Multiple sequence alignment - TraesCS3D01G447200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G447200 chr3D 100.000 2220 0 0 1 2220 555756564 555758783 0.000000e+00 4100
1 TraesCS3D01G447200 chr3D 79.560 318 40 19 1350 1652 408127636 408127329 1.040000e-48 204
2 TraesCS3D01G447200 chr3B 96.948 688 17 3 618 1302 201515591 201516277 0.000000e+00 1151
3 TraesCS3D01G447200 chrUn 97.305 668 15 2 618 1282 445812152 445811485 0.000000e+00 1131
4 TraesCS3D01G447200 chrUn 96.413 669 18 6 638 1302 30306420 30305754 0.000000e+00 1098
5 TraesCS3D01G447200 chrUn 87.500 208 19 5 1458 1659 954885 955091 1.330000e-57 233
6 TraesCS3D01G447200 chrUn 95.652 46 2 0 1296 1341 327662170 327662215 8.500000e-10 75
7 TraesCS3D01G447200 chrUn 95.652 46 2 0 1296 1341 371049595 371049550 8.500000e-10 75
8 TraesCS3D01G447200 chr5D 96.081 689 21 6 618 1302 560873379 560874065 0.000000e+00 1118
9 TraesCS3D01G447200 chr5D 95.652 690 23 6 618 1302 6200372 6199685 0.000000e+00 1101
10 TraesCS3D01G447200 chr5D 95.646 689 24 6 618 1302 329163088 329163774 0.000000e+00 1101
11 TraesCS3D01G447200 chr5D 98.052 616 11 1 2 617 418730399 418729785 0.000000e+00 1070
12 TraesCS3D01G447200 chr5D 97.890 616 12 1 2 617 97707624 97708238 0.000000e+00 1064
13 TraesCS3D01G447200 chr5D 95.652 46 2 0 1296 1341 432291570 432291615 8.500000e-10 75
14 TraesCS3D01G447200 chr1D 95.791 689 23 6 618 1302 254498909 254499595 0.000000e+00 1107
15 TraesCS3D01G447200 chr7D 98.706 618 8 0 1 618 205088159 205087542 0.000000e+00 1098
16 TraesCS3D01G447200 chr7D 98.217 617 10 1 3 618 244025437 244026053 0.000000e+00 1077
17 TraesCS3D01G447200 chr7D 98.058 618 12 0 1 618 419557502 419558119 0.000000e+00 1075
18 TraesCS3D01G447200 chr7D 97.893 617 13 0 1 617 203106411 203105795 0.000000e+00 1068
19 TraesCS3D01G447200 chr7D 95.652 46 2 0 1296 1341 530834358 530834313 8.500000e-10 75
20 TraesCS3D01G447200 chr2D 98.541 617 8 1 1 617 454387822 454387207 0.000000e+00 1088
21 TraesCS3D01G447200 chr2D 97.735 618 14 0 1 618 454397286 454396669 0.000000e+00 1064
22 TraesCS3D01G447200 chr4D 94.913 688 30 5 618 1302 19917405 19918090 0.000000e+00 1072
23 TraesCS3D01G447200 chr4D 97.735 618 12 2 1 617 17889846 17889230 0.000000e+00 1062
24 TraesCS3D01G447200 chr4D 86.290 248 23 9 1350 1586 327385094 327385341 2.190000e-65 259
25 TraesCS3D01G447200 chr4D 95.652 46 2 0 1296 1341 245649830 245649785 8.500000e-10 75
26 TraesCS3D01G447200 chr1A 94.767 688 29 6 618 1302 168449656 168448973 0.000000e+00 1064
27 TraesCS3D01G447200 chr3A 92.692 520 32 5 1350 1867 692700156 692700671 0.000000e+00 745
28 TraesCS3D01G447200 chr3A 81.973 294 36 15 1385 1663 663683741 663684032 1.330000e-57 233
29 TraesCS3D01G447200 chr1B 81.040 327 41 16 1350 1661 659582862 659582542 7.920000e-60 241
30 TraesCS3D01G447200 chr1B 95.652 46 2 0 1296 1341 633727717 633727762 8.500000e-10 75
31 TraesCS3D01G447200 chr4A 83.936 249 28 11 1350 1586 143695891 143695643 6.170000e-56 228
32 TraesCS3D01G447200 chr4A 80.351 285 40 11 1392 1664 39270431 39270711 3.740000e-48 202
33 TraesCS3D01G447200 chr4A 95.652 46 2 0 1296 1341 490864249 490864204 8.500000e-10 75
34 TraesCS3D01G447200 chr4B 81.221 213 32 6 1459 1664 521712919 521712708 4.900000e-37 165
35 TraesCS3D01G447200 chr6B 80.952 189 26 9 1350 1530 678599913 678599727 8.260000e-30 141
36 TraesCS3D01G447200 chr5A 77.617 277 32 14 1352 1619 560805654 560805909 8.260000e-30 141
37 TraesCS3D01G447200 chr7A 95.652 46 2 0 1296 1341 650018960 650019005 8.500000e-10 75
38 TraesCS3D01G447200 chr5B 95.652 46 2 0 1296 1341 429037830 429037785 8.500000e-10 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G447200 chr3D 555756564 555758783 2219 False 4100 4100 100.000 1 2220 1 chr3D.!!$F1 2219
