741770 GCTCGATTGGGCGTCTGTT 60.742 57.895 0.00 0.00 0.00 3.16
868 1978 2.125512 GCTCGATTGGGCGTCTGT 60.126 61.111 0.00 0.00 0.00 3.41
869 1979 2.892425 GGCTCGATTGGGCGTCTG 60.892 66.667 0.00 0.00 0.00 3.51
870 1980 4.514577 CGGCTCGATTGGGCGTCT 62.515 66.667 10.41 0.00 45.42 4.18
884 1994 2.053029 GAGAATTTAGCGCGCGGC 60.053 61.111 33.06 23.14 44.05 6.53
885 1995 1.273887 CTGAGAATTTAGCGCGCGG 59.726 57.895 33.06 13.66 0.00 6.46
886 1996 1.366961 GCTGAGAATTTAGCGCGCG 60.367 57.895 28.44 28.44 0.00 6.86
887 1997 1.191204 CTAGCTGAGAATTTAGCGCGC 59.809 52.381 26.66 26.66 44.43 6.86
888 1998 1.191204 GCTAGCTGAGAATTTAGCGCG 59.809 52.381 7.70 0.00 44.43 6.86
889 1999 2.033322 GTGCTAGCTGAGAATTTAGCGC 60.033 50.000 17.23 0.00 44.43 5.92
890 2000 2.217393 CGTGCTAGCTGAGAATTTAGCG 59.783 50.000 17.23 0.15 44.43 4.26
891 2001 2.033322 GCGTGCTAGCTGAGAATTTAGC 60.033 50.000 17.23 0.00 39.11 3.09
892 2002 3.000724 GTGCGTGCTAGCTGAGAATTTAG 59.999 47.826 17.23 0.00 38.13 1.85
893 2003 2.930040 GTGCGTGCTAGCTGAGAATTTA 59.070 45.455 17.23 0.00 38.13 1.40
894 2004 1.734465 GTGCGTGCTAGCTGAGAATTT 59.266 47.619 17.23 0.00 38.13 1.82
895 2005 1.338105 TGTGCGTGCTAGCTGAGAATT 60.338 47.619 17.23 0.00 38.13 2.17
896 2006 0.247460 TGTGCGTGCTAGCTGAGAAT 59.753 50.000 17.23 0.00 38.13 2.40
897 2007 0.247460 ATGTGCGTGCTAGCTGAGAA 59.753 50.000 17.23 0.00 38.13 2.87
898 2008 0.179127 GATGTGCGTGCTAGCTGAGA 60.179 55.000 17.23 0.00 38.13 3.27
899 2009 1.477826 CGATGTGCGTGCTAGCTGAG 61.478 60.000 17.23 8.21 38.13 3.35
900 2010 1.517039 CGATGTGCGTGCTAGCTGA 60.517 57.895 17.23 0.00 38.13 4.26
901 2011 3.001067 CGATGTGCGTGCTAGCTG 58.999 61.111 17.23 9.70 38.13 4.24
923 2033 2.066999 AATCGAGGAGGAGGCACCC 61.067 63.158 0.00 0.00 40.05 4.61
1062 2186 2.289532 GCTGAGGGTCAGTGCTCCT 61.290 63.158 5.84 4.11 45.94 3.69
1212 2354 1.300233 GGCGTGATCGGTGATCTCC 60.300 63.158 3.58 3.58 39.56 3.71
1253 2395 0.904649 ATCGTGGATGAGTTGGCTGA 59.095 50.000 0.00 0.00 0.00 4.26
1414 2571 1.120530 AATTCGTAGCCAGGGACGAT 58.879 50.000 3.50 0.00 46.56 3.73
1789 2956 5.763204 TCAATTAGGAATGGTTTATCTCCGC 59.237 40.000 0.00 0.00 32.91 5.54
1797 2964 6.882140 TCGTGTACATCAATTAGGAATGGTTT 59.118 34.615 0.00 0.00 0.00 3.27
1806 2973 8.135529 TCTATCACCTTCGTGTACATCAATTAG 58.864 37.037 0.00 0.00 41.09 1.73
1810 2977 5.907866 TCTATCACCTTCGTGTACATCAA 57.092 39.130 0.00 0.00 41.09 2.57
1814 2981 6.600427 TGAACTATCTATCACCTTCGTGTACA 59.400 38.462 0.00 0.00 41.09 2.90
1829 2996 9.749340 TCACCTTCGGAATATATGAACTATCTA 57.251 33.333 0.00 0.00 0.00 1.98
1830 2997 8.651589 TCACCTTCGGAATATATGAACTATCT 57.348 34.615 0.00 0.00 0.00 1.98
1831 2998 9.360093 CTTCACCTTCGGAATATATGAACTATC 57.640 37.037 0.00 0.00 0.00 2.08
1832 2999 9.090103 TCTTCACCTTCGGAATATATGAACTAT 57.910 33.333 0.00 0.00 0.00 2.12
