Multiple sequence alignment - TraesCS3D01G449600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G449600 chr3D 100.000 4823 0 0 1 4823 557793896 557798718 0.000000e+00 8907.0
1 TraesCS3D01G449600 chr3D 83.966 2582 273 64 964 3480 557914194 557916699 0.000000e+00 2344.0
2 TraesCS3D01G449600 chr3D 83.107 2066 224 56 1014 3020 557879056 557881055 0.000000e+00 1766.0
3 TraesCS3D01G449600 chr3D 83.251 812 109 12 1540 2324 557721699 557722510 0.000000e+00 721.0
4 TraesCS3D01G449600 chr3D 77.619 840 122 33 3043 3859 557881200 557881996 2.650000e-122 449.0
5 TraesCS3D01G449600 chr3D 89.000 300 30 2 1034 1330 536335008 536335307 7.630000e-98 368.0
6 TraesCS3D01G449600 chr3D 86.462 325 37 2 2475 2799 557922395 557922712 2.760000e-92 350.0
7 TraesCS3D01G449600 chr3D 86.928 306 34 6 1028 1330 557721142 557721444 5.980000e-89 339.0
8 TraesCS3D01G449600 chr3B 91.165 2309 148 17 34 2307 740050450 740052737 0.000000e+00 3083.0
9 TraesCS3D01G449600 chr3B 91.536 1536 73 20 2343 3860 740052922 740054418 0.000000e+00 2063.0
10 TraesCS3D01G449600 chr3B 83.277 2075 218 57 1014 3021 740503039 740505051 0.000000e+00 1790.0
11 TraesCS3D01G449600 chr3B 85.082 1287 133 26 964 2212 740514487 740515752 0.000000e+00 1258.0
12 TraesCS3D01G449600 chr3B 86.416 957 95 10 1568 2493 740101279 740102231 0.000000e+00 1014.0
13 TraesCS3D01G449600 chr3B 89.820 776 59 8 3093 3860 740495650 740496413 0.000000e+00 977.0
14 TraesCS3D01G449600 chr3B 87.986 591 49 8 2495 3084 740494912 740495481 0.000000e+00 678.0
15 TraesCS3D01G449600 chr3B 77.103 939 161 38 1531 2445 740541259 740542167 1.210000e-135 494.0
16 TraesCS3D01G449600 chr3B 76.667 840 127 35 3047 3857 740041721 740042520 7.520000e-108 401.0
17 TraesCS3D01G449600 chr3B 90.000 300 27 2 1034 1330 708796750 708797049 7.570000e-103 385.0
18 TraesCS3D01G449600 chr3B 88.926 298 28 3 1034 1330 740540765 740541058 3.550000e-96 363.0
19 TraesCS3D01G449600 chr3B 80.222 541 54 25 1047 1559 740100121 740100636 1.650000e-94 357.0
20 TraesCS3D01G449600 chr3B 86.196 326 36 4 2475 2799 740542119 740542436 1.290000e-90 344.0
21 TraesCS3D01G449600 chr3B 79.592 441 40 16 4131 4546 740496966 740497381 2.210000e-68 270.0
22 TraesCS3D01G449600 chr3B 79.494 395 49 19 3468 3852 708798458 708798830 8.010000e-63 252.0
23 TraesCS3D01G449600 chr3B 84.232 241 27 6 2211 2443 740516597 740516834 1.750000e-54 224.0
24 TraesCS3D01G449600 chr3B 86.992 123 15 1 4128 4250 740056575 740056696 2.340000e-28 137.0
25 TraesCS3D01G449600 chr3B 91.304 92 8 0 4316 4407 740056729 740056820 5.070000e-25 126.0
26 TraesCS3D01G449600 chr3B 94.667 75 3 1 3873 3947 740054903 740054976 1.100000e-21 115.0
27 TraesCS3D01G449600 chr3B 100.000 35 0 0 2306 2340 740052861 740052895 1.120000e-06 65.8
28 TraesCS3D01G449600 chr3B 94.444 36 2 0 3875 3910 740518742 740518777 6.740000e-04 56.5
29 TraesCS3D01G449600 chr3A 94.853 1360 41 8 1604 2959 693581528 693582862 0.000000e+00 2097.0
30 TraesCS3D01G449600 chr3A 88.965 1613 121 22 34 1606 693570892 693572487 0.000000e+00 1940.0
31 TraesCS3D01G449600 chr3A 82.306 2368 269 79 964 3273 693646997 693649272 0.000000e+00 1914.0
32 TraesCS3D01G449600 chr3A 94.084 693 29 4 2939 3631 693583247 693583927 0.000000e+00 1042.0
33 TraesCS3D01G449600 chr3A 77.419 837 123 35 3043 3859 693615291 693616081 5.730000e-119 438.0
34 TraesCS3D01G449600 chr3A 79.872 626 78 23 3048 3669 671761721 671762302 9.660000e-112 414.0
35 TraesCS3D01G449600 chr3A 88.715 319 30 4 1018 1330 671759980 671760298 7.570000e-103 385.0
36 TraesCS3D01G449600 chr3A 86.634 202 10 5 3676 3860 693583928 693584129 1.760000e-49 207.0
37 TraesCS3D01G449600 chr3A 91.870 123 10 0 4285 4407 693586912 693587034 6.420000e-39 172.0
38 TraesCS3D01G449600 chr3A 83.333 168 28 0 616 783 160512759 160512592 6.460000e-34 156.0
39 TraesCS3D01G449600 chr3A 87.671 73 8 1 4192 4264 693586844 693586915 3.090000e-12 84.2
40 TraesCS3D01G449600 chr3A 97.368 38 1 0 3873 3910 693650451 693650488 1.120000e-06 65.8
41 TraesCS3D01G449600 chr4A 94.258 209 10 2 4543 4750 642897020 642897227 7.790000e-83 318.0
42 TraesCS3D01G449600 chr4A 91.329 173 12 3 4545 4715 709623445 709623616 2.900000e-57 233.0
43 TraesCS3D01G449600 chr7B 91.204 216 11 2 4543 4750 679424046 679424261 2.200000e-73 287.0
44 TraesCS3D01G449600 chr7B 93.220 177 11 1 4543 4718 736624234 736624058 4.790000e-65 259.0
45 TraesCS3D01G449600 chr2D 85.135 296 18 6 4545 4814 35547986 35548281 3.680000e-71 279.0
46 TraesCS3D01G449600 chr6A 86.982 169 6 7 4633 4785 573014572 573014404 4.960000e-40 176.0
47 TraesCS3D01G449600 chr2B 70.355 479 127 11 116 588 624772879 624772410 3.090000e-12 84.2
48 TraesCS3D01G449600 chr2B 100.000 30 0 0 3916 3945 765398010 765397981 6.740000e-04 56.5
49 TraesCS3D01G449600 chr7A 100.000 30 0 0 3916 3945 474281915 474281886 6.740000e-04 56.5
50 TraesCS3D01G449600 chr6D 100.000 29 0 0 4543 4571 395217061 395217033 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G449600 chr3D 557793896 557798718 4822 False 8907.000000 8907 100.000000 1 4823 1 chr3D.!!$F2 4822
1 TraesCS3D01G449600 chr3D 557914194 557916699 2505 False 2344.000000 2344 83.966000 964 3480 1 chr3D.!!$F3 2516
2 TraesCS3D01G449600 chr3D 557879056 557881996 2940 False 1107.500000 1766 80.363000 1014 3859 2 chr3D.!!$F6 2845
3 TraesCS3D01G449600 chr3D 557721142 557722510 1368 False 530.000000 721 85.089500 1028 2324 2 chr3D.!!$F5 1296
4 TraesCS3D01G449600 chr3B 740503039 740505051 2012 False 1790.000000 1790 83.277000 1014 3021 1 chr3B.!!$F2 2007
5 TraesCS3D01G449600 chr3B 740050450 740056820 6370 False 931.633333 3083 92.610667 34 4407 6 chr3B.!!$F4 4373
6 TraesCS3D01G449600 chr3B 740100121 740102231 2110 False 685.500000 1014 83.319000 1047 2493 2 chr3B.!!$F5 1446
7 TraesCS3D01G449600 chr3B 740494912 740497381 2469 False 641.666667 977 85.799333 2495 4546 3 chr3B.!!$F6 2051
8 TraesCS3D01G449600 chr3B 740514487 740518777 4290 False 512.833333 1258 87.919333 964 3910 3 chr3B.!!$F7 2946
