Multiple sequence alignment - TraesCS3D01G450500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G450500 chr3D 100.000 3196 0 0 1 3196 558726374 558723179 0.000000e+00 5903
1 TraesCS3D01G450500 chr3D 76.119 402 50 10 1206 1598 558563388 558563024 5.480000e-38 169
2 TraesCS3D01G450500 chr3D 95.604 91 4 0 1 91 558732296 558732206 2.570000e-31 147
3 TraesCS3D01G450500 chr3B 95.684 2456 87 14 423 2869 741504713 741502268 0.000000e+00 3930
4 TraesCS3D01G450500 chr3B 86.628 344 26 16 99 431 741561656 741561322 2.340000e-96 363
5 TraesCS3D01G450500 chr3A 93.254 2594 124 29 167 2743 695044372 695041813 0.000000e+00 3773
6 TraesCS3D01G450500 chr3A 82.393 443 63 7 1625 2062 694969606 694969174 3.890000e-99 372
7 TraesCS3D01G450500 chr3A 83.849 291 34 9 2887 3173 504552549 504552268 6.800000e-67 265
8 TraesCS3D01G450500 chr3A 76.355 406 50 12 1204 1598 694970420 694970050 3.280000e-40 176
9 TraesCS3D01G450500 chr3A 91.045 134 3 4 2737 2869 695027998 695027873 4.240000e-39 172
10 TraesCS3D01G450500 chr4D 86.774 310 32 5 2867 3172 4091947 4091643 1.420000e-88 337
11 TraesCS3D01G450500 chr4D 85.517 290 28 9 2887 3172 319249186 319248907 1.120000e-74 291
12 TraesCS3D01G450500 chr4B 86.441 295 29 8 2883 3172 396703992 396703704 2.390000e-81 313
13 TraesCS3D01G450500 chr5D 84.295 312 41 6 2866 3173 521720839 521721146 6.700000e-77 298
14 TraesCS3D01G450500 chr5D 84.615 299 33 9 2877 3172 409491294 409491582 5.220000e-73 285
15 TraesCS3D01G450500 chr5D 83.959 293 31 12 2888 3172 478597224 478597508 1.890000e-67 267
16 TraesCS3D01G450500 chr5D 94.318 88 5 0 1 88 42137965 42137878 5.560000e-28 135
17 TraesCS3D01G450500 chr5D 93.407 91 6 0 1 91 42164082 42163992 5.560000e-28 135
18 TraesCS3D01G450500 chr5B 86.347 271 26 7 2877 3143 13848551 13848814 5.220000e-73 285
19 TraesCS3D01G450500 chr5A 83.849 291 40 6 2888 3175 205013092 205012806 1.460000e-68 270
20 TraesCS3D01G450500 chr1D 94.444 90 5 0 1 90 394838732 394838643 4.300000e-29 139
21 TraesCS3D01G450500 chr1D 97.500 80 2 0 1 80 394843316 394843237 1.550000e-28 137
22 TraesCS3D01G450500 chr7B 94.318 88 5 0 1 88 530677342 530677255 5.560000e-28 135
23 TraesCS3D01G450500 chr2B 94.318 88 5 0 1 88 68378321 68378408 5.560000e-28 135
24 TraesCS3D01G450500 chr2B 93.023 86 6 0 1 86 68371895 68371980 3.350000e-25 126
25 TraesCS3D01G450500 chr1B 91.304 92 8 0 1 92 564117977 564117886 3.350000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G450500 chr3D 558723179 558726374 3195 True 5903 5903 100.000 1 3196 1 chr3D.!!$R2 3195
1 TraesCS3D01G450500 chr3B 741502268 741504713 2445 True 3930 3930 95.684 423 2869 1 chr3B.!!$R1 2446
2 TraesCS3D01G450500 chr3A 695041813 695044372 2559 True 3773 3773 93.254 167 2743 1 chr3A.!!$R3 2576
3 TraesCS3D01G450500 chr3A 694969174 694970420 1246 True 274 372 79.374 1204 2062 2 chr3A.!!$R4 858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 297 0.320073 CCCGCAAGTTACAGGACGAA 60.320 55.0 0.0 0.0 0.00 3.85 F
926 935 0.747255 CGAATCCCGGTGATGTCTCT 59.253 55.0 0.0 0.0 32.68 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2417 1.626654 CGCTCTTGTACCTGCCGTTG 61.627 60.000 0.0 0.0 0.0 4.10 R
2635 3095 1.274728 GTGATCCTCGCAGCATATCCT 59.725 52.381 0.0 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.911918 TTGTAACATAACTCTGTATTGTTGGT 57.088 30.769 0.00 0.00 0.00 3.67
32 33 8.542497 TGTAACATAACTCTGTATTGTTGGTC 57.458 34.615 0.00 0.00 0.00 4.02
33 34 7.604927 TGTAACATAACTCTGTATTGTTGGTCC 59.395 37.037 0.00 0.00 0.00 4.46
34 35 6.374417 ACATAACTCTGTATTGTTGGTCCT 57.626 37.500 0.00 0.00 0.00 3.85
35 36 7.490657 ACATAACTCTGTATTGTTGGTCCTA 57.509 36.000 0.00 0.00 0.00 2.94
36 37 8.090788 ACATAACTCTGTATTGTTGGTCCTAT 57.909 34.615 0.00 0.00 0.00 2.57
37 38 9.209048 ACATAACTCTGTATTGTTGGTCCTATA 57.791 33.333 0.00 0.00 0.00 1.31
61 62 5.843673 ATATACGAGATATGTGGAGGCTG 57.156 43.478 0.00 0.00 0.00 4.85
62 63 1.781786 ACGAGATATGTGGAGGCTGT 58.218 50.000 0.00 0.00 0.00 4.40
63 64 1.410517 ACGAGATATGTGGAGGCTGTG 59.589 52.381 0.00 0.00 0.00 3.66
64 65 1.871408 CGAGATATGTGGAGGCTGTGC 60.871 57.143 0.00 0.00 0.00 4.57
80 81 3.717842 TGCCTCACACAACCCTAAC 57.282 52.632 0.00 0.00 0.00 2.34
81 82 1.136828 TGCCTCACACAACCCTAACT 58.863 50.000 0.00 0.00 0.00 2.24
82 83 1.493022 TGCCTCACACAACCCTAACTT 59.507 47.619 0.00 0.00 0.00 2.66
83 84 2.706723 TGCCTCACACAACCCTAACTTA 59.293 45.455 0.00 0.00 0.00 2.24
84 85 3.136809 TGCCTCACACAACCCTAACTTAA 59.863 43.478 0.00 0.00 0.00 1.85
85 86 4.139038 GCCTCACACAACCCTAACTTAAA 58.861 43.478 0.00 0.00 0.00 1.52
86 87 4.023450 GCCTCACACAACCCTAACTTAAAC 60.023 45.833 0.00 0.00 0.00 2.01
87 88 5.374071 CCTCACACAACCCTAACTTAAACT 58.626 41.667 0.00 0.00 0.00 2.66
88 89 5.238650 CCTCACACAACCCTAACTTAAACTG 59.761 44.000 0.00 0.00 0.00 3.16
89 90 5.127491 TCACACAACCCTAACTTAAACTGG 58.873 41.667 0.00 0.00 0.00 4.00
90 91 4.277423 CACACAACCCTAACTTAAACTGGG 59.723 45.833 0.00 0.00 43.26 4.45
91 92 3.824443 CACAACCCTAACTTAAACTGGGG 59.176 47.826 0.00 3.93 42.00 4.96
92 93 3.181426 ACAACCCTAACTTAAACTGGGGG 60.181 47.826 9.07 0.00 42.00 5.40
93 94 3.008340 ACCCTAACTTAAACTGGGGGA 57.992 47.619 9.07 0.00 42.00 4.81
94 95 2.917600 ACCCTAACTTAAACTGGGGGAG 59.082 50.000 9.07 0.00 42.00 4.30
95 96 2.241430 CCCTAACTTAAACTGGGGGAGG 59.759 54.545 0.00 0.00 34.71 4.30
96 97 2.241430 CCTAACTTAAACTGGGGGAGGG 59.759 54.545 0.00 0.00 0.00 4.30
97 98 1.081481 AACTTAAACTGGGGGAGGGG 58.919 55.000 0.00 0.00 0.00 4.79
98 99 1.306633 CTTAAACTGGGGGAGGGGC 59.693 63.158 0.00 0.00 0.00 5.80
99 100 2.552231 CTTAAACTGGGGGAGGGGCG 62.552 65.000 0.00 0.00 0.00 6.13
105 106 3.751018 GGGGGAGGGGCGGATTTT 61.751 66.667 0.00 0.00 0.00 1.82
106 107 2.388610 GGGGGAGGGGCGGATTTTA 61.389 63.158 0.00 0.00 0.00 1.52
107 108 1.152819 GGGGAGGGGCGGATTTTAC 60.153 63.158 0.00 0.00 0.00 2.01
108 109 1.642513 GGGGAGGGGCGGATTTTACT 61.643 60.000 0.00 0.00 0.00 2.24
109 110 1.134228 GGGAGGGGCGGATTTTACTA 58.866 55.000 0.00 0.00 0.00 1.82
110 111 1.071857 GGGAGGGGCGGATTTTACTAG 59.928 57.143 0.00 0.00 0.00 2.57
111 112 1.071857 GGAGGGGCGGATTTTACTAGG 59.928 57.143 0.00 0.00 0.00 3.02
112 113 1.767088 GAGGGGCGGATTTTACTAGGT 59.233 52.381 0.00 0.00 0.00 3.08
113 114 1.767088 AGGGGCGGATTTTACTAGGTC 59.233 52.381 0.00 0.00 0.00 3.85
114 115 1.202734 GGGGCGGATTTTACTAGGTCC 60.203 57.143 0.00 0.00 0.00 4.46
115 116 1.487558 GGGCGGATTTTACTAGGTCCA 59.512 52.381 0.00 0.00 0.00 4.02
116 117 2.484947 GGGCGGATTTTACTAGGTCCAG 60.485 54.545 0.00 0.00 0.00 3.86
117 118 2.169978 GGCGGATTTTACTAGGTCCAGT 59.830 50.000 0.00 0.00 0.00 4.00
118 119 3.370209 GGCGGATTTTACTAGGTCCAGTT 60.370 47.826 0.00 0.00 0.00 3.16