1 TraesCS3D01G447200 chr3B 201515591 201516277 686 False 1151 1151 96.948 618 1302 1 chr3B.!!$F1 684
2 TraesCS3D01G447200 chrUn 445811485 445812152 667 True 1131 1131 97.305 618 1282 1 chrUn.!!$R3 664
3 TraesCS3D01G447200 chrUn 30305754 30306420 666 True 1098 1098 96.413 638 1302 1 chrUn.!!$R1 664
4 TraesCS3D01G447200 chr5D 560873379 560874065 686 False 1118 1118 96.081 618 1302 1 chr5D.!!$F4 684
5 TraesCS3D01G447200 chr5D 6199685 6200372 687 True 1101 1101 95.652 618 1302 1 chr5D.!!$R1 684
6 TraesCS3D01G447200 chr5D 329163088 329163774 686 False 1101 1101 95.646 618 1302 1 chr5D.!!$F2 684
7 TraesCS3D01G447200 chr5D 418729785 418730399 614 True 1070 1070 98.052 2 617 1 chr5D.!!$R2 615
8 TraesCS3D01G447200 chr5D 97707624 97708238 614 False 1064 1064 97.890 2 617 1 chr5D.!!$F1 615
9 TraesCS3D01G447200 chr1D 254498909 254499595 686 False 1107 1107 95.791 618 1302 1 chr1D.!!$F1 684
10 TraesCS3D01G447200 chr7D 205087542 205088159 617 True 1098 1098 98.706 1 618 1 chr7D.!!$R2 617
11 TraesCS3D01G447200 chr7D 244025437 244026053 616 False 1077 1077 98.217 3 618 1 chr7D.!!$F1 615
12 TraesCS3D01G447200 chr7D 419557502 419558119 617 False 1075 1075 98.058 1 618 1 chr7D.!!$F2 617
13 TraesCS3D01G447200 chr7D 203105795 203106411 616 True 1068 1068 97.893 1 617 1 chr7D.!!$R1 616
14 TraesCS3D01G447200 chr2D 454387207 454387822 615 True 1088 1088 98.541 1 617 1 chr2D.!!$R1 616
15 TraesCS3D01G447200 chr2D 454396669 454397286 617 True 1064 1064 97.735 1 618 1 chr2D.!!$R2 617
16 TraesCS3D01G447200 chr4D 19917405 19918090 685 False 1072 1072 94.913 618 1302 1 chr4D.!!$F1 684
17 TraesCS3D01G447200 chr4D 17889230 17889846 616 True 1062 1062 97.735 1 617 1 chr4D.!!$R1 616
18 TraesCS3D01G447200 chr1A 168448973 168449656 683 True 1064 1064 94.767 618 1302 1 chr1A.!!$R1 684
19 TraesCS3D01G447200 chr3A 692700156 692700671 515 False 745 745 92.692 1350 1867 1 chr3A.!!$F2 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 3.015145 GCTGGGAGTTGGGGGCTA 61.015 66.667 0.0 0.0 0.0 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 1866 0.03582 TTTGGTCCATAGACGGCACC 60.036 55.0 0.0 0.0 44.54 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 3.015145 GCTGGGAGTTGGGGGCTA 61.015 66.667 0.00 0.00 0.00 3.93
227 228 3.909732 AGAAACCACCATTTCTGTCCAA 58.090 40.909 0.09 0.00 45.22 3.53
603 607 3.511540 AGGCAAATAAGAGAGGGCAAAAC 59.488 43.478 0.00 0.00 0.00 2.43
636 640 7.280428 TGTCACAATACGTTCCTTTTAGTTTCA 59.720 33.333 0.00 0.00 0.00 2.69
795 802 4.202020 CCGTGTTCTTCGAATGGATCTCTA 60.202 45.833 0.00 0.00 0.00 2.43
893 900 4.705337 TGGCGACTAAAGTTGTTGTTTT 57.295 36.364 0.00 0.00 0.00 2.43
1049 1056 4.320870 TCTAAACCTAGGCCAAAACGAAG 58.679 43.478 9.30 0.00 0.00 3.79
1090 1097 7.343357 ACTGAAACCCTTGAATTCGGAATATA 58.657 34.615 3.22 0.00 34.34 0.86
1127 1136 3.021695 GTTGGGGGACTACCTTTTATGC 58.978 50.000 0.00 0.00 40.03 3.14
1132 1141 2.356432 GGGACTACCTTTTATGCGGGTT 60.356 50.000 0.00 0.00 34.86 4.11
1203 1212 3.731652 TTCTTCCGTTTTACTGGACGA 57.268 42.857 0.00 0.00 41.53 4.20
1327 1336 9.628500 AAGGATATACAAACAAGAACTAATCCC 57.372 33.333 0.00 0.00 31.50 3.85
1328 1337 8.778059 AGGATATACAAACAAGAACTAATCCCA 58.222 33.333 0.00 0.00 31.50 4.37
1329 1338 9.057089 GGATATACAAACAAGAACTAATCCCAG 57.943 37.037 0.00 0.00 0.00 4.45
1330 1339 6.759497 ATACAAACAAGAACTAATCCCAGC 57.241 37.500 0.00 0.00 0.00 4.85
1331 1340 3.502211 ACAAACAAGAACTAATCCCAGCG 59.498 43.478 0.00 0.00 0.00 5.18
1332 1341 3.695830 AACAAGAACTAATCCCAGCGA 57.304 42.857 0.00 0.00 0.00 4.93
1333 1342 3.695830 ACAAGAACTAATCCCAGCGAA 57.304 42.857 0.00 0.00 0.00 4.70
1334 1343 4.015872 ACAAGAACTAATCCCAGCGAAA 57.984 40.909 0.00 0.00 0.00 3.46
1335 1344 4.394729 ACAAGAACTAATCCCAGCGAAAA 58.605 39.130 0.00 0.00 0.00 2.29