1833 3000 8.473358 TCTTCACCTTCGGAATATATGAACTA 57.527 34.615 0.00 0.00 0.00 2.24
1834 3001 7.361457 TCTTCACCTTCGGAATATATGAACT 57.639 36.000 0.00 0.00 0.00 3.01
1835 3002 8.608844 ATTCTTCACCTTCGGAATATATGAAC 57.391 34.615 0.00 0.00 0.00 3.18
1844 3011 9.052759 GCTAATTATAATTCTTCACCTTCGGAA 57.947 33.333 13.95 0.00 0.00 4.30
1845 3012 7.660208 GGCTAATTATAATTCTTCACCTTCGGA 59.340 37.037 13.95 0.00 0.00 4.55
1846 3013 7.444183 TGGCTAATTATAATTCTTCACCTTCGG 59.556 37.037 13.95 0.00 0.00 4.30
1848 3015 9.952188 GTTGGCTAATTATAATTCTTCACCTTC 57.048 33.333 13.95 4.84 0.00 3.46
1849 3016 8.914011 GGTTGGCTAATTATAATTCTTCACCTT 58.086 33.333 13.95 0.00 0.00 3.50
1850 3017 7.505923 GGGTTGGCTAATTATAATTCTTCACCT 59.494 37.037 13.95 0.00 0.00 4.00
1853 3020 8.278639 TGAGGGTTGGCTAATTATAATTCTTCA 58.721 33.333 13.95 7.53 0.00 3.02
1854 3021 8.691661 TGAGGGTTGGCTAATTATAATTCTTC 57.308 34.615 13.95 5.27 0.00 2.87
1856 3023 6.717084 GCTGAGGGTTGGCTAATTATAATTCT 59.283 38.462 13.95 3.10 0.00 2.40
1858 3025 6.372931 TGCTGAGGGTTGGCTAATTATAATT 58.627 36.000 14.86 14.86 0.00 1.40
1859 3026 5.952387 TGCTGAGGGTTGGCTAATTATAAT 58.048 37.500 0.00 0.00 0.00 1.28
1860 3027 5.104109 ACTGCTGAGGGTTGGCTAATTATAA 60.104 40.000 0.00 0.00 0.00 0.98
1861 3028 4.412199 ACTGCTGAGGGTTGGCTAATTATA 59.588 41.667 0.00 0.00 0.00 0.98
1863 3030 2.576191 ACTGCTGAGGGTTGGCTAATTA 59.424 45.455 0.00 0.00 0.00 1.40
1864 3031 1.355720 ACTGCTGAGGGTTGGCTAATT 59.644 47.619 0.00 0.00 0.00 1.40
1865 3032 0.995024 ACTGCTGAGGGTTGGCTAAT 59.005 50.000 0.00 0.00 0.00 1.73
1866 3033 1.651737 TACTGCTGAGGGTTGGCTAA 58.348 50.000 0.00 0.00 0.00 3.09
1867 3034 1.486310 CATACTGCTGAGGGTTGGCTA 59.514 52.381 0.00 0.00 0.00 3.93
1868 3035 0.254178 CATACTGCTGAGGGTTGGCT 59.746 55.000 0.00 0.00 0.00 4.75
1873 3564 3.235200 GGATCTACATACTGCTGAGGGT 58.765 50.000 0.00 0.00 0.00 4.34
1875 3566 3.234353 TGGGATCTACATACTGCTGAGG 58.766 50.000 0.00 0.00 0.00 3.86
1876 3567 5.394005 GCTATGGGATCTACATACTGCTGAG 60.394 48.000 0.00 0.77 0.00 3.35
1877 3568 4.464244 GCTATGGGATCTACATACTGCTGA 59.536 45.833 0.00 0.00 0.00 4.26
1884 3575 4.930696 TCTTCGGCTATGGGATCTACATA 58.069 43.478 9.32 9.32 0.00 2.29
1889 3580 2.830923 CTCATCTTCGGCTATGGGATCT 59.169 50.000 0.00 0.00 0.00 2.75
1890 3581 2.676463 GCTCATCTTCGGCTATGGGATC 60.676 54.545 0.00 0.00 0.00 3.36
1892 3583 0.681733 GCTCATCTTCGGCTATGGGA 59.318 55.000 0.00 0.00 0.00 4.37
1893 3584 0.394192 TGCTCATCTTCGGCTATGGG 59.606 55.000 0.00 0.00 0.00 4.00
1895 3586 2.808523 TCTGCTCATCTTCGGCTATG 57.191 50.000 0.00 0.00 0.00 2.23
1896 3587 2.094803 CGATCTGCTCATCTTCGGCTAT 60.095 50.000 0.00 0.00 0.00 2.97
1897 3588 1.268079 CGATCTGCTCATCTTCGGCTA 59.732 52.381 0.00 0.00 0.00 3.93
1898 3589 0.031857 CGATCTGCTCATCTTCGGCT 59.968 55.000 0.00 0.00 0.00 5.52
1900 3591 0.249197 TGCGATCTGCTCATCTTCGG 60.249 55.000 10.16 0.00 46.63 4.30