119 120 4.141869 GGCGGATTTTACTAGGTCCAGTTA 60.142 45.833 0.00 0.00 0.00 2.24
120 121 5.454329 GGCGGATTTTACTAGGTCCAGTTAT 60.454 44.000 0.00 0.00 0.00 1.89
121 122 6.239402 GGCGGATTTTACTAGGTCCAGTTATA 60.239 42.308 0.00 0.00 0.00 0.98
122 123 6.867293 GCGGATTTTACTAGGTCCAGTTATAG 59.133 42.308 0.00 0.00 0.00 1.31
123 124 7.255730 GCGGATTTTACTAGGTCCAGTTATAGA 60.256 40.741 0.00 0.00 0.00 1.98
124 125 8.804204 CGGATTTTACTAGGTCCAGTTATAGAT 58.196 37.037 0.00 0.00 0.00 1.98
125 126 9.930693 GGATTTTACTAGGTCCAGTTATAGATG 57.069 37.037 0.00 0.00 0.00 2.90
126 127 9.425577 GATTTTACTAGGTCCAGTTATAGATGC 57.574 37.037 0.00 0.00 0.00 3.91
127 128 8.548880 TTTTACTAGGTCCAGTTATAGATGCT 57.451 34.615 0.00 0.00 0.00 3.79
128 129 7.762588 TTACTAGGTCCAGTTATAGATGCTC 57.237 40.000 0.00 0.00 0.00 4.26
129 130 5.959512 ACTAGGTCCAGTTATAGATGCTCT 58.040 41.667 0.00 0.00 0.00 4.09
130 131 7.092748 ACTAGGTCCAGTTATAGATGCTCTA 57.907 40.000 0.00 0.00 32.87 2.43
131 132 7.527796 ACTAGGTCCAGTTATAGATGCTCTAA 58.472 38.462 0.00 0.00 31.96 2.10
132 133 8.005388 ACTAGGTCCAGTTATAGATGCTCTAAA 58.995 37.037 0.00 0.00 31.96 1.85
133 134 7.863901 AGGTCCAGTTATAGATGCTCTAAAT 57.136 36.000 0.00 0.00 31.96 1.40
134 135 8.268878 AGGTCCAGTTATAGATGCTCTAAATT 57.731 34.615 0.00 0.00 31.96 1.82
135 136 9.381038 AGGTCCAGTTATAGATGCTCTAAATTA 57.619 33.333 0.00 0.00 31.96 1.40
148 149 9.688592 GATGCTCTAAATTATCCTTTTGAATGG 57.311 33.333 0.00 0.00 0.00 3.16
149 150 8.593945 TGCTCTAAATTATCCTTTTGAATGGT 57.406 30.769 0.00 0.00 0.00 3.55
150 151 9.034800 TGCTCTAAATTATCCTTTTGAATGGTT 57.965 29.630 0.00 0.00 0.00 3.67
151 152 9.875691 GCTCTAAATTATCCTTTTGAATGGTTT 57.124 29.630 0.00 0.00 0.00 3.27
157 158 9.506018 AATTATCCTTTTGAATGGTTTTGAAGG 57.494 29.630 0.00 0.00 34.83 3.46
158 159 5.948742 TCCTTTTGAATGGTTTTGAAGGT 57.051 34.783 0.00 0.00 35.03 3.50
159 160 6.306643 TCCTTTTGAATGGTTTTGAAGGTT 57.693 33.333 0.00 0.00 35.03 3.50
160 161 6.716284 TCCTTTTGAATGGTTTTGAAGGTTT 58.284 32.000 0.00 0.00 35.03 3.27
161 162 7.171653 TCCTTTTGAATGGTTTTGAAGGTTTT 58.828 30.769 0.00 0.00 35.03 2.43
162 163 7.120432 TCCTTTTGAATGGTTTTGAAGGTTTTG 59.880 33.333 0.00 0.00 35.03 2.44
163 164 5.809719 TTGAATGGTTTTGAAGGTTTTGC 57.190 34.783 0.00 0.00 0.00 3.68
164 165 5.096443 TGAATGGTTTTGAAGGTTTTGCT 57.904 34.783 0.00 0.00 0.00 3.91
165 166 5.495640 TGAATGGTTTTGAAGGTTTTGCTT 58.504 33.333 0.00 0.00 0.00 3.91
170 171 9.620259 AATGGTTTTGAAGGTTTTGCTTAAATA 57.380 25.926 0.00 0.00 0.00 1.40
201 202 7.770801 AAAAGTGGTTTTGAAGCTAAATGTC 57.229 32.000 0.00 0.00 34.44 3.06
208 211 8.149647 TGGTTTTGAAGCTAAATGTCAAATCAT 58.850 29.630 10.49 0.00 40.08 2.45
212 215 5.951148 TGAAGCTAAATGTCAAATCATGGGA 59.049 36.000 0.00 0.00 0.00 4.37
213 216 6.436847 TGAAGCTAAATGTCAAATCATGGGAA 59.563 34.615 0.00 0.00 0.00 3.97
221 224 5.573219 TGTCAAATCATGGGAAGTCTTGAT 58.427 37.500 0.00 0.00 34.37 2.57
225 228 8.348507 GTCAAATCATGGGAAGTCTTGATATTC 58.651 37.037 0.00 0.00 33.16 1.75
251 254 2.275380 CCCCCAAAAAGGCGGTCTG 61.275 63.158 0.00 0.00 35.39 3.51
262 265 0.320697 GGCGGTCTGGACAACTTACT 59.679 55.000 3.10 0.00 0.00 2.24
265 268 2.416972 GCGGTCTGGACAACTTACTAGG 60.417 54.545 3.10 0.00 0.00 3.02
290 294 0.672711 GACCCCGCAAGTTACAGGAC 60.673 60.000 0.00 0.00 0.00 3.85
293 297 0.320073 CCCGCAAGTTACAGGACGAA 60.320 55.000 0.00 0.00 0.00 3.85
344 348 2.037772 CCGAGCTAGGCCATATCAAACT 59.962 50.000 5.01 0.00 0.00 2.66
375 379 9.086336 GACTTCAGAAACAAAATGACATTTCAA 57.914 29.630 13.68 0.00 34.61 2.69
376 380 9.603921 ACTTCAGAAACAAAATGACATTTCAAT 57.396 25.926 13.68 1.69 34.61 2.57
398 402 9.480053 TCAATTTTCATCTAGGCAAAAGAAAAG 57.520 29.630 0.00 0.00 38.06 2.27
409 415 7.977789 AGGCAAAAGAAAAGAAAGTTCAAAA 57.022 28.000 0.00 0.00 0.00 2.44
420 426 9.762933 AAAAGAAAGTTCAAAATAATGCTGCTA 57.237 25.926 0.00 0.00 0.00 3.49
568 574 2.559998 AACTGGCAAACAAACGTCTG 57.440 45.000 0.00 0.00 0.00 3.51
765 774 1.047002 CGGCTTGATCCTCATCCTCT 58.953 55.000 0.00 0.00 0.00 3.69
926 935 0.747255 CGAATCCCGGTGATGTCTCT 59.253 55.000 0.00 0.00 32.68 3.10
980 989 2.877691 GGCACCAAGATTCGGCAC 59.122 61.111 0.00 0.00 0.00 5.01
981 990 2.700773 GGCACCAAGATTCGGCACC 61.701 63.158 0.00 0.00 0.00 5.01
1040 1049 2.045634 CCCTAAGCAGCAGCAGCA 60.046 61.111 12.92 0.00 45.49 4.41
1068 1083 1.208165 AGGAGGATGGTGGGGTTGTC 61.208 60.000 0.00 0.00 0.00 3.18
1083 1098 2.511600 GTCAAGATCGGGCGGGTG 60.512 66.667 0.00 0.00 0.00 4.61
1263 1278 4.937193 CTGGAGAAGCTCAGGCAG 57.063 61.111 0.00 0.00 41.70 4.85
1334 1349 1.645034 CATCGCTGGATCACTTCGTT 58.355 50.000 0.00 0.00 0.00 3.85
1342 1357 4.212214 GCTGGATCACTTCGTTAATCATCC 59.788 45.833 0.00 0.00 0.00 3.51
1594 1619 2.124151 GTTCATCCGGCAGCCCAT 60.124 61.111 5.63 0.00 0.00 4.00
2216 2675 3.071167 AGACCGCCAAGAACTATAATCCC 59.929 47.826 0.00 0.00 0.00 3.85
2223 2682 7.993183 CCGCCAAGAACTATAATCCCATATTAT 59.007 37.037 0.00 0.00 0.00 1.28
2270 2729 3.424433 GCGTTTGTGTACAGGATTGCTAC 60.424 47.826 0.00 0.00 0.00 3.58
2399 2859 8.782533 AAATACTTTTTCTTGTCTTTGTAGCG 57.217 30.769 0.00 0.00 0.00 4.26
2489 2949 7.645058 AACCATGATCATTCTTTTAATCCGT 57.355 32.000 5.16 0.00 0.00 4.69
2516 2976 8.715191 TGACAATTGAAAAGCAAACACTTTAT 57.285 26.923 13.59 0.00 38.92 1.40
2560 3020 2.328099 GCGGTGAGAACCAAGGCAG 61.328 63.158 0.00 0.00 0.00 4.85
2588 3048 3.181451 CCATGGGCTAAGCATCACTCTTA 60.181 47.826 2.85 0.00 0.00 2.10
2740 3201 5.803967 GCTTGGAATCTAGAAATGCAAACAG 59.196 40.000 14.02 6.71 0.00 3.16
2803 3264 6.783708 AACAACAAACTTGACCTGGAATAA 57.216 33.333 0.00 0.00 0.00 1.40
2863 3325 7.020914 AGCTATACATAAGCAAAGCTTCAAC 57.979 36.000 7.62 0.00 46.77 3.18
2869 3331 5.711976 ACATAAGCAAAGCTTCAACCATACT 59.288 36.000 7.62 0.00 46.77 2.12
2870 3332 4.773323 AAGCAAAGCTTCAACCATACTC 57.227 40.909 0.00 0.00 46.77 2.59
2871 3333 4.026356 AGCAAAGCTTCAACCATACTCT 57.974 40.909 0.00 0.00 33.89 3.24
2872 3334 3.755378 AGCAAAGCTTCAACCATACTCTG 59.245 43.478 0.00 0.00 33.89 3.35
2873 3335 3.503748 GCAAAGCTTCAACCATACTCTGT 59.496 43.478 0.00 0.00 0.00 3.41
2874 3336 4.378874 GCAAAGCTTCAACCATACTCTGTC 60.379 45.833 0.00 0.00 0.00 3.51
2875 3337 4.623932 AAGCTTCAACCATACTCTGTCA 57.376 40.909 0.00 0.00 0.00 3.58
2876 3338 4.199432 AGCTTCAACCATACTCTGTCAG 57.801 45.455 0.00 0.00 0.00 3.51
2877 3339 3.580458 AGCTTCAACCATACTCTGTCAGT 59.420 43.478 0.00 0.00 39.41 3.41
2878 3340 3.929610 GCTTCAACCATACTCTGTCAGTC 59.070 47.826 0.00 0.00 36.43 3.51
2879 3341 4.499183 CTTCAACCATACTCTGTCAGTCC 58.501 47.826 0.00 0.00 36.43 3.85
2880 3342 3.506398 TCAACCATACTCTGTCAGTCCA 58.494 45.455 0.00 0.00 36.43 4.02
2881 3343 3.258372 TCAACCATACTCTGTCAGTCCAC 59.742 47.826 0.00 0.00 36.43 4.02
2882 3344 2.889512 ACCATACTCTGTCAGTCCACA 58.110 47.619 0.00 0.00 36.43 4.17
