Multiple sequence alignment - TraesCS3D01G449900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G449900 chr3D 100.000 4791 0 0 1 4791 557927941 557923151 0.000000e+00 8848.0
1 TraesCS3D01G449900 chr3D 83.976 337 32 10 4319 4638 557917096 557916765 2.170000e-78 303.0
2 TraesCS3D01G449900 chr3D 90.323 62 5 1 164 224 556024146 556024085 3.970000e-11 80.5
3 TraesCS3D01G449900 chr3D 94.340 53 0 1 1782 1831 557926010 557925958 1.430000e-10 78.7
4 TraesCS3D01G449900 chr3D 94.340 53 0 1 1932 1984 557926160 557926111 1.430000e-10 78.7
5 TraesCS3D01G449900 chr3D 83.133 83 10 4 138 216 603646941 603647023 6.650000e-09 73.1
6 TraesCS3D01G449900 chrUn 90.587 2539 139 49 2285 4791 295855619 295853149 0.000000e+00 3273.0
7 TraesCS3D01G449900 chrUn 89.237 799 43 17 368 1160 351523248 351522487 0.000000e+00 959.0
8 TraesCS3D01G449900 chrUn 93.474 475 19 4 1162 1624 473829986 473830460 0.000000e+00 695.0
9 TraesCS3D01G449900 chrUn 95.851 241 9 1 1624 1863 295856188 295855948 5.810000e-104 388.0
10 TraesCS3D01G449900 chrUn 85.311 354 18 11 1932 2258 295856029 295855683 7.680000e-88 335.0
11 TraesCS3D01G449900 chrUn 94.853 136 3 1 1 132 351523508 351523373 4.860000e-50 209.0
12 TraesCS3D01G449900 chrUn 81.176 85 11 4 1855 1936 138528219 138528137 4.000000e-06 63.9
13 TraesCS3D01G449900 chrUn 81.176 85 11 4 1855 1936 172078488 172078570 4.000000e-06 63.9
14 TraesCS3D01G449900 chrUn 81.176 85 11 4 1855 1936 286970494 286970412 4.000000e-06 63.9
15 TraesCS3D01G449900 chr3B 91.321 1544 67 28 2286 3802 740545231 740543728 0.000000e+00 2047.0
16 TraesCS3D01G449900 chr3B 87.816 1346 104 25 368 1664 740547353 740546019 0.000000e+00 1522.0
17 TraesCS3D01G449900 chr3B 90.441 408 22 11 4397 4791 740543278 740542875 5.490000e-144 521.0
18 TraesCS3D01G449900 chr3B 96.538 260 9 0 2020 2279 740545549 740545290 9.530000e-117 431.0
19 TraesCS3D01G449900 chr3B 82.688 491 34 19 3854 4344 740543723 740543284 5.810000e-104 388.0
20 TraesCS3D01G449900 chr3B 84.956 339 29 12 4317 4638 740518472 740518139 1.660000e-84 324.0
21 TraesCS3D01G449900 chr3B 82.500 400 39 12 3746 4142 740496957 740496586 5.980000e-84 322.0
22 TraesCS3D01G449900 chr3B 86.770 257 28 3 4387 4638 740095847 740095592 1.020000e-71 281.0
23 TraesCS3D01G449900 chr3B 84.980 253 32 3 4387 4634 740508128 740507877 7.960000e-63 252.0
24 TraesCS3D01G449900 chr3B 84.615 234 30 5 4406 4638 740054441 740054213 1.340000e-55 228.0
25 TraesCS3D01G449900 chr3B 96.212 132 5 0 1 132 740547724 740547593 2.900000e-52 217.0
26 TraesCS3D01G449900 chr3B 97.143 105 3 0 1653 1757 740545995 740545891 1.370000e-40 178.0
27 TraesCS3D01G449900 chr3B 80.226 177 25 8 220 390 763495664 763495492 1.810000e-24 124.0
28 TraesCS3D01G449900 chr3B 82.022 89 14 2 139 225 169707815 169707727 1.850000e-09 75.0
29 TraesCS3D01G449900 chr4D 88.578 429 34 13 2418 2842 433393652 433393235 1.540000e-139 507.0
30 TraesCS3D01G449900 chr6D 88.943 407 37 6 2418 2823 332499022 332499421 3.330000e-136 496.0
31 TraesCS3D01G449900 chr6D 87.356 435 34 14 2418 2831 82636263 82635829 3.350000e-131 479.0
32 TraesCS3D01G449900 chr6D 84.146 82 10 3 138 216 467149845 467149926 5.140000e-10 76.8
33 TraesCS3D01G449900 chr6A 87.907 430 40 8 2399 2823 471800530 471800952 3.330000e-136 496.0
34 TraesCS3D01G449900 chr6A 86.364 440 29 17 2418 2828 99424050 99424487 7.310000e-123 451.0
35 TraesCS3D01G449900 chr6A 79.872 313 57 5 224 532 143499009 143499319 1.740000e-54 224.0
36 TraesCS3D01G449900 chr6A 82.105 95 13 4 134 224 3551317 3551411 1.430000e-10 78.7
37 TraesCS3D01G449900 chr5D 89.000 400 35 7 2429 2828 442331810 442332200 2.000000e-133 486.0
38 TraesCS3D01G449900 chr5D 86.301 73 8 2 154 224 74453971 74454043 1.430000e-10 78.7
39 TraesCS3D01G449900 chr5B 88.350 412 37 9 2418 2828 538542406 538542807 7.210000e-133 484.0
40 TraesCS3D01G449900 chr6B 86.499 437 34 17 2418 2831 157664256 157663822 1.570000e-124 457.0
41 TraesCS3D01G449900 chr2B 84.819 415 52 9 2418 2828 208626805 208626398 1.610000e-109 407.0
42 TraesCS3D01G449900 chr2B 83.721 86 12 2 140 224 371505997 371505913 3.970000e-11 80.5
43 TraesCS3D01G449900 chr2A 84.819 415 52 9 2418 2828 152008515 152008922 1.610000e-109 407.0
44 TraesCS3D01G449900 chr2D 84.578 415 53 9 2418 2828 149683884 149683477 7.470000e-108 401.0
45 TraesCS3D01G449900 chr2D 79.672 305 52 7 226 520 28837345 28837041 1.350000e-50 211.0
46 TraesCS3D01G449900 chr2D 83.696 92 11 4 137 224 540002225 540002316 3.070000e-12 84.2
47 TraesCS3D01G449900 chr3A 83.776 339 33 10 4317 4638 693650168 693649835 7.790000e-78 302.0
48 TraesCS3D01G449900 chr3A 86.770 257 28 3 4387 4638 693616125 693615870 1.020000e-71 281.0
49 TraesCS3D01G449900 chr3A 80.597 201 31 8 249 446 108928431 108928626 1.070000e-31 148.0
50 TraesCS3D01G449900 chr3A 85.882 85 9 2 1859 1940 555745474 555745558 2.380000e-13 87.9
51 TraesCS3D01G449900 chr3A 85.882 85 9 2 1859 1940 555765380 555765464 2.380000e-13 87.9
52 TraesCS3D01G449900 chr3A 84.000 75 10 1 1862 1934 69117294 69117368 2.390000e-08 71.3
53 TraesCS3D01G449900 chr4A 82.418 91 13 3 138 225 598588955 598589045 5.140000e-10 76.8
54 TraesCS3D01G449900 chr4A 84.722 72 9 2 1865 1934 644632987 644632916 2.390000e-08 71.3
55 TraesCS3D01G449900 chr1D 84.146 82 10 2 1858 1936 491741834 491741753 5.140000e-10 76.8
56 TraesCS3D01G449900 chr7B 86.765 68 8 1 1866 1933 154726060 154726126 1.850000e-09 75.0
57 TraesCS3D01G449900 chr7D 92.683 41 1 2 4184 4223 75938556 75938517 1.860000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G449900 chr3D 557923151 557927941 4790 True 3001.800000 8848 96.226667 1 4791 3 chr3D.!!$R3 4790
1 TraesCS3D01G449900 chrUn 295853149 295856188 3039 True 1332.000000 3273 90.583000 1624 4791 3 chrUn.!!$R3 3167
2 TraesCS3D01G449900 chrUn 351522487 351523508 1021 True 584.000000 959 92.045000 1 1160 2 chrUn.!!$R4 1159
3 TraesCS3D01G449900 chr3B 740542875 740547724 4849 True 757.714286 2047 91.737000 1 4791 7 chr3B.!!$R8 4790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 394 0.036671 AACCTAAAGCCGTCTTCCCG 60.037 55.0 0.00 0.00 0.00 5.14 F
356 397 0.245539 CTAAAGCCGTCTTCCCGACA 59.754 55.0 0.00 0.00 42.98 4.35 F
363 404 0.388649 CGTCTTCCCGACAACCTCTG 60.389 60.0 0.00 0.00 42.98 3.35 F