1903 3594 2.904697 TGATGCGATCTGCTCATCTT 57.095 45.000 10.16 0.00 46.63 2.40
1904 3595 2.299297 TCATGATGCGATCTGCTCATCT 59.701 45.455 14.74 3.00 46.63 2.90
1906 3597 2.299297 TCTCATGATGCGATCTGCTCAT 59.701 45.455 0.00 11.97 46.63 2.90
1907 3598 1.684983 TCTCATGATGCGATCTGCTCA 59.315 47.619 0.00 10.66 46.63 4.26
1908 3599 2.060284 GTCTCATGATGCGATCTGCTC 58.940 52.381 0.00 6.58 46.63 4.26
1909 3600 1.602416 CGTCTCATGATGCGATCTGCT 60.602 52.381 12.02 0.00 46.63 4.24
1910 3601 0.782981 CGTCTCATGATGCGATCTGC 59.217 55.000 12.02 3.07 46.70 4.26
1911 3602 1.416373 CCGTCTCATGATGCGATCTG 58.584 55.000 17.16 0.00 0.00 2.90
1912 3603 0.316522 CCCGTCTCATGATGCGATCT 59.683 55.000 17.16 0.00 0.00 2.75
1913 3604 1.287730 GCCCGTCTCATGATGCGATC 61.288 60.000 17.16 7.37 0.00 3.69
1914 3605 1.301244 GCCCGTCTCATGATGCGAT 60.301 57.895 17.16 0.00 0.00 4.58
1915 3606 2.106938 GCCCGTCTCATGATGCGA 59.893 61.111 17.16 0.32 0.00 5.10
1917 3608 3.643978 GCGCCCGTCTCATGATGC 61.644 66.667 0.00 0.00 0.00 3.91
1918 3609 3.333189 CGCGCCCGTCTCATGATG 61.333 66.667 0.00 0.00 0.00 3.07
1919 3610 2.369257 ATTCGCGCCCGTCTCATGAT 62.369 55.000 0.00 0.00 35.54 2.45
1920 3611 2.954020 GATTCGCGCCCGTCTCATGA 62.954 60.000 0.00 0.00 35.54 3.07
1923 3614 2.501223 AAAGATTCGCGCCCGTCTCA 62.501 55.000 0.00 0.00 35.54 3.27
1924 3615 1.753468 GAAAGATTCGCGCCCGTCTC 61.753 60.000 0.00 0.00 35.54 3.36
1925 3616 1.810030 GAAAGATTCGCGCCCGTCT 60.810 57.895 0.00 0.00 35.54 4.18
1930 3621 2.542766 TTTCATGAAAGATTCGCGCC 57.457 45.000 16.91 0.00 0.00 6.53
1931 3622 4.558470 TGAATTTTCATGAAAGATTCGCGC 59.442 37.500 27.83 17.62 34.44 6.86
1932 3623 6.615809 TTGAATTTTCATGAAAGATTCGCG 57.384 33.333 27.83 0.00 37.00 5.87
1934 3625 8.149661 GTCGTTTGAATTTTCATGAAAGATTCG 58.850 33.333 27.83 22.54 37.00 3.34
1935 3626 9.185192 AGTCGTTTGAATTTTCATGAAAGATTC 57.815 29.630 27.54 27.54 37.00 2.52
1936 3627 8.971321 CAGTCGTTTGAATTTTCATGAAAGATT 58.029 29.630 19.64 19.59 37.00 2.40
1938 3629 7.431960 CACAGTCGTTTGAATTTTCATGAAAGA 59.568 33.333 19.64 12.01 37.00 2.52
1939 3630 7.220683 ACACAGTCGTTTGAATTTTCATGAAAG 59.779 33.333 19.64 7.14 37.00 2.62
1940 3631 7.009083 CACACAGTCGTTTGAATTTTCATGAAA 59.991 33.333 16.91 16.91 37.00 2.69
1941 3632 6.471841 CACACAGTCGTTTGAATTTTCATGAA 59.528 34.615 3.38 3.38 37.00 2.57
1942 3633 5.970612 CACACAGTCGTTTGAATTTTCATGA 59.029 36.000 0.00 0.00 37.00 3.07
1943 3634 5.970612 TCACACAGTCGTTTGAATTTTCATG 59.029 36.000 0.00 0.00 37.00 3.07
1944 3635 6.130298 TCACACAGTCGTTTGAATTTTCAT 57.870 33.333 0.00 0.00 37.00 2.57
1945 3636 5.553290 TCACACAGTCGTTTGAATTTTCA 57.447 34.783 0.00 0.00 28.93 2.69
1946 3637 7.449934 AAATCACACAGTCGTTTGAATTTTC 57.550 32.000 0.00 0.00 35.54 2.29
1947 3638 7.201513 CCAAAATCACACAGTCGTTTGAATTTT 60.202 33.333 0.00 0.00 34.31 1.82