2883 3345 3.239449 ACCATACTCTGTCAGTCCACAA 58.761 45.455 0.00 0.00 36.43 3.33
2884 3346 3.646162 ACCATACTCTGTCAGTCCACAAA 59.354 43.478 0.00 0.00 36.43 2.83
2885 3347 4.287067 ACCATACTCTGTCAGTCCACAAAT 59.713 41.667 0.00 0.00 36.43 2.32
2886 3348 5.483937 ACCATACTCTGTCAGTCCACAAATA 59.516 40.000 0.00 0.00 36.43 1.40
2887 3349 6.013725 ACCATACTCTGTCAGTCCACAAATAA 60.014 38.462 0.00 0.00 36.43 1.40
2888 3350 6.536582 CCATACTCTGTCAGTCCACAAATAAG 59.463 42.308 0.00 0.00 36.43 1.73
2889 3351 5.552870 ACTCTGTCAGTCCACAAATAAGT 57.447 39.130 0.00 0.00 0.00 2.24
2890 3352 5.300752 ACTCTGTCAGTCCACAAATAAGTG 58.699 41.667 0.00 0.00 39.21 3.16
2891 3353 5.163301 ACTCTGTCAGTCCACAAATAAGTGT 60.163 40.000 0.00 0.00 37.82 3.55
2892 3354 6.041637 ACTCTGTCAGTCCACAAATAAGTGTA 59.958 38.462 0.00 0.00 37.82 2.90
2893 3355 6.822442 TCTGTCAGTCCACAAATAAGTGTAA 58.178 36.000 0.00 0.00 37.82 2.41
2894 3356 7.276658 TCTGTCAGTCCACAAATAAGTGTAAA 58.723 34.615 0.00 0.00 37.82 2.01
2895 3357 7.225931 TCTGTCAGTCCACAAATAAGTGTAAAC 59.774 37.037 0.00 0.00 37.82 2.01
2896 3358 6.824196 TGTCAGTCCACAAATAAGTGTAAACA 59.176 34.615 0.00 0.00 37.82 2.83
2897 3359 7.500892 TGTCAGTCCACAAATAAGTGTAAACAT 59.499 33.333 0.00 0.00 37.82 2.71
2898 3360 8.995220 GTCAGTCCACAAATAAGTGTAAACATA 58.005 33.333 0.00 0.00 37.82 2.29
2899 3361 9.562408 TCAGTCCACAAATAAGTGTAAACATAA 57.438 29.630 0.00 0.00 37.82 1.90
2952 3414 7.656707 AAAAATGTATTGTGAAGGTGCAATC 57.343 32.000 0.00 0.00 36.75 2.67
2953 3415 4.989279 ATGTATTGTGAAGGTGCAATCC 57.011 40.909 0.00 0.00 36.75 3.01
2954 3416 3.760738 TGTATTGTGAAGGTGCAATCCA 58.239 40.909 0.00 0.00 36.75 3.41
2955 3417 3.505680 TGTATTGTGAAGGTGCAATCCAC 59.494 43.478 0.00 0.00 43.90 4.02
2964 3426 2.706339 GTGCAATCCACCATCTCTCT 57.294 50.000 0.00 0.00 38.55 3.10
2965 3427 2.559440 GTGCAATCCACCATCTCTCTC 58.441 52.381 0.00 0.00 38.55 3.20
2966 3428 1.487976 TGCAATCCACCATCTCTCTCC 59.512 52.381 0.00 0.00 0.00 3.71
2967 3429 1.767681 GCAATCCACCATCTCTCTCCT 59.232 52.381 0.00 0.00 0.00 3.69
2968 3430 2.224257 GCAATCCACCATCTCTCTCCTC 60.224 54.545 0.00 0.00 0.00 3.71
2969 3431 3.307506 CAATCCACCATCTCTCTCCTCT 58.692 50.000 0.00 0.00 0.00 3.69
2970 3432 3.704545 ATCCACCATCTCTCTCCTCTT 57.295 47.619 0.00 0.00 0.00 2.85
2971 3433 3.481559 TCCACCATCTCTCTCCTCTTT 57.518 47.619 0.00 0.00 0.00 2.52
2972 3434 4.609866 TCCACCATCTCTCTCCTCTTTA 57.390 45.455 0.00 0.00 0.00 1.85
2973 3435 4.947883 TCCACCATCTCTCTCCTCTTTAA 58.052 43.478 0.00 0.00 0.00 1.52
2974 3436 5.533112 TCCACCATCTCTCTCCTCTTTAAT 58.467 41.667 0.00 0.00 0.00 1.40
2975 3437 5.966935 TCCACCATCTCTCTCCTCTTTAATT 59.033 40.000 0.00 0.00 0.00 1.40
2976 3438 7.132805 TCCACCATCTCTCTCCTCTTTAATTA 58.867 38.462 0.00 0.00 0.00 1.40
2977 3439 7.070074 TCCACCATCTCTCTCCTCTTTAATTAC 59.930 40.741 0.00 0.00 0.00 1.89
2978 3440 7.213678 CACCATCTCTCTCCTCTTTAATTACC 58.786 42.308 0.00 0.00 0.00 2.85
2979 3441 6.041069 ACCATCTCTCTCCTCTTTAATTACCG 59.959 42.308 0.00 0.00 0.00 4.02
2980 3442 5.517322 TCTCTCTCCTCTTTAATTACCGC 57.483 43.478 0.00 0.00 0.00 5.68
2981 3443 4.954202 TCTCTCTCCTCTTTAATTACCGCA 59.046 41.667 0.00 0.00 0.00 5.69
2982 3444 5.007385 TCTCTCCTCTTTAATTACCGCAC 57.993 43.478 0.00 0.00 0.00 5.34
2983 3445 4.710375 TCTCTCCTCTTTAATTACCGCACT 59.290 41.667 0.00 0.00 0.00 4.40
2984 3446 5.007385 TCTCCTCTTTAATTACCGCACTC 57.993 43.478 0.00 0.00 0.00 3.51
2985 3447 4.120589 CTCCTCTTTAATTACCGCACTCC 58.879 47.826 0.00 0.00 0.00 3.85
2986 3448 3.118519 TCCTCTTTAATTACCGCACTCCC 60.119 47.826 0.00 0.00 0.00 4.30
2987 3449 3.370103 CCTCTTTAATTACCGCACTCCCA 60.370 47.826 0.00 0.00 0.00 4.37
2988 3450 4.258543 CTCTTTAATTACCGCACTCCCAA 58.741 43.478 0.00 0.00 0.00 4.12
2989 3451 4.850680 TCTTTAATTACCGCACTCCCAAT 58.149 39.130 0.00 0.00 0.00 3.16
2990 3452 4.638421 TCTTTAATTACCGCACTCCCAATG 59.362 41.667 0.00 0.00 0.00 2.82
2991 3453 1.102978 AATTACCGCACTCCCAATGC 58.897 50.000 0.00 0.00 39.81 3.56
2996 3458 3.903783 GCACTCCCAATGCGCTAA 58.096 55.556 9.73 0.00 32.45 3.09
2997 3459 1.723870 GCACTCCCAATGCGCTAAG 59.276 57.895 9.73 0.00 32.45 2.18
2998 3460 1.026718 GCACTCCCAATGCGCTAAGT 61.027 55.000 9.73 0.00 32.45 2.24
2999 3461 0.729116 CACTCCCAATGCGCTAAGTG 59.271 55.000 9.73 9.21 0.00 3.16
3000 3462 1.026718 ACTCCCAATGCGCTAAGTGC 61.027 55.000 9.73 0.00 39.75 4.40
3008 3470 2.378445 TGCGCTAAGTGCATGTAGAA 57.622 45.000 9.73 0.00 44.36 2.10
3009 3471 2.694213 TGCGCTAAGTGCATGTAGAAA 58.306 42.857 9.73 0.00 44.36 2.52
3010 3472 2.672874 TGCGCTAAGTGCATGTAGAAAG 59.327 45.455 9.73 3.13 44.36 2.62
3011 3473 2.673368 GCGCTAAGTGCATGTAGAAAGT 59.327 45.455 0.00 0.00 43.06 2.66
3012 3474 3.484229 GCGCTAAGTGCATGTAGAAAGTG 60.484 47.826 0.00 0.00 43.06 3.16
3013 3475 3.926527 CGCTAAGTGCATGTAGAAAGTGA 59.073 43.478 10.04 0.00 43.06 3.41
3014 3476 4.032217 CGCTAAGTGCATGTAGAAAGTGAG 59.968 45.833 10.04 0.00 43.06 3.51
3015 3477 5.171476 GCTAAGTGCATGTAGAAAGTGAGA 58.829 41.667 10.04 0.00 42.31 3.27
3016 3478 5.639506 GCTAAGTGCATGTAGAAAGTGAGAA 59.360 40.000 10.04 0.00 42.31 2.87
3017 3479 6.183360 GCTAAGTGCATGTAGAAAGTGAGAAG 60.183 42.308 10.04 0.00 42.31 2.85
3018 3480 5.474578 AGTGCATGTAGAAAGTGAGAAGA 57.525 39.130 0.00 0.00 0.00 2.87
3019 3481 5.233988 AGTGCATGTAGAAAGTGAGAAGAC 58.766 41.667 0.00 0.00 0.00 3.01
3020 3482 4.390297 GTGCATGTAGAAAGTGAGAAGACC 59.610 45.833 0.00 0.00 0.00 3.85
3021 3483 4.040339 TGCATGTAGAAAGTGAGAAGACCA 59.960 41.667 0.00 0.00 0.00 4.02
3022 3484 5.181748 GCATGTAGAAAGTGAGAAGACCAT 58.818 41.667 0.00 0.00 0.00 3.55
3023 3485 5.064452 GCATGTAGAAAGTGAGAAGACCATG 59.936 44.000 0.00 0.00 0.00 3.66
3024 3486 5.808366 TGTAGAAAGTGAGAAGACCATGT 57.192 39.130 0.00 0.00 0.00 3.21
3025 3487 5.541845 TGTAGAAAGTGAGAAGACCATGTG 58.458 41.667 0.00 0.00 0.00 3.21
3026 3488 4.696479 AGAAAGTGAGAAGACCATGTGT 57.304 40.909 0.00 0.00 0.00 3.72
3027 3489 5.041191 AGAAAGTGAGAAGACCATGTGTT 57.959 39.130 0.00 0.00 0.00 3.32
3028 3490 4.818546 AGAAAGTGAGAAGACCATGTGTTG 59.181 41.667 0.00 0.00 0.00 3.33
3029 3491 4.422073 AAGTGAGAAGACCATGTGTTGA 57.578 40.909 0.00 0.00 0.00 3.18
3030 3492 4.422073 AGTGAGAAGACCATGTGTTGAA 57.578 40.909 0.00 0.00 0.00 2.69
3031 3493 4.978099 AGTGAGAAGACCATGTGTTGAAT 58.022 39.130 0.00 0.00 0.00 2.57
3032 3494 4.758674 AGTGAGAAGACCATGTGTTGAATG 59.241 41.667 0.00 0.00 0.00 2.67
3033 3495 4.516698 GTGAGAAGACCATGTGTTGAATGT 59.483 41.667 0.00 0.00 0.00 2.71
3034 3496 5.700832 GTGAGAAGACCATGTGTTGAATGTA 59.299 40.000 0.00 0.00 0.00 2.29
3035 3497 6.204688 GTGAGAAGACCATGTGTTGAATGTAA 59.795 38.462 0.00 0.00 0.00 2.41
3036 3498 6.942005 TGAGAAGACCATGTGTTGAATGTAAT 59.058 34.615 0.00 0.00 0.00 1.89