1336 1345 4.215613 ACAAGAACTAATCCCAGCGAAAAC 59.784 41.667 0.00 0.00 0.00 2.43
1337 1346 3.000727 AGAACTAATCCCAGCGAAAACG 58.999 45.455 0.00 0.00 0.00 3.60
1338 1347 1.084289 ACTAATCCCAGCGAAAACGC 58.916 50.000 6.50 6.50 0.00 4.84
1339 1348 1.083489 CTAATCCCAGCGAAAACGCA 58.917 50.000 16.32 0.00 37.35 5.24
1340 1349 1.062587 CTAATCCCAGCGAAAACGCAG 59.937 52.381 16.32 8.53 37.35 5.18
1342 1351 1.298859 ATCCCAGCGAAAACGCAGTC 61.299 55.000 16.32 0.00 45.00 3.51
1343 1352 2.250939 CCCAGCGAAAACGCAGTCA 61.251 57.895 16.32 0.00 45.00 3.41
1344 1353 1.205064 CCAGCGAAAACGCAGTCAG 59.795 57.895 16.32 1.78 45.00 3.51
1345 1354 1.205064 CAGCGAAAACGCAGTCAGG 59.795 57.895 16.32 0.00 45.00 3.86
1346 1355 2.127232 GCGAAAACGCAGTCAGGC 60.127 61.111 9.66 0.00 45.00 4.85
1347 1356 2.607892 GCGAAAACGCAGTCAGGCT 61.608 57.895 9.66 0.00 45.00 4.58
1348 1357 1.289109 GCGAAAACGCAGTCAGGCTA 61.289 55.000 9.66 0.00 45.00 3.93
1360 1369 5.545588 GCAGTCAGGCTAATCATAATGAGA 58.454 41.667 0.00 0.00 0.00 3.27
1405 1414 4.275936 ACAAGTGTTGTTGGATAAGCAGTC 59.724 41.667 0.00 0.00 42.22 3.51
1423 1432 4.878397 GCAGTCAGGCTAATCACATAAACT 59.122 41.667 0.00 0.00 0.00 2.66
1452 1461 6.459710 GCACTAAATGGGCCAGAAAATACTAC 60.460 42.308 13.78 0.00 39.71 2.73
1454 1463 7.122055 CACTAAATGGGCCAGAAAATACTACAA 59.878 37.037 13.78 0.00 0.00 2.41
1464 1473 7.753580 GCCAGAAAATACTACAACAACCATTAC 59.246 37.037 0.00 0.00 0.00 1.89
1475 1484 2.031508 ACAACCATTACGCTTTGAACCG 60.032 45.455 0.00 0.00 0.00 4.44
1582 1591 7.010460 CAGATTTCAAAACTGAAACTGAAACCC 59.990 37.037 16.58 0.00 39.78 4.11
1606 1615 7.254137 CCAAACATGGGAAAACGAAAAATTTT 58.746 30.769 0.00 0.00 31.96 1.82
1617 1626 8.873215 AAAACGAAAAATTTTGGTTTGGTTTT 57.127 23.077 24.67 19.12 44.07 2.43
1651 1661 6.904543 CGATTTTTGGCTTTTTGTTCGATTTT 59.095 30.769 0.00 0.00 0.00 1.82
1658 1668 4.781883 GCTTTTTGTTCGATTTTGCACACC 60.782 41.667 0.00 0.00 0.00 4.16
1667 1677 0.324738 TTTTGCACACCCTGACCCAA 60.325 50.000 0.00 0.00 0.00 4.12
1674 1684 1.528309 ACCCTGACCCAAAAGCGTG 60.528 57.895 0.00 0.00 0.00 5.34
1680 1690 1.336440 TGACCCAAAAGCGTGTCAATG 59.664 47.619 0.00 0.00 34.98 2.82
1684 1694 2.415893 CCCAAAAGCGTGTCAATGATCC 60.416 50.000 0.00 0.00 0.00 3.36
1710 1720 0.031585 GTACATATGGTGCGAGCCGA 59.968 55.000 7.80 0.00 0.00 5.54
1778 1788 2.584236 TCCTAGACCGATAACTGAGCC 58.416 52.381 0.00 0.00 0.00 4.70
1789 1799 4.504461 CGATAACTGAGCCATACTTGTGTC 59.496 45.833 0.00 0.00 0.00 3.67
1849 1859 3.623703 AGGCATTGCATGTATCTTCACA 58.376 40.909 11.39 0.00 0.00 3.58
1860 1870 0.682209 ATCTTCACATGCCAGGGTGC 60.682 55.000 0.00 0.00 35.04 5.01
1862 1872 4.720902 TCACATGCCAGGGTGCCG 62.721 66.667 0.00 0.00 35.04 5.69
1867 1877 2.072487 ATGCCAGGGTGCCGTCTAT 61.072 57.895 0.00 0.00 0.00 1.98
1868 1878 2.203070 GCCAGGGTGCCGTCTATG 60.203 66.667 0.00 0.00 0.00 2.23
1869 1879 2.505982 CCAGGGTGCCGTCTATGG 59.494 66.667 0.00 0.00 0.00 2.74
1870 1880 2.063979 CCAGGGTGCCGTCTATGGA 61.064 63.158 0.00 0.00 0.00 3.41
1871 1881 1.144057 CAGGGTGCCGTCTATGGAC 59.856 63.158 0.00 0.00 38.97 4.02
1872 1882 2.064581 AGGGTGCCGTCTATGGACC 61.065 63.158 3.33 0.00 39.15 4.46
1873 1883 2.363975 GGGTGCCGTCTATGGACCA 61.364 63.158 3.33 0.00 39.15 4.02
1874 1884 1.600107 GGTGCCGTCTATGGACCAA 59.400 57.895 0.00 0.00 39.15 3.67
1875 1885 0.035820 GGTGCCGTCTATGGACCAAA 60.036 55.000 0.00 0.00 39.15 3.28
1876 1886 1.369625 GTGCCGTCTATGGACCAAAG 58.630 55.000 0.00 0.00 39.15 2.77
1877 1887 0.251916 TGCCGTCTATGGACCAAAGG 59.748 55.000 0.00 0.19 39.15 3.11
1878 1888 0.463833 GCCGTCTATGGACCAAAGGG 60.464 60.000 0.00 3.82 39.15 3.95
1879 1889 0.463833 CCGTCTATGGACCAAAGGGC 60.464 60.000 0.00 0.00 39.15 5.19
1880 1890 0.251916 CGTCTATGGACCAAAGGGCA 59.748 55.000 0.00 0.00 39.15 5.36
1881 1891 1.339631 CGTCTATGGACCAAAGGGCAA 60.340 52.381 0.00 0.00 39.15 4.52