9 TraesCS3D01G449600 chr3B 740041721 740042520 799 False 401.000000 401 76.667000 3047 3857 1 chr3B.!!$F1 810
10 TraesCS3D01G449600 chr3B 740540765 740542436 1671 False 400.333333 494 84.075000 1034 2799 3 chr3B.!!$F8 1765
11 TraesCS3D01G449600 chr3B 708796750 708798830 2080 False 318.500000 385 84.747000 1034 3852 2 chr3B.!!$F3 2818
12 TraesCS3D01G449600 chr3A 693570892 693572487 1595 False 1940.000000 1940 88.965000 34 1606 1 chr3A.!!$F1 1572
13 TraesCS3D01G449600 chr3A 693646997 693650488 3491 False 989.900000 1914 89.837000 964 3910 2 chr3A.!!$F5 2946
14 TraesCS3D01G449600 chr3A 693581528 693587034 5506 False 720.440000 2097 91.022400 1604 4407 5 chr3A.!!$F4 2803
15 TraesCS3D01G449600 chr3A 693615291 693616081 790 False 438.000000 438 77.419000 3043 3859 1 chr3A.!!$F2 816
16 TraesCS3D01G449600 chr3A 671759980 671762302 2322 False 399.500000 414 84.293500 1018 3669 2 chr3A.!!$F3 2651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.037326 ACGACGTGTGCATCAAGGAT 60.037 50.000 0.0 0.0 0.00 3.24 F
995 1030 0.323451 CTACCCAAACCCTGAAGCCC 60.323 60.000 0.0 0.0 0.00 5.19 F
2167 2980 0.625683 AATGATGACCTGGGCTCCCT 60.626 55.000 0.0 0.0 36.94 4.20 F
2179 2992 1.341089 GGGCTCCCTTTTTCCCTACTG 60.341 57.143 0.0 0.0 35.87 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2876 0.108138 GCGCCTGACATCCAAGTAGT 60.108 55.000 0.00 0.0 0.00 2.73 R
2179 2992 1.949257 CAAACCTTGCAGGACGGAC 59.051 57.895 8.91 0.0 37.67 4.79 R
3323 6737 2.027469 ACTAGGAAACATTCGTGGGGAC 60.027 50.000 0.00 0.0 31.40 4.46 R
4170 11734 2.331805 CGACGGCGAGGTCCATAG 59.668 66.667 16.62 0.0 40.82 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.471702 AATCCATCACAGATTAACAGATTTCTT 57.528 29.630 0.00 0.00 32.20 2.52
27 28 8.272545 TCCATCACAGATTAACAGATTTCTTG 57.727 34.615 0.00 0.00 0.00 3.02
28 29 7.884877 TCCATCACAGATTAACAGATTTCTTGT 59.115 33.333 0.00 0.00 0.00 3.16
29 30 9.166173 CCATCACAGATTAACAGATTTCTTGTA 57.834 33.333 0.00 0.00 0.00 2.41
31 32 9.950496 ATCACAGATTAACAGATTTCTTGTAGT 57.050 29.630 0.00 0.00 0.00 2.73
32 33 9.208022 TCACAGATTAACAGATTTCTTGTAGTG 57.792 33.333 0.00 0.00 0.00 2.74
82 83 4.825422 ACAAGAGATGTCGTGAATGTCAT 58.175 39.130 12.62 0.00 37.96 3.06
159 160 5.180868 GGTTTGCTGATAAGGATAGATGCAG 59.819 44.000 0.00 0.00 0.00 4.41
164 165 5.816777 GCTGATAAGGATAGATGCAGAATCC 59.183 44.000 14.10 14.10 39.64 3.01
180 181 5.240891 CAGAATCCTTACGGTGATGCATAT 58.759 41.667 0.00 0.00 0.00 1.78
201 202 0.390866 ATCTGGACAGCTCGCAACAG 60.391 55.000 0.00 0.00 0.00 3.16
217 218 4.260497 CGCAACAGATGGACACATGAATAG 60.260 45.833 0.00 0.00 37.47 1.73
230 231 5.132648 ACACATGAATAGGAGCCCTTTGATA 59.867 40.000 0.00 0.00 34.61 2.15
255 256 1.626321 TCATGCGGTCAAGAGGGTAAA 59.374 47.619 0.00 0.00 0.00 2.01
266 267 5.295540 GTCAAGAGGGTAAAAGATGATCTGC 59.704 44.000 0.00 0.00 0.00 4.26
272 273 5.059833 GGGTAAAAGATGATCTGCCAGTAG 58.940 45.833 0.00 0.00 0.00 2.57
289 290 5.091261 CAGTAGTGGACAAGCCTTTAGAT 57.909 43.478 0.00 0.00 37.63 1.98
311 312 0.037326 ACGACGTGTGCATCAAGGAT 60.037 50.000 0.00 0.00 0.00 3.24
327 328 4.019174 CAAGGATAGTGCTGGAAACCATT 58.981 43.478 0.00 0.00 30.82 3.16
342 343 1.715931 ACCATTTGATCCAGGTTGGGA 59.284 47.619 0.00 0.00 42.21 4.37
357 358 7.062957 CCAGGTTGGGAAAAGATCAATACTAT 58.937 38.462 0.00 0.00 32.67 2.12
358 359 7.561356 CCAGGTTGGGAAAAGATCAATACTATT 59.439 37.037 0.00 0.00 32.67 1.73
360 361 8.336235 AGGTTGGGAAAAGATCAATACTATTGA 58.664 33.333 12.86 12.86 0.00 2.57
361 362 8.406297 GGTTGGGAAAAGATCAATACTATTGAC 58.594 37.037 12.76 7.97 0.00 3.18
381 382 3.559069 ACGCCATTGATTCCATTCTCAT 58.441 40.909 0.00 0.00 0.00 2.90
401 402 2.661176 AATGGAGGTGGAGGAGGTAA 57.339 50.000 0.00 0.00 0.00 2.85
404 405 2.929301 TGGAGGTGGAGGAGGTAAAAT 58.071 47.619 0.00 0.00 0.00 1.82
419 420 6.195600 AGGTAAAATCAGACCACACCTTTA 57.804 37.500 0.00 0.00 38.27 1.85
424 425 7.839680 AAAATCAGACCACACCTTTATTTCT 57.160 32.000 0.00 0.00 0.00 2.52
449 450 4.104897 AGGAGCCTGAAGTAAACCTTTTCT 59.895 41.667 0.00 0.00 32.03 2.52
510 511 2.655474 GCGATAAGGTGTAGTATTCGCG 59.345 50.000 0.00 0.00 34.54 5.87
516 517 1.323534 GGTGTAGTATTCGCGCAACTG 59.676 52.381 8.75 0.00 0.00 3.16
527 528 2.895424 CGCAACTGAGGGGGTCCTT 61.895 63.158 0.00 0.00 45.05 3.36
554 555 7.223387 GCATGTGATAATGAAAGGGATTGTTTC 59.777 37.037 0.00 0.00 34.95 2.78
579 580 1.410004 TGTCAACCTCTGGTCTTCGT 58.590 50.000 0.00 0.00 33.12 3.85
592 593 2.076100 GTCTTCGTGGCACAATGATCA 58.924 47.619 19.09 0.00 44.16 2.92
675 678 3.672511 GCACGCTACTAGTCTTACAAGCA 60.673 47.826 12.33 0.00 0.00 3.91
683 686 2.699954 AGTCTTACAAGCACCGATTGG 58.300 47.619 0.00 0.00 42.84 3.16
708 711 2.105821 ACTGATGAAAGTTCGGGGTTCA 59.894 45.455 0.00 0.00 35.83 3.18
742 768 4.533222 CTTGTGACCGATTGTAACCAAAC 58.467 43.478 0.00 0.00 33.44 2.93
802 833 8.928733 GTCAAAATCAAAATGTGTGCATCTATT 58.071 29.630 0.00 0.00 33.50 1.73
803 834 8.927721 TCAAAATCAAAATGTGTGCATCTATTG 58.072 29.630 0.00 0.00 33.50 1.90
804 835 8.927721 CAAAATCAAAATGTGTGCATCTATTGA 58.072 29.630 0.00 0.00 36.95 2.57
805 836 9.661563 AAAATCAAAATGTGTGCATCTATTGAT 57.338 25.926 0.00 0.00 40.47 2.57
834 865 5.305585 AGAAAACAAGAACCGATAGCTTGA 58.694 37.500 0.00 0.00 41.03 3.02
901 932 3.083349 TGGACTCGGATGGGCCAG 61.083 66.667 13.78 0.00 35.94 4.85
921 952 1.604378 GCTAGGAGCCCAGCAAAGA 59.396 57.895 1.96 0.00 37.73 2.52
958 993 5.336055 GGATCTTATTCACTCCATCGTCGAT 60.336 44.000 0.75 0.75 0.00 3.59
992 1027 3.421844 CCTTTCTACCCAAACCCTGAAG 58.578 50.000 0.00 0.00 0.00 3.02
995 1030 0.323451 CTACCCAAACCCTGAAGCCC 60.323 60.000 0.00 0.00 0.00 5.19
1074 1136 2.561569 GCGTATGTATCCAAGGTGCTT 58.438 47.619 0.00 0.00 0.00 3.91
1077 1139 4.188462 CGTATGTATCCAAGGTGCTTGAA 58.812 43.478 0.00 0.00 43.42 2.69
1481 1613 3.375642 CACTGTGCTATGACTATGACCG 58.624 50.000 0.00 0.00 0.00 4.79
1656 2454 1.077285 TGGTGATGATGCCTGGCAG 60.077 57.895 27.20 7.75 43.65 4.85
1680 2478 2.277008 ATCTCACCTTGGGGTCAGAT 57.723 50.000 0.00 0.00 46.13 2.90
1785 2589 7.675161 TGTCCTAGATTTGACATCCTCAATA 57.325 36.000 0.00 0.00 38.74 1.90