3037 3499 7.448161 TGAGAAGACCATGTGTTGAATGTAATT 59.552 33.333 0.00 0.00 40.93 1.40
3038 3500 7.596494 AGAAGACCATGTGTTGAATGTAATTG 58.404 34.615 0.00 0.00 36.07 2.32
3039 3501 6.271488 AGACCATGTGTTGAATGTAATTGG 57.729 37.500 0.00 0.00 36.07 3.16
3040 3502 5.774690 AGACCATGTGTTGAATGTAATTGGT 59.225 36.000 0.00 0.00 36.07 3.67
3041 3503 6.024552 ACCATGTGTTGAATGTAATTGGTC 57.975 37.500 0.00 0.00 36.07 4.02
3042 3504 5.774690 ACCATGTGTTGAATGTAATTGGTCT 59.225 36.000 0.00 0.00 36.07 3.85
3043 3505 6.267471 ACCATGTGTTGAATGTAATTGGTCTT 59.733 34.615 0.00 0.00 36.07 3.01
3044 3506 6.587226 CCATGTGTTGAATGTAATTGGTCTTG 59.413 38.462 0.00 0.00 36.07 3.02
3045 3507 6.951062 TGTGTTGAATGTAATTGGTCTTGA 57.049 33.333 0.00 0.00 36.07 3.02
3046 3508 7.523293 TGTGTTGAATGTAATTGGTCTTGAT 57.477 32.000 0.00 0.00 36.07 2.57
3047 3509 7.950512 TGTGTTGAATGTAATTGGTCTTGATT 58.049 30.769 0.00 0.00 36.07 2.57
3048 3510 9.072375 TGTGTTGAATGTAATTGGTCTTGATTA 57.928 29.630 0.00 0.00 36.07 1.75
3049 3511 9.341899 GTGTTGAATGTAATTGGTCTTGATTAC 57.658 33.333 0.00 0.00 36.07 1.89
3050 3512 9.295825 TGTTGAATGTAATTGGTCTTGATTACT 57.704 29.630 7.49 0.00 36.07 2.24
3051 3513 9.559958 GTTGAATGTAATTGGTCTTGATTACTG 57.440 33.333 7.49 0.00 36.07 2.74
3052 3514 8.862325 TGAATGTAATTGGTCTTGATTACTGT 57.138 30.769 7.49 0.00 36.07 3.55
3053 3515 8.729756 TGAATGTAATTGGTCTTGATTACTGTG 58.270 33.333 7.49 0.00 36.07 3.66
3054 3516 6.494893 TGTAATTGGTCTTGATTACTGTGC 57.505 37.500 7.49 0.00 38.76 4.57
3055 3517 4.685169 AATTGGTCTTGATTACTGTGCG 57.315 40.909 0.00 0.00 0.00 5.34
3056 3518 3.394674 TTGGTCTTGATTACTGTGCGA 57.605 42.857 0.00 0.00 0.00 5.10
3057 3519 2.959516 TGGTCTTGATTACTGTGCGAG 58.040 47.619 0.00 0.00 0.00 5.03
3058 3520 2.560981 TGGTCTTGATTACTGTGCGAGA 59.439 45.455 0.00 0.00 0.00 4.04
3059 3521 3.006430 TGGTCTTGATTACTGTGCGAGAA 59.994 43.478 0.00 0.00 0.00 2.87
3060 3522 3.614616 GGTCTTGATTACTGTGCGAGAAG 59.385 47.826 0.00 0.00 0.00 2.85
3061 3523 4.486090 GTCTTGATTACTGTGCGAGAAGA 58.514 43.478 0.00 0.00 0.00 2.87
3062 3524 4.560819 GTCTTGATTACTGTGCGAGAAGAG 59.439 45.833 0.00 0.00 0.00 2.85
3063 3525 4.459337 TCTTGATTACTGTGCGAGAAGAGA 59.541 41.667 0.00 0.00 0.00 3.10
3064 3526 4.362932 TGATTACTGTGCGAGAAGAGAG 57.637 45.455 0.00 0.00 0.00 3.20
3065 3527 4.010349 TGATTACTGTGCGAGAAGAGAGA 58.990 43.478 0.00 0.00 0.00 3.10
3066 3528 4.459337 TGATTACTGTGCGAGAAGAGAGAA 59.541 41.667 0.00 0.00 0.00 2.87
3067 3529 4.848562 TTACTGTGCGAGAAGAGAGAAA 57.151 40.909 0.00 0.00 0.00 2.52
3068 3530 3.019933 ACTGTGCGAGAAGAGAGAAAC 57.980 47.619 0.00 0.00 0.00 2.78
3069 3531 2.362397 ACTGTGCGAGAAGAGAGAAACA 59.638 45.455 0.00 0.00 0.00 2.83
3070 3532 3.006323 ACTGTGCGAGAAGAGAGAAACAT 59.994 43.478 0.00 0.00 0.00 2.71
3071 3533 3.993081 CTGTGCGAGAAGAGAGAAACATT 59.007 43.478 0.00 0.00 0.00 2.71
3072 3534 4.380531 TGTGCGAGAAGAGAGAAACATTT 58.619 39.130 0.00 0.00 0.00 2.32
3073 3535 4.816385 TGTGCGAGAAGAGAGAAACATTTT 59.184 37.500 0.00 0.00 0.00 1.82
3074 3536 5.296780 TGTGCGAGAAGAGAGAAACATTTTT 59.703 36.000 0.00 0.00 0.00 1.94
3096 3558 6.707440 TTTTCTACTTTGAAGTGCATTGGA 57.293 33.333 6.64 0.00 40.07 3.53
3097 3559 6.707440 TTTCTACTTTGAAGTGCATTGGAA 57.293 33.333 6.64 0.43 40.07 3.53
3098 3560 5.947228 TCTACTTTGAAGTGCATTGGAAG 57.053 39.130 6.64 0.00 40.07 3.46
3099 3561 5.620206 TCTACTTTGAAGTGCATTGGAAGA 58.380 37.500 6.64 0.00 40.07 2.87
3100 3562 6.240894 TCTACTTTGAAGTGCATTGGAAGAT 58.759 36.000 6.64 0.00 40.07 2.40
3101 3563 7.394016 TCTACTTTGAAGTGCATTGGAAGATA 58.606 34.615 6.64 0.00 40.07 1.98
3102 3564 6.506500 ACTTTGAAGTGCATTGGAAGATAG 57.493 37.500 0.00 0.00 37.98 2.08
3103 3565 6.240894 ACTTTGAAGTGCATTGGAAGATAGA 58.759 36.000 0.00 0.00 37.98 1.98
3104 3566 6.716628 ACTTTGAAGTGCATTGGAAGATAGAA 59.283 34.615 0.00 0.00 37.98 2.10
3105 3567 7.231317 ACTTTGAAGTGCATTGGAAGATAGAAA 59.769 33.333 0.00 0.00 37.98 2.52
3106 3568 7.707624 TTGAAGTGCATTGGAAGATAGAAAT 57.292 32.000 0.00 0.00 0.00 2.17
3107 3569 8.806429 TTGAAGTGCATTGGAAGATAGAAATA 57.194 30.769 0.00 0.00 0.00 1.40
3108 3570 8.442632 TGAAGTGCATTGGAAGATAGAAATAG 57.557 34.615 0.00 0.00 0.00 1.73
3109 3571 8.049117 TGAAGTGCATTGGAAGATAGAAATAGT 58.951 33.333 0.00 0.00 0.00 2.12
3110 3572 9.547753 GAAGTGCATTGGAAGATAGAAATAGTA 57.452 33.333 0.00 0.00 0.00 1.82
3111 3573 8.894768 AGTGCATTGGAAGATAGAAATAGTAC 57.105 34.615 0.00 0.00 0.00 2.73
3112 3574 8.486210 AGTGCATTGGAAGATAGAAATAGTACA 58.514 33.333 0.00 0.00 0.00 2.90
3113 3575 8.552034 GTGCATTGGAAGATAGAAATAGTACAC 58.448 37.037 0.00 0.00 0.00 2.90
3114 3576 8.486210 TGCATTGGAAGATAGAAATAGTACACT 58.514 33.333 0.00 0.00 0.00 3.55
3115 3577 8.983724 GCATTGGAAGATAGAAATAGTACACTC 58.016 37.037 0.00 0.00 0.00 3.51
3123 3585 9.877178 AGATAGAAATAGTACACTCTTTTGTGG 57.123 33.333 0.00 0.00 41.84 4.17
3124 3586 9.871238 GATAGAAATAGTACACTCTTTTGTGGA 57.129 33.333 0.00 0.00 41.84 4.02
3136 3598 9.665719 ACACTCTTTTGTGGACAAATTTTAAAT 57.334 25.926 5.80 0.00 44.30 1.40
3137 3599 9.919348 CACTCTTTTGTGGACAAATTTTAAATG 57.081 29.630 5.80 0.00 44.30 2.32
3138 3600 9.665719 ACTCTTTTGTGGACAAATTTTAAATGT 57.334 25.926 5.80 0.00 44.30 2.71
3140 3602 9.658799 TCTTTTGTGGACAAATTTTAAATGTCA 57.341 25.926 17.74 5.93 44.30 3.58
3145 3607 9.388506 TGTGGACAAATTTTAAATGTCAAATGT 57.611 25.926 17.74 5.35 44.05 2.71
3159 3621 9.859427 AAATGTCAAATGTACACTTATTCATGG 57.141 29.630 0.00 0.00 0.00 3.66
3160 3622 8.806429 ATGTCAAATGTACACTTATTCATGGA 57.194 30.769 0.00 0.00 0.00 3.41
3161 3623 8.039603 TGTCAAATGTACACTTATTCATGGAC 57.960 34.615 0.00 0.00 0.00 4.02
3162 3624 7.148490 TGTCAAATGTACACTTATTCATGGACG 60.148 37.037 0.00 0.00 31.76 4.79
3163 3625 6.315144 TCAAATGTACACTTATTCATGGACGG 59.685 38.462 0.00 0.00 31.76 4.79
3164 3626 5.607939 ATGTACACTTATTCATGGACGGA 57.392 39.130 0.00 0.00 31.76 4.69
3165 3627 5.006153 TGTACACTTATTCATGGACGGAG 57.994 43.478 0.00 0.00 31.76 4.63
3166 3628 4.707934 TGTACACTTATTCATGGACGGAGA 59.292 41.667 0.00 0.00 31.76 3.71
3167 3629 4.392921 ACACTTATTCATGGACGGAGAG 57.607 45.455 0.00 0.00 0.00 3.20
3168 3630 4.023980 ACACTTATTCATGGACGGAGAGA 58.976 43.478 0.00 0.00 0.00 3.10
3169 3631 4.098654 ACACTTATTCATGGACGGAGAGAG 59.901 45.833 0.00 0.00 0.00 3.20
3170 3632 4.098654 CACTTATTCATGGACGGAGAGAGT 59.901 45.833 0.00 0.00 0.00 3.24
3171 3633 5.299531 CACTTATTCATGGACGGAGAGAGTA 59.700 44.000 0.00 0.00 0.00 2.59
3172 3634 5.299782 ACTTATTCATGGACGGAGAGAGTAC 59.700 44.000 0.00 0.00 0.00 2.73
3173 3635 2.801077 TCATGGACGGAGAGAGTACA 57.199 50.000 0.00 0.00 36.79 2.90
3174 3636 2.366533 TCATGGACGGAGAGAGTACAC 58.633 52.381 0.00 0.00 34.93 2.90
3175 3637 2.092323 CATGGACGGAGAGAGTACACA 58.908 52.381 0.00 0.00 34.93 3.72
3176 3638 2.281539 TGGACGGAGAGAGTACACAA 57.718 50.000 0.00 0.00 0.00 3.33