1948 3639 6.255453 CCAAAATCACACAGTCGTTTGAATTT 59.745 34.615 0.00 0.00 36.04 1.82
1949 3640 5.748152 CCAAAATCACACAGTCGTTTGAATT 59.252 36.000 0.00 0.00 35.54 2.17
1950 3641 5.163561 ACCAAAATCACACAGTCGTTTGAAT 60.164 36.000 0.00 0.00 35.54 2.57
1951 3642 4.156922 ACCAAAATCACACAGTCGTTTGAA 59.843 37.500 0.00 0.00 35.54 2.69
1953 3644 4.027572 ACCAAAATCACACAGTCGTTTG 57.972 40.909 0.00 0.00 0.00 2.93
1954 3645 4.035909 GGTACCAAAATCACACAGTCGTTT 59.964 41.667 7.15 0.00 0.00 3.60
1955 3646 3.562557 GGTACCAAAATCACACAGTCGTT 59.437 43.478 7.15 0.00 0.00 3.85
1956 3647 3.135994 GGTACCAAAATCACACAGTCGT 58.864 45.455 7.15 0.00 0.00 4.34
1957 3648 2.156891 CGGTACCAAAATCACACAGTCG 59.843 50.000 13.54 0.00 0.00 4.18
1959 3650 2.500229 CCGGTACCAAAATCACACAGT 58.500 47.619 13.54 0.00 0.00 3.55
1960 3651 1.199097 GCCGGTACCAAAATCACACAG 59.801 52.381 13.54 0.00 0.00 3.66
1967 3874 1.560866 TACCCGGCCGGTACCAAAAT 61.561 55.000 40.52 18.00 45.97 1.82
1968 3875 2.219875 TACCCGGCCGGTACCAAAA 61.220 57.895 40.52 15.91 45.97 2.44
1976 3883 3.932483 GGTATGGTACCCGGCCGG 61.932 72.222 37.99 37.99 43.18 6.13
1986 3893 9.507329 CAACTATATAATGCTTTGAGGTATGGT 57.493 33.333 0.00 0.00 0.00 3.55
1987 3894 8.454106 GCAACTATATAATGCTTTGAGGTATGG 58.546 37.037 11.21 0.00 37.12 2.74
1992 3899 6.569226 GCCTGCAACTATATAATGCTTTGAGG 60.569 42.308 16.76 15.36 40.66 3.86
1993 3900 6.206243 AGCCTGCAACTATATAATGCTTTGAG 59.794 38.462 16.76 8.82 40.66 3.02
1994 3901 6.064060 AGCCTGCAACTATATAATGCTTTGA 58.936 36.000 16.76 1.75 40.66 2.69
2006 3913 9.813826 AATATCCTAATAAAAGCCTGCAACTAT 57.186 29.630 0.00 0.00 0.00 2.12
2007 3914 9.284968 GAATATCCTAATAAAAGCCTGCAACTA 57.715 33.333 0.00 0.00 0.00 2.24
2008 3915 7.231519 GGAATATCCTAATAAAAGCCTGCAACT 59.768 37.037 0.00 0.00 32.53 3.16
2009 3916 7.371159 GGAATATCCTAATAAAAGCCTGCAAC 58.629 38.462 0.00 0.00 32.53 4.17
2010 3917 6.206634 CGGAATATCCTAATAAAAGCCTGCAA 59.793 38.462 0.00 0.00 33.30 4.08
2011 3918 5.705441 CGGAATATCCTAATAAAAGCCTGCA 59.295 40.000 0.00 0.00 33.30 4.41
2012 3919 5.705905 ACGGAATATCCTAATAAAAGCCTGC 59.294 40.000 0.00 0.00 33.30 4.85
2013 3920 7.162082 AGACGGAATATCCTAATAAAAGCCTG 58.838 38.462 0.00 0.00 33.30 4.85
2014 3921 7.317722 AGACGGAATATCCTAATAAAAGCCT 57.682 36.000 0.00 0.00 33.30 4.58
2016 3923 9.708092 AACTAGACGGAATATCCTAATAAAAGC 57.292 33.333 0.00 0.00 33.30 3.51
2022 3929 9.090103 TGAATCAACTAGACGGAATATCCTAAT 57.910 33.333 0.00 0.00 33.30 1.73
2023 3930 8.358148 GTGAATCAACTAGACGGAATATCCTAA 58.642 37.037 0.00 0.00 33.30 2.69
2024 3931 7.308408 CGTGAATCAACTAGACGGAATATCCTA 60.308 40.741 0.00 0.00 33.30 2.94
2025 3932 6.515200 CGTGAATCAACTAGACGGAATATCCT 60.515 42.308 0.00 0.00 33.30 3.24
2026 3933 5.629849 CGTGAATCAACTAGACGGAATATCC 59.370 44.000 0.00 0.00 0.00 2.59