1894 2025 0.381089 TGTTTTTAACGCCGGTGTGG 59.619 50.0 23.73 1.49 42.50 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 2008 0.381089 CACCACACCGGCGTTAAAAA 59.619 50.0 6.01 0.0 39.03 1.94 R
1885 2016 0.387565 ATTTTTGACACCACACCGGC 59.612 50.0 0.00 0.0 39.03 6.13 R
2347 2724 0.396695 AAGCCGGGGATCGACTTCTA 60.397 55.0 2.18 0.0 36.93 2.10 R
3809 4221 0.539901 TCTCTCCCGTATAGCCTGCC 60.540 60.0 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 123 3.443037 CAGCTCGAATAACACTCTCCAG 58.557 50.000 0.00 0.00 0.00 3.86
121 126 4.705507 AGCTCGAATAACACTCTCCAGTAA 59.294 41.667 0.00 0.00 0.00 2.24
123 128 5.288952 GCTCGAATAACACTCTCCAGTAAAC 59.711 44.000 0.00 0.00 0.00 2.01
132 137 7.534723 ACACTCTCCAGTAAACATTACACTA 57.465 36.000 3.37 0.00 0.00 2.74
134 139 9.251440 ACACTCTCCAGTAAACATTACACTATA 57.749 33.333 3.37 0.00 0.00 1.31
167 172 1.414158 GGAGGACCTCCGATGATTCA 58.586 55.000 24.98 0.00 41.08 2.57
168 173 1.974236 GGAGGACCTCCGATGATTCAT 59.026 52.381 24.98 0.00 41.08 2.57
169 174 2.028567 GGAGGACCTCCGATGATTCATC 60.029 54.545 24.98 15.38 41.08 2.92
170 175 2.896685 GAGGACCTCCGATGATTCATCT 59.103 50.000 21.23 5.27 38.59 2.90
171 176 3.312890 AGGACCTCCGATGATTCATCTT 58.687 45.455 21.23 3.89 38.59 2.40
172 177 3.713764 AGGACCTCCGATGATTCATCTTT 59.286 43.478 21.23 4.19 38.59 2.52
176 181 6.370166 GGACCTCCGATGATTCATCTTTAATC 59.630 42.308 21.23 13.78 38.59 1.75
177 182 6.830912 ACCTCCGATGATTCATCTTTAATCA 58.169 36.000 21.23 0.00 44.92 2.57
194 199 9.952030 TCTTTAATCATGGTAGTACAATGAACA 57.048 29.630 21.60 11.24 0.00 3.18
195 200 9.988350 CTTTAATCATGGTAGTACAATGAACAC 57.012 33.333 21.60 0.00 0.00 3.32
199 204 7.712204 TCATGGTAGTACAATGAACACTAGA 57.288 36.000 16.63 0.00 0.00 2.43
200 205 8.129496 TCATGGTAGTACAATGAACACTAGAA 57.871 34.615 16.63 0.00 0.00 2.10
201 206 8.590204 TCATGGTAGTACAATGAACACTAGAAA 58.410 33.333 16.63 0.00 0.00 2.52
214 219 9.979578 ATGAACACTAGAAATAACAAAATTGCA 57.020 25.926 0.00 0.00 0.00 4.08
261 302 2.068915 GGTTGAAACCCCCGGACTA 58.931 57.895 0.73 0.00 43.43 2.59
263 304 1.680860 GGTTGAAACCCCCGGACTATG 60.681 57.143 0.73 0.00 43.43 2.23
267 308 0.106719 AAACCCCCGGACTATGCATG 60.107 55.000 10.16 1.82 0.00 4.06
271 312 1.447317 CCCCGGACTATGCATGCAAC 61.447 60.000 26.68 15.59 0.00 4.17
272 313 1.643292 CCGGACTATGCATGCAACG 59.357 57.895 26.68 21.58 0.00 4.10
294 335 5.030295 CGATGCACACAACCATCTTTATTC 58.970 41.667 0.00 0.00 36.55 1.75
296 337 6.037062 CGATGCACACAACCATCTTTATTCTA 59.963 38.462 0.00 0.00 36.55 2.10
327 368 8.417106 TCAACAAAGCCAGACAAAACAAATATA 58.583 29.630 0.00 0.00 0.00 0.86
328 369 9.206870 CAACAAAGCCAGACAAAACAAATATAT 57.793 29.630 0.00 0.00 0.00 0.86
329 370 8.761575 ACAAAGCCAGACAAAACAAATATATG 57.238 30.769 0.00 0.00 0.00 1.78
330 371 7.818930 ACAAAGCCAGACAAAACAAATATATGG 59.181 33.333 0.00 0.00 0.00 2.74
331 372 7.716799 AAGCCAGACAAAACAAATATATGGA 57.283 32.000 0.00 0.00 0.00 3.41
332 373 7.902920 AGCCAGACAAAACAAATATATGGAT 57.097 32.000 0.00 0.00 0.00 3.41
334 375 7.560991 AGCCAGACAAAACAAATATATGGATCA 59.439 33.333 0.00 0.00 0.00 2.92
335 376 8.196771 GCCAGACAAAACAAATATATGGATCAA 58.803 33.333 0.00 0.00 0.00 2.57
336 377 9.520204 CCAGACAAAACAAATATATGGATCAAC 57.480 33.333 0.00 0.00 0.00 3.18
337 378 9.520204 CAGACAAAACAAATATATGGATCAACC 57.480 33.333 0.00 0.00 39.54 3.77
338 379 9.479549 AGACAAAACAAATATATGGATCAACCT 57.520 29.630 0.00 0.00 39.86 3.50
344 385 8.409358 ACAAATATATGGATCAACCTAAAGCC 57.591 34.615 0.00 0.00 39.86 4.35
345 386 7.174946 ACAAATATATGGATCAACCTAAAGCCG 59.825 37.037 0.00 0.00 39.86 5.52
346 387 4.706842 ATATGGATCAACCTAAAGCCGT 57.293 40.909 0.00 0.00 39.86 5.68
347 388 2.396590 TGGATCAACCTAAAGCCGTC 57.603 50.000 0.00 0.00 39.86 4.79
348 389 1.906574 TGGATCAACCTAAAGCCGTCT 59.093 47.619 0.00 0.00 39.86 4.18
349 390 2.304761 TGGATCAACCTAAAGCCGTCTT 59.695 45.455 0.00 0.00 39.86 3.01
350 391 2.937149 GGATCAACCTAAAGCCGTCTTC 59.063 50.000 0.00 0.00 35.41 2.87
351 392 2.467566 TCAACCTAAAGCCGTCTTCC 57.532 50.000 0.00 0.00 0.00 3.46
352 393 1.002773 TCAACCTAAAGCCGTCTTCCC 59.997 52.381 0.00 0.00 0.00 3.97
353 394 0.036671 AACCTAAAGCCGTCTTCCCG 60.037 55.000 0.00 0.00 0.00 5.14
354 395 0.901580 ACCTAAAGCCGTCTTCCCGA 60.902 55.000 0.00 0.00 0.00 5.14
355 396 0.459759 CCTAAAGCCGTCTTCCCGAC 60.460 60.000 0.00 0.00 39.33 4.79
356 397 0.245539 CTAAAGCCGTCTTCCCGACA 59.754 55.000 0.00 0.00 42.98 4.35
357 398 0.680618 TAAAGCCGTCTTCCCGACAA 59.319 50.000 0.00 0.00 42.98 3.18
358 399 0.883370 AAAGCCGTCTTCCCGACAAC 60.883 55.000 0.00 0.00 42.98 3.32
359 400 2.726822 AAGCCGTCTTCCCGACAACC 62.727 60.000 0.00 0.00 42.98 3.77
360 401 3.057337 CCGTCTTCCCGACAACCT 58.943 61.111 0.00 0.00 42.98 3.50
361 402 1.080025 CCGTCTTCCCGACAACCTC 60.080 63.158 0.00 0.00 42.98 3.85
362 403 1.533469 CCGTCTTCCCGACAACCTCT 61.533 60.000 0.00 0.00 42.98 3.69
363 404 0.388649 CGTCTTCCCGACAACCTCTG 60.389 60.000 0.00 0.00 42.98 3.35
364 405 0.680061 GTCTTCCCGACAACCTCTGT 59.320 55.000 0.00 0.00 42.37 3.41
377 418 1.271762 ACCTCTGTCGCTACACCTACA 60.272 52.381 0.00 0.00 0.00 2.74
410 452 2.029073 CTGACCTCGCACCAACGT 59.971 61.111 0.00 0.00 0.00 3.99
424 466 2.290008 ACCAACGTGCACCATCTAATCA 60.290 45.455 12.15 0.00 0.00 2.57
428 470 2.764010 ACGTGCACCATCTAATCAGGTA 59.236 45.455 12.15 0.00 33.49 3.08
445 488 3.106986 TAGCCTCATCAAGCCGCCC 62.107 63.158 0.00 0.00 0.00 6.13
447 490 2.045045 CCTCATCAAGCCGCCCAA 60.045 61.111 0.00 0.00 0.00 4.12
448 491 1.454479 CCTCATCAAGCCGCCCAAT 60.454 57.895 0.00 0.00 0.00 3.16
449 492 1.731433 CCTCATCAAGCCGCCCAATG 61.731 60.000 0.00 0.00 0.00 2.82
464 507 3.665675 AATGGCGAGTCGGGAGCAC 62.666 63.158 15.52 0.00 0.00 4.40
470 513 2.847234 AGTCGGGAGCACCAACCA 60.847 61.111 1.58 0.00 40.22 3.67
474 517 2.034221 GGGAGCACCAACCAGTCC 59.966 66.667 1.58 0.00 39.85 3.85
491 534 3.157932 GTCCAGCAGACTCTATCACAC 57.842 52.381 0.00 0.00 42.69 3.82
492 535 1.745653 TCCAGCAGACTCTATCACACG 59.254 52.381 0.00 0.00 0.00 4.49
500 544 0.528466 CTCTATCACACGCCGCATGT 60.528 55.000 0.00 0.00 0.00 3.21
508 552 4.208948 CGCCGCATGTACACGCTG 62.209 66.667 12.62 6.67 0.00 5.18
539 583 2.029073 CGCCATCTTCCGCCGTAT 59.971 61.111 0.00 0.00 0.00 3.06
544 591 0.874175 CATCTTCCGCCGTATTCGCA 60.874 55.000 0.00 0.00 35.54 5.10
556 603 4.863131 GCCGTATTCGCAGCTATATTACTT 59.137 41.667 0.00 0.00 35.54 2.24
557 604 5.220228 GCCGTATTCGCAGCTATATTACTTG 60.220 44.000 0.00 0.00 35.54 3.16