1882 1892 2.092323 GTCTATGGACCAAAGGGCAAC 58.908 52.381 0.00 0.00 37.90 4.17
1883 1893 3.205419 GTCTATGGACCAAAGGGCAACC 61.205 54.545 0.00 0.00 46.86 3.77
1910 1920 5.946298 TCGTGGTACGATATAATAAGCAGG 58.054 41.667 0.00 0.00 46.73 4.85
1911 1921 4.561606 CGTGGTACGATATAATAAGCAGGC 59.438 45.833 0.00 0.00 46.05 4.85
1912 1922 5.621555 CGTGGTACGATATAATAAGCAGGCT 60.622 44.000 0.00 0.00 46.05 4.58
1913 1923 5.805994 GTGGTACGATATAATAAGCAGGCTC 59.194 44.000 0.00 0.00 0.00 4.70
1914 1924 5.715279 TGGTACGATATAATAAGCAGGCTCT 59.285 40.000 0.00 0.00 0.00 4.09
1915 1925 6.127703 TGGTACGATATAATAAGCAGGCTCTC 60.128 42.308 0.00 0.00 0.00 3.20
1916 1926 5.331876 ACGATATAATAAGCAGGCTCTCC 57.668 43.478 0.00 0.00 0.00 3.71
1917 1927 5.020132 ACGATATAATAAGCAGGCTCTCCT 58.980 41.667 0.00 0.00 45.66 3.69
1918 1928 5.482175 ACGATATAATAAGCAGGCTCTCCTT 59.518 40.000 0.00 0.00 41.93 3.36
1919 1929 5.809562 CGATATAATAAGCAGGCTCTCCTTG 59.190 44.000 0.00 0.00 41.93 3.61
1920 1930 6.350528 CGATATAATAAGCAGGCTCTCCTTGA 60.351 42.308 0.00 0.00 41.93 3.02
1921 1931 5.839517 ATAATAAGCAGGCTCTCCTTGAT 57.160 39.130 0.00 0.00 41.93 2.57
1922 1932 6.942163 ATAATAAGCAGGCTCTCCTTGATA 57.058 37.500 0.00 0.00 41.93 2.15
1923 1933 5.636903 AATAAGCAGGCTCTCCTTGATAA 57.363 39.130 0.00 0.00 41.93 1.75
1924 1934 5.839517 ATAAGCAGGCTCTCCTTGATAAT 57.160 39.130 0.00 0.00 41.93 1.28
1925 1935 4.516652 AAGCAGGCTCTCCTTGATAATT 57.483 40.909 0.00 0.00 41.93 1.40
1926 1936 4.084011 AGCAGGCTCTCCTTGATAATTC 57.916 45.455 0.00 0.00 41.93 2.17
1927 1937 3.457380 AGCAGGCTCTCCTTGATAATTCA 59.543 43.478 0.00 0.00 41.93 2.57
1928 1938 4.104420 AGCAGGCTCTCCTTGATAATTCAT 59.896 41.667 0.00 0.00 41.93 2.57
1929 1939 5.309020 AGCAGGCTCTCCTTGATAATTCATA 59.691 40.000 0.00 0.00 41.93 2.15
1930 1940 6.000219 GCAGGCTCTCCTTGATAATTCATAA 59.000 40.000 0.00 0.00 41.93 1.90
1931 1941 6.488006 GCAGGCTCTCCTTGATAATTCATAAA 59.512 38.462 0.00 0.00 41.93 1.40
1932 1942 7.013655 GCAGGCTCTCCTTGATAATTCATAAAA 59.986 37.037 0.00 0.00 41.93 1.52
1933 1943 9.075678 CAGGCTCTCCTTGATAATTCATAAAAT 57.924 33.333 0.00 0.00 41.93 1.82
1934 1944 9.075678 AGGCTCTCCTTGATAATTCATAAAATG 57.924 33.333 0.00 0.00 40.66 2.32
1935 1945 9.071276 GGCTCTCCTTGATAATTCATAAAATGA 57.929 33.333 0.00 0.00 37.55 2.57
1955 1965 9.959749 AAAATGAACACTTATTAAACGTGATGT 57.040 25.926 8.54 0.00 33.13 3.06
1956 1966 9.607285 AAATGAACACTTATTAAACGTGATGTC 57.393 29.630 8.54 4.75 33.13 3.06
1957 1967 7.124347 TGAACACTTATTAAACGTGATGTCC 57.876 36.000 8.54 0.00 33.13 4.02
1958 1968 6.706716 TGAACACTTATTAAACGTGATGTCCA 59.293 34.615 8.54 0.00 33.13 4.02
1959 1969 7.389330 TGAACACTTATTAAACGTGATGTCCAT 59.611 33.333 8.54 0.00 33.13 3.41
1960 1970 8.780846 AACACTTATTAAACGTGATGTCCATA 57.219 30.769 8.54 0.00 33.13 2.74
1961 1971 8.958119 ACACTTATTAAACGTGATGTCCATAT 57.042 30.769 8.54 0.00 33.13 1.78
1962 1972 8.826710 ACACTTATTAAACGTGATGTCCATATG 58.173 33.333 0.00 0.00 33.13 1.78
1963 1973 8.826710 CACTTATTAAACGTGATGTCCATATGT 58.173 33.333 1.24 0.00 0.00 2.29
1964 1974 9.391006 ACTTATTAAACGTGATGTCCATATGTT 57.609 29.630 1.24 0.00 0.00 2.71
1965 1975 9.650371 CTTATTAAACGTGATGTCCATATGTTG 57.350 33.333 1.24 0.00 0.00 3.33
1966 1976 4.355543 AAACGTGATGTCCATATGTTGC 57.644 40.909 1.24 0.00 0.00 4.17
1967 1977 3.266510 ACGTGATGTCCATATGTTGCT 57.733 42.857 1.24 0.00 0.00 3.91
1968 1978 3.609853 ACGTGATGTCCATATGTTGCTT 58.390 40.909 1.24 0.00 0.00 3.91
1969 1979 4.765273 ACGTGATGTCCATATGTTGCTTA 58.235 39.130 1.24 0.00 0.00 3.09
1970 1980 4.811024 ACGTGATGTCCATATGTTGCTTAG 59.189 41.667 1.24 0.00 0.00 2.18
1971 1981 4.319046 CGTGATGTCCATATGTTGCTTAGC 60.319 45.833 0.00 0.00 0.00 3.09
1972 1982 4.818546 GTGATGTCCATATGTTGCTTAGCT 59.181 41.667 5.60 0.00 0.00 3.32