3177 3639 1.884579 TGGACGGAGAGAGTACACAAC 59.115 52.381 0.00 0.00 0.00 3.32
3178 3640 1.884579 GGACGGAGAGAGTACACAACA 59.115 52.381 0.00 0.00 0.00 3.33
3179 3641 2.492484 GGACGGAGAGAGTACACAACAT 59.508 50.000 0.00 0.00 0.00 2.71
3180 3642 3.427773 GGACGGAGAGAGTACACAACATC 60.428 52.174 0.00 0.00 0.00 3.06
3181 3643 3.154710 ACGGAGAGAGTACACAACATCA 58.845 45.455 0.00 0.00 0.00 3.07
3182 3644 3.191581 ACGGAGAGAGTACACAACATCAG 59.808 47.826 0.00 0.00 0.00 2.90
3183 3645 3.440522 CGGAGAGAGTACACAACATCAGA 59.559 47.826 0.00 0.00 0.00 3.27
3184 3646 4.082733 CGGAGAGAGTACACAACATCAGAA 60.083 45.833 0.00 0.00 0.00 3.02
3185 3647 5.406649 GGAGAGAGTACACAACATCAGAAG 58.593 45.833 0.00 0.00 0.00 2.85
3186 3648 5.184096 GGAGAGAGTACACAACATCAGAAGA 59.816 44.000 0.00 0.00 0.00 2.87
3187 3649 6.266168 AGAGAGTACACAACATCAGAAGAG 57.734 41.667 0.00 0.00 0.00 2.85
3188 3650 4.815269 AGAGTACACAACATCAGAAGAGC 58.185 43.478 0.00 0.00 0.00 4.09
3189 3651 4.281941 AGAGTACACAACATCAGAAGAGCA 59.718 41.667 0.00 0.00 0.00 4.26
3190 3652 4.310769 AGTACACAACATCAGAAGAGCAC 58.689 43.478 0.00 0.00 0.00 4.40
3191 3653 3.198409 ACACAACATCAGAAGAGCACA 57.802 42.857 0.00 0.00 0.00 4.57
3192 3654 3.544684 ACACAACATCAGAAGAGCACAA 58.455 40.909 0.00 0.00 0.00 3.33
3193 3655 3.947196 ACACAACATCAGAAGAGCACAAA 59.053 39.130 0.00 0.00 0.00 2.83
3194 3656 4.581824 ACACAACATCAGAAGAGCACAAAT 59.418 37.500 0.00 0.00 0.00 2.32
3195 3657 4.915667 CACAACATCAGAAGAGCACAAATG 59.084 41.667 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.515226 ACCAACAATACAGAGTTATGTTACAAT 57.485 29.630 0.00 0.00 33.24 2.71
6 7 8.911918 ACCAACAATACAGAGTTATGTTACAA 57.088 30.769 0.00 0.00 33.24 2.41
7 8 7.604927 GGACCAACAATACAGAGTTATGTTACA 59.395 37.037 0.00 0.00 33.24 2.41
8 9 7.822822 AGGACCAACAATACAGAGTTATGTTAC 59.177 37.037 0.00 0.00 33.24 2.50
9 10 7.913789 AGGACCAACAATACAGAGTTATGTTA 58.086 34.615 0.00 0.00 33.24 2.41
10 11 6.779860 AGGACCAACAATACAGAGTTATGTT 58.220 36.000 0.00 0.00 34.56 2.71
11 12 6.374417 AGGACCAACAATACAGAGTTATGT 57.626 37.500 0.00 0.00 37.19 2.29
35 36 9.237187 CAGCCTCCACATATCTCGTATATATAT 57.763 37.037 0.00 0.00 0.00 0.86
36 37 8.218488 ACAGCCTCCACATATCTCGTATATATA 58.782 37.037 0.00 0.00 0.00 0.86
37 38 7.013750 CACAGCCTCCACATATCTCGTATATAT 59.986 40.741 0.00 0.00 0.00 0.86
38 39 6.318900 CACAGCCTCCACATATCTCGTATATA 59.681 42.308 0.00 0.00 0.00 0.86
39 40 5.126222 CACAGCCTCCACATATCTCGTATAT 59.874 44.000 0.00 0.00 0.00 0.86
40 41 4.459337 CACAGCCTCCACATATCTCGTATA 59.541 45.833 0.00 0.00 0.00 1.47
41 42 3.256879 CACAGCCTCCACATATCTCGTAT 59.743 47.826 0.00 0.00 0.00 3.06
42 43 2.623416 CACAGCCTCCACATATCTCGTA 59.377 50.000 0.00 0.00 0.00 3.43
43 44 1.410517 CACAGCCTCCACATATCTCGT 59.589 52.381 0.00 0.00 0.00 4.18
44 45 1.871408 GCACAGCCTCCACATATCTCG 60.871 57.143 0.00 0.00 0.00 4.04
45 46 1.542108 GGCACAGCCTCCACATATCTC 60.542 57.143 0.00 0.00 46.69 2.75
46 47 0.471617 GGCACAGCCTCCACATATCT 59.528 55.000 0.00 0.00 46.69 1.98
47 48 3.012560 GGCACAGCCTCCACATATC 57.987 57.895 0.00 0.00 46.69 1.63
62 63 1.136828 AGTTAGGGTTGTGTGAGGCA 58.863 50.000 0.00 0.00 0.00 4.75
63 64 2.271944 AAGTTAGGGTTGTGTGAGGC 57.728 50.000 0.00 0.00 0.00 4.70
64 65 5.238650 CAGTTTAAGTTAGGGTTGTGTGAGG 59.761 44.000 0.00 0.00 0.00 3.86
65 66 5.238650 CCAGTTTAAGTTAGGGTTGTGTGAG 59.761 44.000 0.00 0.00 0.00 3.51
66 67 5.127491 CCAGTTTAAGTTAGGGTTGTGTGA 58.873 41.667 0.00 0.00 0.00 3.58
67 68 4.277423 CCCAGTTTAAGTTAGGGTTGTGTG 59.723 45.833 0.00 0.00 34.75 3.82
68 69 4.466827 CCCAGTTTAAGTTAGGGTTGTGT 58.533 43.478 0.00 0.00 34.75 3.72
69 70 3.824443 CCCCAGTTTAAGTTAGGGTTGTG 59.176 47.826 4.66 0.00 37.84 3.33
70 71 3.181426 CCCCCAGTTTAAGTTAGGGTTGT 60.181 47.826 4.66 0.00 37.84 3.32
71 72 3.074836 TCCCCCAGTTTAAGTTAGGGTTG 59.925 47.826 4.66 0.00 37.84 3.77
72 73 3.332783 CTCCCCCAGTTTAAGTTAGGGTT 59.667 47.826 4.66 0.00 37.84 4.11
73 74 2.917600 CTCCCCCAGTTTAAGTTAGGGT 59.082 50.000 4.66 0.00 37.84 4.34
74 75 2.241430 CCTCCCCCAGTTTAAGTTAGGG 59.759 54.545 0.00 0.00 39.29 3.53
75 76 2.241430 CCCTCCCCCAGTTTAAGTTAGG 59.759 54.545 0.00 0.00 0.00 2.69
76 77 2.241430 CCCCTCCCCCAGTTTAAGTTAG 59.759 54.545 0.00 0.00 0.00 2.34
77 78 2.281034 CCCCTCCCCCAGTTTAAGTTA 58.719 52.381 0.00 0.00 0.00 2.24
78 79 1.081481 CCCCTCCCCCAGTTTAAGTT 58.919 55.000 0.00 0.00 0.00 2.66
79 80 1.506907 GCCCCTCCCCCAGTTTAAGT 61.507 60.000 0.00 0.00 0.00 2.24
80 81 1.306633 GCCCCTCCCCCAGTTTAAG 59.693 63.158 0.00 0.00 0.00 1.85
81 82 2.608550 CGCCCCTCCCCCAGTTTAA 61.609 63.158 0.00 0.00 0.00 1.52
82 83 3.012722 CGCCCCTCCCCCAGTTTA 61.013 66.667 0.00 0.00 0.00 2.01
88 89 2.388610 TAAAATCCGCCCCTCCCCC 61.389 63.158 0.00 0.00 0.00 5.40
89 90 1.152819 GTAAAATCCGCCCCTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
90 91 1.071857 CTAGTAAAATCCGCCCCTCCC 59.928 57.143 0.00 0.00 0.00 4.30
91 92 1.071857 CCTAGTAAAATCCGCCCCTCC 59.928 57.143 0.00 0.00 0.00 4.30
92 93 1.767088 ACCTAGTAAAATCCGCCCCTC 59.233 52.381 0.00 0.00 0.00 4.30
93 94 1.767088 GACCTAGTAAAATCCGCCCCT 59.233 52.381 0.00 0.00 0.00 4.79
94 95 1.202734 GGACCTAGTAAAATCCGCCCC 60.203 57.143 0.00 0.00 0.00 5.80
95 96 1.487558 TGGACCTAGTAAAATCCGCCC 59.512 52.381 0.00 0.00 33.63 6.13
96 97 2.169978 ACTGGACCTAGTAAAATCCGCC 59.830 50.000 0.00 0.00 33.63 6.13
97 98 3.538634 ACTGGACCTAGTAAAATCCGC 57.461 47.619 0.00 0.00 33.63 5.54
98 99 8.174733 TCTATAACTGGACCTAGTAAAATCCG 57.825 38.462 0.00 0.00 33.63 4.18
99 100 9.930693 CATCTATAACTGGACCTAGTAAAATCC 57.069 37.037 0.00 0.00 0.00 3.01
100 101 9.425577 GCATCTATAACTGGACCTAGTAAAATC 57.574 37.037 0.00 0.00 0.00 2.17
101 102 9.160412 AGCATCTATAACTGGACCTAGTAAAAT 57.840 33.333 0.00 0.00 0.00 1.82
102 103 8.548880 AGCATCTATAACTGGACCTAGTAAAA 57.451 34.615 0.00 0.00 0.00 1.52
103 104 8.179509 GAGCATCTATAACTGGACCTAGTAAA 57.820 38.462 0.00 0.00 0.00 2.01
104 105 7.762588 GAGCATCTATAACTGGACCTAGTAA 57.237 40.000 0.00 0.00 0.00 2.24
122 123 9.688592 CCATTCAAAAGGATAATTTAGAGCATC 57.311 33.333 0.00 0.00 0.00 3.91
123 124 9.205513 ACCATTCAAAAGGATAATTTAGAGCAT 57.794 29.630 0.00 0.00 0.00 3.79
124 125 8.593945 ACCATTCAAAAGGATAATTTAGAGCA 57.406 30.769 0.00 0.00 0.00 4.26
125 126 9.875691 AAACCATTCAAAAGGATAATTTAGAGC 57.124 29.630 0.00 0.00 0.00 4.09
131 132 9.506018 CCTTCAAAACCATTCAAAAGGATAATT 57.494 29.630 0.00 0.00 0.00 1.40
132 133 8.659527 ACCTTCAAAACCATTCAAAAGGATAAT 58.340 29.630 5.32 0.00 0.00 1.28
133 134 8.028652 ACCTTCAAAACCATTCAAAAGGATAA 57.971 30.769 5.32 0.00 0.00 1.75
134 135 7.610580 ACCTTCAAAACCATTCAAAAGGATA 57.389 32.000 5.32 0.00 0.00 2.59
135 136 6.499106 ACCTTCAAAACCATTCAAAAGGAT 57.501 33.333 5.32 0.00 0.00 3.24