559 606 5.220228 CGTATTCGCAGCTATATTACTTGGC 60.220 44.000 0.00 0.00 0.00 4.52
560 607 4.336889 TTCGCAGCTATATTACTTGGCT 57.663 40.909 0.00 0.00 0.00 4.75
570 620 9.315363 AGCTATATTACTTGGCTTCTGTAGTAT 57.685 33.333 0.00 0.00 0.00 2.12
582 633 9.953565 TGGCTTCTGTAGTATTAACATTTACTT 57.046 29.630 0.00 0.00 31.37 2.24
605 656 7.653311 ACTTGATGCCATTAGAAAAGAACAAAC 59.347 33.333 0.00 0.00 0.00 2.93
634 686 8.843262 AGCTAACCCCATATTTTATAACGAAAC 58.157 33.333 0.00 0.00 0.00 2.78
639 691 7.835181 ACCCCATATTTTATAACGAAACCAAGA 59.165 33.333 0.00 0.00 0.00 3.02
690 742 4.991056 GTGTATCATATTCATGCGGAGTGT 59.009 41.667 0.00 0.00 31.73 3.55
853 906 2.890808 TCTCCACTGTCACTCACAAC 57.109 50.000 0.00 0.00 33.31 3.32
854 907 2.388735 TCTCCACTGTCACTCACAACT 58.611 47.619 0.00 0.00 33.31 3.16
855 908 2.766263 TCTCCACTGTCACTCACAACTT 59.234 45.455 0.00 0.00 33.31 2.66
970 1027 0.737715 GTCGATCTTGTGGCGCTTCT 60.738 55.000 7.64 0.00 0.00 2.85
1188 1263 2.960957 ATCTCCGGCTCGTGATTGCG 62.961 60.000 0.00 0.00 0.00 4.85
1244 1319 4.210120 CACAACGACCAAGAAGAAGAAGAG 59.790 45.833 0.00 0.00 0.00 2.85
1245 1320 4.099573 ACAACGACCAAGAAGAAGAAGAGA 59.900 41.667 0.00 0.00 0.00 3.10
1246 1321 5.221541 ACAACGACCAAGAAGAAGAAGAGAT 60.222 40.000 0.00 0.00 0.00 2.75
1293 1371 2.831366 GCATGCATGGAGGCGTCTG 61.831 63.158 27.34 0.13 36.28 3.51
1312 1390 6.404708 CGTCTGAATCCATCCTTCATATGAT 58.595 40.000 6.17 0.00 32.50 2.45
1338 1416 7.908827 TGATTTTTAATGAGCAATTGCATGT 57.091 28.000 30.89 11.91 45.16 3.21
1339 1417 7.744059 TGATTTTTAATGAGCAATTGCATGTG 58.256 30.769 30.89 0.00 45.16 3.21
1360 1438 5.036737 GTGTGATTTGGACTGTTTCAACTG 58.963 41.667 0.00 0.00 0.00 3.16
1365 1456 5.689383 TTTGGACTGTTTCAACTGCTATC 57.311 39.130 0.00 0.00 0.00 2.08
1369 1460 5.827797 TGGACTGTTTCAACTGCTATCTTTT 59.172 36.000 0.00 0.00 0.00 2.27
1392 1483 5.418310 TTCAAAGAGGTTTTTAGTCGCTG 57.582 39.130 0.00 0.00 0.00 5.18
1397 1488 5.864628 AGAGGTTTTTAGTCGCTGAATTC 57.135 39.130 0.00 0.00 0.00 2.17
1398 1489 4.695928 AGAGGTTTTTAGTCGCTGAATTCC 59.304 41.667 2.27 0.00 0.00 3.01
1431 1522 4.641396 CATGAACTCTGTGTTTCCTGGTA 58.359 43.478 0.00 0.00 39.30 3.25
1438 1529 6.017192 ACTCTGTGTTTCCTGGTAGATCTTA 58.983 40.000 0.00 0.00 0.00 2.10
1459 1551 8.861033 TCTTATGACTGCAATTATTGATTTGC 57.139 30.769 9.36 0.88 0.00 3.68
1461 1553 5.402997 TGACTGCAATTATTGATTTGCCA 57.597 34.783 9.36 0.00 0.00 4.92
1505 1597 4.101585 TGTTCATCAGTCAGTCCAAGTCTT 59.898 41.667 0.00 0.00 0.00 3.01
1550 1644 7.872993 ACGGGAATGACAAGACATATATTGTAG 59.127 37.037 0.00 0.00 40.34 2.74
1565 1659 9.579768 CATATATTGTAGTCCACTAGATTGCTC 57.420 37.037 0.00 0.00 0.00 4.26
1579 1673 6.874134 ACTAGATTGCTCGTAGATTTGTTTGT 59.126 34.615 0.00 0.00 33.89 2.83
1582 1676 8.268850 AGATTGCTCGTAGATTTGTTTGTAAT 57.731 30.769 0.00 0.00 33.89 1.89
1621 1716 8.915057 TGGCTATAGTGTAGTAGGTTTAGTAG 57.085 38.462 0.84 0.00 0.00 2.57
1648 1743 8.359060 AGTAGCAAGAGAAATCGCTTAATTAG 57.641 34.615 0.00 0.00 34.25 1.73
1863 1994 3.173953 TGCATTTGAACCCATCCTTCT 57.826 42.857 0.00 0.00 0.00 2.85
1864 1995 3.091545 TGCATTTGAACCCATCCTTCTC 58.908 45.455 0.00 0.00 0.00 2.87
1867 1998 4.889409 GCATTTGAACCCATCCTTCTCATA 59.111 41.667 0.00 0.00 0.00 2.15
1869 2000 6.041296 GCATTTGAACCCATCCTTCTCATAAT 59.959 38.462 0.00 0.00 0.00 1.28
1870 2001 7.231317 GCATTTGAACCCATCCTTCTCATAATA 59.769 37.037 0.00 0.00 0.00 0.98
1876 2007 9.442047 GAACCCATCCTTCTCATAATATAAGTG 57.558 37.037 0.00 0.00 0.00 3.16
1877 2008 8.511748 ACCCATCCTTCTCATAATATAAGTGT 57.488 34.615 0.00 0.00 0.00 3.55
1879 2010 9.799106 CCCATCCTTCTCATAATATAAGTGTTT 57.201 33.333 0.00 0.00 0.00 2.83
1888 2019 9.365311 CTCATAATATAAGTGTTTTTAACGCCG 57.635 33.333 0.00 0.00 42.76 6.46
1889 2020 8.336806 TCATAATATAAGTGTTTTTAACGCCGG 58.663 33.333 0.00 0.00 42.76 6.13
1890 2021 6.499234 AATATAAGTGTTTTTAACGCCGGT 57.501 33.333 1.90 0.00 42.76 5.28
1891 2022 2.478547 AAGTGTTTTTAACGCCGGTG 57.521 45.000 14.93 14.93 42.76 4.94
1892 2023 1.381522 AGTGTTTTTAACGCCGGTGT 58.618 45.000 16.69 16.69 42.76 4.16
1893 2024 1.064357 AGTGTTTTTAACGCCGGTGTG 59.936 47.619 23.73 5.03 42.76 3.82
1894 2025 0.381089 TGTTTTTAACGCCGGTGTGG 59.619 50.000 23.73 1.49 42.50 4.17
1895 2026 0.381445 GTTTTTAACGCCGGTGTGGT 59.619 50.000 23.73 9.78 41.21 4.16
1901 2032 2.897846 CGCCGGTGTGGTGTCAAA 60.898 61.111 6.91 0.00 43.63 2.69
1902 2033 2.473760 CGCCGGTGTGGTGTCAAAA 61.474 57.895 6.91 0.00 43.63 2.44
1903 2034 1.810532 GCCGGTGTGGTGTCAAAAA 59.189 52.632 1.90 0.00 41.21 1.94
1904 2035 0.387565 GCCGGTGTGGTGTCAAAAAT 59.612 50.000 1.90 0.00 41.21 1.82
1905 2036 1.867698 GCCGGTGTGGTGTCAAAAATG 60.868 52.381 1.90 0.00 41.21 2.32
1906 2037 1.407258 CCGGTGTGGTGTCAAAAATGT 59.593 47.619 0.00 0.00 0.00 2.71
1907 2038 2.159170 CCGGTGTGGTGTCAAAAATGTT 60.159 45.455 0.00 0.00 0.00 2.71
1908 2039 3.112580 CGGTGTGGTGTCAAAAATGTTC 58.887 45.455 0.00 0.00 0.00 3.18
1909 2040 3.181491 CGGTGTGGTGTCAAAAATGTTCT 60.181 43.478 0.00 0.00 0.00 3.01
1910 2041 4.676723 CGGTGTGGTGTCAAAAATGTTCTT 60.677 41.667 0.00 0.00 0.00 2.52
1911 2042 5.449314 CGGTGTGGTGTCAAAAATGTTCTTA 60.449 40.000 0.00 0.00 0.00 2.10
1912 2043 6.512297 GGTGTGGTGTCAAAAATGTTCTTAT 58.488 36.000 0.00 0.00 0.00 1.73
1913 2044 7.520776 CGGTGTGGTGTCAAAAATGTTCTTATA 60.521 37.037 0.00 0.00 0.00 0.98
1914 2045 8.303876 GGTGTGGTGTCAAAAATGTTCTTATAT 58.696 33.333 0.00 0.00 0.00 0.86
1915 2046 9.691362 GTGTGGTGTCAAAAATGTTCTTATATT 57.309 29.630 0.00 0.00 0.00 1.28
1941 2072 7.938140 TGAAACTGAGGGAGTATAATTTTGG 57.062 36.000 0.00 0.00 33.09 3.28
1942 2073 6.889722 TGAAACTGAGGGAGTATAATTTTGGG 59.110 38.462 0.00 0.00 33.09 4.12
1943 2074 5.388599 ACTGAGGGAGTATAATTTTGGGG 57.611 43.478 0.00 0.00 30.86 4.96
1944 2075 5.043762 ACTGAGGGAGTATAATTTTGGGGA 58.956 41.667 0.00 0.00 30.86 4.81
1945 2076 5.104067 ACTGAGGGAGTATAATTTTGGGGAC 60.104 44.000 0.00 0.00 30.86 4.46
1946 2077 4.791334 TGAGGGAGTATAATTTTGGGGACA 59.209 41.667 0.00 0.00 39.83 4.02
1947 2078 5.104109 TGAGGGAGTATAATTTTGGGGACAG 60.104 44.000 0.00 0.00 44.54 3.51
1948 2079 4.794067 AGGGAGTATAATTTTGGGGACAGT 59.206 41.667 0.00 0.00 44.54 3.55
1949 2080 5.255443 AGGGAGTATAATTTTGGGGACAGTT 59.745 40.000 0.00 0.00 44.54 3.16
1950 2081 5.359860 GGGAGTATAATTTTGGGGACAGTTG 59.640 44.000 0.00 0.00 44.54 3.16
1951 2082 5.949952 GGAGTATAATTTTGGGGACAGTTGT 59.050 40.000 0.00 0.00 44.54 3.32
1952 2083 7.114095 GGAGTATAATTTTGGGGACAGTTGTA 58.886 38.462 0.00 0.00 44.54 2.41