1973 1983 5.297776 GTGATGTCCATATGTTGCTTAGCTT 59.702 40.000 5.60 0.00 0.00 3.74
1974 1984 5.528690 TGATGTCCATATGTTGCTTAGCTTC 59.471 40.000 5.60 0.00 0.00 3.86
1975 1985 4.199310 TGTCCATATGTTGCTTAGCTTCC 58.801 43.478 5.60 0.00 0.00 3.46
1976 1986 4.080356 TGTCCATATGTTGCTTAGCTTCCT 60.080 41.667 5.60 0.00 0.00 3.36
1977 1987 4.274459 GTCCATATGTTGCTTAGCTTCCTG 59.726 45.833 5.60 0.00 0.00 3.86
1978 1988 3.567164 CCATATGTTGCTTAGCTTCCTGG 59.433 47.826 5.60 1.61 0.00 4.45
1979 1989 4.454678 CATATGTTGCTTAGCTTCCTGGA 58.545 43.478 5.60 0.00 0.00 3.86
1980 1990 2.185004 TGTTGCTTAGCTTCCTGGAC 57.815 50.000 5.60 0.00 0.00 4.02
1981 1991 1.699634 TGTTGCTTAGCTTCCTGGACT 59.300 47.619 5.60 0.00 0.00 3.85
1982 1992 2.903784 TGTTGCTTAGCTTCCTGGACTA 59.096 45.455 5.60 0.00 0.00 2.59
1983 1993 3.263261 GTTGCTTAGCTTCCTGGACTAC 58.737 50.000 5.60 0.00 0.00 2.73
1984 1994 2.821437 TGCTTAGCTTCCTGGACTACT 58.179 47.619 5.60 0.00 0.00 2.57
1985 1995 2.497675 TGCTTAGCTTCCTGGACTACTG 59.502 50.000 5.60 0.00 0.00 2.74
1986 1996 2.761208 GCTTAGCTTCCTGGACTACTGA 59.239 50.000 0.00 0.00 0.00 3.41
1987 1997 3.386402 GCTTAGCTTCCTGGACTACTGAT 59.614 47.826 0.00 0.00 0.00 2.90
1988 1998 4.141824 GCTTAGCTTCCTGGACTACTGATT 60.142 45.833 0.00 0.00 0.00 2.57
1989 1999 5.627968 GCTTAGCTTCCTGGACTACTGATTT 60.628 44.000 0.00 0.00 0.00 2.17
1990 2000 4.917906 AGCTTCCTGGACTACTGATTTT 57.082 40.909 0.00 0.00 0.00 1.82
1991 2001 4.583871 AGCTTCCTGGACTACTGATTTTG 58.416 43.478 0.00 0.00 0.00 2.44
1992 2002 4.042187 AGCTTCCTGGACTACTGATTTTGT 59.958 41.667 0.00 0.00 0.00 2.83
1993 2003 4.762251 GCTTCCTGGACTACTGATTTTGTT 59.238 41.667 0.00 0.00 0.00 2.83
1994 2004 5.241728 GCTTCCTGGACTACTGATTTTGTTT 59.758 40.000 0.00 0.00 0.00 2.83
1995 2005 6.239036 GCTTCCTGGACTACTGATTTTGTTTT 60.239 38.462 0.00 0.00 0.00 2.43
1996 2006 7.654022 TTCCTGGACTACTGATTTTGTTTTT 57.346 32.000 0.00 0.00 0.00 1.94
1997 2007 7.272037 TCCTGGACTACTGATTTTGTTTTTC 57.728 36.000 0.00 0.00 0.00 2.29
1998 2008 7.060421 TCCTGGACTACTGATTTTGTTTTTCT 58.940 34.615 0.00 0.00 0.00 2.52
1999 2009 8.215050 TCCTGGACTACTGATTTTGTTTTTCTA 58.785 33.333 0.00 0.00 0.00 2.10
2000 2010 8.507249 CCTGGACTACTGATTTTGTTTTTCTAG 58.493 37.037 0.00 0.00 0.00 2.43
2001 2011 7.871853 TGGACTACTGATTTTGTTTTTCTAGC 58.128 34.615 0.00 0.00 0.00 3.42
2002 2012 7.040686 TGGACTACTGATTTTGTTTTTCTAGCC 60.041 37.037 0.00 0.00 0.00 3.93
2003 2013 7.040686 GGACTACTGATTTTGTTTTTCTAGCCA 60.041 37.037 0.00 0.00 0.00 4.75
2004 2014 7.649057 ACTACTGATTTTGTTTTTCTAGCCAC 58.351 34.615 0.00 0.00 0.00 5.01
2005 2015 6.463995 ACTGATTTTGTTTTTCTAGCCACA 57.536 33.333 0.00 0.00 0.00 4.17
2006 2016 6.872920 ACTGATTTTGTTTTTCTAGCCACAA 58.127 32.000 0.00 0.00 0.00 3.33
2007 2017 6.756542 ACTGATTTTGTTTTTCTAGCCACAAC 59.243 34.615 0.00 0.00 0.00 3.32
2008 2018 6.872920 TGATTTTGTTTTTCTAGCCACAACT 58.127 32.000 0.00 0.00 0.00 3.16
2009 2019 7.327214 TGATTTTGTTTTTCTAGCCACAACTT 58.673 30.769 0.00 0.00 0.00 2.66
2010 2020 7.491048 TGATTTTGTTTTTCTAGCCACAACTTC 59.509 33.333 0.00 0.00 0.00 3.01
2011 2021 4.911514 TGTTTTTCTAGCCACAACTTCC 57.088 40.909 0.00 0.00 0.00 3.46
2012 2022 4.274147 TGTTTTTCTAGCCACAACTTCCA 58.726 39.130 0.00 0.00 0.00 3.53
2013 2023 4.097286 TGTTTTTCTAGCCACAACTTCCAC 59.903 41.667 0.00 0.00 0.00 4.02
2014 2024 3.569194 TTTCTAGCCACAACTTCCACA 57.431 42.857 0.00 0.00 0.00 4.17
2015 2025 3.569194 TTCTAGCCACAACTTCCACAA 57.431 42.857 0.00 0.00 0.00 3.33
2016 2026 3.569194 TCTAGCCACAACTTCCACAAA 57.431 42.857 0.00 0.00 0.00 2.83
2017 2027 4.098914 TCTAGCCACAACTTCCACAAAT 57.901 40.909 0.00 0.00 0.00 2.32
2018 2028 3.820467 TCTAGCCACAACTTCCACAAATG 59.180 43.478 0.00 0.00 0.00 2.32
2019 2029 2.387757 AGCCACAACTTCCACAAATGT 58.612 42.857 0.00 0.00 0.00 2.71
2020 2030 2.765699 AGCCACAACTTCCACAAATGTT 59.234 40.909 0.00 0.00 0.00 2.71