136 137 5.948742 ACCTTCAAAACCATTCAAAAGGA 57.051 34.783 5.32 0.00 0.00 3.36
137 138 7.249858 CAAAACCTTCAAAACCATTCAAAAGG 58.750 34.615 0.00 0.00 0.00 3.11
138 139 6.746822 GCAAAACCTTCAAAACCATTCAAAAG 59.253 34.615 0.00 0.00 0.00 2.27
139 140 6.432472 AGCAAAACCTTCAAAACCATTCAAAA 59.568 30.769 0.00 0.00 0.00 2.44
140 141 5.942826 AGCAAAACCTTCAAAACCATTCAAA 59.057 32.000 0.00 0.00 0.00 2.69
141 142 5.495640 AGCAAAACCTTCAAAACCATTCAA 58.504 33.333 0.00 0.00 0.00 2.69
142 143 5.096443 AGCAAAACCTTCAAAACCATTCA 57.904 34.783 0.00 0.00 0.00 2.57
143 144 7.546778 TTAAGCAAAACCTTCAAAACCATTC 57.453 32.000 0.00 0.00 0.00 2.67
144 145 7.929941 TTTAAGCAAAACCTTCAAAACCATT 57.070 28.000 0.00 0.00 0.00 3.16
145 146 9.620259 TTATTTAAGCAAAACCTTCAAAACCAT 57.380 25.926 0.00 0.00 0.00 3.55
146 147 9.449719 TTTATTTAAGCAAAACCTTCAAAACCA 57.550 25.926 0.00 0.00 0.00 3.67
178 179 6.872920 TGACATTTAGCTTCAAAACCACTTT 58.127 32.000 0.00 0.00 0.00 2.66
179 180 6.463995 TGACATTTAGCTTCAAAACCACTT 57.536 33.333 0.00 0.00 0.00 3.16
193 194 7.636150 AGACTTCCCATGATTTGACATTTAG 57.364 36.000 0.00 0.00 0.00 1.85
196 197 6.012113 TCAAGACTTCCCATGATTTGACATT 58.988 36.000 0.00 0.00 0.00 2.71
198 199 4.984295 TCAAGACTTCCCATGATTTGACA 58.016 39.130 0.00 0.00 0.00 3.58
199 200 7.814264 ATATCAAGACTTCCCATGATTTGAC 57.186 36.000 0.00 0.00 34.54 3.18
200 201 7.503566 GGAATATCAAGACTTCCCATGATTTGA 59.496 37.037 0.00 0.00 34.54 2.69
201 202 7.655490 GGAATATCAAGACTTCCCATGATTTG 58.345 38.462 0.00 0.00 34.54 2.32
235 238 1.228429 TCCAGACCGCCTTTTTGGG 60.228 57.895 0.00 0.00 36.00 4.12
236 239 0.821711 TGTCCAGACCGCCTTTTTGG 60.822 55.000 0.00 0.00 39.35 3.28
237 240 1.028905 TTGTCCAGACCGCCTTTTTG 58.971 50.000 0.00 0.00 0.00 2.44
251 254 2.028748 TCAACGCCCTAGTAAGTTGTCC 60.029 50.000 16.00 0.00 43.00 4.02
282 286 3.389925 AATCAACGGTTCGTCCTGTAA 57.610 42.857 0.00 0.00 39.99 2.41
290 294 0.921347 CGAGCCTAATCAACGGTTCG 59.079 55.000 0.00 0.00 45.07 3.95
325 329 6.095440 TCAAAAAGTTTGATATGGCCTAGCTC 59.905 38.462 3.32 0.00 0.00 4.09
338 342 8.879342 TTTGTTTCTGAAGTCAAAAAGTTTGA 57.121 26.923 15.25 0.00 0.00 2.69
344 348 8.824159 TGTCATTTTGTTTCTGAAGTCAAAAA 57.176 26.923 24.47 15.57 41.07 1.94
376 380 9.533253 CTTTCTTTTCTTTTGCCTAGATGAAAA 57.467 29.630 0.00 0.00 33.97 2.29
377 381 8.695456 ACTTTCTTTTCTTTTGCCTAGATGAAA 58.305 29.630 0.00 0.00 0.00 2.69
378 382 8.237811 ACTTTCTTTTCTTTTGCCTAGATGAA 57.762 30.769 0.00 0.00 0.00 2.57
379 383 7.823745 ACTTTCTTTTCTTTTGCCTAGATGA 57.176 32.000 0.00 0.00 0.00 2.92
380 384 8.137437 TGAACTTTCTTTTCTTTTGCCTAGATG 58.863 33.333 0.00 0.00 0.00 2.90
381 385 8.237811 TGAACTTTCTTTTCTTTTGCCTAGAT 57.762 30.769 0.00 0.00 0.00 1.98
398 402 8.454106 TCTCTAGCAGCATTATTTTGAACTTTC 58.546 33.333 0.00 0.00 0.00 2.62
409 415 7.831193 TCCTTTTCTTTTCTCTAGCAGCATTAT 59.169 33.333 0.00 0.00 0.00 1.28
420 426 5.183228 TGTGAACGTCCTTTTCTTTTCTCT 58.817 37.500 0.00 0.00 0.00 3.10
471 477 1.991070 GATGATGGGGACTGGATGGAT 59.009 52.381 0.00 0.00 0.00 3.41
568 574 1.084370 CGGCCGAGTGGTTTCAGATC 61.084 60.000 24.07 0.00 37.67 2.75
864 873 2.864343 GTGAGTGTGAGTGTGGTGTTAC 59.136 50.000 0.00 0.00 0.00 2.50
915 924 1.757682 ACCGAGAGAGAGACATCACC 58.242 55.000 0.00 0.00 0.00 4.02
1040 1049 3.160047 CATCCTCCTCCTGCCGCT 61.160 66.667 0.00 0.00 0.00 5.52
1043 1052 2.750657 CCACCATCCTCCTCCTGCC 61.751 68.421 0.00 0.00 0.00 4.85
1045 1054 2.074948 CCCCACCATCCTCCTCCTG 61.075 68.421 0.00 0.00 0.00 3.86
1051 1066 0.404040 TTGACAACCCCACCATCCTC 59.596 55.000 0.00 0.00 0.00 3.71
1068 1083 3.781307 TCCACCCGCCCGATCTTG 61.781 66.667 0.00 0.00 0.00 3.02
1083 1098 4.057428 AGCTCCTGCACGTCGTCC 62.057 66.667 0.00 0.00 42.74 4.79
1319 1334 4.212214 GGATGATTAACGAAGTGATCCAGC 59.788 45.833 0.00 0.00 45.00 4.85
1323 1338 7.172190 ACATGATGGATGATTAACGAAGTGATC 59.828 37.037 0.00 0.00 36.88 2.92
1868 2326 3.314331 CCGTCCCTGAGCACCTGT 61.314 66.667 0.00 0.00 0.00 4.00
1958 2417 1.626654 CGCTCTTGTACCTGCCGTTG 61.627 60.000 0.00 0.00 0.00 4.10
2270 2729 7.571026 CAGATGCTTCAGGAATCTTAATTACG 58.429 38.462 2.07 0.00 38.23 3.18
2376 2835 7.095187 CCTCGCTACAAAGACAAGAAAAAGTAT 60.095 37.037 0.00 0.00 0.00 2.12
2431 2891 2.034558 CGTGAACACCAGCTTCCAATTT 59.965 45.455 0.00 0.00 0.00 1.82
2488 2948 6.830736 AGTGTTTGCTTTTCAATTGTCAAAC 58.169 32.000 21.27 21.27 41.86 2.93
2489 2949 7.432350 AAGTGTTTGCTTTTCAATTGTCAAA 57.568 28.000 5.13 5.50 34.12 2.69
2516 2976 7.685481 TGTTACCTTTTCCTAGTGATGAATGA 58.315 34.615 0.00 0.00 0.00 2.57
2520 2980 5.488341 GCTGTTACCTTTTCCTAGTGATGA 58.512 41.667 0.00 0.00 0.00 2.92
2560 3020 1.555967 TGCTTAGCCCATGGTTTTCC 58.444 50.000 11.73 0.00 41.14 3.13
2588 3048 9.366216 GGAAGTGTTGAAACTCTTTACATTTTT 57.634 29.630 10.78 0.00 41.30 1.94
2635 3095 1.274728 GTGATCCTCGCAGCATATCCT 59.725 52.381 0.00 0.00 0.00 3.24
2740 3201 4.097863 GCCTTGGTGCGCCGTAAC 62.098 66.667 12.58 0.00 37.67 2.50
2761 3222 3.699038 TGTTAAGGTTGCAAGTTGCTCTT 59.301 39.130 27.17 25.17 45.31 2.85
2781 3242 6.783708 TTTATTCCAGGTCAAGTTTGTTGT 57.216 33.333 0.00 0.00 0.00 3.32
2803 3264 4.050553 CTGTGTTTGGATGCGTTTTCATT 58.949 39.130 0.00 0.00 0.00 2.57
2855 3317 3.580458 ACTGACAGAGTATGGTTGAAGCT 59.420 43.478 10.08 0.00 30.86 3.74
2863 3325 3.961480 TTGTGGACTGACAGAGTATGG 57.039 47.619 10.08 0.00 33.83 2.74
2869 3331 5.290493 ACACTTATTTGTGGACTGACAGA 57.710 39.130 10.08 0.00 41.84 3.41
2870 3332 7.011950 TGTTTACACTTATTTGTGGACTGACAG 59.988 37.037 0.00 0.00 41.84 3.51
2871 3333 6.824196 TGTTTACACTTATTTGTGGACTGACA 59.176 34.615 0.00 0.00 41.84 3.58
2872 3334 7.254227 TGTTTACACTTATTTGTGGACTGAC 57.746 36.000 0.00 0.00 41.84 3.51
2873 3335 9.562408 TTATGTTTACACTTATTTGTGGACTGA 57.438 29.630 0.00 0.00 41.84 3.41
2928 3390 6.650390 GGATTGCACCTTCACAATACATTTTT 59.350 34.615 0.00 0.00 37.13 1.94
2929 3391 6.165577 GGATTGCACCTTCACAATACATTTT 58.834 36.000 0.00 0.00 37.13 1.82
2930 3392 5.245751 TGGATTGCACCTTCACAATACATTT 59.754 36.000 0.00 0.00 41.17 2.32
2931 3393 4.771577 TGGATTGCACCTTCACAATACATT 59.228 37.500 0.00 0.00 41.17 2.71
2932 3394 4.158394 GTGGATTGCACCTTCACAATACAT 59.842 41.667 4.11 0.00 46.09 2.29
2933 3395 3.505680 GTGGATTGCACCTTCACAATACA 59.494 43.478 0.00 0.00 43.25 2.29
2934 3396 3.119495 GGTGGATTGCACCTTCACAATAC 60.119 47.826 19.15 0.00 39.52 1.89
2935 3397 3.088532 GGTGGATTGCACCTTCACAATA 58.911 45.455 19.15 0.00 39.52 1.90
2936 3398 1.895131 GGTGGATTGCACCTTCACAAT 59.105 47.619 19.15 0.00 39.52 2.71
2937 3399 1.327303 GGTGGATTGCACCTTCACAA 58.673 50.000 19.15 0.00 39.52 3.33
2938 3400 0.184692 TGGTGGATTGCACCTTCACA 59.815 50.000 25.30 4.67 42.92 3.58
2939 3401 1.474077 GATGGTGGATTGCACCTTCAC 59.526 52.381 27.59 14.45 42.78 3.18
2940 3402 1.355381 AGATGGTGGATTGCACCTTCA 59.645 47.619 31.27 14.78 44.52 3.02