1953 2084 7.282450 GGAGTATAATTTTGGGGACAGTTGTAG 59.718 40.741 0.00 0.00 44.54 2.74
1954 2085 7.696017 AGTATAATTTTGGGGACAGTTGTAGT 58.304 34.615 0.00 0.00 44.54 2.73
1955 2086 8.828751 AGTATAATTTTGGGGACAGTTGTAGTA 58.171 33.333 0.00 0.00 44.54 1.82
1956 2087 9.106070 GTATAATTTTGGGGACAGTTGTAGTAG 57.894 37.037 0.00 0.00 44.54 2.57
1957 2088 5.578157 ATTTTGGGGACAGTTGTAGTAGT 57.422 39.130 0.00 0.00 44.54 2.73
1958 2089 6.691255 ATTTTGGGGACAGTTGTAGTAGTA 57.309 37.500 0.00 0.00 44.54 1.82
1959 2090 6.497624 TTTTGGGGACAGTTGTAGTAGTAA 57.502 37.500 0.00 0.00 44.54 2.24
1960 2091 6.691255 TTTGGGGACAGTTGTAGTAGTAAT 57.309 37.500 0.00 0.00 44.54 1.89
1961 2092 7.795534 TTTGGGGACAGTTGTAGTAGTAATA 57.204 36.000 0.00 0.00 44.54 0.98
1962 2093 6.780457 TGGGGACAGTTGTAGTAGTAATAC 57.220 41.667 0.76 0.76 35.01 1.89
1988 2119 7.466746 AGTATTTTGAAGTGTGGTATGCATT 57.533 32.000 3.54 0.00 0.00 3.56
2000 2131 3.030291 GGTATGCATTTGAACCCATCCA 58.970 45.455 3.54 0.00 0.00 3.41
2003 2134 1.750206 TGCATTTGAACCCATCCATCG 59.250 47.619 0.00 0.00 0.00 3.84
2015 2146 6.928348 ACCCATCCATCGTATGACTTATAA 57.072 37.500 0.00 0.00 0.00 0.98
2016 2332 7.496346 ACCCATCCATCGTATGACTTATAAT 57.504 36.000 0.00 0.00 0.00 1.28
2080 2405 4.482952 TTAGTTCCCGAATTCCTTCTCC 57.517 45.455 0.00 0.00 0.00 3.71
2262 2587 9.046296 CAACAATATACTCCACTAGATTGTTCC 57.954 37.037 10.36 0.00 42.53 3.62
2270 2595 8.152023 ACTCCACTAGATTGTTCCTAGATTTT 57.848 34.615 0.00 0.00 37.59 1.82
2279 2604 7.549488 AGATTGTTCCTAGATTTTCTTGTACGG 59.451 37.037 0.00 0.00 0.00 4.02
2281 2606 6.161381 TGTTCCTAGATTTTCTTGTACGGTC 58.839 40.000 0.00 0.00 0.00 4.79
2282 2607 6.014840 TGTTCCTAGATTTTCTTGTACGGTCT 60.015 38.462 0.00 0.00 0.00 3.85
2283 2608 7.177216 TGTTCCTAGATTTTCTTGTACGGTCTA 59.823 37.037 0.00 0.00 0.00 2.59
2284 2609 7.330900 TCCTAGATTTTCTTGTACGGTCTAG 57.669 40.000 0.00 0.00 35.59 2.43
2295 2672 5.068234 TGTACGGTCTAGAGAAATGGTTG 57.932 43.478 0.00 0.00 0.00 3.77
2337 2714 4.056050 GGCCTCGAAATTATCTAGCGAAA 58.944 43.478 0.00 0.00 0.00 3.46
2339 2716 5.433005 GCCTCGAAATTATCTAGCGAAAAC 58.567 41.667 0.00 0.00 0.00 2.43
2341 2718 5.753921 CCTCGAAATTATCTAGCGAAAACCT 59.246 40.000 0.00 0.00 0.00 3.50
2347 2724 9.315525 GAAATTATCTAGCGAAAACCTCTTAGT 57.684 33.333 0.00 0.00 0.00 2.24
2349 2726 9.968870 AATTATCTAGCGAAAACCTCTTAGTAG 57.031 33.333 0.00 0.00 0.00 2.57
2350 2727 8.743085 TTATCTAGCGAAAACCTCTTAGTAGA 57.257 34.615 0.00 0.00 0.00 2.59
2351 2728 7.642082 ATCTAGCGAAAACCTCTTAGTAGAA 57.358 36.000 0.00 0.00 0.00 2.10
2352 2729 7.086230 TCTAGCGAAAACCTCTTAGTAGAAG 57.914 40.000 0.00 0.00 0.00 2.85
2354 2731 5.712004 AGCGAAAACCTCTTAGTAGAAGTC 58.288 41.667 0.00 0.00 0.00 3.01
2355 2732 4.558080 GCGAAAACCTCTTAGTAGAAGTCG 59.442 45.833 0.00 0.00 0.00 4.18
2356 2733 5.618640 GCGAAAACCTCTTAGTAGAAGTCGA 60.619 44.000 0.00 0.00 0.00 4.20
2358 2735 6.687958 CGAAAACCTCTTAGTAGAAGTCGATC 59.312 42.308 0.00 0.00 0.00 3.69
2359 2736 6.453926 AAACCTCTTAGTAGAAGTCGATCC 57.546 41.667 0.00 0.00 0.00 3.36
2360 2737 4.463070 ACCTCTTAGTAGAAGTCGATCCC 58.537 47.826 0.00 0.00 0.00 3.85
2381 2772 2.167662 CGGCTTTGATTTTGGGGTAGT 58.832 47.619 0.00 0.00 0.00 2.73
2387 2779 6.593770 GGCTTTGATTTTGGGGTAGTATTTTG 59.406 38.462 0.00 0.00 0.00 2.44
2511 2904 3.058160 CACAAGGGCTTCCAGCGG 61.058 66.667 0.00 0.00 43.62 5.52
2831 3224 2.060980 CCCTCTTCTCCAGGTCCGG 61.061 68.421 0.00 0.00 0.00 5.14
2837 3230 4.452733 CTCCAGGTCCGGCCGTTC 62.453 72.222 26.12 16.10 43.70 3.95
2883 3286 1.887242 GTTGCATGCTCCGGCGATA 60.887 57.895 20.33 0.00 42.25 2.92
2896 3299 3.108881 CCGGCGATATATCATCGAACTG 58.891 50.000 19.81 5.83 43.59 3.16
2897 3300 3.181500 CCGGCGATATATCATCGAACTGA 60.181 47.826 19.81 0.00 43.59 3.41
2898 3301 4.412207 CGGCGATATATCATCGAACTGAA 58.588 43.478 13.11 0.00 43.59 3.02
2900 3303 5.516696 CGGCGATATATCATCGAACTGAATT 59.483 40.000 13.11 0.00 43.59 2.17
2901 3304 6.035005 CGGCGATATATCATCGAACTGAATTT 59.965 38.462 13.11 0.00 43.59 1.82
2902 3305 7.176075 GGCGATATATCATCGAACTGAATTTG 58.824 38.462 13.11 0.00 43.59 2.32
2903 3306 7.063426 GGCGATATATCATCGAACTGAATTTGA 59.937 37.037 13.11 0.00 43.59 2.69
2904 3307 8.435430 GCGATATATCATCGAACTGAATTTGAA 58.565 33.333 13.11 0.00 43.59 2.69
2920 3323 9.446927 CTGAATTTGAATTTGTATTTTTACGCG 57.553 29.630 3.53 3.53 0.00 6.01
2921 3324 7.947299 TGAATTTGAATTTGTATTTTTACGCGC 59.053 29.630 5.73 0.00 0.00 6.86
2922 3325 5.408964 TTGAATTTGTATTTTTACGCGCG 57.591 34.783 30.96 30.96 0.00 6.86
2923 3326 4.465016 TGAATTTGTATTTTTACGCGCGT 58.535 34.783 39.05 39.05 0.00 6.01
2924 3327 4.318593 TGAATTTGTATTTTTACGCGCGTG 59.681 37.500 42.78 19.78 0.00 5.34
2925 3328 1.593426 TTGTATTTTTACGCGCGTGC 58.407 45.000 42.78 20.58 37.91 5.34
2947 3350 1.674057 CAGGAGGGACAGCTTCGTT 59.326 57.895 0.00 0.00 0.00 3.85
3065 3471 4.626081 AGCACGCTCACCACCACC 62.626 66.667 0.00 0.00 0.00 4.61
3066 3472 4.927782 GCACGCTCACCACCACCA 62.928 66.667 0.00 0.00 0.00 4.17
3067 3473 2.972505 CACGCTCACCACCACCAC 60.973 66.667 0.00 0.00 0.00 4.16
3489 3895 0.179134 CTCGACCGCTTCCCTTGTAG 60.179 60.000 0.00 0.00 0.00 2.74
3515 3924 2.183300 CGTTCGGGCCGATGAGAA 59.817 61.111 31.59 11.97 35.23 2.87
3518 3927 3.026431 TTCGGGCCGATGAGAACCC 62.026 63.158 31.59 0.00 35.23 4.11
3524 3933 2.511600 CGATGAGAACCCACGGCC 60.512 66.667 0.00 0.00 0.00 6.13
3591 4000 1.303888 AGCTCTACAACGACGGGGA 60.304 57.895 0.00 0.00 0.00 4.81
3621 4033 3.368571 GAGGAACGTCGGACCCGT 61.369 66.667 8.42 0.00 40.92 5.28
3831 4243 0.763652 AGGCTATACGGGAGAGACGA 59.236 55.000 0.00 0.00 34.93 4.20
3852 4264 4.724807 CGACGTCTCTTTCTAATTCGAGAC 59.275 45.833 14.70 7.92 45.43 3.36
3879 4291 6.146184 CGAGACTTCATCACAATTGTGTACTT 59.854 38.462 31.99 16.34 45.76 2.24
3880 4292 7.307396 CGAGACTTCATCACAATTGTGTACTTT 60.307 37.037 31.99 16.70 45.76 2.66
3881 4293 8.225603 AGACTTCATCACAATTGTGTACTTTT 57.774 30.769 31.99 17.14 45.76 2.27
3952 4364 0.758734 TGAGCCTGTGCAAGTACAGT 59.241 50.000 15.44 0.12 45.12 3.55
3956 4368 2.069273 GCCTGTGCAAGTACAGTACAG 58.931 52.381 21.38 21.38 45.12 2.74
3960 4372 2.069273 GTGCAAGTACAGTACAGCCAG 58.931 52.381 19.63 5.14 33.02 4.85
3975 4387 1.095600 GCCAGGTAGCAAAGCCTTAC 58.904 55.000 0.00 0.00 31.73 2.34
3977 4389 2.359900 CCAGGTAGCAAAGCCTTACTG 58.640 52.381 0.00 0.00 31.73 2.74
3980 4392 4.265073 CAGGTAGCAAAGCCTTACTGAAT 58.735 43.478 0.00 0.00 31.73 2.57