2021 2031 3.957497 AGCCACAACTTCCACAAATGTTA 59.043 39.130 0.00 0.00 0.00 2.41
2022 2032 4.588528 AGCCACAACTTCCACAAATGTTAT 59.411 37.500 0.00 0.00 0.00 1.89
2023 2033 5.070313 AGCCACAACTTCCACAAATGTTATT 59.930 36.000 0.00 0.00 0.00 1.40
2024 2034 5.757808 GCCACAACTTCCACAAATGTTATTT 59.242 36.000 0.00 0.00 0.00 1.40
2025 2035 6.259829 GCCACAACTTCCACAAATGTTATTTT 59.740 34.615 0.00 0.00 0.00 1.82
2026 2036 7.629130 CCACAACTTCCACAAATGTTATTTTG 58.371 34.615 0.00 0.00 41.37 2.44
2038 2048 9.719279 ACAAATGTTATTTTGTGCTGAATTTTG 57.281 25.926 2.04 0.00 45.55 2.44
2039 2049 9.171701 CAAATGTTATTTTGTGCTGAATTTTGG 57.828 29.630 0.00 0.00 32.99 3.28
2040 2050 8.449251 AATGTTATTTTGTGCTGAATTTTGGT 57.551 26.923 0.00 0.00 0.00 3.67
2041 2051 9.553064 AATGTTATTTTGTGCTGAATTTTGGTA 57.447 25.926 0.00 0.00 0.00 3.25
2042 2052 9.723601 ATGTTATTTTGTGCTGAATTTTGGTAT 57.276 25.926 0.00 0.00 0.00 2.73
2043 2053 8.986847 TGTTATTTTGTGCTGAATTTTGGTATG 58.013 29.630 0.00 0.00 0.00 2.39
2044 2054 5.921004 TTTTGTGCTGAATTTTGGTATGC 57.079 34.783 0.00 0.00 0.00 3.14
2045 2055 4.597404 TTGTGCTGAATTTTGGTATGCA 57.403 36.364 0.00 0.00 0.00 3.96
2046 2056 4.804868 TGTGCTGAATTTTGGTATGCAT 57.195 36.364 3.79 3.79 0.00 3.96
2047 2057 4.496360 TGTGCTGAATTTTGGTATGCATG 58.504 39.130 10.16 0.00 0.00 4.06
2048 2058 4.220163 TGTGCTGAATTTTGGTATGCATGA 59.780 37.500 10.16 0.00 0.00 3.07
2049 2059 5.170021 GTGCTGAATTTTGGTATGCATGAA 58.830 37.500 10.16 0.00 0.00 2.57
2050 2060 5.638657 GTGCTGAATTTTGGTATGCATGAAA 59.361 36.000 10.16 5.72 0.00 2.69
2051 2061 6.147492 GTGCTGAATTTTGGTATGCATGAAAA 59.853 34.615 10.16 11.78 0.00 2.29
2052 2062 6.709397 TGCTGAATTTTGGTATGCATGAAAAA 59.291 30.769 10.16 12.97 0.00 1.94
2053 2063 7.017055 GCTGAATTTTGGTATGCATGAAAAAC 58.983 34.615 10.16 10.34 0.00 2.43
2054 2064 7.307870 GCTGAATTTTGGTATGCATGAAAAACA 60.308 33.333 10.16 13.45 0.00 2.83
2055 2065 8.618702 TGAATTTTGGTATGCATGAAAAACAT 57.381 26.923 10.16 6.36 40.17 2.71
2056 2066 9.064706 TGAATTTTGGTATGCATGAAAAACATT 57.935 25.926 10.16 5.82 37.07 2.71
2057 2067 9.896263 GAATTTTGGTATGCATGAAAAACATTT 57.104 25.926 10.16 5.20 37.07 2.32
2058 2068 9.680315 AATTTTGGTATGCATGAAAAACATTTG 57.320 25.926 10.16 0.00 37.07 2.32
2059 2069 7.798596 TTTGGTATGCATGAAAAACATTTGT 57.201 28.000 10.16 0.00 37.07 2.83
2060 2070 7.418840 TTGGTATGCATGAAAAACATTTGTC 57.581 32.000 10.16 0.00 37.07 3.18
2061 2071 6.519382 TGGTATGCATGAAAAACATTTGTCA 58.481 32.000 10.16 0.00 38.66 3.58
2062 2072 6.988580 TGGTATGCATGAAAAACATTTGTCAA 59.011 30.769 10.16 0.00 37.89 3.18
2063 2073 7.496920 TGGTATGCATGAAAAACATTTGTCAAA 59.503 29.630 10.16 0.00 37.89 2.69
2064 2074 8.011106 GGTATGCATGAAAAACATTTGTCAAAG 58.989 33.333 10.16 0.00 37.89 2.77
2065 2075 6.981762 TGCATGAAAAACATTTGTCAAAGT 57.018 29.167 4.03 0.09 37.89 2.66
2066 2076 7.375106 TGCATGAAAAACATTTGTCAAAGTT 57.625 28.000 4.03 5.89 37.89 2.66
2067 2077 7.814642 TGCATGAAAAACATTTGTCAAAGTTT 58.185 26.923 14.74 14.74 37.89 2.66
2068 2078 8.939929 TGCATGAAAAACATTTGTCAAAGTTTA 58.060 25.926 18.15 9.51 37.89 2.01
2069 2079 9.209297 GCATGAAAAACATTTGTCAAAGTTTAC 57.791 29.630 18.15 16.04 37.89 2.01
2136 2146 8.871629 TTTACTGTTTATAAGGGAGCATTTGA 57.128 30.769 0.00 0.00 0.00 2.69
2137 2147 8.506168 TTACTGTTTATAAGGGAGCATTTGAG 57.494 34.615 0.00 0.00 0.00 3.02
2138 2148 5.358160 ACTGTTTATAAGGGAGCATTTGAGC 59.642 40.000 0.00 0.00 0.00 4.26
2140 2150 5.357878 TGTTTATAAGGGAGCATTTGAGCTG 59.642 40.000 0.00 0.00 46.75 4.24
2141 2151 2.425143 TAAGGGAGCATTTGAGCTGG 57.575 50.000 0.00 0.00 46.75 4.85
2142 2152 0.324091 AAGGGAGCATTTGAGCTGGG 60.324 55.000 0.00 0.00 46.75 4.45
2143 2153 1.210204 AGGGAGCATTTGAGCTGGGA 61.210 55.000 0.00 0.00 46.75 4.37
2144 2154 0.750911 GGGAGCATTTGAGCTGGGAG 60.751 60.000 0.00 0.00 46.75 4.30