2941 3403 2.019984 GAGATGGTGGATTGCACCTTC 58.980 52.381 26.17 26.17 43.27 3.46
2942 3404 1.637553 AGAGATGGTGGATTGCACCTT 59.362 47.619 25.30 19.98 42.92 3.50
2943 3405 1.211457 GAGAGATGGTGGATTGCACCT 59.789 52.381 25.30 12.76 42.92 4.00
2944 3406 1.211457 AGAGAGATGGTGGATTGCACC 59.789 52.381 19.55 19.55 42.80 5.01
2945 3407 2.559440 GAGAGAGATGGTGGATTGCAC 58.441 52.381 0.00 0.00 0.00 4.57
2946 3408 1.487976 GGAGAGAGATGGTGGATTGCA 59.512 52.381 0.00 0.00 0.00 4.08
2947 3409 1.767681 AGGAGAGAGATGGTGGATTGC 59.232 52.381 0.00 0.00 0.00 3.56
2948 3410 3.307506 AGAGGAGAGAGATGGTGGATTG 58.692 50.000 0.00 0.00 0.00 2.67
2949 3411 3.704545 AGAGGAGAGAGATGGTGGATT 57.295 47.619 0.00 0.00 0.00 3.01
2950 3412 3.704545 AAGAGGAGAGAGATGGTGGAT 57.295 47.619 0.00 0.00 0.00 3.41
2951 3413 3.481559 AAAGAGGAGAGAGATGGTGGA 57.518 47.619 0.00 0.00 0.00 4.02
2952 3414 5.885449 ATTAAAGAGGAGAGAGATGGTGG 57.115 43.478 0.00 0.00 0.00 4.61
2953 3415 7.213678 GGTAATTAAAGAGGAGAGAGATGGTG 58.786 42.308 0.00 0.00 0.00 4.17
2954 3416 6.041069 CGGTAATTAAAGAGGAGAGAGATGGT 59.959 42.308 0.00 0.00 0.00 3.55
2955 3417 6.451393 CGGTAATTAAAGAGGAGAGAGATGG 58.549 44.000 0.00 0.00 0.00 3.51
2956 3418 5.923684 GCGGTAATTAAAGAGGAGAGAGATG 59.076 44.000 0.00 0.00 0.00 2.90
2957 3419 5.598830 TGCGGTAATTAAAGAGGAGAGAGAT 59.401 40.000 0.00 0.00 0.00 2.75
2958 3420 4.954202 TGCGGTAATTAAAGAGGAGAGAGA 59.046 41.667 0.00 0.00 0.00 3.10
2959 3421 5.044558 GTGCGGTAATTAAAGAGGAGAGAG 58.955 45.833 0.00 0.00 0.00 3.20
2960 3422 4.710375 AGTGCGGTAATTAAAGAGGAGAGA 59.290 41.667 0.00 0.00 0.00 3.10
2961 3423 5.012328 AGTGCGGTAATTAAAGAGGAGAG 57.988 43.478 0.00 0.00 0.00 3.20
2962 3424 4.142004 GGAGTGCGGTAATTAAAGAGGAGA 60.142 45.833 0.00 0.00 0.00 3.71
2963 3425 4.120589 GGAGTGCGGTAATTAAAGAGGAG 58.879 47.826 0.00 0.00 0.00 3.69
2964 3426 3.118519 GGGAGTGCGGTAATTAAAGAGGA 60.119 47.826 0.00 0.00 0.00 3.71
2965 3427 3.203716 GGGAGTGCGGTAATTAAAGAGG 58.796 50.000 0.00 0.00 0.00 3.69
2966 3428 3.869065 TGGGAGTGCGGTAATTAAAGAG 58.131 45.455 0.00 0.00 0.00 2.85
2967 3429 3.985019 TGGGAGTGCGGTAATTAAAGA 57.015 42.857 0.00 0.00 0.00 2.52
2968 3430 4.733523 GCATTGGGAGTGCGGTAATTAAAG 60.734 45.833 0.00 0.00 32.29 1.85
2969 3431 3.129638 GCATTGGGAGTGCGGTAATTAAA 59.870 43.478 0.00 0.00 32.29 1.52
2970 3432 2.685897 GCATTGGGAGTGCGGTAATTAA 59.314 45.455 0.00 0.00 32.29 1.40
2971 3433 2.294074 GCATTGGGAGTGCGGTAATTA 58.706 47.619 0.00 0.00 32.29 1.40
2972 3434 1.102978 GCATTGGGAGTGCGGTAATT 58.897 50.000 0.00 0.00 32.29 1.40
2973 3435 2.793831 GCATTGGGAGTGCGGTAAT 58.206 52.632 0.00 0.00 32.29 1.89
2974 3436 4.312052 GCATTGGGAGTGCGGTAA 57.688 55.556 0.00 0.00 32.29 2.85
2979 3441 1.026718 ACTTAGCGCATTGGGAGTGC 61.027 55.000 11.47 0.00 42.55 4.40
2980 3442 0.729116 CACTTAGCGCATTGGGAGTG 59.271 55.000 11.47 10.03 0.00 3.51
2981 3443 1.026718 GCACTTAGCGCATTGGGAGT 61.027 55.000 11.47 0.55 0.00 3.85
2982 3444 1.723870 GCACTTAGCGCATTGGGAG 59.276 57.895 11.47 0.00 0.00 4.30
2983 3445 3.903783 GCACTTAGCGCATTGGGA 58.096 55.556 11.47 0.00 0.00 4.37
2992 3454 5.171476 TCTCACTTTCTACATGCACTTAGC 58.829 41.667 0.00 0.00 45.96 3.09
2993 3455 7.062839 GTCTTCTCACTTTCTACATGCACTTAG 59.937 40.741 0.00 0.00 0.00 2.18
2994 3456 6.868864 GTCTTCTCACTTTCTACATGCACTTA 59.131 38.462 0.00 0.00 0.00 2.24
2995 3457 5.698545 GTCTTCTCACTTTCTACATGCACTT 59.301 40.000 0.00 0.00 0.00 3.16
2996 3458 5.233988 GTCTTCTCACTTTCTACATGCACT 58.766 41.667 0.00 0.00 0.00 4.40
2997 3459 4.390297 GGTCTTCTCACTTTCTACATGCAC 59.610 45.833 0.00 0.00 0.00 4.57
2998 3460 4.040339 TGGTCTTCTCACTTTCTACATGCA 59.960 41.667 0.00 0.00 0.00 3.96
2999 3461 4.569943 TGGTCTTCTCACTTTCTACATGC 58.430 43.478 0.00 0.00 0.00 4.06
3000 3462 6.091849 CACATGGTCTTCTCACTTTCTACATG 59.908 42.308 0.00 0.00 38.27 3.21
3001 3463 6.169094 CACATGGTCTTCTCACTTTCTACAT 58.831 40.000 0.00 0.00 0.00 2.29
3002 3464 5.070446 ACACATGGTCTTCTCACTTTCTACA 59.930 40.000 0.00 0.00 0.00 2.74
3003 3465 5.542779 ACACATGGTCTTCTCACTTTCTAC 58.457 41.667 0.00 0.00 0.00 2.59
3004 3466 5.808366 ACACATGGTCTTCTCACTTTCTA 57.192 39.130 0.00 0.00 0.00 2.10
3005 3467 4.696479 ACACATGGTCTTCTCACTTTCT 57.304 40.909 0.00 0.00 0.00 2.52
3006 3468 4.816385 TCAACACATGGTCTTCTCACTTTC 59.184 41.667 0.00 0.00 0.00 2.62
3007 3469 4.780815 TCAACACATGGTCTTCTCACTTT 58.219 39.130 0.00 0.00 0.00 2.66
3008 3470 4.422073 TCAACACATGGTCTTCTCACTT 57.578 40.909 0.00 0.00 0.00 3.16
3009 3471 4.422073 TTCAACACATGGTCTTCTCACT 57.578 40.909 0.00 0.00 0.00 3.41
3010 3472 4.516698 ACATTCAACACATGGTCTTCTCAC 59.483 41.667 0.00 0.00 0.00 3.51
3011 3473 4.717877 ACATTCAACACATGGTCTTCTCA 58.282 39.130 0.00 0.00 0.00 3.27
3012 3474 6.801539 TTACATTCAACACATGGTCTTCTC 57.198 37.500 0.00 0.00 0.00 2.87
3013 3475 7.309377 CCAATTACATTCAACACATGGTCTTCT 60.309 37.037 0.00 0.00 0.00 2.85
3014 3476 6.808212 CCAATTACATTCAACACATGGTCTTC 59.192 38.462 0.00 0.00 0.00 2.87
3015 3477 6.267471 ACCAATTACATTCAACACATGGTCTT 59.733 34.615 0.00 0.00 33.59 3.01
3016 3478 5.774690 ACCAATTACATTCAACACATGGTCT 59.225 36.000 0.00 0.00 33.59 3.85
3017 3479 6.024552 ACCAATTACATTCAACACATGGTC 57.975 37.500 0.00 0.00 33.59 4.02
3018 3480 5.774690 AGACCAATTACATTCAACACATGGT 59.225 36.000 0.00 0.00 41.10 3.55
3019 3481 6.271488 AGACCAATTACATTCAACACATGG 57.729 37.500 0.00 0.00 0.00 3.66
3020 3482 7.369607 TCAAGACCAATTACATTCAACACATG 58.630 34.615 0.00 0.00 0.00 3.21
3021 3483 7.523293 TCAAGACCAATTACATTCAACACAT 57.477 32.000 0.00 0.00 0.00 3.21
3022 3484 6.951062 TCAAGACCAATTACATTCAACACA 57.049 33.333 0.00 0.00 0.00 3.72
3023 3485 9.341899 GTAATCAAGACCAATTACATTCAACAC 57.658 33.333 0.00 0.00 37.96 3.32
3024 3486 9.295825 AGTAATCAAGACCAATTACATTCAACA 57.704 29.630 7.70 0.00 39.65 3.33
3025 3487 9.559958 CAGTAATCAAGACCAATTACATTCAAC 57.440 33.333 7.70 0.00 39.65 3.18
3026 3488 9.295825 ACAGTAATCAAGACCAATTACATTCAA 57.704 29.630 7.70 0.00 39.65 2.69
3027 3489 8.729756 CACAGTAATCAAGACCAATTACATTCA 58.270 33.333 7.70 0.00 39.65 2.57
3028 3490 7.698130 GCACAGTAATCAAGACCAATTACATTC 59.302 37.037 7.70 0.00 39.65 2.67
3029 3491 7.538575 GCACAGTAATCAAGACCAATTACATT 58.461 34.615 7.70 0.00 39.65 2.71
3030 3492 6.183360 CGCACAGTAATCAAGACCAATTACAT 60.183 38.462 7.70 0.00 39.65 2.29
3031 3493 5.121611 CGCACAGTAATCAAGACCAATTACA 59.878 40.000 7.70 0.00 39.65 2.41
3032 3494 5.350365 TCGCACAGTAATCAAGACCAATTAC 59.650 40.000 0.00 0.00 38.20 1.89
3033 3495 5.483811 TCGCACAGTAATCAAGACCAATTA 58.516 37.500 0.00 0.00 0.00 1.40
3034 3496 4.323417 TCGCACAGTAATCAAGACCAATT 58.677 39.130 0.00 0.00 0.00 2.32
3035 3497 3.935203 CTCGCACAGTAATCAAGACCAAT 59.065 43.478 0.00 0.00 0.00 3.16