1792 2596 8.783833 AGATTTGACATCCTCAATATTATCGG 57.216 34.615 0.00 0.00 38.74 4.18
2063 2876 2.016393 GAGATGGGTCGATCCGCACA 62.016 60.000 10.84 0.00 37.00 4.57
2089 2902 3.649277 GATGTCAGGCGCAGGACGT 62.649 63.158 20.91 20.91 46.11 4.34
2161 2974 6.439636 TCTATCCTTTAATGATGACCTGGG 57.560 41.667 0.00 0.00 0.00 4.45
2167 2980 0.625683 AATGATGACCTGGGCTCCCT 60.626 55.000 0.00 0.00 36.94 4.20
2179 2992 1.341089 GGGCTCCCTTTTTCCCTACTG 60.341 57.143 0.00 0.00 35.87 2.74
2606 4541 2.227149 GGTTTTCGGTGTGTAATGGGTC 59.773 50.000 0.00 0.00 0.00 4.46
2638 4573 5.529581 TGATGTTGTGGATAGATAAGCGA 57.470 39.130 0.00 0.00 0.00 4.93
2772 4891 1.982395 CCCTGGTGCTACTCGGACA 60.982 63.158 0.00 0.00 35.37 4.02
3097 6199 2.806434 TGGACCTGCAAATGTAGCATT 58.194 42.857 0.00 0.00 41.82 3.56
3139 6241 4.558226 TGAAGAGCTGAAAGATGCCTAA 57.442 40.909 0.00 0.00 34.07 2.69
3140 6242 5.108187 TGAAGAGCTGAAAGATGCCTAAT 57.892 39.130 0.00 0.00 34.07 1.73
3213 6325 1.649321 AGACAGAGACCCATCAAGCA 58.351 50.000 0.00 0.00 0.00 3.91
3283 6697 5.074804 TGTACAGCCTACTTCTCAACTGTA 58.925 41.667 0.00 0.00 39.06 2.74
3319 6733 6.381481 TGTAATGAGATTGCTAATGCTTGG 57.619 37.500 0.00 0.00 40.48 3.61
3323 6737 5.063180 TGAGATTGCTAATGCTTGGTTTG 57.937 39.130 0.00 0.00 40.48 2.93
3329 6745 2.524306 CTAATGCTTGGTTTGTCCCCA 58.476 47.619 0.00 0.00 34.77 4.96
3441 6864 5.359860 TGTGATCCAGATATATCGCGGTAAT 59.640 40.000 18.40 0.00 0.00 1.89
3443 6866 7.230712 TGTGATCCAGATATATCGCGGTAATAT 59.769 37.037 18.40 5.84 0.00 1.28
3444 6867 8.082852 GTGATCCAGATATATCGCGGTAATATT 58.917 37.037 18.40 0.00 0.00 1.28
3582 7009 5.920193 AATGAAAATATGTGTGACTGGGG 57.080 39.130 0.00 0.00 0.00 4.96
3678 7120 6.252281 TCACCACTTTAATTTATTAAGCGCG 58.748 36.000 0.00 0.00 34.13 6.86
3691 7133 7.886191 TTATTAAGCGCGCTAAACATTTAAG 57.114 32.000 36.73 0.00 0.00 1.85
3769 7234 2.076100 TGGTTTTACGCTGATGCTCAG 58.924 47.619 8.34 8.34 46.90 3.35
3776 7241 1.276421 ACGCTGATGCTCAGTAACCTT 59.724 47.619 12.71 0.00 45.94 3.50
3860 7333 4.400567 GCTTTTGGATGGCTTCTGACTAAT 59.599 41.667 0.07 0.00 0.00 1.73
3861 7334 5.449725 GCTTTTGGATGGCTTCTGACTAATC 60.450 44.000 0.07 0.00 0.00 1.75
3862 7335 3.845781 TGGATGGCTTCTGACTAATCC 57.154 47.619 0.07 0.00 35.23 3.01
3864 7337 3.782523 TGGATGGCTTCTGACTAATCCTT 59.217 43.478 0.07 0.00 35.61 3.36
3865 7338 4.968719 TGGATGGCTTCTGACTAATCCTTA 59.031 41.667 0.07 0.00 35.61 2.69
3866 7339 5.428457 TGGATGGCTTCTGACTAATCCTTAA 59.572 40.000 0.07 0.00 35.61 1.85
3869 7342 7.503902 GGATGGCTTCTGACTAATCCTTAAATT 59.496 37.037 0.07 0.00 32.52 1.82
3870 7343 8.829373 ATGGCTTCTGACTAATCCTTAAATTT 57.171 30.769 0.00 0.00 0.00 1.82
3871 7344 8.650143 TGGCTTCTGACTAATCCTTAAATTTT 57.350 30.769 0.00 0.00 0.00 1.82
3876 7934 8.433421 TCTGACTAATCCTTAAATTTTAGCCG 57.567 34.615 0.00 0.00 0.00 5.52
4011 9428 4.771127 ACGTGAGTGCATCGGTTT 57.229 50.000 0.00 0.00 46.97 3.27
4012 9429 3.000815 ACGTGAGTGCATCGGTTTT 57.999 47.368 0.00 0.00 46.97 2.43
4013 9430 1.305201 ACGTGAGTGCATCGGTTTTT 58.695 45.000 0.00 0.00 46.97 1.94
4039 9456 4.492494 TGAGTGGTAGTGAATGCATCAT 57.508 40.909 0.00 0.00 40.97 2.45
4058 9508 4.397420 TCATGTAAGAGTGGCAATTGTGT 58.603 39.130 7.40 0.00 0.00 3.72
4060 9510 6.179756 TCATGTAAGAGTGGCAATTGTGTAT 58.820 36.000 7.40 0.00 0.00 2.29
4121 11666 3.744719 TTCTCGGGTGCTCGACGG 61.745 66.667 0.00 0.00 35.18 4.79
4156 11720 2.584418 CTCGCTGGTGCTCATCCG 60.584 66.667 0.00 0.00 36.97 4.18
4176 11740 1.685765 ACAGCTGACCGCCTATGGA 60.686 57.895 23.35 0.00 40.39 3.41
4182 11746 3.501458 GACCGCCTATGGACCTCGC 62.501 68.421 0.00 0.00 0.00 5.03
4242 11806 2.434185 GCCATCGCCGAACTGACA 60.434 61.111 0.00 0.00 0.00 3.58
4244 11808 1.970917 GCCATCGCCGAACTGACAAG 61.971 60.000 0.00 0.00 0.00 3.16
4247 11811 1.136252 CATCGCCGAACTGACAAGTTG 60.136 52.381 0.00 0.00 46.84 3.16
4248 11812 1.082756 CGCCGAACTGACAAGTTGC 60.083 57.895 1.81 0.00 46.84 4.17
4250 11814 1.569493 CCGAACTGACAAGTTGCGG 59.431 57.895 1.81 2.80 46.84 5.69
4251 11815 1.082756 CGAACTGACAAGTTGCGGC 60.083 57.895 1.81 0.00 46.84 6.53
4252 11816 1.771073 CGAACTGACAAGTTGCGGCA 61.771 55.000 1.81 0.00 46.84 5.69
4253 11817 0.593128 GAACTGACAAGTTGCGGCAT 59.407 50.000 2.28 0.00 46.84 4.40
4254 11818 0.311790 AACTGACAAGTTGCGGCATG 59.688 50.000 2.28 1.36 45.12 4.06
4255 11819 0.819259 ACTGACAAGTTGCGGCATGT 60.819 50.000 2.28 5.30 30.14 3.21
4257 11821 0.534877 TGACAAGTTGCGGCATGTCT 60.535 50.000 26.38 14.16 42.03 3.41
4258 11822 0.166814 GACAAGTTGCGGCATGTCTC 59.833 55.000 21.77 3.78 39.21 3.36
4259 11823 1.133253 CAAGTTGCGGCATGTCTCG 59.867 57.895 2.28 0.00 0.00 4.04
4260 11824 1.005037 AAGTTGCGGCATGTCTCGA 60.005 52.632 2.28 0.00 0.00 4.04
4261 11825 1.016130 AAGTTGCGGCATGTCTCGAG 61.016 55.000 5.93 5.93 0.00 4.04
4262 11826 2.125552 TTGCGGCATGTCTCGAGG 60.126 61.111 13.56 0.00 0.00 4.63
4263 11827 4.819761 TGCGGCATGTCTCGAGGC 62.820 66.667 10.89 10.89 0.00 4.70
4264 11828 4.819761 GCGGCATGTCTCGAGGCA 62.820 66.667 23.95 23.95 0.00 4.75
4265 11829 2.107750 CGGCATGTCTCGAGGCAT 59.892 61.111 26.45 26.45 0.00 4.40
4266 11830 1.953138 CGGCATGTCTCGAGGCATC 60.953 63.158 29.02 21.57 0.00 3.91
4267 11831 1.596477 GGCATGTCTCGAGGCATCC 60.596 63.158 29.02 25.69 0.00 3.51
4268 11832 1.596477 GCATGTCTCGAGGCATCCC 60.596 63.158 29.02 18.70 0.00 3.85
4269 11833 1.300465 CATGTCTCGAGGCATCCCG 60.300 63.158 29.02 14.97 35.76 5.14
4270 11834 1.758514 ATGTCTCGAGGCATCCCGT 60.759 57.895 26.45 5.37 35.76 5.28
4271 11835 1.330655 ATGTCTCGAGGCATCCCGTT 61.331 55.000 26.45 4.55 35.76 4.44
4272 11836 0.681887 TGTCTCGAGGCATCCCGTTA 60.682 55.000 17.42 0.00 35.76 3.18
4273 11837 0.674534 GTCTCGAGGCATCCCGTTAT 59.325 55.000 13.26 0.00 35.76 1.89
4274 11838 1.884579 GTCTCGAGGCATCCCGTTATA 59.115 52.381 13.26 0.00 35.76 0.98
4275 11839 2.492484 GTCTCGAGGCATCCCGTTATAT 59.508 50.000 13.26 0.00 35.76 0.86
4276 11840 2.492088 TCTCGAGGCATCCCGTTATATG 59.508 50.000 13.56 0.00 35.76 1.78
4277 11841 1.548719 TCGAGGCATCCCGTTATATGG 59.451 52.381 0.00 0.00 35.76 2.74