2027 3934 6.677027 CGTGAATCAACTAGACGGAATATC 57.323 41.667 0.00 0.00 0.00 1.63
2034 3941 1.278238 GGCCGTGAATCAACTAGACG 58.722 55.000 0.00 0.00 0.00 4.18
2035 3942 2.271800 CTGGCCGTGAATCAACTAGAC 58.728 52.381 0.00 0.00 0.00 2.59
2036 3943 1.899814 ACTGGCCGTGAATCAACTAGA 59.100 47.619 0.00 0.00 0.00 2.43
2037 3944 2.002586 CACTGGCCGTGAATCAACTAG 58.997 52.381 19.03 0.00 46.81 2.57
2038 3945 1.943968 GCACTGGCCGTGAATCAACTA 60.944 52.381 25.37 0.00 46.81 2.24
2051 3958 2.195567 ACACCACACATGCACTGGC 61.196 57.895 0.00 0.00 41.68 4.85
2069 3976 2.100031 GTCGATGTCACGCATGGCA 61.100 57.895 0.00 0.00 46.67 4.92
2072 3979 1.585668 GAAGAGTCGATGTCACGCATG 59.414 52.381 0.00 0.00 38.06 4.06
2073 3980 1.202348 TGAAGAGTCGATGTCACGCAT 59.798 47.619 0.00 0.00 41.24 4.73
2074 3981 0.596082 TGAAGAGTCGATGTCACGCA 59.404 50.000 0.00 0.00 0.00 5.24
2077 3984 4.051922 AGTGTTTGAAGAGTCGATGTCAC 58.948 43.478 0.00 0.00 0.00 3.67
2080 3987 4.051922 GTCAGTGTTTGAAGAGTCGATGT 58.948 43.478 0.00 0.00 37.61 3.06
2081 3988 4.051237 TGTCAGTGTTTGAAGAGTCGATG 58.949 43.478 0.00 0.00 37.61 3.84
2082 3989 4.051922 GTGTCAGTGTTTGAAGAGTCGAT 58.948 43.478 0.00 0.00 37.61 3.59
2083 3990 3.444916 GTGTCAGTGTTTGAAGAGTCGA 58.555 45.455 0.00 0.00 37.61 4.20
2084 3991 2.540101 GGTGTCAGTGTTTGAAGAGTCG 59.460 50.000 0.00 0.00 37.61 4.18
2087 3994 2.917933 TGGGTGTCAGTGTTTGAAGAG 58.082 47.619 0.00 0.00 37.61 2.85
2088 3995 3.576078 ATGGGTGTCAGTGTTTGAAGA 57.424 42.857 0.00 0.00 37.61 2.87
2089 3996 5.067153 TGTTTATGGGTGTCAGTGTTTGAAG 59.933 40.000 0.00 0.00 37.61 3.02
2090 3997 4.950475 TGTTTATGGGTGTCAGTGTTTGAA 59.050 37.500 0.00 0.00 37.61 2.69
2091 3998 4.336993 GTGTTTATGGGTGTCAGTGTTTGA 59.663 41.667 0.00 0.00 0.00 2.69
2092 3999 4.499019 GGTGTTTATGGGTGTCAGTGTTTG 60.499 45.833 0.00 0.00 0.00 2.93
2093 4000 3.634910 GGTGTTTATGGGTGTCAGTGTTT 59.365 43.478 0.00 0.00 0.00 2.83
2094 4001 3.219281 GGTGTTTATGGGTGTCAGTGTT 58.781 45.455 0.00 0.00 0.00 3.32
2095 4002 2.173782 TGGTGTTTATGGGTGTCAGTGT 59.826 45.455 0.00 0.00 0.00 3.55
2096 4003 2.552315 GTGGTGTTTATGGGTGTCAGTG 59.448 50.000 0.00 0.00 0.00 3.66
2097 4004 2.488347 GGTGGTGTTTATGGGTGTCAGT 60.488 50.000 0.00 0.00 0.00 3.41
2098 4005 2.159382 GGTGGTGTTTATGGGTGTCAG 58.841 52.381 0.00 0.00 0.00 3.51
2099 4006 1.777878 AGGTGGTGTTTATGGGTGTCA 59.222 47.619 0.00 0.00 0.00 3.58
2100 4007 2.579410 AGGTGGTGTTTATGGGTGTC 57.421 50.000 0.00 0.00 0.00 3.67
2101 4008 2.962421 CAAAGGTGGTGTTTATGGGTGT 59.038 45.455 0.00 0.00 0.00 4.16
2102 4009 2.298729 CCAAAGGTGGTGTTTATGGGTG 59.701 50.000 0.00 0.00 40.42 4.61
2103 4010 2.178106 TCCAAAGGTGGTGTTTATGGGT 59.822 45.455 0.00 0.00 46.11 4.51
2104 4011 2.883026 TCCAAAGGTGGTGTTTATGGG 58.117 47.619 0.00 0.00 46.11 4.00
2105 4012 5.261216 ACTATCCAAAGGTGGTGTTTATGG 58.739 41.667 0.00 0.00 46.11 2.74