3036 3498 3.006430 TCTCGCACAGTAATCAAGACCAA 59.994 43.478 0.00 0.00 0.00 3.67
3037 3499 2.560981 TCTCGCACAGTAATCAAGACCA 59.439 45.455 0.00 0.00 0.00 4.02
3038 3500 3.232213 TCTCGCACAGTAATCAAGACC 57.768 47.619 0.00 0.00 0.00 3.85
3039 3501 4.486090 TCTTCTCGCACAGTAATCAAGAC 58.514 43.478 0.00 0.00 0.00 3.01
3040 3502 4.459337 TCTCTTCTCGCACAGTAATCAAGA 59.541 41.667 0.00 0.00 0.00 3.02
3041 3503 4.738124 TCTCTTCTCGCACAGTAATCAAG 58.262 43.478 0.00 0.00 0.00 3.02
3042 3504 4.459337 TCTCTCTTCTCGCACAGTAATCAA 59.541 41.667 0.00 0.00 0.00 2.57
3043 3505 4.010349 TCTCTCTTCTCGCACAGTAATCA 58.990 43.478 0.00 0.00 0.00 2.57
3044 3506 4.624336 TCTCTCTTCTCGCACAGTAATC 57.376 45.455 0.00 0.00 0.00 1.75
3045 3507 5.164954 GTTTCTCTCTTCTCGCACAGTAAT 58.835 41.667 0.00 0.00 0.00 1.89
3046 3508 4.037565 TGTTTCTCTCTTCTCGCACAGTAA 59.962 41.667 0.00 0.00 0.00 2.24
3047 3509 3.568430 TGTTTCTCTCTTCTCGCACAGTA 59.432 43.478 0.00 0.00 0.00 2.74
3048 3510 2.362397 TGTTTCTCTCTTCTCGCACAGT 59.638 45.455 0.00 0.00 0.00 3.55
3049 3511 3.018598 TGTTTCTCTCTTCTCGCACAG 57.981 47.619 0.00 0.00 0.00 3.66
3050 3512 3.667497 ATGTTTCTCTCTTCTCGCACA 57.333 42.857 0.00 0.00 0.00 4.57
3051 3513 4.999751 AAATGTTTCTCTCTTCTCGCAC 57.000 40.909 0.00 0.00 0.00 5.34
3072 3534 7.106439 TCCAATGCACTTCAAAGTAGAAAAA 57.894 32.000 0.00 0.00 37.08 1.94
3073 3535 6.707440 TCCAATGCACTTCAAAGTAGAAAA 57.293 33.333 0.00 0.00 37.08 2.29
3074 3536 6.545666 TCTTCCAATGCACTTCAAAGTAGAAA 59.454 34.615 0.00 0.00 37.08 2.52
3075 3537 6.061441 TCTTCCAATGCACTTCAAAGTAGAA 58.939 36.000 0.00 0.00 37.08 2.10
3076 3538 5.620206 TCTTCCAATGCACTTCAAAGTAGA 58.380 37.500 0.00 0.00 37.08 2.59
3077 3539 5.947228 TCTTCCAATGCACTTCAAAGTAG 57.053 39.130 0.00 0.00 37.08 2.57
3078 3540 7.394016 TCTATCTTCCAATGCACTTCAAAGTA 58.606 34.615 0.00 0.00 37.08 2.24
3079 3541 6.240894 TCTATCTTCCAATGCACTTCAAAGT 58.759 36.000 0.00 0.00 40.60 2.66
3080 3542 6.748333 TCTATCTTCCAATGCACTTCAAAG 57.252 37.500 0.00 0.00 0.00 2.77
3081 3543 7.523293 TTTCTATCTTCCAATGCACTTCAAA 57.477 32.000 0.00 0.00 0.00 2.69
3082 3544 7.707624 ATTTCTATCTTCCAATGCACTTCAA 57.292 32.000 0.00 0.00 0.00 2.69
3083 3545 8.049117 ACTATTTCTATCTTCCAATGCACTTCA 58.951 33.333 0.00 0.00 0.00 3.02
3084 3546 8.443953 ACTATTTCTATCTTCCAATGCACTTC 57.556 34.615 0.00 0.00 0.00 3.01
3085 3547 9.331282 GTACTATTTCTATCTTCCAATGCACTT 57.669 33.333 0.00 0.00 0.00 3.16
3086 3548 8.486210 TGTACTATTTCTATCTTCCAATGCACT 58.514 33.333 0.00 0.00 0.00 4.40
3087 3549 8.552034 GTGTACTATTTCTATCTTCCAATGCAC 58.448 37.037 0.00 0.00 0.00 4.57
3088 3550 8.486210 AGTGTACTATTTCTATCTTCCAATGCA 58.514 33.333 0.00 0.00 0.00 3.96
3089 3551 8.894768 AGTGTACTATTTCTATCTTCCAATGC 57.105 34.615 0.00 0.00 0.00 3.56
3097 3559 9.877178 CCACAAAAGAGTGTACTATTTCTATCT 57.123 33.333 5.24 0.00 36.49 1.98
3098 3560 9.871238 TCCACAAAAGAGTGTACTATTTCTATC 57.129 33.333 5.24 0.00 36.49 2.08
3099 3561 9.654663 GTCCACAAAAGAGTGTACTATTTCTAT 57.345 33.333 5.24 0.00 36.49 1.98
3100 3562 8.644216 TGTCCACAAAAGAGTGTACTATTTCTA 58.356 33.333 5.24 0.00 36.49 2.10
3101 3563 7.506114 TGTCCACAAAAGAGTGTACTATTTCT 58.494 34.615 5.24 0.00 36.49 2.52
3102 3564 7.724305 TGTCCACAAAAGAGTGTACTATTTC 57.276 36.000 5.24 0.00 36.49 2.17
3103 3565 8.514330 TTTGTCCACAAAAGAGTGTACTATTT 57.486 30.769 2.29 0.00 42.26 1.40
3119 3581 9.388506 ACATTTGACATTTAAAATTTGTCCACA 57.611 25.926 14.73 3.25 39.17 4.17
3133 3595 9.859427 CCATGAATAAGTGTACATTTGACATTT 57.141 29.630 13.41 0.65 32.30 2.32
3134 3596 9.241919 TCCATGAATAAGTGTACATTTGACATT 57.758 29.630 13.41 5.72 0.00 2.71
3135 3597 8.677300 GTCCATGAATAAGTGTACATTTGACAT 58.323 33.333 13.41 11.89 0.00 3.06
3136 3598 7.148490 CGTCCATGAATAAGTGTACATTTGACA 60.148 37.037 13.41 10.38 0.00 3.58
3137 3599 7.180079 CGTCCATGAATAAGTGTACATTTGAC 58.820 38.462 13.41 9.01 0.00 3.18
3138 3600 6.315144 CCGTCCATGAATAAGTGTACATTTGA 59.685 38.462 13.41 0.00 0.00 2.69
3139 3601 6.315144 TCCGTCCATGAATAAGTGTACATTTG 59.685 38.462 13.41 0.00 0.00 2.32
3140 3602 6.411376 TCCGTCCATGAATAAGTGTACATTT 58.589 36.000 8.77 8.77 0.00 2.32
3141 3603 5.984725 TCCGTCCATGAATAAGTGTACATT 58.015 37.500 0.00 0.00 0.00 2.71
3142 3604 5.362717 TCTCCGTCCATGAATAAGTGTACAT 59.637 40.000 0.00 0.00 0.00 2.29
3143 3605 4.707934 TCTCCGTCCATGAATAAGTGTACA 59.292 41.667 0.00 0.00 0.00 2.90
3144 3606 5.067413 TCTCTCCGTCCATGAATAAGTGTAC 59.933 44.000 0.00 0.00 0.00 2.90
3145 3607 5.198207 TCTCTCCGTCCATGAATAAGTGTA 58.802 41.667 0.00 0.00 0.00 2.90
3146 3608 4.023980 TCTCTCCGTCCATGAATAAGTGT 58.976 43.478 0.00 0.00 0.00 3.55
3147 3609 4.098654 ACTCTCTCCGTCCATGAATAAGTG 59.901 45.833 0.00 0.00 0.00 3.16
3148 3610 4.282496 ACTCTCTCCGTCCATGAATAAGT 58.718 43.478 0.00 0.00 0.00 2.24
3149 3611 4.927978 ACTCTCTCCGTCCATGAATAAG 57.072 45.455 0.00 0.00 0.00 1.73
3150 3612 5.067413 GTGTACTCTCTCCGTCCATGAATAA 59.933 44.000 0.00 0.00 0.00 1.40
3151 3613 4.579340 GTGTACTCTCTCCGTCCATGAATA 59.421 45.833 0.00 0.00 0.00 1.75
3152 3614 3.381908 GTGTACTCTCTCCGTCCATGAAT 59.618 47.826 0.00 0.00 0.00 2.57
3153 3615 2.753452 GTGTACTCTCTCCGTCCATGAA 59.247 50.000 0.00 0.00 0.00 2.57
3154 3616 2.290705 TGTGTACTCTCTCCGTCCATGA 60.291 50.000 0.00 0.00 0.00 3.07
3155 3617 2.092323 TGTGTACTCTCTCCGTCCATG 58.908 52.381 0.00 0.00 0.00 3.66
3156 3618 2.492484 GTTGTGTACTCTCTCCGTCCAT 59.508 50.000 0.00 0.00 0.00 3.41
3157 3619 1.884579 GTTGTGTACTCTCTCCGTCCA 59.115 52.381 0.00 0.00 0.00 4.02
3158 3620 1.884579 TGTTGTGTACTCTCTCCGTCC 59.115 52.381 0.00 0.00 0.00 4.79
3159 3621 3.190744 TGATGTTGTGTACTCTCTCCGTC 59.809 47.826 0.00 0.00 0.00 4.79
3160 3622 3.154710 TGATGTTGTGTACTCTCTCCGT 58.845 45.455 0.00 0.00 0.00 4.69
3161 3623 3.440522 TCTGATGTTGTGTACTCTCTCCG 59.559 47.826 0.00 0.00 0.00 4.63
3162 3624 5.184096 TCTTCTGATGTTGTGTACTCTCTCC 59.816 44.000 0.00 0.00 0.00 3.71
3163 3625 6.260870 TCTTCTGATGTTGTGTACTCTCTC 57.739 41.667 0.00 0.00 0.00 3.20
3164 3626 5.336372 GCTCTTCTGATGTTGTGTACTCTCT 60.336 44.000 0.00 0.00 0.00 3.10
3165 3627 4.862018 GCTCTTCTGATGTTGTGTACTCTC 59.138 45.833 0.00 0.00 0.00 3.20
3166 3628 4.281941 TGCTCTTCTGATGTTGTGTACTCT 59.718 41.667 0.00 0.00 0.00 3.24
3167 3629 4.387256 GTGCTCTTCTGATGTTGTGTACTC 59.613 45.833 0.00 0.00 0.00 2.59
3168 3630 4.202253 TGTGCTCTTCTGATGTTGTGTACT 60.202 41.667 0.00 0.00 0.00 2.73
3169 3631 4.058124 TGTGCTCTTCTGATGTTGTGTAC 58.942 43.478 0.00 0.00 0.00 2.90
3170 3632 4.335400 TGTGCTCTTCTGATGTTGTGTA 57.665 40.909 0.00 0.00 0.00 2.90
3171 3633 3.198409 TGTGCTCTTCTGATGTTGTGT 57.802 42.857 0.00 0.00 0.00 3.72
3172 3634 4.556942 TTTGTGCTCTTCTGATGTTGTG 57.443 40.909 0.00 0.00 0.00 3.33
3173 3635 5.117355 CATTTGTGCTCTTCTGATGTTGT 57.883 39.130 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.