4278 11842 1.405526 CGAGGCATCCCGTTATATGGG 60.406 57.143 4.49 4.49 46.17 4.00
4279 11843 1.628846 GAGGCATCCCGTTATATGGGT 59.371 52.381 9.72 0.00 45.01 4.51
4280 11844 2.039879 GAGGCATCCCGTTATATGGGTT 59.960 50.000 9.72 0.54 45.01 4.11
4281 11845 2.159382 GGCATCCCGTTATATGGGTTG 58.841 52.381 13.62 13.62 45.01 3.77
4282 11846 2.488347 GGCATCCCGTTATATGGGTTGT 60.488 50.000 16.97 3.37 45.01 3.32
4283 11847 3.244630 GGCATCCCGTTATATGGGTTGTA 60.245 47.826 16.97 0.11 45.01 2.41
4312 11876 1.411977 AGGATCTCATCAGCCTGAACG 59.588 52.381 0.00 0.00 0.00 3.95
4371 11935 2.499685 GGCTACCCGCTCATCGTT 59.500 61.111 0.00 0.00 39.13 3.85
4377 11941 5.509927 GCTACCCGCTCATCGTTATCGAT 62.510 52.174 2.16 2.16 45.42 3.59
4403 11967 4.392940 ACCATTGATGCTATAGAACAGGC 58.607 43.478 3.21 0.00 0.00 4.85
4407 11971 3.717707 TGATGCTATAGAACAGGCGAAC 58.282 45.455 3.21 0.00 0.00 3.95
4408 11972 3.132111 TGATGCTATAGAACAGGCGAACA 59.868 43.478 3.21 0.00 0.00 3.18
4428 12014 1.358725 GCAGAAGCGTACGATGGCAA 61.359 55.000 21.65 0.00 0.00 4.52
4436 12022 1.799181 CGTACGATGGCAAGAGACTGG 60.799 57.143 10.44 0.00 0.00 4.00
4457 12043 6.126863 TGGATTATGAAGTGGTGAAGAAGT 57.873 37.500 0.00 0.00 0.00 3.01
4466 12052 1.179174 GGTGAAGAAGTTGGTGGCCC 61.179 60.000 0.00 0.00 0.00 5.80
4467 12053 1.228124 TGAAGAAGTTGGTGGCCCG 60.228 57.895 0.00 0.00 0.00 6.13
4473 12059 4.941309 GTTGGTGGCCCGTCCGTT 62.941 66.667 0.00 0.00 37.80 4.44
4486 12072 3.181478 CCCGTCCGTTAAAAGATAGAGCT 60.181 47.826 0.00 0.00 0.00 4.09
4487 12073 3.797256 CCGTCCGTTAAAAGATAGAGCTG 59.203 47.826 0.00 0.00 0.00 4.24
4488 12074 3.797256 CGTCCGTTAAAAGATAGAGCTGG 59.203 47.826 0.00 0.00 0.00 4.85
4491 12080 5.063564 GTCCGTTAAAAGATAGAGCTGGTTG 59.936 44.000 0.00 0.00 0.00 3.77
4496 12085 7.148239 CGTTAAAAGATAGAGCTGGTTGGAAAT 60.148 37.037 0.00 0.00 0.00 2.17
4500 12089 2.393271 AGAGCTGGTTGGAAATCTCG 57.607 50.000 0.00 0.00 0.00 4.04
4517 12106 1.621814 CTCGTGGACCCCAAGAACTAA 59.378 52.381 3.46 0.00 41.05 2.24
4518 12107 2.038033 CTCGTGGACCCCAAGAACTAAA 59.962 50.000 3.46 0.00 41.05 1.85
4537 12126 4.753516 AAAAAGAAGACAAAGGGGTTGG 57.246 40.909 0.00 0.00 41.97 3.77
4546 12135 4.595986 GACAAAGGGGTTGGCTTATTAGA 58.404 43.478 0.00 0.00 42.62 2.10
4547 12136 4.600062 ACAAAGGGGTTGGCTTATTAGAG 58.400 43.478 0.00 0.00 41.97 2.43
4548 12137 3.298686 AAGGGGTTGGCTTATTAGAGC 57.701 47.619 0.00 0.00 41.96 4.09
4549 12138 2.205342 AGGGGTTGGCTTATTAGAGCA 58.795 47.619 0.00 0.00 44.49 4.26
4550 12139 2.785857 AGGGGTTGGCTTATTAGAGCAT 59.214 45.455 0.00 0.00 44.49 3.79
4551 12140 3.149981 GGGGTTGGCTTATTAGAGCATC 58.850 50.000 0.00 0.00 44.49 3.91
4562 12151 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
4563 12152 1.078848 GAGCATCTCCAGCCGTTGT 60.079 57.895 0.00 0.00 0.00 3.32
4564 12153 1.364626 GAGCATCTCCAGCCGTTGTG 61.365 60.000 0.00 0.00 0.00 3.33
4565 12154 3.044059 GCATCTCCAGCCGTTGTGC 62.044 63.158 0.00 0.00 0.00 4.57
4566 12155 2.045926 ATCTCCAGCCGTTGTGCC 60.046 61.111 0.00 0.00 0.00 5.01
4567 12156 2.596851 ATCTCCAGCCGTTGTGCCT 61.597 57.895 0.00 0.00 0.00 4.75
4568 12157 2.527951 ATCTCCAGCCGTTGTGCCTC 62.528 60.000 0.00 0.00 0.00 4.70
4569 12158 4.329545 TCCAGCCGTTGTGCCTCC 62.330 66.667 0.00 0.00 0.00 4.30
4574 12163 4.263572 CCGTTGTGCCTCCCCACA 62.264 66.667 0.00 0.00 43.48 4.17
4578 12167 4.641645 TGTGCCTCCCCACAAGCG 62.642 66.667 0.00 0.00 42.33 4.68
4579 12168 4.329545 GTGCCTCCCCACAAGCGA 62.330 66.667 0.00 0.00 35.80 4.93
4580 12169 3.329889 TGCCTCCCCACAAGCGAT 61.330 61.111 0.00 0.00 0.00 4.58
4581 12170 2.044946 GCCTCCCCACAAGCGATT 60.045 61.111 0.00 0.00 0.00 3.34
4582 12171 1.678970 GCCTCCCCACAAGCGATTT 60.679 57.895 0.00 0.00 0.00 2.17
4583 12172 1.250840 GCCTCCCCACAAGCGATTTT 61.251 55.000 0.00 0.00 0.00 1.82
4584 12173 1.256812 CCTCCCCACAAGCGATTTTT 58.743 50.000 0.00 0.00 0.00 1.94
4585 12174 1.067635 CCTCCCCACAAGCGATTTTTG 60.068 52.381 0.00 0.00 0.00 2.44
4586 12175 0.316841 TCCCCACAAGCGATTTTTGC 59.683 50.000 0.00 0.00 0.00 3.68
4587 12176 1.008361 CCCCACAAGCGATTTTTGCG 61.008 55.000 0.00 0.00 37.44 4.85
4594 12183 3.981303 CGATTTTTGCGCCGGATG 58.019 55.556 5.05 0.00 0.00 3.51
4595 12184 1.427419 CGATTTTTGCGCCGGATGA 59.573 52.632 5.05 0.00 0.00 2.92
4596 12185 0.179176 CGATTTTTGCGCCGGATGAA 60.179 50.000 5.05 0.00 0.00 2.57
4597 12186 1.533756 CGATTTTTGCGCCGGATGAAT 60.534 47.619 5.05 0.00 0.00 2.57
4598 12187 1.854126 GATTTTTGCGCCGGATGAATG 59.146 47.619 5.05 0.00 0.00 2.67
4599 12188 0.600557 TTTTTGCGCCGGATGAATGT 59.399 45.000 5.05 0.00 0.00 2.71
4600 12189 0.600557 TTTTGCGCCGGATGAATGTT 59.399 45.000 5.05 0.00 0.00 2.71
4601 12190 0.600557 TTTGCGCCGGATGAATGTTT 59.399 45.000 5.05 0.00 0.00 2.83
4602 12191 1.454201 TTGCGCCGGATGAATGTTTA 58.546 45.000 5.05 0.00 0.00 2.01
4603 12192 1.674359 TGCGCCGGATGAATGTTTAT 58.326 45.000 5.05 0.00 0.00 1.40
4604 12193 1.601903 TGCGCCGGATGAATGTTTATC 59.398 47.619 5.05 0.00 0.00 1.75
4605 12194 1.398451 GCGCCGGATGAATGTTTATCG 60.398 52.381 5.05 0.00 0.00 2.92
4606 12195 1.194547 CGCCGGATGAATGTTTATCGG 59.805 52.381 5.05 0.00 0.00 4.18
4607 12196 1.069227 GCCGGATGAATGTTTATCGGC 60.069 52.381 5.05 8.05 36.56 5.54
4608 12197 2.217750 CCGGATGAATGTTTATCGGCA 58.782 47.619 0.00 0.00 0.00 5.69
4609 12198 2.032030 CCGGATGAATGTTTATCGGCAC 60.032 50.000 0.00 0.00 0.00 5.01
4610 12199 2.872245 CGGATGAATGTTTATCGGCACT 59.128 45.455 0.00 0.00 0.00 4.40
4611 12200 4.055360 CGGATGAATGTTTATCGGCACTA 58.945 43.478 0.00 0.00 0.00 2.74
4612 12201 4.509970 CGGATGAATGTTTATCGGCACTAA 59.490 41.667 0.00 0.00 0.00 2.24
4613 12202 5.179368 CGGATGAATGTTTATCGGCACTAAT 59.821 40.000 0.00 0.00 0.00 1.73
4614 12203 6.293407 CGGATGAATGTTTATCGGCACTAATT 60.293 38.462 0.00 0.00 0.00 1.40
4615 12204 7.425606 GGATGAATGTTTATCGGCACTAATTT 58.574 34.615 0.00 0.00 0.00 1.82
4616 12205 7.920682 GGATGAATGTTTATCGGCACTAATTTT 59.079 33.333 0.00 0.00 0.00 1.82
4617 12206 8.633075 ATGAATGTTTATCGGCACTAATTTTG 57.367 30.769 0.00 0.00 0.00 2.44
4618 12207 7.032580 TGAATGTTTATCGGCACTAATTTTGG 58.967 34.615 0.00 0.00 0.00 3.28