2106 4013 6.834168 AACTATCCAAAGGTGGTGTTTATG 57.166 37.500 0.00 0.00 46.11 1.90
2107 4014 7.924541 TCTAACTATCCAAAGGTGGTGTTTAT 58.075 34.615 0.00 0.00 46.11 1.40
2108 4015 7.319052 TCTAACTATCCAAAGGTGGTGTTTA 57.681 36.000 0.00 0.00 46.11 2.01
2109 4016 6.195600 TCTAACTATCCAAAGGTGGTGTTT 57.804 37.500 0.00 0.00 46.11 2.83
2110 4017 5.836024 TCTAACTATCCAAAGGTGGTGTT 57.164 39.130 0.00 1.00 46.11 3.32
2136 4043 7.059788 TCTAGATGAGAGCTAAACACATCTCT 58.940 38.462 14.32 5.64 43.93 3.10
2137 4044 7.270757 TCTAGATGAGAGCTAAACACATCTC 57.729 40.000 14.32 3.38 43.93 2.75
2140 4054 7.594351 TCATCTAGATGAGAGCTAAACACAT 57.406 36.000 27.93 0.00 42.42 3.21
2172 4086 5.036117 TGCAGGAGTTAGATGGGAAATAC 57.964 43.478 0.00 0.00 0.00 1.89
2176 4090 5.912149 ATAATGCAGGAGTTAGATGGGAA 57.088 39.130 0.00 0.00 0.00 3.97
2179 4093 5.624159 TCCAATAATGCAGGAGTTAGATGG 58.376 41.667 0.00 0.00 0.00 3.51
2185 4099 5.163622 CGTCAAATCCAATAATGCAGGAGTT 60.164 40.000 0.00 0.00 40.02 3.01
2192 4106 3.332761 TCGCGTCAAATCCAATAATGC 57.667 42.857 5.77 0.00 0.00 3.56
2197 4111 3.186409 CGGATATTCGCGTCAAATCCAAT 59.814 43.478 22.53 10.54 36.68 3.16
2206 4120 2.624316 TCCATACGGATATTCGCGTC 57.376 50.000 5.77 0.00 35.91 5.19
2217 4131 2.154462 GGGAGCAAATCATCCATACGG 58.846 52.381 0.00 0.00 37.33 4.02
2223 4137 4.074970 ACGAATATGGGAGCAAATCATCC 58.925 43.478 0.00 0.00 34.64 3.51
2230 4144 1.472552 CGGACACGAATATGGGAGCAA 60.473 52.381 0.00 0.00 44.60 3.91
2231 4145 0.104120 CGGACACGAATATGGGAGCA 59.896 55.000 0.00 0.00 44.60 4.26
2232 4146 0.104304 ACGGACACGAATATGGGAGC 59.896 55.000 0.00 0.00 44.60 4.70
2236 4150 1.136305 AGTCCACGGACACGAATATGG 59.864 52.381 18.21 0.00 46.76 2.74
2239 4153 0.528924 CCAGTCCACGGACACGAATA 59.471 55.000 18.21 0.00 46.76 1.75
2242 4156 2.520020 ACCAGTCCACGGACACGA 60.520 61.111 18.21 0.00 46.76 4.35
2246 4160 1.596895 GAGGAGACCAGTCCACGGAC 61.597 65.000 8.23 8.23 44.86 4.79
2277 4192 1.675552 CCAAACCGGACATGGTATCC 58.324 55.000 9.46 0.00 42.89 2.59
2282 4197 0.676782 GACTCCCAAACCGGACATGG 60.677 60.000 9.46 13.28 36.56 3.66
2283 4198 0.036164 TGACTCCCAAACCGGACATG 59.964 55.000 9.46 3.36 36.56 3.21
2284 4199 0.768622 TTGACTCCCAAACCGGACAT 59.231 50.000 9.46 0.00 36.56 3.06
2290 4205 3.263425 TCTCCTACATTGACTCCCAAACC 59.737 47.826 0.00 0.00 38.43 3.27
2293 4208 3.118261 GCATCTCCTACATTGACTCCCAA 60.118 47.826 0.00 0.00 39.41 4.12
2296 4211 2.224402 GGGCATCTCCTACATTGACTCC 60.224 54.545 0.00 0.00 34.39 3.85
2297 4212 2.703007 AGGGCATCTCCTACATTGACTC 59.297 50.000 0.00 0.00 34.92 3.36
2300 4215 4.907269 TGATAAGGGCATCTCCTACATTGA 59.093 41.667 0.00 0.00 35.80 2.57
2303 4218 4.497516 ACTGATAAGGGCATCTCCTACAT 58.502 43.478 0.00 0.00 35.80 2.29
2304 4219 3.928754 ACTGATAAGGGCATCTCCTACA 58.071 45.455 0.00 0.00 35.80 2.74
2307 4222 3.387962 TCAACTGATAAGGGCATCTCCT 58.612 45.455 0.00 0.00 39.17 3.69