3981 4393 4.333926 CAGGTAGCAAAGCCTTACTGAATC 59.666 45.833 0.00 0.00 31.73 2.52
3994 4406 2.498167 ACTGAATCAGTCAACCAGCAC 58.502 47.619 10.56 0.00 41.21 4.40
3995 4407 2.158769 ACTGAATCAGTCAACCAGCACA 60.159 45.455 10.56 0.00 41.21 4.57
3996 4408 3.079578 CTGAATCAGTCAACCAGCACAT 58.920 45.455 1.31 0.00 35.22 3.21
3998 4410 2.574006 ATCAGTCAACCAGCACATGT 57.426 45.000 0.00 0.00 0.00 3.21
3999 4411 3.701205 ATCAGTCAACCAGCACATGTA 57.299 42.857 0.00 0.00 0.00 2.29
4001 4413 1.806542 CAGTCAACCAGCACATGTACC 59.193 52.381 0.00 0.00 0.00 3.34
4002 4414 1.419762 AGTCAACCAGCACATGTACCA 59.580 47.619 0.00 0.00 0.00 3.25
4003 4415 2.040278 AGTCAACCAGCACATGTACCAT 59.960 45.455 0.00 0.00 0.00 3.55
4004 4416 2.162208 GTCAACCAGCACATGTACCATG 59.838 50.000 0.00 2.77 0.00 3.66
4005 4417 2.161855 CAACCAGCACATGTACCATGT 58.838 47.619 0.00 4.08 0.00 3.21
4006 4418 2.557924 CAACCAGCACATGTACCATGTT 59.442 45.455 7.11 0.00 0.00 2.71
4008 4420 4.235079 ACCAGCACATGTACCATGTTAT 57.765 40.909 7.11 0.00 0.00 1.89
4009 4421 3.947196 ACCAGCACATGTACCATGTTATG 59.053 43.478 7.11 8.74 0.00 1.90
4010 4422 3.947196 CCAGCACATGTACCATGTTATGT 59.053 43.478 7.11 0.00 34.31 2.29
4011 4423 5.122519 CCAGCACATGTACCATGTTATGTA 58.877 41.667 7.11 0.00 32.86 2.29
4012 4424 5.237127 CCAGCACATGTACCATGTTATGTAG 59.763 44.000 7.11 0.00 32.86 2.74
4013 4425 5.817296 CAGCACATGTACCATGTTATGTAGT 59.183 40.000 7.11 0.00 32.86 2.73
4014 4426 6.983890 CAGCACATGTACCATGTTATGTAGTA 59.016 38.462 7.11 0.00 32.86 1.82
4015 4427 7.169813 CAGCACATGTACCATGTTATGTAGTAG 59.830 40.741 7.11 0.00 32.86 2.57
4016 4428 7.069455 AGCACATGTACCATGTTATGTAGTAGA 59.931 37.037 7.11 0.00 32.86 2.59
4017 4429 7.709182 GCACATGTACCATGTTATGTAGTAGAA 59.291 37.037 7.11 0.00 32.86 2.10
4018 4430 9.764363 CACATGTACCATGTTATGTAGTAGAAT 57.236 33.333 7.11 0.00 32.86 2.40
4033 4445 8.961294 TGTAGTAGAATTGTAGAGTAGAGACC 57.039 38.462 0.00 0.00 0.00 3.85
4045 4457 2.683867 AGTAGAGACCCTCGATTCAACG 59.316 50.000 0.00 0.00 35.36 4.10
4046 4458 0.818296 AGAGACCCTCGATTCAACGG 59.182 55.000 0.00 0.00 35.36 4.44
4053 4465 2.415512 CCCTCGATTCAACGGAACTTTC 59.584 50.000 0.00 0.00 35.46 2.62
4054 4466 3.064207 CCTCGATTCAACGGAACTTTCA 58.936 45.455 0.00 0.00 35.46 2.69
4057 4469 5.334879 CCTCGATTCAACGGAACTTTCATTT 60.335 40.000 0.00 0.00 35.46 2.32
4092 4504 0.467384 ATGGCTGCGCATCTCTAACT 59.533 50.000 12.24 0.00 0.00 2.24
4105 4517 6.273825 GCATCTCTAACTGAAACCGATTCTA 58.726 40.000 3.19 0.00 38.92 2.10
4109 4521 7.837863 TCTCTAACTGAAACCGATTCTACAAT 58.162 34.615 3.19 0.00 38.92 2.71
4300 4714 4.076394 ACAACAACAGTAACAACACAGGT 58.924 39.130 0.00 0.00 0.00 4.00
4301 4715 5.247084 ACAACAACAGTAACAACACAGGTA 58.753 37.500 0.00 0.00 0.00 3.08
4302 4716 5.122711 ACAACAACAGTAACAACACAGGTAC 59.877 40.000 0.00 0.00 0.00 3.34
4303 4717 5.093849 ACAACAGTAACAACACAGGTACT 57.906 39.130 0.00 0.00 43.88 2.73
4304 4718 5.114081 ACAACAGTAACAACACAGGTACTC 58.886 41.667 0.00 0.00 34.60 2.59
4387 4808 4.913345 GGTTTTAAATGAACACGGCTACAC 59.087 41.667 0.00 0.00 0.00 2.90
4399 4820 0.323360 GGCTACACTGGGGAAATGCA 60.323 55.000 0.00 0.00 0.00 3.96
4457 4878 4.104383 ACTCATCCAAAAGCTTTCCTCA 57.896 40.909 13.10 0.00 0.00 3.86
4476 4904 3.797039 TCATATCCTTCTTCAAGTGGCG 58.203 45.455 0.00 0.00 0.00 5.69
4491 4919 3.479269 GCGTCGCTGTTTCGGAGG 61.479 66.667 10.68 0.00 0.00 4.30
4551 4981 4.102524 TCAGGATATATTCGGTTTGCCACT 59.897 41.667 0.00 0.00 34.09 4.00
4586 5016 5.894298 ATATCAGATGGGCTAACAAGACA 57.106 39.130 0.00 0.00 0.00 3.41
4641 5071 6.862209 TGGTGCGCTTAGAAAATAAAATGAT 58.138 32.000 9.73 0.00 0.00 2.45
4642 5072 7.319646 TGGTGCGCTTAGAAAATAAAATGATT 58.680 30.769 9.73 0.00 0.00 2.57
4699 5130 1.204941 GAAAGCTAGAGAGAACCGGCA 59.795 52.381 0.00 0.00 0.00 5.69
4736 5168 5.597806 TGTGTTCGAGATATACAATCCACC 58.402 41.667 0.00 0.00 0.00 4.61
4738 5170 5.462398 GTGTTCGAGATATACAATCCACCAC 59.538 44.000 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 153 1.414158 TGAATCATCGGAGGTCCTCC 58.586 55.000 26.32 26.32 46.44 4.30
149 154 2.896685 AGATGAATCATCGGAGGTCCTC 59.103 50.000 16.57 10.78 44.67 3.71
150 155 2.969628 AGATGAATCATCGGAGGTCCT 58.030 47.619 16.57 0.00 44.67 3.85
151 156 3.760580 AAGATGAATCATCGGAGGTCC 57.239 47.619 16.57 0.00 44.67 4.46
152 157 6.931281 TGATTAAAGATGAATCATCGGAGGTC 59.069 38.462 16.57 13.44 44.67 3.85
153 158 6.830912 TGATTAAAGATGAATCATCGGAGGT 58.169 36.000 16.57 5.57 44.67 3.85
155 160 7.389884 ACCATGATTAAAGATGAATCATCGGAG 59.610 37.037 16.57 10.43 46.35 4.63
156 161 7.226441 ACCATGATTAAAGATGAATCATCGGA 58.774 34.615 16.57 4.42 46.35 4.55
157 162 7.444629 ACCATGATTAAAGATGAATCATCGG 57.555 36.000 16.57 11.00 46.35 4.18
158 163 9.212641 ACTACCATGATTAAAGATGAATCATCG 57.787 33.333 16.57 5.04 46.35 3.84
168 173 9.952030 TGTTCATTGTACTACCATGATTAAAGA 57.048 29.630 4.27 0.00 0.00 2.52
169 174 9.988350 GTGTTCATTGTACTACCATGATTAAAG 57.012 33.333 4.27 0.00 0.00 1.85
170 175 9.733556 AGTGTTCATTGTACTACCATGATTAAA 57.266 29.630 4.27 0.00 0.00 1.52
176 181 8.771920 TTTCTAGTGTTCATTGTACTACCATG 57.228 34.615 0.00 0.00 0.00 3.66
204 209 9.723601 AAAAACTGGATATGTATGCAATTTTGT 57.276 25.926 12.24 1.77 40.67 2.83
271 312 2.995466 AAAGATGGTTGTGTGCATCG 57.005 45.000 0.00 0.00 0.00 3.84
272 313 6.199937 AGAATAAAGATGGTTGTGTGCATC 57.800 37.500 0.00 0.00 0.00 3.91
294 335 8.915654 GTTTTGTCTGGCTTTGTTGAATAATAG 58.084 33.333 0.00 0.00 0.00 1.73
296 337 7.271511 TGTTTTGTCTGGCTTTGTTGAATAAT 58.728 30.769 0.00 0.00 0.00 1.28
309 350 7.715657 TGATCCATATATTTGTTTTGTCTGGC 58.284 34.615 0.00 0.00 0.00 4.85
327 368 2.505819 AGACGGCTTTAGGTTGATCCAT 59.494 45.455 0.00 0.00 39.02 3.41
328 369 1.906574 AGACGGCTTTAGGTTGATCCA 59.093 47.619 0.00 0.00 39.02 3.41
329 370 2.693267 AGACGGCTTTAGGTTGATCC 57.307 50.000 0.00 0.00 0.00 3.36
330 371 2.937149 GGAAGACGGCTTTAGGTTGATC 59.063 50.000 4.21 0.00 33.61 2.92
331 372 2.355818 GGGAAGACGGCTTTAGGTTGAT 60.356 50.000 4.21 0.00 33.61 2.57
332 373 1.002773 GGGAAGACGGCTTTAGGTTGA 59.997 52.381 4.21 0.00 33.61 3.18
334 375 0.036671 CGGGAAGACGGCTTTAGGTT 60.037 55.000 4.21 0.00 33.61 3.50
335 376 0.901580 TCGGGAAGACGGCTTTAGGT 60.902 55.000 4.21 0.00 33.61 3.08
336 377 0.459759 GTCGGGAAGACGGCTTTAGG 60.460 60.000 4.21 0.00 40.43 2.69
337 378 3.046280 GTCGGGAAGACGGCTTTAG 57.954 57.895 4.21 0.00 40.43 1.85
345 386 1.336980 GACAGAGGTTGTCGGGAAGAC 60.337 57.143 0.00 0.00 46.13 3.01