4619 12208 5.968528 TGTTTATCGGCACTAATTTTGGT 57.031 34.783 0.00 0.00 0.00 3.67
4620 12209 5.945155 TGTTTATCGGCACTAATTTTGGTC 58.055 37.500 0.00 0.00 0.00 4.02
4621 12210 5.708230 TGTTTATCGGCACTAATTTTGGTCT 59.292 36.000 0.00 0.00 0.00 3.85
4622 12211 6.207810 TGTTTATCGGCACTAATTTTGGTCTT 59.792 34.615 0.00 0.00 0.00 3.01
4623 12212 4.701956 ATCGGCACTAATTTTGGTCTTG 57.298 40.909 0.00 0.00 0.00 3.02
4624 12213 2.817258 TCGGCACTAATTTTGGTCTTGG 59.183 45.455 0.00 0.00 0.00 3.61
4625 12214 2.094752 CGGCACTAATTTTGGTCTTGGG 60.095 50.000 0.00 0.00 0.00 4.12
4626 12215 2.353704 GGCACTAATTTTGGTCTTGGGC 60.354 50.000 0.00 0.00 0.00 5.36
4627 12216 2.298729 GCACTAATTTTGGTCTTGGGCA 59.701 45.455 0.00 0.00 0.00 5.36
4628 12217 3.614870 GCACTAATTTTGGTCTTGGGCAG 60.615 47.826 0.00 0.00 0.00 4.85
4629 12218 3.826157 CACTAATTTTGGTCTTGGGCAGA 59.174 43.478 0.00 0.00 0.00 4.26
4630 12219 4.280677 CACTAATTTTGGTCTTGGGCAGAA 59.719 41.667 0.00 0.00 31.28 3.02
4631 12220 4.898861 ACTAATTTTGGTCTTGGGCAGAAA 59.101 37.500 0.00 0.00 31.28 2.52
4632 12221 4.769345 AATTTTGGTCTTGGGCAGAAAA 57.231 36.364 0.00 0.00 31.28 2.29
4633 12222 3.817709 TTTTGGTCTTGGGCAGAAAAG 57.182 42.857 0.00 0.00 31.28 2.27
4634 12223 2.452600 TTGGTCTTGGGCAGAAAAGT 57.547 45.000 0.00 0.00 31.28 2.66
4635 12224 2.452600 TGGTCTTGGGCAGAAAAGTT 57.547 45.000 0.00 0.00 31.28 2.66
4636 12225 2.745968 TGGTCTTGGGCAGAAAAGTTT 58.254 42.857 0.00 0.00 31.28 2.66
4637 12226 2.693074 TGGTCTTGGGCAGAAAAGTTTC 59.307 45.455 0.00 0.00 37.45 2.78
4638 12227 2.035961 GGTCTTGGGCAGAAAAGTTTCC 59.964 50.000 0.13 0.00 37.92 3.13
4639 12228 2.035961 GTCTTGGGCAGAAAAGTTTCCC 59.964 50.000 3.60 3.60 37.92 3.97
4640 12229 2.038659 CTTGGGCAGAAAAGTTTCCCA 58.961 47.619 8.39 8.39 37.92 4.37
4641 12230 1.703411 TGGGCAGAAAAGTTTCCCAG 58.297 50.000 8.39 0.00 37.92 4.45
4642 12231 1.063266 TGGGCAGAAAAGTTTCCCAGT 60.063 47.619 8.39 0.00 37.92 4.00
4643 12232 2.175931 TGGGCAGAAAAGTTTCCCAGTA 59.824 45.455 8.39 0.00 37.92 2.74
4644 12233 2.820197 GGGCAGAAAAGTTTCCCAGTAG 59.180 50.000 5.43 0.00 37.92 2.57
4645 12234 3.487372 GGCAGAAAAGTTTCCCAGTAGT 58.513 45.455 0.13 0.00 37.92 2.73
4646 12235 3.889538 GGCAGAAAAGTTTCCCAGTAGTT 59.110 43.478 0.13 0.00 37.92 2.24
4647 12236 4.261614 GGCAGAAAAGTTTCCCAGTAGTTG 60.262 45.833 0.13 0.00 37.92 3.16
4657 12246 1.604378 CAGTAGTTGGAGCCCCAGG 59.396 63.158 0.00 0.00 44.60 4.45
4703 12292 2.126307 CCTCACTGGCTCGTCGTG 60.126 66.667 0.00 0.00 0.00 4.35
4704 12293 2.807045 CTCACTGGCTCGTCGTGC 60.807 66.667 10.73 10.73 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.471702 AAGAAATCTGTTAATCTGTGATGGATT 57.528 29.630 0.00 0.00 37.24 3.01
1 2 8.900781 CAAGAAATCTGTTAATCTGTGATGGAT 58.099 33.333 0.00 0.00 0.00 3.41
2 3 7.884877 ACAAGAAATCTGTTAATCTGTGATGGA 59.115 33.333 0.00 0.00 0.00 3.41
3 4 8.048534 ACAAGAAATCTGTTAATCTGTGATGG 57.951 34.615 0.00 0.00 0.00 3.51
5 6 9.950496 ACTACAAGAAATCTGTTAATCTGTGAT 57.050 29.630 0.00 0.00 0.00 3.06
6 7 9.208022 CACTACAAGAAATCTGTTAATCTGTGA 57.792 33.333 0.00 0.00 0.00 3.58
7 8 7.959651 GCACTACAAGAAATCTGTTAATCTGTG 59.040 37.037 0.00 0.00 0.00 3.66
8 9 7.880195 AGCACTACAAGAAATCTGTTAATCTGT 59.120 33.333 0.00 0.00 0.00 3.41
9 10 8.261492 AGCACTACAAGAAATCTGTTAATCTG 57.739 34.615 0.00 0.00 0.00 2.90
10 11 9.372369 GTAGCACTACAAGAAATCTGTTAATCT 57.628 33.333 2.92 0.00 36.15 2.40
11 12 8.604890 GGTAGCACTACAAGAAATCTGTTAATC 58.395 37.037 9.87 0.00 37.78 1.75
12 13 8.100791 TGGTAGCACTACAAGAAATCTGTTAAT 58.899 33.333 9.87 0.00 37.78 1.40
13 14 7.446769 TGGTAGCACTACAAGAAATCTGTTAA 58.553 34.615 9.87 0.00 37.78 2.01
14 15 6.999950 TGGTAGCACTACAAGAAATCTGTTA 58.000 36.000 9.87 0.00 37.78 2.41
15 16 5.865085 TGGTAGCACTACAAGAAATCTGTT 58.135 37.500 9.87 0.00 37.78 3.16
16 17 5.483685 TGGTAGCACTACAAGAAATCTGT 57.516 39.130 9.87 0.00 37.78 3.41
17 18 6.204688 TGTTTGGTAGCACTACAAGAAATCTG 59.795 38.462 9.87 0.00 37.78 2.90
18 19 6.204882 GTGTTTGGTAGCACTACAAGAAATCT 59.795 38.462 9.87 0.00 37.78 2.40
19 20 6.017440 TGTGTTTGGTAGCACTACAAGAAATC 60.017 38.462 9.87 0.22 37.78 2.17
20 21 5.825679 TGTGTTTGGTAGCACTACAAGAAAT 59.174 36.000 9.87 0.00 37.78 2.17
21 22 5.065474 GTGTGTTTGGTAGCACTACAAGAAA 59.935 40.000 9.87 3.29 37.78 2.52
22 23 4.573201 GTGTGTTTGGTAGCACTACAAGAA 59.427 41.667 9.87 0.00 37.78 2.52
23 24 4.124238 GTGTGTTTGGTAGCACTACAAGA 58.876 43.478 9.87 0.00 37.78 3.02
24 25 3.250040 GGTGTGTTTGGTAGCACTACAAG 59.750 47.826 9.87 0.00 37.78 3.16
25 26 3.207778 GGTGTGTTTGGTAGCACTACAA 58.792 45.455 9.87 0.00 37.78 2.41
26 27 2.485835 GGGTGTGTTTGGTAGCACTACA 60.486 50.000 9.87 0.00 37.78 2.74
27 28 2.148768 GGGTGTGTTTGGTAGCACTAC 58.851 52.381 0.00 0.00 36.63 2.73
28 29 2.051692 AGGGTGTGTTTGGTAGCACTA 58.948 47.619 0.00 0.00 36.63 2.74
29 30 0.843984 AGGGTGTGTTTGGTAGCACT 59.156 50.000 0.00 0.00 36.63 4.40
30 31 2.554370 TAGGGTGTGTTTGGTAGCAC 57.446 50.000 0.00 0.00 36.26 4.40
31 32 3.417101 CAATAGGGTGTGTTTGGTAGCA 58.583 45.455 0.00 0.00 0.00 3.49
32 33 2.752903 CCAATAGGGTGTGTTTGGTAGC 59.247 50.000 0.00 0.00 35.07 3.58
68 69 3.181500 CGAGGTAGATGACATTCACGACA 60.181 47.826 0.00 0.00 0.00 4.35
70 71 2.223502 GCGAGGTAGATGACATTCACGA 60.224 50.000 0.00 0.00 0.00 4.35
75 76 1.689273 GGAGGCGAGGTAGATGACATT 59.311 52.381 0.00 0.00 0.00 2.71
82 83 2.043248 GGGTGGAGGCGAGGTAGA 60.043 66.667 0.00 0.00 0.00 2.59
164 165 6.311445 GTCCAGATAATATGCATCACCGTAAG 59.689 42.308 0.19 0.00 0.00 2.34
180 181 1.275010 TGTTGCGAGCTGTCCAGATAA 59.725 47.619 0.00 0.00 0.00 1.75
201 202 3.406764 GGCTCCTATTCATGTGTCCATC 58.593 50.000 0.00 0.00 0.00 3.51
217 218 1.065709 TGAACCGTATCAAAGGGCTCC 60.066 52.381 0.00 0.00 36.53 4.70
230 231 0.670546 CTCTTGACCGCATGAACCGT 60.671 55.000 0.00 0.00 0.00 4.83
255 256 3.133721 GTCCACTACTGGCAGATCATCTT 59.866 47.826 23.66 0.00 37.49 2.40
266 267 2.568623 AAAGGCTTGTCCACTACTGG 57.431 50.000 0.00 0.00 39.23 4.00
272 273 3.010420 GTCCATCTAAAGGCTTGTCCAC 58.990 50.000 0.00 0.00 37.29 4.02
289 290 0.943835 CTTGATGCACACGTCGTCCA 60.944 55.000 0.00 0.00 34.28 4.02