2145 2155 0.034670 GGAGCATTTGAGCTGGGAGT 60.035 55.000 0.00 0.00 46.75 3.85
2146 2156 1.210478 GGAGCATTTGAGCTGGGAGTA 59.790 52.381 0.00 0.00 46.75 2.59
2147 2157 2.559440 GAGCATTTGAGCTGGGAGTAG 58.441 52.381 0.00 0.00 46.75 2.57
2148 2158 2.169352 GAGCATTTGAGCTGGGAGTAGA 59.831 50.000 0.00 0.00 46.75 2.59
2149 2159 2.573462 AGCATTTGAGCTGGGAGTAGAA 59.427 45.455 0.00 0.00 44.66 2.10
2150 2160 3.201708 AGCATTTGAGCTGGGAGTAGAAT 59.798 43.478 0.00 0.00 44.66 2.40
2151 2161 4.410228 AGCATTTGAGCTGGGAGTAGAATA 59.590 41.667 0.00 0.00 44.66 1.75
2152 2162 4.754114 GCATTTGAGCTGGGAGTAGAATAG 59.246 45.833 0.00 0.00 0.00 1.73
2153 2163 5.303971 CATTTGAGCTGGGAGTAGAATAGG 58.696 45.833 0.00 0.00 0.00 2.57
2154 2164 3.973472 TGAGCTGGGAGTAGAATAGGA 57.027 47.619 0.00 0.00 0.00 2.94
2155 2165 3.567397 TGAGCTGGGAGTAGAATAGGAC 58.433 50.000 0.00 0.00 0.00 3.85
2156 2166 3.205507 TGAGCTGGGAGTAGAATAGGACT 59.794 47.826 0.00 0.00 0.00 3.85
2157 2167 4.219919 GAGCTGGGAGTAGAATAGGACTT 58.780 47.826 0.00 0.00 0.00 3.01
2158 2168 4.625963 AGCTGGGAGTAGAATAGGACTTT 58.374 43.478 0.00 0.00 0.00 2.66
2159 2169 4.651962 AGCTGGGAGTAGAATAGGACTTTC 59.348 45.833 0.00 0.00 0.00 2.62
2160 2170 4.500035 GCTGGGAGTAGAATAGGACTTTCG 60.500 50.000 0.00 0.00 0.00 3.46
2161 2171 4.607239 TGGGAGTAGAATAGGACTTTCGT 58.393 43.478 0.00 0.00 0.00 3.85
2162 2172 5.759059 TGGGAGTAGAATAGGACTTTCGTA 58.241 41.667 0.00 0.00 0.00 3.43
2163 2173 6.189859 TGGGAGTAGAATAGGACTTTCGTAA 58.810 40.000 0.00 0.00 0.00 3.18
2164 2174 6.664816 TGGGAGTAGAATAGGACTTTCGTAAA 59.335 38.462 0.00 0.00 0.00 2.01
2165 2175 7.178983 TGGGAGTAGAATAGGACTTTCGTAAAA 59.821 37.037 0.00 0.00 0.00 1.52
2166 2176 8.037166 GGGAGTAGAATAGGACTTTCGTAAAAA 58.963 37.037 0.00 0.00 0.00 1.94
2167 2177 9.597170 GGAGTAGAATAGGACTTTCGTAAAAAT 57.403 33.333 0.00 0.00 0.00 1.82
2173 2183 8.911247 AATAGGACTTTCGTAAAAATGAATGC 57.089 30.769 0.00 0.00 0.00 3.56
2174 2184 6.575162 AGGACTTTCGTAAAAATGAATGCT 57.425 33.333 0.00 0.00 0.00 3.79
2175 2185 6.981722 AGGACTTTCGTAAAAATGAATGCTT 58.018 32.000 0.00 0.00 0.00 3.91
2176 2186 7.433680 AGGACTTTCGTAAAAATGAATGCTTT 58.566 30.769 0.00 0.00 0.00 3.51
2177 2187 8.573035 AGGACTTTCGTAAAAATGAATGCTTTA 58.427 29.630 0.00 0.00 0.00 1.85
2178 2188 8.635983 GGACTTTCGTAAAAATGAATGCTTTAC 58.364 33.333 0.00 0.00 33.91 2.01
2179 2189 9.394477 GACTTTCGTAAAAATGAATGCTTTACT 57.606 29.630 0.00 0.00 34.70 2.24
2180 2190 9.180678 ACTTTCGTAAAAATGAATGCTTTACTG 57.819 29.630 0.00 0.00 34.70 2.74
2181 2191 9.393249 CTTTCGTAAAAATGAATGCTTTACTGA 57.607 29.630 0.00 0.00 34.70 3.41
2182 2192 9.906660 TTTCGTAAAAATGAATGCTTTACTGAT 57.093 25.926 0.00 0.00 34.70 2.90
2203 2213 8.413229 ACTGATAATATGTTTACAATGGTTGCC 58.587 33.333 0.00 0.00 0.00 4.52
2204 2214 7.421599 TGATAATATGTTTACAATGGTTGCCG 58.578 34.615 0.00 0.00 0.00 5.69
2205 2215 5.652994 AATATGTTTACAATGGTTGCCGT 57.347 34.783 0.00 0.00 0.00 5.68
2206 2216 6.761099 AATATGTTTACAATGGTTGCCGTA 57.239 33.333 0.00 0.00 0.00 4.02
2207 2217 6.952773 ATATGTTTACAATGGTTGCCGTAT 57.047 33.333 0.00 0.00 0.00 3.06
2208 2218 8.453238 AATATGTTTACAATGGTTGCCGTATA 57.547 30.769 0.00 0.00 0.00 1.47
2209 2219 5.548706 TGTTTACAATGGTTGCCGTATAC 57.451 39.130 0.00 0.00 0.00 1.47
2210 2220 4.093115 TGTTTACAATGGTTGCCGTATACG 59.907 41.667 18.40 18.40 39.44 3.06
2211 2221 2.676632 ACAATGGTTGCCGTATACGA 57.323 45.000 26.37 4.58 43.02 3.43
2212 2222 3.188159 ACAATGGTTGCCGTATACGAT 57.812 42.857 26.37 7.91 43.02 3.73
2213 2223 4.325028 ACAATGGTTGCCGTATACGATA 57.675 40.909 26.37 11.68 43.02 2.92
2214 2224 4.053295 ACAATGGTTGCCGTATACGATAC 58.947 43.478 26.37 18.34 43.02 2.24
2215 2225 4.052608 CAATGGTTGCCGTATACGATACA 58.947 43.478 26.37 17.33 43.02 2.29
2216 2226 3.082698 TGGTTGCCGTATACGATACAC 57.917 47.619 26.37 15.51 43.02 2.90