2313 4228 6.662865 TTTTTCATTCAACTGATAAGGGCA 57.337 33.333 0.00 0.00 0.00 5.36
2327 4242 5.682234 ACCCCCATCTTCATTTTTCATTC 57.318 39.130 0.00 0.00 0.00 2.67
2349 4264 0.181114 CTCGATCTGCAATCCCCCAA 59.819 55.000 0.00 0.00 0.00 4.12
2351 4266 1.072159 CCTCGATCTGCAATCCCCC 59.928 63.158 0.00 0.00 0.00 5.40
2370 4285 5.417580 ACAGTACAGAACATTGTGGTTGTTT 59.582 36.000 0.00 0.00 37.43 2.83
2376 4291 7.173218 AGTTTATGACAGTACAGAACATTGTGG 59.827 37.037 0.00 0.00 32.56 4.17
2398 4313 9.988350 CAATCTCAAAGCAACGTATTATAGTTT 57.012 29.630 0.00 0.00 0.00 2.66
2402 4317 7.786178 AGCAATCTCAAAGCAACGTATTATA 57.214 32.000 0.00 0.00 0.00 0.98
2403 4318 6.683974 AGCAATCTCAAAGCAACGTATTAT 57.316 33.333 0.00 0.00 0.00 1.28
2404 4319 6.314018 CAAGCAATCTCAAAGCAACGTATTA 58.686 36.000 0.00 0.00 0.00 0.98
2405 4320 5.156355 CAAGCAATCTCAAAGCAACGTATT 58.844 37.500 0.00 0.00 0.00 1.89
2406 4321 4.379813 CCAAGCAATCTCAAAGCAACGTAT 60.380 41.667 0.00 0.00 0.00 3.06
2416 4331 0.332632 CCCTCCCCAAGCAATCTCAA 59.667 55.000 0.00 0.00 0.00 3.02
2428 4343 0.695347 CATGAATCTAGCCCCTCCCC 59.305 60.000 0.00 0.00 0.00 4.81
2449 4364 2.754658 AGCTTGCAGCATGGCTCC 60.755 61.111 15.18 0.00 45.56 4.70
2450 4365 2.799371 GAGCTTGCAGCATGGCTC 59.201 61.111 25.24 25.24 45.56 4.70
2451 4366 3.132139 CGAGCTTGCAGCATGGCT 61.132 61.111 19.37 19.37 45.56 4.75
2452 4367 4.189188 CCGAGCTTGCAGCATGGC 62.189 66.667 10.17 10.92 45.56 4.40
2453 4368 2.437180 TCCGAGCTTGCAGCATGG 60.437 61.111 10.17 10.28 45.56 3.66
2454 4369 1.303799 AACTCCGAGCTTGCAGCATG 61.304 55.000 0.00 0.00 45.56 4.06
2455 4370 1.002868 AACTCCGAGCTTGCAGCAT 60.003 52.632 0.00 0.00 45.56 3.79
2456 4371 1.962822 CAACTCCGAGCTTGCAGCA 60.963 57.895 10.16 0.00 45.56 4.41
2457 4372 1.230635 TTCAACTCCGAGCTTGCAGC 61.231 55.000 0.00 0.47 42.84 5.25
2458 4373 1.446907 ATTCAACTCCGAGCTTGCAG 58.553 50.000 0.00 0.00 0.00 4.41
2462 4377 3.253432 GTCCAAAATTCAACTCCGAGCTT 59.747 43.478 0.00 0.00 0.00 3.74
2475 4390 1.076350 TCCCCACGATGGTCCAAAATT 59.924 47.619 0.00 0.00 35.17 1.82
2478 4393 0.034574 CATCCCCACGATGGTCCAAA 60.035 55.000 0.00 0.00 44.14 3.28
2486 4401 4.510167 AAGAAAGAATCATCCCCACGAT 57.490 40.909 0.00 0.00 0.00 3.73
2487 4402 4.261801 GAAAGAAAGAATCATCCCCACGA 58.738 43.478 0.00 0.00 0.00 4.35
2488 4403 3.063997 CGAAAGAAAGAATCATCCCCACG 59.936 47.826 0.00 0.00 0.00 4.94
2496 4603 4.635765 CCTGCATACCGAAAGAAAGAATCA 59.364 41.667 0.00 0.00 0.00 2.57
2527 4634 7.615403 ACACACATGTACTTAGACATTCAGAT 58.385 34.615 0.00 0.00 37.99 2.90
2530 4637 9.797556 GTATACACACATGTACTTAGACATTCA 57.202 33.333 0.00 0.00 44.11 2.57
2555 4662 7.218614 TGGAGATCAATTGCAAAAGAAAATGT 58.781 30.769 1.71 0.00 0.00 2.71
2599 4706 1.747355 CTACAAATTCAGGCTGCCCAG 59.253 52.381 16.57 8.86 0.00 4.45
2601 4708 0.457443 GCTACAAATTCAGGCTGCCC 59.543 55.000 16.57 0.00 0.00 5.36