311 312 4.016444 GGATCAAATGGTTTCCAGCACTA 58.984 43.478 0.00 0.00 36.75 2.74
327 328 3.893753 TCTTTTCCCAACCTGGATCAA 57.106 42.857 0.00 0.00 40.96 2.57
342 343 7.807977 ATGGCGTCAATAGTATTGATCTTTT 57.192 32.000 24.67 10.52 0.00 2.27
357 358 3.355378 AGAATGGAATCAATGGCGTCAA 58.645 40.909 0.00 0.00 0.00 3.18
358 359 2.945008 GAGAATGGAATCAATGGCGTCA 59.055 45.455 0.00 0.00 0.00 4.35
360 361 3.003394 TGAGAATGGAATCAATGGCGT 57.997 42.857 0.00 0.00 0.00 5.68
361 362 5.694231 TTATGAGAATGGAATCAATGGCG 57.306 39.130 0.00 0.00 0.00 5.69
381 382 3.788116 TTACCTCCTCCACCTCCATTA 57.212 47.619 0.00 0.00 0.00 1.90
401 402 8.934023 TTAGAAATAAAGGTGTGGTCTGATTT 57.066 30.769 0.00 0.00 0.00 2.17
404 405 6.271391 TCCTTAGAAATAAAGGTGTGGTCTGA 59.729 38.462 2.04 0.00 43.42 3.27
419 420 6.012421 AGGTTTACTTCAGGCTCCTTAGAAAT 60.012 38.462 0.00 0.00 0.00 2.17
424 425 5.578157 AAAGGTTTACTTCAGGCTCCTTA 57.422 39.130 0.85 0.00 38.85 2.69
449 450 6.835488 AGTTATAAACATACCGGTGACTCCTA 59.165 38.462 19.93 1.82 0.00 2.94
510 511 1.303643 CAAGGACCCCCTCAGTTGC 60.304 63.158 0.00 0.00 43.48 4.17
516 517 1.379044 CACATGCAAGGACCCCCTC 60.379 63.158 0.00 0.00 43.48 4.30
524 525 4.646040 TCCCTTTCATTATCACATGCAAGG 59.354 41.667 5.42 5.42 43.48 3.61
527 528 5.657745 ACAATCCCTTTCATTATCACATGCA 59.342 36.000 0.00 0.00 0.00 3.96
592 593 2.128771 AAATAGGCGCCACAGTGAAT 57.871 45.000 31.54 7.63 0.00 2.57
675 678 6.208832 AACTTTCATCAGTTCACCAATCGGT 61.209 40.000 0.00 0.00 36.26 4.69
686 689 2.951229 ACCCCGAACTTTCATCAGTT 57.049 45.000 0.00 0.00 39.84 3.16
688 691 2.778299 TGAACCCCGAACTTTCATCAG 58.222 47.619 0.00 0.00 0.00 2.90
708 711 3.071892 TCGGTCACAAGGGTTCTAACAAT 59.928 43.478 0.00 0.00 0.00 2.71
742 768 7.878127 TCGGGGATCTTTATTGCTTAATAGAAG 59.122 37.037 0.00 0.00 0.00 2.85
804 835 9.262358 GCTATCGGTTCTTGTTTTCTTATAGAT 57.738 33.333 0.00 0.00 0.00 1.98
805 836 8.475639 AGCTATCGGTTCTTGTTTTCTTATAGA 58.524 33.333 0.00 0.00 0.00 1.98
818 849 6.879458 AGTAACAAATCAAGCTATCGGTTCTT 59.121 34.615 0.00 0.00 0.00 2.52
828 859 7.226720 CCCGTAATATGAGTAACAAATCAAGCT 59.773 37.037 0.00 0.00 0.00 3.74
834 865 7.051623 TCAAGCCCGTAATATGAGTAACAAAT 58.948 34.615 0.00 0.00 0.00 2.32
921 952 1.799933 AAGATCCGAGATTGCCTCCT 58.200 50.000 0.00 0.00 38.71 3.69
958 993 0.325671 AGAAAGGGGATCGAGGCAGA 60.326 55.000 0.00 0.00 0.00 4.26
995 1030 3.089874 TCTGGCCCTCCATTCCGG 61.090 66.667 0.00 0.00 42.51 5.14
1074 1136 1.340248 GTCAGGAGGTTGTCGTCTTCA 59.660 52.381 0.00 0.00 0.00 3.02
1077 1139 1.524863 CCGTCAGGAGGTTGTCGTCT 61.525 60.000 0.00 0.00 41.02 4.18
1785 2589 2.158623 TGGGAGCTGAATTGCCGATAAT 60.159 45.455 0.00 0.00 0.00 1.28
1792 2596 1.503542 CGTGTGGGAGCTGAATTGC 59.496 57.895 0.00 0.00 0.00 3.56
2063 2876 0.108138 GCGCCTGACATCCAAGTAGT 60.108 55.000 0.00 0.00 0.00 2.73
2089 2902 5.834169 TGTCATCTCGTACACTTTACACAA 58.166 37.500 0.00 0.00 0.00 3.33
2161 2974 2.618302 GGACAGTAGGGAAAAAGGGAGC 60.618 54.545 0.00 0.00 0.00 4.70
2167 2980 2.038033 CAGGACGGACAGTAGGGAAAAA 59.962 50.000 0.00 0.00 0.00 1.94
2179 2992 1.949257 CAAACCTTGCAGGACGGAC 59.051 57.895 8.91 0.00 37.67 4.79
2340 4149 7.939039 ACAGAAGTGATTTCAAATTACCTCAGA 59.061 33.333 6.46 0.00 38.31 3.27
2341 4150 8.103948 ACAGAAGTGATTTCAAATTACCTCAG 57.896 34.615 6.46 1.71 38.31 3.35
2371 4204 6.954102 AGTATTGTCAAAAAGGCCTAAGGAAT 59.046 34.615 5.16 1.10 0.00 3.01
2606 4541 2.060284 CCACAACATCATTTGCAACGG 58.940 47.619 0.00 0.00 0.00 4.44
2737 4856 5.653769 CACCAGGGAAGTAAATGTCAATCAT 59.346 40.000 0.00 0.00 38.57 2.45
3213 6325 7.500629 AGAAAATGGGAAGCTAAAATTCCAT 57.499 32.000 7.02 0.00 46.77 3.41
3255 6368 4.315803 TGAGAAGTAGGCTGTACAAAAGC 58.684 43.478 0.00 0.00 40.06 3.51
3299 6713 5.927281 AACCAAGCATTAGCAATCTCATT 57.073 34.783 0.00 0.00 45.49 2.57
3319 6733 2.287970 GGAAACATTCGTGGGGACAAAC 60.288 50.000 0.00 0.00 46.06 2.93
3323 6737 2.027469 ACTAGGAAACATTCGTGGGGAC 60.027 50.000 0.00 0.00 31.40 4.46
3381 6797 3.947626 TCAAGAGCAACAGCGTAAAAAC 58.052 40.909 0.00 0.00 0.00 2.43
3564 6991 6.073447 TCATACCCCAGTCACACATATTTT 57.927 37.500 0.00 0.00 0.00 1.82
3582 7009 7.492352 AGGTTAAATGCCTTCGTATTCATAC 57.508 36.000 0.00 0.00 31.04 2.39
3678 7120 7.602753 AGTCCAACAATCCTTAAATGTTTAGC 58.397 34.615 0.00 0.00 35.22 3.09
3852 7325 7.132863 GCGGCTAAAATTTAAGGATTAGTCAG 58.867 38.462 0.00 0.00 31.18 3.51
3860 7333 4.394920 CAGACTGCGGCTAAAATTTAAGGA 59.605 41.667 0.00 0.00 0.00 3.36
3861 7334 4.156008 ACAGACTGCGGCTAAAATTTAAGG 59.844 41.667 1.25 0.00 0.00 2.69
3862 7335 5.122396 AGACAGACTGCGGCTAAAATTTAAG 59.878 40.000 1.25 0.00 0.00 1.85
3864 7337 4.575885 AGACAGACTGCGGCTAAAATTTA 58.424 39.130 1.25 0.00 0.00 1.40
3865 7338 3.412386 AGACAGACTGCGGCTAAAATTT 58.588 40.909 1.25 0.00 0.00 1.82
3866 7339 3.059352 AGACAGACTGCGGCTAAAATT 57.941 42.857 1.25 0.00 0.00 1.82
3869 7342 3.447586 AGATTAGACAGACTGCGGCTAAA 59.552 43.478 13.63 0.00 0.00 1.85
3870 7343 3.024547 AGATTAGACAGACTGCGGCTAA 58.975 45.455 1.25 8.65 0.00 3.09
3871 7344 2.656002 AGATTAGACAGACTGCGGCTA 58.344 47.619 1.25 0.00 0.00 3.93
3876 7934 4.054671 GCCATGTAGATTAGACAGACTGC 58.945 47.826 1.25 0.00 0.00 4.40
3954 9371 4.565652 GCTTTTGGTTCATCCCTCTCTACA 60.566 45.833 0.00 0.00 34.77 2.74
4014 9431 5.534278 TGATGCATTCACTACCACTCAAAAA 59.466 36.000 0.00 0.00 0.00 1.94
4015 9432 5.069318 TGATGCATTCACTACCACTCAAAA 58.931 37.500 0.00 0.00 0.00 2.44
4016 9433 4.650734 TGATGCATTCACTACCACTCAAA 58.349 39.130 0.00 0.00 0.00 2.69
4017 9434 4.284829 TGATGCATTCACTACCACTCAA 57.715 40.909 0.00 0.00 0.00 3.02
4018 9435 3.979101 TGATGCATTCACTACCACTCA 57.021 42.857 0.00 0.00 0.00 3.41
4019 9436 4.194640 ACATGATGCATTCACTACCACTC 58.805 43.478 0.00 0.00 37.11 3.51
4020 9437 4.226427 ACATGATGCATTCACTACCACT 57.774 40.909 0.00 0.00 37.11 4.00
4021 9438 5.817296 TCTTACATGATGCATTCACTACCAC 59.183 40.000 0.00 0.00 37.11 4.16
4022 9439 5.988287 TCTTACATGATGCATTCACTACCA 58.012 37.500 0.00 0.00 37.11 3.25
4023 9440 6.018425 CACTCTTACATGATGCATTCACTACC 60.018 42.308 0.00 0.00 37.11 3.18
4024 9441 6.018425 CCACTCTTACATGATGCATTCACTAC 60.018 42.308 0.00 0.00 37.11 2.73