346 387 0.966920 GACAGAGGTTGTCGGGAAGA 59.033 55.000 0.00 0.00 46.13 2.87
347 388 3.516578 GACAGAGGTTGTCGGGAAG 57.483 57.895 0.00 0.00 46.13 3.46
354 395 0.317479 GGTGTAGCGACAGAGGTTGT 59.683 55.000 0.00 0.00 44.55 3.32
355 396 0.603569 AGGTGTAGCGACAGAGGTTG 59.396 55.000 0.00 0.00 35.82 3.77
356 397 1.817447 GTAGGTGTAGCGACAGAGGTT 59.183 52.381 0.00 0.00 35.82 3.50
357 398 1.271762 TGTAGGTGTAGCGACAGAGGT 60.272 52.381 0.00 0.00 35.82 3.85
358 399 1.460504 TGTAGGTGTAGCGACAGAGG 58.539 55.000 0.00 0.00 35.82 3.69
359 400 2.732597 GCTTGTAGGTGTAGCGACAGAG 60.733 54.545 0.00 0.00 35.82 3.35
360 401 1.201647 GCTTGTAGGTGTAGCGACAGA 59.798 52.381 0.00 0.00 35.82 3.41
361 402 1.202582 AGCTTGTAGGTGTAGCGACAG 59.797 52.381 0.00 0.00 39.82 3.51
362 403 1.254026 AGCTTGTAGGTGTAGCGACA 58.746 50.000 0.00 0.00 39.82 4.35
363 404 1.993370 CAAGCTTGTAGGTGTAGCGAC 59.007 52.381 18.65 0.00 39.82 5.19
364 405 1.890489 TCAAGCTTGTAGGTGTAGCGA 59.110 47.619 25.19 0.00 39.82 4.93
365 406 2.363788 TCAAGCTTGTAGGTGTAGCG 57.636 50.000 25.19 0.00 39.82 4.26
366 407 3.861840 TCATCAAGCTTGTAGGTGTAGC 58.138 45.455 25.19 0.00 35.16 3.58
377 418 2.356535 GGTCAGGGACATCATCAAGCTT 60.357 50.000 0.00 0.00 33.68 3.74
410 452 2.104792 GGCTACCTGATTAGATGGTGCA 59.895 50.000 0.00 0.00 35.48 4.57
445 488 2.892425 GCTCCCGACTCGCCATTG 60.892 66.667 0.00 0.00 0.00 2.82
447 490 4.148825 GTGCTCCCGACTCGCCAT 62.149 66.667 0.00 0.00 0.00 4.40
458 501 1.302832 CTGGACTGGTTGGTGCTCC 60.303 63.158 0.00 0.00 0.00 4.70
464 507 4.386413 GTCTGCTGGACTGGTTGG 57.614 61.111 3.73 0.00 41.46 3.77
474 517 1.554392 GCGTGTGATAGAGTCTGCTG 58.446 55.000 1.86 0.00 0.00 4.41
485 528 1.079474 TGTACATGCGGCGTGTGAT 60.079 52.632 32.16 12.73 35.12 3.06
487 530 2.474266 GTGTACATGCGGCGTGTG 59.526 61.111 32.16 16.37 35.12 3.82
488 531 3.109547 CGTGTACATGCGGCGTGT 61.110 61.111 28.63 28.63 37.38 4.49
489 532 4.499023 GCGTGTACATGCGGCGTG 62.499 66.667 23.44 20.10 33.23 5.34
500 544 2.477357 GCGACAGATTCTACAGCGTGTA 60.477 50.000 0.00 0.00 0.00 2.90
508 552 0.249489 ATGGCGGCGACAGATTCTAC 60.249 55.000 24.18 0.00 0.00 2.59
539 583 4.336889 AGCCAAGTAATATAGCTGCGAA 57.663 40.909 0.00 0.00 31.23 4.70
544 591 7.604657 ACTACAGAAGCCAAGTAATATAGCT 57.395 36.000 0.00 0.00 34.64 3.32
556 603 9.953565 AAGTAAATGTTAATACTACAGAAGCCA 57.046 29.630 0.00 0.00 32.24 4.75
573 623 9.023962 TCTTTTCTAATGGCATCAAGTAAATGT 57.976 29.630 0.00 0.00 0.00 2.71
582 633 6.148948 CGTTTGTTCTTTTCTAATGGCATCA 58.851 36.000 0.00 0.00 0.00 3.07
593 644 4.534168 GGTTAGCTCCGTTTGTTCTTTTC 58.466 43.478 0.00 0.00 0.00 2.29
605 656 6.091713 CGTTATAAAATATGGGGTTAGCTCCG 59.908 42.308 0.00 0.00 38.38 4.63
634 686 7.277098 CCTTCTCATGCATTTTGTAATTCTTGG 59.723 37.037 0.00 0.00 0.00 3.61
639 691 7.230849 TGTCCTTCTCATGCATTTTGTAATT 57.769 32.000 0.00 0.00 0.00 1.40
690 742 5.301805 TCAGTGATGACTTGAGTTGAGTGTA 59.698 40.000 0.00 0.00 0.00 2.90
853 906 1.670811 ACCGCTTGTGACTTGTGAAAG 59.329 47.619 0.00 0.00 0.00 2.62
854 907 1.745232 ACCGCTTGTGACTTGTGAAA 58.255 45.000 0.00 0.00 0.00 2.69
855 908 1.745232 AACCGCTTGTGACTTGTGAA 58.255 45.000 0.00 0.00 0.00 3.18
970 1027 0.107831 ACACTTACCGGCAAGCTCAA 59.892 50.000 14.63 0.00 0.00 3.02
980 1037 2.094659 CGCCAGAGCACACTTACCG 61.095 63.158 0.00 0.00 39.83 4.02
1221 1296 4.119862 TCTTCTTCTTCTTGGTCGTTGTG 58.880 43.478 0.00 0.00 0.00 3.33
1222 1297 4.099573 TCTCTTCTTCTTCTTGGTCGTTGT 59.900 41.667 0.00 0.00 0.00 3.32
1223 1298 4.621991 TCTCTTCTTCTTCTTGGTCGTTG 58.378 43.478 0.00 0.00 0.00 4.10
1224 1299 4.939052 TCTCTTCTTCTTCTTGGTCGTT 57.061 40.909 0.00 0.00 0.00 3.85
1225 1300 4.815269 CATCTCTTCTTCTTCTTGGTCGT 58.185 43.478 0.00 0.00 0.00 4.34
1244 1319 2.506472 GAGTCCCGGGAAGGCATC 59.494 66.667 28.84 12.20 39.21 3.91
1245 1320 3.090532 GGAGTCCCGGGAAGGCAT 61.091 66.667 28.84 9.12 39.21 4.40
1246 1321 4.649705 TGGAGTCCCGGGAAGGCA 62.650 66.667 28.84 0.00 39.21 4.75
1289 1367 8.512956 CAAATCATATGAAGGATGGATTCAGAC 58.487 37.037 9.99 0.00 39.86 3.51
1312 1390 8.784994 ACATGCAATTGCTCATTAAAAATCAAA 58.215 25.926 29.37 5.24 42.66 2.69
1322 1400 3.945981 TCACACATGCAATTGCTCATT 57.054 38.095 29.37 10.45 42.66 2.57
1338 1416 4.439974 GCAGTTGAAACAGTCCAAATCACA 60.440 41.667 0.00 0.00 0.00 3.58
1339 1417 4.044426 GCAGTTGAAACAGTCCAAATCAC 58.956 43.478 0.00 0.00 0.00 3.06
1369 1460 5.587043 TCAGCGACTAAAAACCTCTTTGAAA 59.413 36.000 0.00 0.00 0.00 2.69
1373 1464 6.294010 GGAATTCAGCGACTAAAAACCTCTTT 60.294 38.462 7.93 0.00 0.00 2.52
1374 1465 5.181433 GGAATTCAGCGACTAAAAACCTCTT 59.819 40.000 7.93 0.00 0.00 2.85
1375 1466 4.695928 GGAATTCAGCGACTAAAAACCTCT 59.304 41.667 7.93 0.00 0.00 3.69
1378 1469 3.187842 ACGGAATTCAGCGACTAAAAACC 59.812 43.478 7.93 0.00 0.00 3.27
1379 1470 4.151867 AGACGGAATTCAGCGACTAAAAAC 59.848 41.667 7.93 0.00 0.00 2.43
1380 1471 4.312443 AGACGGAATTCAGCGACTAAAAA 58.688 39.130 7.93 0.00 0.00 1.94
1388 1479 2.726066 GCAAAAGAGACGGAATTCAGCG 60.726 50.000 7.93 5.18 0.00 5.18
1392 1483 4.685169 TCATGCAAAAGAGACGGAATTC 57.315 40.909 0.00 0.00 0.00 2.17
1397 1488 3.070018 AGAGTTCATGCAAAAGAGACGG 58.930 45.455 0.00 0.00 0.00 4.79
1398 1489 3.496130 ACAGAGTTCATGCAAAAGAGACG 59.504 43.478 0.00 0.00 0.00 4.18
1459 1551 3.612479 GCAACTGCCACTATTGACTTTGG 60.612 47.826 0.00 0.00 34.31 3.28
1461 1553 3.254166 CAGCAACTGCCACTATTGACTTT 59.746 43.478 0.00 0.00 43.38 2.66
1505 1597 3.005472 CCGTCCTAGTTTTCAGTGTCAGA 59.995 47.826 0.00 0.00 0.00 3.27
1550 1644 4.839668 ATCTACGAGCAATCTAGTGGAC 57.160 45.455 0.00 0.00 38.00 4.02
1579 1673 9.090103 ACTATAGCCAACTCACTAAGCATATTA 57.910 33.333 0.00 0.00 0.00 0.98
1582 1676 6.323996 ACACTATAGCCAACTCACTAAGCATA 59.676 38.462 0.00 0.00 0.00 3.14
1621 1716 7.701809 ATTAAGCGATTTCTCTTGCTACTAC 57.298 36.000 0.00 0.00 36.49 2.73
1627 1722 9.163903 GAAATCTAATTAAGCGATTTCTCTTGC 57.836 33.333 20.71 5.14 44.62 4.01
1648 1743 9.620259 AATTTCAGGGTCACTATCTAAGAAATC 57.380 33.333 0.00 0.00 33.52 2.17
1664 1759 9.628500 GAGGTTTTCAGTATATAATTTCAGGGT 57.372 33.333 0.00 0.00 0.00 4.34
1665 1760 9.067986 GGAGGTTTTCAGTATATAATTTCAGGG 57.932 37.037 0.00 0.00 0.00 4.45
1693 1823 2.242708 AGTCAGGGGATCGACTTCTAGT 59.757 50.000 0.00 0.00 39.45 2.57
1863 1994 8.336806 CCGGCGTTAAAAACACTTATATTATGA 58.663 33.333 6.01 0.00 0.00 2.15
1864 1995 8.124199 ACCGGCGTTAAAAACACTTATATTATG 58.876 33.333 6.01 0.00 0.00 1.90