2716 4824 9.851686 TGAATCTATGCTCTAAACCATGTTTAT 57.148 29.630 0.33 0.00 0.00 1.40
2717 4825 9.109393 GTGAATCTATGCTCTAAACCATGTTTA 57.891 33.333 0.00 0.09 0.00 2.01
2718 4826 7.831193 AGTGAATCTATGCTCTAAACCATGTTT 59.169 33.333 0.00 0.00 0.00 2.83
2719 4827 7.341805 AGTGAATCTATGCTCTAAACCATGTT 58.658 34.615 0.00 0.00 0.00 2.71
2720 4828 6.893583 AGTGAATCTATGCTCTAAACCATGT 58.106 36.000 0.00 0.00 0.00 3.21
2721 4829 6.988580 TGAGTGAATCTATGCTCTAAACCATG 59.011 38.462 0.00 0.00 0.00 3.66
2722 4830 7.129457 TGAGTGAATCTATGCTCTAAACCAT 57.871 36.000 0.00 0.00 0.00 3.55
2723 4831 6.544928 TGAGTGAATCTATGCTCTAAACCA 57.455 37.500 0.00 0.00 0.00 3.67
2724 4832 8.443953 AAATGAGTGAATCTATGCTCTAAACC 57.556 34.615 0.00 0.00 0.00 3.27
2725 4833 9.713740 CAAAATGAGTGAATCTATGCTCTAAAC 57.286 33.333 0.00 0.00 0.00 2.01
2726 4834 8.400947 GCAAAATGAGTGAATCTATGCTCTAAA 58.599 33.333 0.00 0.00 0.00 1.85
2727 4835 7.772292 AGCAAAATGAGTGAATCTATGCTCTAA 59.228 33.333 0.00 0.00 0.00 2.10
2728 4836 7.278135 AGCAAAATGAGTGAATCTATGCTCTA 58.722 34.615 0.00 0.00 0.00 2.43
2729 4837 6.120905 AGCAAAATGAGTGAATCTATGCTCT 58.879 36.000 0.00 0.00 0.00 4.09
2730 4838 6.374565 AGCAAAATGAGTGAATCTATGCTC 57.625 37.500 0.00 0.00 0.00 4.26
2731 4839 5.298777 GGAGCAAAATGAGTGAATCTATGCT 59.701 40.000 0.00 0.00 0.00 3.79
2732 4840 5.066893 TGGAGCAAAATGAGTGAATCTATGC 59.933 40.000 0.00 0.00 0.00 3.14
2733 4841 6.688637 TGGAGCAAAATGAGTGAATCTATG 57.311 37.500 0.00 0.00 0.00 2.23
2734 4842 9.011095 CATATGGAGCAAAATGAGTGAATCTAT 57.989 33.333 0.00 0.00 0.00 1.98
2735 4843 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
2736 4844 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
2737 4845 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
2738 4846 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
2739 4847 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
2740 4848 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
2741 4849 6.017605 GGACTACATATGGAGCAAAATGAGTG 60.018 42.308 15.30 0.00 0.00 3.51
2742 4850 6.058183 GGACTACATATGGAGCAAAATGAGT 58.942 40.000 15.30 0.00 0.00 3.41
2743 4851 6.057533 TGGACTACATATGGAGCAAAATGAG 58.942 40.000 15.30 0.00 0.00 2.90
2744 4852 6.000246 TGGACTACATATGGAGCAAAATGA 58.000 37.500 15.30 0.00 0.00 2.57
2745 4853 6.889301 ATGGACTACATATGGAGCAAAATG 57.111 37.500 15.30 0.00 38.26 2.32
2781 4889 9.392259 CCTCCGTTCCTAAATATAAGTTTTTCT 57.608 33.333 0.00 0.00 0.00 2.52
2782 4890 8.618677 CCCTCCGTTCCTAAATATAAGTTTTTC 58.381 37.037 0.00 0.00 0.00 2.29
2783 4891 8.330993 TCCCTCCGTTCCTAAATATAAGTTTTT 58.669 33.333 0.00 0.00 0.00 1.94
2784 4892 7.864770 TCCCTCCGTTCCTAAATATAAGTTTT 58.135 34.615 0.00 0.00 0.00 2.43
2785 4893 7.441903 TCCCTCCGTTCCTAAATATAAGTTT 57.558 36.000 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.