4025 9442 6.051074 CCACTCTTACATGATGCATTCACTA 58.949 40.000 0.00 0.00 37.11 2.74
4026 9443 4.880120 CCACTCTTACATGATGCATTCACT 59.120 41.667 0.00 0.00 37.11 3.41
4039 9456 7.165485 ACTTATACACAATTGCCACTCTTACA 58.835 34.615 5.05 0.00 0.00 2.41
4058 9508 5.880332 GTGTCAGCCCATTCAGAAACTTATA 59.120 40.000 0.00 0.00 0.00 0.98
4060 9510 4.072131 GTGTCAGCCCATTCAGAAACTTA 58.928 43.478 0.00 0.00 0.00 2.24
4169 11733 2.728817 GACGGCGAGGTCCATAGG 59.271 66.667 16.62 0.00 0.00 2.57
4170 11734 2.331805 CGACGGCGAGGTCCATAG 59.668 66.667 16.62 0.00 40.82 2.23
4171 11735 2.438975 ACGACGGCGAGGTCCATA 60.439 61.111 22.49 0.00 41.64 2.74
4190 11754 0.956633 AAGCTCTACAACGGTGTCGA 59.043 50.000 10.72 8.90 39.30 4.20
4195 11759 0.038526 CCGACAAGCTCTACAACGGT 60.039 55.000 0.00 0.00 35.21 4.83
4232 11796 1.569493 CCGCAACTTGTCAGTTCGG 59.431 57.895 9.84 9.84 41.69 4.30
4242 11806 1.005037 TCGAGACATGCCGCAACTT 60.005 52.632 0.00 0.00 0.00 2.66
4244 11808 2.456119 CCTCGAGACATGCCGCAAC 61.456 63.158 15.71 0.00 0.00 4.17
4246 11810 4.819761 GCCTCGAGACATGCCGCA 62.820 66.667 15.71 0.00 0.00 5.69
4247 11811 4.819761 TGCCTCGAGACATGCCGC 62.820 66.667 15.71 7.35 0.00 6.53
4248 11812 1.953138 GATGCCTCGAGACATGCCG 60.953 63.158 19.57 0.00 0.00 5.69
4250 11814 1.596477 GGGATGCCTCGAGACATGC 60.596 63.158 22.08 22.08 34.22 4.06
4251 11815 1.300465 CGGGATGCCTCGAGACATG 60.300 63.158 19.57 0.91 0.00 3.21
4252 11816 1.330655 AACGGGATGCCTCGAGACAT 61.331 55.000 14.55 14.55 0.00 3.06
4253 11817 0.681887 TAACGGGATGCCTCGAGACA 60.682 55.000 15.71 9.52 0.00 3.41
4254 11818 0.674534 ATAACGGGATGCCTCGAGAC 59.325 55.000 15.71 1.72 0.00 3.36
4255 11819 2.281539 TATAACGGGATGCCTCGAGA 57.718 50.000 15.71 0.00 0.00 4.04
4257 11821 1.548719 CCATATAACGGGATGCCTCGA 59.451 52.381 0.28 0.00 0.00 4.04
4258 11822 2.010145 CCATATAACGGGATGCCTCG 57.990 55.000 0.28 0.00 0.00 4.63
4268 11832 2.137523 GCCCGTACAACCCATATAACG 58.862 52.381 0.00 0.00 0.00 3.18
4269 11833 2.158784 TGGCCCGTACAACCCATATAAC 60.159 50.000 0.00 0.00 0.00 1.89
4270 11834 2.125233 TGGCCCGTACAACCCATATAA 58.875 47.619 0.00 0.00 0.00 0.98
4271 11835 1.803866 TGGCCCGTACAACCCATATA 58.196 50.000 0.00 0.00 0.00 0.86
4272 11836 1.145571 ATGGCCCGTACAACCCATAT 58.854 50.000 0.00 0.00 36.36 1.78
4273 11837 1.695242 CTATGGCCCGTACAACCCATA 59.305 52.381 0.00 12.27 38.85 2.74
4274 11838 0.472471 CTATGGCCCGTACAACCCAT 59.528 55.000 0.00 11.48 40.87 4.00
4275 11839 1.628238 CCTATGGCCCGTACAACCCA 61.628 60.000 0.00 0.00 0.00 4.51
4276 11840 1.147600 CCTATGGCCCGTACAACCC 59.852 63.158 0.00 0.00 0.00 4.11
4277 11841 0.763035 ATCCTATGGCCCGTACAACC 59.237 55.000 0.00 0.00 0.00 3.77
4278 11842 1.692519 AGATCCTATGGCCCGTACAAC 59.307 52.381 0.00 0.00 0.00 3.32
4279 11843 1.968493 GAGATCCTATGGCCCGTACAA 59.032 52.381 0.00 0.00 0.00 2.41
4280 11844 1.133294 TGAGATCCTATGGCCCGTACA 60.133 52.381 0.00 0.00 0.00 2.90
4281 11845 1.629043 TGAGATCCTATGGCCCGTAC 58.371 55.000 0.00 0.00 0.00 3.67
4282 11846 2.225267 TGATGAGATCCTATGGCCCGTA 60.225 50.000 0.00 0.00 0.00 4.02
4283 11847 1.270907 GATGAGATCCTATGGCCCGT 58.729 55.000 0.00 0.00 0.00 5.28
4312 11876 0.036010 CATCCATGATCCTACGGCCC 60.036 60.000 0.00 0.00 0.00 5.80
4325 11889 1.458777 CCCATGGCCTTGCATCCAT 60.459 57.895 13.15 9.16 43.45 3.41
4371 11935 3.479489 AGCATCAATGGTTGCATCGATA 58.521 40.909 5.94 0.00 41.24 2.92
4377 11941 5.192176 TGTTCTATAGCATCAATGGTTGCA 58.808 37.500 5.94 0.00 41.24 4.08
4403 11967 0.728129 TCGTACGCTTCTGCTGTTCG 60.728 55.000 11.24 0.00 37.59 3.95
4407 11971 1.756375 GCCATCGTACGCTTCTGCTG 61.756 60.000 11.24 0.00 36.97 4.41
4408 11972 1.519455 GCCATCGTACGCTTCTGCT 60.519 57.895 11.24 0.00 36.97 4.24
4410 11974 0.647410 CTTGCCATCGTACGCTTCTG 59.353 55.000 11.24 5.28 0.00 3.02
4411 11975 0.530744 TCTTGCCATCGTACGCTTCT 59.469 50.000 11.24 0.00 0.00 2.85
4413 11977 0.530744 TCTCTTGCCATCGTACGCTT 59.469 50.000 11.24 0.00 0.00 4.68
4414 11978 0.179134 GTCTCTTGCCATCGTACGCT 60.179 55.000 11.24 0.00 0.00 5.07
4415 11979 0.179134 AGTCTCTTGCCATCGTACGC 60.179 55.000 11.24 0.00 0.00 4.42
4416 11980 1.550065 CAGTCTCTTGCCATCGTACG 58.450 55.000 9.53 9.53 0.00 3.67
4425 12011 4.574013 CCACTTCATAATCCAGTCTCTTGC 59.426 45.833 0.00 0.00 0.00 4.01
4428 12014 5.026121 TCACCACTTCATAATCCAGTCTCT 58.974 41.667 0.00 0.00 0.00 3.10
4436 12022 6.431234 ACCAACTTCTTCACCACTTCATAATC 59.569 38.462 0.00 0.00 0.00 1.75
4457 12043 2.335092 TTTAACGGACGGGCCACCAA 62.335 55.000 4.39 1.75 36.13 3.67
4466 12052 3.797256 CCAGCTCTATCTTTTAACGGACG 59.203 47.826 0.00 0.00 0.00 4.79
4467 12053 4.756502 ACCAGCTCTATCTTTTAACGGAC 58.243 43.478 0.00 0.00 0.00 4.79
4473 12059 7.633789 AGATTTCCAACCAGCTCTATCTTTTA 58.366 34.615 0.00 0.00 0.00 1.52
4486 12072 1.271163 GGTCCACGAGATTTCCAACCA 60.271 52.381 0.00 0.00 0.00 3.67
4487 12073 1.450025 GGTCCACGAGATTTCCAACC 58.550 55.000 0.00 0.00 0.00 3.77
4488 12074 1.450025 GGGTCCACGAGATTTCCAAC 58.550 55.000 0.00 0.00 0.00 3.77
4491 12080 0.326927 TTGGGGTCCACGAGATTTCC 59.673 55.000 0.00 0.00 30.78 3.13
4496 12085 0.471211 AGTTCTTGGGGTCCACGAGA 60.471 55.000 7.02 7.02 33.41 4.04
4500 12089 4.466827 TCTTTTTAGTTCTTGGGGTCCAC 58.533 43.478 0.00 0.00 30.78 4.02
4517 12106 2.434336 GCCAACCCCTTTGTCTTCTTTT 59.566 45.455 0.00 0.00 32.71 2.27
4518 12107 2.039418 GCCAACCCCTTTGTCTTCTTT 58.961 47.619 0.00 0.00 32.71 2.52
4537 12126 3.333804 GGCTGGAGATGCTCTAATAAGC 58.666 50.000 0.00 0.00 42.82 3.09
4546 12135 1.376424 CACAACGGCTGGAGATGCT 60.376 57.895 0.00 0.00 0.00 3.79
4547 12136 3.044059 GCACAACGGCTGGAGATGC 62.044 63.158 0.00 0.00 0.00 3.91
4548 12137 2.401766 GGCACAACGGCTGGAGATG 61.402 63.158 0.00 0.00 37.17 2.90
4549 12138 2.045926 GGCACAACGGCTGGAGAT 60.046 61.111 0.00 0.00 37.17 2.75
4557 12146 3.783362 TTGTGGGGAGGCACAACGG 62.783 63.158 0.00 0.00 36.52 4.44
4558 12147 2.203280 TTGTGGGGAGGCACAACG 60.203 61.111 0.00 0.00 36.52 4.10
4559 12148 2.564721 GCTTGTGGGGAGGCACAAC 61.565 63.158 0.00 0.00 36.52 3.32
4560 12149 2.203480 GCTTGTGGGGAGGCACAA 60.203 61.111 0.00 0.00 38.77 3.33