1867 1998 6.072563 ACACCGGCGTTAAAAACACTTATATT 60.073 34.615 6.01 0.00 0.00 1.28
1869 2000 4.754114 ACACCGGCGTTAAAAACACTTATA 59.246 37.500 6.01 0.00 0.00 0.98
1870 2001 3.565063 ACACCGGCGTTAAAAACACTTAT 59.435 39.130 6.01 0.00 0.00 1.73
1872 2003 1.744522 ACACCGGCGTTAAAAACACTT 59.255 42.857 6.01 0.00 0.00 3.16
1873 2004 1.064357 CACACCGGCGTTAAAAACACT 59.936 47.619 6.01 0.00 0.00 3.55
1874 2005 1.468895 CACACCGGCGTTAAAAACAC 58.531 50.000 6.01 0.00 0.00 3.32
1876 2007 0.381445 ACCACACCGGCGTTAAAAAC 59.619 50.000 6.01 0.00 39.03 2.43
1877 2008 0.381089 CACCACACCGGCGTTAAAAA 59.619 50.000 6.01 0.00 39.03 1.94
1879 2010 1.153208 ACACCACACCGGCGTTAAA 60.153 52.632 6.01 0.00 39.03 1.52
1881 2012 2.029369 GACACCACACCGGCGTTA 59.971 61.111 6.01 0.00 39.03 3.18
1882 2013 3.683966 TTGACACCACACCGGCGTT 62.684 57.895 6.01 0.00 39.03 4.84
1883 2014 3.683966 TTTGACACCACACCGGCGT 62.684 57.895 6.01 0.00 39.03 5.68
1885 2016 0.387565 ATTTTTGACACCACACCGGC 59.612 50.000 0.00 0.00 39.03 6.13
1886 2017 1.407258 ACATTTTTGACACCACACCGG 59.593 47.619 0.00 0.00 42.50 5.28
1887 2018 2.861462 ACATTTTTGACACCACACCG 57.139 45.000 0.00 0.00 0.00 4.94
1888 2019 4.385358 AGAACATTTTTGACACCACACC 57.615 40.909 0.00 0.00 0.00 4.16
1889 2020 9.691362 AATATAAGAACATTTTTGACACCACAC 57.309 29.630 0.00 0.00 0.00 3.82
1915 2046 9.627123 CCAAAATTATACTCCCTCAGTTTCATA 57.373 33.333 0.00 0.00 36.43 2.15
1916 2047 7.561356 CCCAAAATTATACTCCCTCAGTTTCAT 59.439 37.037 0.00 0.00 36.43 2.57
1917 2048 6.889722 CCCAAAATTATACTCCCTCAGTTTCA 59.110 38.462 0.00 0.00 36.43 2.69
1918 2049 6.321435 CCCCAAAATTATACTCCCTCAGTTTC 59.679 42.308 0.00 0.00 36.43 2.78
1919 2050 6.011096 TCCCCAAAATTATACTCCCTCAGTTT 60.011 38.462 0.00 0.00 36.43 2.66
1920 2051 5.494706 TCCCCAAAATTATACTCCCTCAGTT 59.505 40.000 0.00 0.00 36.43 3.16
1921 2052 5.043762 TCCCCAAAATTATACTCCCTCAGT 58.956 41.667 0.00 0.00 39.41 3.41
1922 2053 5.104109 TGTCCCCAAAATTATACTCCCTCAG 60.104 44.000 0.00 0.00 0.00 3.35
1923 2054 4.791334 TGTCCCCAAAATTATACTCCCTCA 59.209 41.667 0.00 0.00 0.00 3.86
1924 2055 5.104067 ACTGTCCCCAAAATTATACTCCCTC 60.104 44.000 0.00 0.00 0.00 4.30
1925 2056 4.794067 ACTGTCCCCAAAATTATACTCCCT 59.206 41.667 0.00 0.00 0.00 4.20
1926 2057 5.125367 ACTGTCCCCAAAATTATACTCCC 57.875 43.478 0.00 0.00 0.00 4.30
1927 2058 5.949952 ACAACTGTCCCCAAAATTATACTCC 59.050 40.000 0.00 0.00 0.00 3.85
1928 2059 7.827729 ACTACAACTGTCCCCAAAATTATACTC 59.172 37.037 0.00 0.00 0.00 2.59
1929 2060 7.696017 ACTACAACTGTCCCCAAAATTATACT 58.304 34.615 0.00 0.00 0.00 2.12
1930 2061 7.933215 ACTACAACTGTCCCCAAAATTATAC 57.067 36.000 0.00 0.00 0.00 1.47
1931 2062 8.828751 ACTACTACAACTGTCCCCAAAATTATA 58.171 33.333 0.00 0.00 0.00 0.98
1932 2063 7.696017 ACTACTACAACTGTCCCCAAAATTAT 58.304 34.615 0.00 0.00 0.00 1.28
1933 2064 7.081857 ACTACTACAACTGTCCCCAAAATTA 57.918 36.000 0.00 0.00 0.00 1.40
1934 2065 5.948842 ACTACTACAACTGTCCCCAAAATT 58.051 37.500 0.00 0.00 0.00 1.82
1935 2066 5.578157 ACTACTACAACTGTCCCCAAAAT 57.422 39.130 0.00 0.00 0.00 1.82
1936 2067 6.497624 TTACTACTACAACTGTCCCCAAAA 57.502 37.500 0.00 0.00 0.00 2.44
1937 2068 6.691255 ATTACTACTACAACTGTCCCCAAA 57.309 37.500 0.00 0.00 0.00 3.28
1938 2069 6.955851 AGTATTACTACTACAACTGTCCCCAA 59.044 38.462 0.00 0.00 36.40 4.12
1939 2070 6.496743 AGTATTACTACTACAACTGTCCCCA 58.503 40.000 0.00 0.00 36.40 4.96
1940 2071 7.777440 ACTAGTATTACTACTACAACTGTCCCC 59.223 40.741 0.00 0.00 39.04 4.81
1941 2072 8.744568 ACTAGTATTACTACTACAACTGTCCC 57.255 38.462 0.00 0.00 39.04 4.46
1959 2090 9.326413 GCATACCACACTTCAAAATACTAGTAT 57.674 33.333 9.71 9.71 0.00 2.12
1960 2091 8.315482 TGCATACCACACTTCAAAATACTAGTA 58.685 33.333 4.77 4.77 0.00 1.82
1961 2092 7.165485 TGCATACCACACTTCAAAATACTAGT 58.835 34.615 0.00 0.00 0.00 2.57
1962 2093 7.609760 TGCATACCACACTTCAAAATACTAG 57.390 36.000 0.00 0.00 0.00 2.57
1988 2119 3.454447 AGTCATACGATGGATGGGTTCAA 59.546 43.478 0.00 0.00 0.00 2.69
2028 2344 6.097356 ACGAATTTAGCGTGTAAAGATCTCA 58.903 36.000 0.00 0.00 40.94 3.27
2080 2405 6.974622 AGAAGTAAACACAAAGTTCATGCAAG 59.025 34.615 0.00 0.00 40.26 4.01
2158 2483 1.612463 ACTTGGACGTACTGACTGACC 59.388 52.381 0.00 0.00 0.00 4.02
2262 2587 8.211116 TCTCTAGACCGTACAAGAAAATCTAG 57.789 38.462 0.00 0.00 36.88 2.43
2270 2595 5.014858 ACCATTTCTCTAGACCGTACAAGA 58.985 41.667 0.00 0.00 0.00 3.02
2295 2672 9.994432 CGAGGCCATTATCTAATAAATTTGATC 57.006 33.333 5.01 0.00 34.81 2.92
2310 2687 5.812642 CGCTAGATAATTTCGAGGCCATTAT 59.187 40.000 5.01 5.15 0.00 1.28
2316 2693 5.433005 GTTTTCGCTAGATAATTTCGAGGC 58.567 41.667 0.00 0.00 0.00 4.70
2337 2714 4.888823 GGGATCGACTTCTACTAAGAGGTT 59.111 45.833 0.00 0.00 41.77 3.50
2339 2716 3.822167 GGGGATCGACTTCTACTAAGAGG 59.178 52.174 0.00 0.00 35.04 3.69
2341 2718 3.474600 CGGGGATCGACTTCTACTAAGA 58.525 50.000 0.00 0.00 42.43 2.10
2347 2724 0.396695 AAGCCGGGGATCGACTTCTA 60.397 55.000 2.18 0.00 36.93 2.10
2349 2726 1.090052 CAAAGCCGGGGATCGACTTC 61.090 60.000 2.18 0.00 40.59 3.01
2350 2727 1.078426 CAAAGCCGGGGATCGACTT 60.078 57.895 2.18 0.00 43.22 3.01
2351 2728 1.338136 ATCAAAGCCGGGGATCGACT 61.338 55.000 2.18 0.00 42.43 4.18
2352 2729 0.463833 AATCAAAGCCGGGGATCGAC 60.464 55.000 2.18 0.00 42.43 4.20
2354 2731 1.102978 AAAATCAAAGCCGGGGATCG 58.897 50.000 2.18 0.00 38.88 3.69
2355 2732 1.136891 CCAAAATCAAAGCCGGGGATC 59.863 52.381 2.18 0.00 0.00 3.36
2356 2733 1.194218 CCAAAATCAAAGCCGGGGAT 58.806 50.000 2.18 0.00 0.00 3.85
2358 2735 1.596408 CCCAAAATCAAAGCCGGGG 59.404 57.895 2.18 0.00 0.00 5.73
2359 2736 1.191489 ACCCCAAAATCAAAGCCGGG 61.191 55.000 2.18 0.00 35.06 5.73
2360 2737 1.476488 CTACCCCAAAATCAAAGCCGG 59.524 52.381 0.00 0.00 0.00 6.13
2381 2772 6.210385 ACCAATGCATACCACACTTCAAAATA 59.790 34.615 0.00 0.00 0.00 1.40
2387 2779 3.492421 CACCAATGCATACCACACTTC 57.508 47.619 0.00 0.00 0.00 3.01
2408 2800 2.286418 GCGCTCGGGTCTGAAATTTATG 60.286 50.000 0.00 0.00 0.00 1.90
2411 2804 1.635663 CGCGCTCGGGTCTGAAATTT 61.636 55.000 5.56 0.00 0.00 1.82
2412 2805 2.100631 CGCGCTCGGGTCTGAAATT 61.101 57.895 5.56 0.00 0.00 1.82
2413 2806 2.509336 CGCGCTCGGGTCTGAAAT 60.509 61.111 5.56 0.00 0.00 2.17
2511 2904 1.673665 CAGCTGCAGGTTCTGGTCC 60.674 63.158 17.45 0.00 31.21 4.46
2850 3243 4.675029 AACGGACGAGGGGCAACG 62.675 66.667 0.00 0.00 37.60 4.10
2851 3244 3.047877 CAACGGACGAGGGGCAAC 61.048 66.667 0.00 0.00 0.00 4.17
2854 3247 4.778143 ATGCAACGGACGAGGGGC 62.778 66.667 0.00 0.00 0.00 5.80
2855 3248 2.819595 CATGCAACGGACGAGGGG 60.820 66.667 0.00 0.00 0.00 4.79
2856 3249 3.499737 GCATGCAACGGACGAGGG 61.500 66.667 14.21 0.00 0.00 4.30
2857 3250 2.434884 AGCATGCAACGGACGAGG 60.435 61.111 21.98 0.00 0.00 4.63
2858 3251 2.456119 GGAGCATGCAACGGACGAG 61.456 63.158 21.98 0.00 0.00 4.18
2859 3252 2.434185 GGAGCATGCAACGGACGA 60.434 61.111 21.98 0.00 0.00 4.20
2896 3299 7.158075 CGCGCGTAAAAATACAAATTCAAATTC 59.842 33.333 24.19 0.00 0.00 2.17
2897 3300 6.945491 CGCGCGTAAAAATACAAATTCAAATT 59.055 30.769 24.19 0.00 0.00 1.82
2898 3301 6.088350 ACGCGCGTAAAAATACAAATTCAAAT 59.912 30.769 37.08 0.58 0.00 2.32
2900 3303 4.910456 ACGCGCGTAAAAATACAAATTCAA 59.090 33.333 37.08 0.00 0.00 2.69
2901 3304 4.318593 CACGCGCGTAAAAATACAAATTCA 59.681 37.500 37.24 0.00 0.00 2.57
2902 3305 4.770535 GCACGCGCGTAAAAATACAAATTC 60.771 41.667 37.24 0.00 0.00 2.17
2903 3306 3.058390 GCACGCGCGTAAAAATACAAATT 59.942 39.130 37.24 4.17 0.00 1.82
2904 3307 2.590712 GCACGCGCGTAAAAATACAAAT 59.409 40.909 37.24 4.71 0.00 2.32
2905 3308 1.970608 GCACGCGCGTAAAAATACAAA 59.029 42.857 37.24 0.00 0.00 2.83
2906 3309 1.593426 GCACGCGCGTAAAAATACAA 58.407 45.000 37.24 0.00 0.00 2.41
2907 3310 3.277360 GCACGCGCGTAAAAATACA 57.723 47.368 37.24 0.00 0.00 2.29
2922 3325 4.314440 TGTCCCTCCTGCACGCAC 62.314 66.667 0.00 0.00 0.00 5.34
2923 3326 4.007644 CTGTCCCTCCTGCACGCA 62.008 66.667 0.00 0.00 0.00 5.24
2925 3328 3.245668 AAGCTGTCCCTCCTGCACG 62.246 63.158 0.00 0.00 0.00 5.34
2926 3329 1.376553 GAAGCTGTCCCTCCTGCAC 60.377 63.158 0.00 0.00 0.00 4.57
2947 3350 4.077184 CAGAAGGCCCGGTGCGTA 62.077 66.667 0.00 0.00 42.61 4.42
3065 3471 1.915614 GACGGCAGCATGAGGTTGTG 61.916 60.000 0.00 0.00 39.69 3.33
3066 3472 1.672356 GACGGCAGCATGAGGTTGT 60.672 57.895 0.00 0.00 39.69 3.32
3067 3473 2.401766 GGACGGCAGCATGAGGTTG 61.402 63.158 0.00 0.00 39.69 3.77
3344 3750 4.479993 GGACATGCTCGCCAGGCT 62.480 66.667 10.54 0.00 0.00 4.58
3644 4056 4.812476 CCGGCGCTCATCGTCCAA 62.812 66.667 7.64 0.00 40.23 3.53
3693 4105 1.980052 CCCATGTAGTCCACCACGT 59.020 57.895 0.00 0.00 0.00 4.49
3809 4221 0.539901 TCTCTCCCGTATAGCCTGCC 60.540 60.000 0.00 0.00 0.00 4.85
3818 4230 1.593787 AGACGTCGTCTCTCCCGTA 59.406 57.895 22.05 0.00 38.71 4.02
3879 4291 7.288621 TCTCTGGTAGATTCATCAGATAGCAAA 59.711 37.037 0.00 0.00 35.95 3.68
3880 4292 6.779539 TCTCTGGTAGATTCATCAGATAGCAA 59.220 38.462 0.00 0.00 35.95 3.91
3881 4293 6.310149 TCTCTGGTAGATTCATCAGATAGCA 58.690 40.000 0.00 0.00 35.95 3.49
3909 4321 2.283298 AGATGGATGAACACATCGCAC 58.717 47.619 0.00 0.00 46.13 5.34
3913 4325 5.282055 TCAGGTAGATGGATGAACACATC 57.718 43.478 0.00 0.00 42.87 3.06
3952 4364 0.035439 GGCTTTGCTACCTGGCTGTA 60.035 55.000 0.00 0.00 0.00 2.74
3956 4368 1.095600 GTAAGGCTTTGCTACCTGGC 58.904 55.000 4.45 0.00 36.07 4.85
3960 4372 4.261801 TGATTCAGTAAGGCTTTGCTACC 58.738 43.478 4.45 0.00 0.00 3.18
3975 4387 2.497138 TGTGCTGGTTGACTGATTCAG 58.503 47.619 12.17 12.17 34.94 3.02
3977 4389 2.816087 ACATGTGCTGGTTGACTGATTC 59.184 45.455 0.00 0.00 0.00 2.52
3980 4392 2.549992 GGTACATGTGCTGGTTGACTGA 60.550 50.000 13.86 0.00 0.00 3.41
3981 4393 1.806542 GGTACATGTGCTGGTTGACTG 59.193 52.381 13.86 0.00 0.00 3.51
4008 4420 7.992033 GGGTCTCTACTCTACAATTCTACTACA 59.008 40.741 0.00 0.00 0.00 2.74
4009 4421 8.212995 AGGGTCTCTACTCTACAATTCTACTAC 58.787 40.741 0.00 0.00 33.40 2.73
4010 4422 8.334522 AGGGTCTCTACTCTACAATTCTACTA 57.665 38.462 0.00 0.00 33.40 1.82
4011 4423 7.215743 AGGGTCTCTACTCTACAATTCTACT 57.784 40.000 0.00 0.00 33.40 2.57
4012 4424 6.203338 CGAGGGTCTCTACTCTACAATTCTAC 59.797 46.154 0.00 0.00 36.20 2.59
4013 4425 6.099413 TCGAGGGTCTCTACTCTACAATTCTA 59.901 42.308 0.00 0.00 36.20 2.10
4014 4426 5.104444 TCGAGGGTCTCTACTCTACAATTCT 60.104 44.000 0.00 0.00 36.20 2.40
4015 4427 5.124645 TCGAGGGTCTCTACTCTACAATTC 58.875 45.833 0.00 0.00 36.20 2.17
4016 4428 5.113446 TCGAGGGTCTCTACTCTACAATT 57.887 43.478 0.00 0.00 36.20 2.32
4017 4429 4.774660 TCGAGGGTCTCTACTCTACAAT 57.225 45.455 0.00 0.00 36.20 2.71
4018 4430 4.774660 ATCGAGGGTCTCTACTCTACAA 57.225 45.455 0.00 0.00 36.20 2.41
4027 4439 0.818296 CCGTTGAATCGAGGGTCTCT 59.182 55.000 1.12 0.00 0.00 3.10
4033 4445 3.064207 TGAAAGTTCCGTTGAATCGAGG 58.936 45.455 0.00 0.00 31.98 4.63
4045 4457 6.966021 TGCTGTAACTGTAAATGAAAGTTCC 58.034 36.000 0.00 0.00 35.77 3.62
4046 4458 7.861630 TCTGCTGTAACTGTAAATGAAAGTTC 58.138 34.615 0.00 0.00 35.77 3.01
4053 4465 5.220739 GCCATCTCTGCTGTAACTGTAAATG 60.221 44.000 0.00 0.00 0.00 2.32
4054 4466 4.878397 GCCATCTCTGCTGTAACTGTAAAT 59.122 41.667 0.00 0.00 0.00 1.40
4057 4469 3.099905 AGCCATCTCTGCTGTAACTGTA 58.900 45.455 0.00 0.00 37.76 2.74
4092 4504 4.900684 TCACCATTGTAGAATCGGTTTCA 58.099 39.130 4.63 0.00 36.75 2.69
4105 4517 2.358898 GTGTCTTGCTGTTCACCATTGT 59.641 45.455 0.00 0.00 0.00 2.71
4109 4521 2.092968 AGAAGTGTCTTGCTGTTCACCA 60.093 45.455 0.00 0.00 0.00 4.17
4210 4624 5.569355 GATCTCATCTGATCTAGTCCCTCA 58.431 45.833 0.00 0.00 39.61 3.86
4300 4714 2.653366 ACTCCTTCCCTGTGGTAGAGTA 59.347 50.000 0.00 0.00 35.80 2.59
4301 4715 1.433592 ACTCCTTCCCTGTGGTAGAGT 59.566 52.381 0.00 0.00 34.05 3.24
4302 4716 2.239681 ACTCCTTCCCTGTGGTAGAG 57.760 55.000 0.00 0.00 30.89 2.43
4303 4717 2.292061 GGTACTCCTTCCCTGTGGTAGA 60.292 54.545 0.00 0.00 30.89 2.59
4304 4718 2.108970 GGTACTCCTTCCCTGTGGTAG 58.891 57.143 0.00 0.00 0.00 3.18
4387 4808 0.177141 CATGGCTTGCATTTCCCCAG 59.823 55.000 0.00 0.00 0.00 4.45
4457 4878 3.738281 CGACGCCACTTGAAGAAGGATAT 60.738 47.826 11.48 0.00 32.95 1.63
4476 4904 2.908817 TTTCCTCCGAAACAGCGAC 58.091 52.632 0.00 0.00 32.96 5.19
4491 4919 2.851195 TCTTGACCCTTGCTCTGTTTC 58.149 47.619 0.00 0.00 0.00 2.78
4551 4981 7.288389 AGCCCATCTGATATTTTGATGCTTAAA 59.712 33.333 0.00 0.00 37.01 1.52
4586 5016 1.948145 CTATCGTCGGACTAGCCACTT 59.052 52.381 6.57 0.00 35.94 3.16
4612 5042 4.519540 ATTTTCTAAGCGCACCAAACAT 57.480 36.364 11.47 0.00 0.00 2.71
4678 5109 1.471851 GCCGGTTCTCTCTAGCTTTCC 60.472 57.143 1.90 0.00 0.00 3.13
4680 5111 1.267121 TGCCGGTTCTCTCTAGCTTT 58.733 50.000 1.90 0.00 0.00 3.51
4699 5130 5.124776 TCTCGAACACAAGTGGTTGATTTTT 59.875 36.000 8.55 0.00 39.76 1.94
4736 5168 2.095567 CCCTTCTTCTGAATGTTGCGTG 60.096 50.000 0.00 0.00 0.00 5.34
4738 5170 1.470098 CCCCTTCTTCTGAATGTTGCG 59.530 52.381 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.