4561 12150 4.641645 CGCTTGTGGGGAGGCACA 62.642 66.667 0.00 0.00 0.00 4.57
4562 12151 3.628646 ATCGCTTGTGGGGAGGCAC 62.629 63.158 0.00 0.00 40.21 5.01
4563 12152 2.424842 AAATCGCTTGTGGGGAGGCA 62.425 55.000 0.00 0.00 40.21 4.75
4564 12153 1.250840 AAAATCGCTTGTGGGGAGGC 61.251 55.000 0.00 0.00 40.21 4.70
4565 12154 1.067635 CAAAAATCGCTTGTGGGGAGG 60.068 52.381 0.00 0.00 40.21 4.30
4566 12155 1.669795 GCAAAAATCGCTTGTGGGGAG 60.670 52.381 0.00 0.00 40.21 4.30
4567 12156 0.316841 GCAAAAATCGCTTGTGGGGA 59.683 50.000 0.00 0.00 41.11 4.81
4568 12157 1.008361 CGCAAAAATCGCTTGTGGGG 61.008 55.000 0.00 0.00 31.96 4.96
4569 12158 2.433637 CGCAAAAATCGCTTGTGGG 58.566 52.632 0.00 0.00 31.96 4.61
4577 12166 0.179176 TTCATCCGGCGCAAAAATCG 60.179 50.000 10.83 1.30 0.00 3.34
4578 12167 1.854126 CATTCATCCGGCGCAAAAATC 59.146 47.619 10.83 0.00 0.00 2.17
4579 12168 1.204467 ACATTCATCCGGCGCAAAAAT 59.796 42.857 10.83 0.00 0.00 1.82
4580 12169 0.600557 ACATTCATCCGGCGCAAAAA 59.399 45.000 10.83 0.00 0.00 1.94
4581 12170 0.600557 AACATTCATCCGGCGCAAAA 59.399 45.000 10.83 0.00 0.00 2.44
4582 12171 0.600557 AAACATTCATCCGGCGCAAA 59.399 45.000 10.83 0.00 0.00 3.68
4583 12172 1.454201 TAAACATTCATCCGGCGCAA 58.546 45.000 10.83 0.00 0.00 4.85
4584 12173 1.601903 GATAAACATTCATCCGGCGCA 59.398 47.619 10.83 0.00 0.00 6.09
4585 12174 1.398451 CGATAAACATTCATCCGGCGC 60.398 52.381 0.00 0.00 0.00 6.53
4586 12175 1.194547 CCGATAAACATTCATCCGGCG 59.805 52.381 0.00 0.00 0.00 6.46
4587 12176 1.069227 GCCGATAAACATTCATCCGGC 60.069 52.381 0.00 0.00 35.39 6.13
4588 12177 2.032030 GTGCCGATAAACATTCATCCGG 60.032 50.000 0.00 0.00 0.00 5.14
4589 12178 2.872245 AGTGCCGATAAACATTCATCCG 59.128 45.455 0.00 0.00 0.00 4.18
4590 12179 6.560253 ATTAGTGCCGATAAACATTCATCC 57.440 37.500 0.00 0.00 0.00 3.51
4591 12180 8.745837 CAAAATTAGTGCCGATAAACATTCATC 58.254 33.333 0.00 0.00 0.00 2.92
4592 12181 7.706179 CCAAAATTAGTGCCGATAAACATTCAT 59.294 33.333 0.00 0.00 0.00 2.57
4593 12182 7.032580 CCAAAATTAGTGCCGATAAACATTCA 58.967 34.615 0.00 0.00 0.00 2.57
4594 12183 7.033185 ACCAAAATTAGTGCCGATAAACATTC 58.967 34.615 0.00 0.00 0.00 2.67
4595 12184 6.930731 ACCAAAATTAGTGCCGATAAACATT 58.069 32.000 0.00 0.00 0.00 2.71
4596 12185 6.377146 AGACCAAAATTAGTGCCGATAAACAT 59.623 34.615 0.00 0.00 0.00 2.71
4597 12186 5.708230 AGACCAAAATTAGTGCCGATAAACA 59.292 36.000 0.00 0.00 0.00 2.83
4598 12187 6.190954 AGACCAAAATTAGTGCCGATAAAC 57.809 37.500 0.00 0.00 0.00 2.01
4599 12188 6.349777 CCAAGACCAAAATTAGTGCCGATAAA 60.350 38.462 0.00 0.00 0.00 1.40
4600 12189 5.124776 CCAAGACCAAAATTAGTGCCGATAA 59.875 40.000 0.00 0.00 0.00 1.75
4601 12190 4.638421 CCAAGACCAAAATTAGTGCCGATA 59.362 41.667 0.00 0.00 0.00 2.92
4602 12191 3.443681 CCAAGACCAAAATTAGTGCCGAT 59.556 43.478 0.00 0.00 0.00 4.18
4603 12192 2.817258 CCAAGACCAAAATTAGTGCCGA 59.183 45.455 0.00 0.00 0.00 5.54
4604 12193 2.094752 CCCAAGACCAAAATTAGTGCCG 60.095 50.000 0.00 0.00 0.00 5.69
4605 12194 2.353704 GCCCAAGACCAAAATTAGTGCC 60.354 50.000 0.00 0.00 0.00 5.01
4606 12195 2.298729 TGCCCAAGACCAAAATTAGTGC 59.701 45.455 0.00 0.00 0.00 4.40
4607 12196 3.826157 TCTGCCCAAGACCAAAATTAGTG 59.174 43.478 0.00 0.00 0.00 2.74
4608 12197 4.112634 TCTGCCCAAGACCAAAATTAGT 57.887 40.909 0.00 0.00 0.00 2.24
4609 12198 5.467035 TTTCTGCCCAAGACCAAAATTAG 57.533 39.130 0.00 0.00 33.46 1.73
4610 12199 5.365314 ACTTTTCTGCCCAAGACCAAAATTA 59.635 36.000 0.00 0.00 33.46 1.40
4611 12200 4.164030 ACTTTTCTGCCCAAGACCAAAATT 59.836 37.500 0.00 0.00 33.46 1.82
4612 12201 3.711190 ACTTTTCTGCCCAAGACCAAAAT 59.289 39.130 0.00 0.00 33.46 1.82
4613 12202 3.103742 ACTTTTCTGCCCAAGACCAAAA 58.896 40.909 0.00 0.00 33.46 2.44
4614 12203 2.745968 ACTTTTCTGCCCAAGACCAAA 58.254 42.857 0.00 0.00 33.46 3.28
4615 12204 2.452600 ACTTTTCTGCCCAAGACCAA 57.547 45.000 0.00 0.00 33.46 3.67
4616 12205 2.452600 AACTTTTCTGCCCAAGACCA 57.547 45.000 0.00 0.00 33.46 4.02
4617 12206 2.035961 GGAAACTTTTCTGCCCAAGACC 59.964 50.000 1.88 0.00 37.35 3.85
4618 12207 2.035961 GGGAAACTTTTCTGCCCAAGAC 59.964 50.000 0.00 0.00 37.35 3.01
4619 12208 2.316108 GGGAAACTTTTCTGCCCAAGA 58.684 47.619 0.00 0.00 37.35 3.02
4620 12209 2.036346 CTGGGAAACTTTTCTGCCCAAG 59.964 50.000 0.00 0.00 37.35 3.61
4621 12210 2.038659 CTGGGAAACTTTTCTGCCCAA 58.961 47.619 0.00 0.00 37.35 4.12
4622 12211 1.063266 ACTGGGAAACTTTTCTGCCCA 60.063 47.619 0.00 0.00 37.35 5.36
4623 12212 1.704641 ACTGGGAAACTTTTCTGCCC 58.295 50.000 1.88 0.00 37.35 5.36
4624 12213 3.487372 ACTACTGGGAAACTTTTCTGCC 58.513 45.455 1.88 0.00 37.35 4.85
4625 12214 4.261614 CCAACTACTGGGAAACTTTTCTGC 60.262 45.833 1.88 0.00 42.17 4.26
4626 12215 5.130350 TCCAACTACTGGGAAACTTTTCTG 58.870 41.667 1.88 0.00 46.44 3.02
4627 12216 5.377478 CTCCAACTACTGGGAAACTTTTCT 58.623 41.667 1.88 0.00 46.44 2.52
4628 12217 4.023107 GCTCCAACTACTGGGAAACTTTTC 60.023 45.833 0.00 0.00 46.44 2.29
4629 12218 3.889538 GCTCCAACTACTGGGAAACTTTT 59.110 43.478 0.00 0.00 46.44 2.27
4630 12219 3.487372 GCTCCAACTACTGGGAAACTTT 58.513 45.455 0.00 0.00 46.44 2.66
4631 12220 2.224793 GGCTCCAACTACTGGGAAACTT 60.225 50.000 0.00 0.00 46.44 2.66
4632 12221 1.351350 GGCTCCAACTACTGGGAAACT 59.649 52.381 0.00 0.00 46.44 2.66
4633 12222 1.613520 GGGCTCCAACTACTGGGAAAC 60.614 57.143 0.00 0.00 46.44 2.78
4634 12223 0.696501 GGGCTCCAACTACTGGGAAA 59.303 55.000 0.00 0.00 46.44 3.13
4635 12224 1.205460 GGGGCTCCAACTACTGGGAA 61.205 60.000 0.00 0.00 46.44 3.97
4636 12225 1.615424 GGGGCTCCAACTACTGGGA 60.615 63.158 0.00 0.00 46.44 4.37
4637 12226 1.915078 CTGGGGCTCCAACTACTGGG 61.915 65.000 6.84 0.00 46.44 4.45
4639 12228 1.604378 CCTGGGGCTCCAACTACTG 59.396 63.158 6.84 0.00 43.51 2.74
4640 12229 2.301738 GCCTGGGGCTCCAACTACT 61.302 63.158 6.84 0.00 46.69 2.57
4641 12230 2.272471 GCCTGGGGCTCCAACTAC 59.728 66.667 6.84 0.00 46.69 2.73
4686 12275 2.126307 CACGACGAGCCAGTGAGG 60.126 66.667 0.00 0.00 38.06 3.86
4687 12276 2.807045 GCACGACGAGCCAGTGAG 60.807 66.667 5.94 0.00 38.06 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.