2218 2228 2.286950 GGTTGCCGTATACGATACACGA 60.287 50.000 26.37 7.33 45.77 4.35
2219 2229 3.558505 GTTGCCGTATACGATACACGAT 58.441 45.455 26.37 0.00 45.77 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 0.554792 ATGGCTAGCCTCCAAAGCAT 59.445 50.000 33.07 13.86 38.01 3.79
442 444 1.065126 CCCCTTCTGATCCACCTCAAC 60.065 57.143 0.00 0.00 0.00 3.18
603 607 2.370281 ACGTATTGTGACAGCCTGAG 57.630 50.000 0.00 0.00 0.00 3.35
1014 1021 7.364851 GGCCTAGGTTTAGAACTATCTTCAACT 60.365 40.741 11.31 0.00 37.10 3.16
1049 1056 3.396260 TCAGTAAACTACCTGCACCAC 57.604 47.619 0.00 0.00 0.00 4.16
1127 1136 2.539476 GAATAAAGCCATTGCAACCCG 58.461 47.619 0.00 0.00 41.13 5.28
1132 1141 6.349280 GGAATATAGCGAATAAAGCCATTGCA 60.349 38.462 0.00 0.00 41.13 4.08
1301 1310 9.628500 GGGATTAGTTCTTGTTTGTATATCCTT 57.372 33.333 0.00 0.00 0.00 3.36
1302 1311 8.778059 TGGGATTAGTTCTTGTTTGTATATCCT 58.222 33.333 0.00 0.00 0.00 3.24
1303 1312 8.974060 TGGGATTAGTTCTTGTTTGTATATCC 57.026 34.615 0.00 0.00 0.00 2.59
1304 1313 8.560374 GCTGGGATTAGTTCTTGTTTGTATATC 58.440 37.037 0.00 0.00 0.00 1.63
1305 1314 7.226720 CGCTGGGATTAGTTCTTGTTTGTATAT 59.773 37.037 0.00 0.00 0.00 0.86
1306 1315 6.537301 CGCTGGGATTAGTTCTTGTTTGTATA 59.463 38.462 0.00 0.00 0.00 1.47
1307 1316 5.354234 CGCTGGGATTAGTTCTTGTTTGTAT 59.646 40.000 0.00 0.00 0.00 2.29
1308 1317 4.693566 CGCTGGGATTAGTTCTTGTTTGTA 59.306 41.667 0.00 0.00 0.00 2.41
1309 1318 3.502211 CGCTGGGATTAGTTCTTGTTTGT 59.498 43.478 0.00 0.00 0.00 2.83
1310 1319 3.751175 TCGCTGGGATTAGTTCTTGTTTG 59.249 43.478 0.00 0.00 0.00 2.93
1311 1320 4.015872 TCGCTGGGATTAGTTCTTGTTT 57.984 40.909 0.00 0.00 0.00 2.83
1312 1321 3.695830 TCGCTGGGATTAGTTCTTGTT 57.304 42.857 0.00 0.00 0.00 2.83
1313 1322 3.695830 TTCGCTGGGATTAGTTCTTGT 57.304 42.857 0.00 0.00 0.00 3.16
1314 1323 4.669197 CGTTTTCGCTGGGATTAGTTCTTG 60.669 45.833 0.00 0.00 36.22 3.02
1315 1324 3.435671 CGTTTTCGCTGGGATTAGTTCTT 59.564 43.478 0.00 0.00 36.22 2.52
1316 1325 3.000727 CGTTTTCGCTGGGATTAGTTCT 58.999 45.455 0.00 0.00 36.22 3.01
1317 1326 3.385079 CGTTTTCGCTGGGATTAGTTC 57.615 47.619 0.00 0.00 36.22 3.01
1331 1340 2.742053 TGATTAGCCTGACTGCGTTTTC 59.258 45.455 0.00 0.00 36.02 2.29
1332 1341 2.778299 TGATTAGCCTGACTGCGTTTT 58.222 42.857 0.00 0.00 36.02 2.43
1333 1342 2.472695 TGATTAGCCTGACTGCGTTT 57.527 45.000 0.00 0.00 36.02 3.60
1334 1343 2.698855 ATGATTAGCCTGACTGCGTT 57.301 45.000 0.00 0.00 36.02 4.84
1335 1344 3.819564 TTATGATTAGCCTGACTGCGT 57.180 42.857 0.00 0.00 36.02 5.24
1336 1345 4.309933 TCATTATGATTAGCCTGACTGCG 58.690 43.478 0.00 0.00 36.02 5.18
1337 1346 5.545588 TCTCATTATGATTAGCCTGACTGC 58.454 41.667 0.00 0.00 0.00 4.40
1338 1347 8.442632 TTTTCTCATTATGATTAGCCTGACTG 57.557 34.615 0.00 0.00 0.00 3.51
1383 1392 4.275689 TGACTGCTTATCCAACAACACTTG 59.724 41.667 0.00 0.00 0.00 3.16
1388 1397 2.162408 GCCTGACTGCTTATCCAACAAC 59.838 50.000 0.00 0.00 0.00 3.32
1405 1414 5.355071 TGCTTCAGTTTATGTGATTAGCCTG 59.645 40.000 0.00 0.00 0.00 4.85
1423 1432 1.354031 TCTGGCCCATTTAGTGCTTCA 59.646 47.619 0.00 0.00 0.00 3.02
1452 1461 3.733727 GGTTCAAAGCGTAATGGTTGTTG 59.266 43.478 0.00 0.00 38.56 3.33
1454 1463 2.031508 CGGTTCAAAGCGTAATGGTTGT 60.032 45.455 6.20 0.00 44.15 3.32
1582 1591 7.219726 CCAAAATTTTTCGTTTTCCCATGTTTG 59.780 33.333 0.00 0.00 0.00 2.93
1623 1632 5.004916 TCGAACAAAAAGCCAAAAATCGAAC 59.995 36.000 0.00 0.00 34.32 3.95
1625 1634 4.673441 TCGAACAAAAAGCCAAAAATCGA 58.327 34.783 0.00 0.00 34.79 3.59
1626 1635 5.574815 ATCGAACAAAAAGCCAAAAATCG 57.425 34.783 0.00 0.00 0.00 3.34
1627 1636 7.305361 GCAAAATCGAACAAAAAGCCAAAAATC 60.305 33.333 0.00 0.00 0.00 2.17
1628 1637 6.471841 GCAAAATCGAACAAAAAGCCAAAAAT 59.528 30.769 0.00 0.00 0.00 1.82
1629 1638 5.797434 GCAAAATCGAACAAAAAGCCAAAAA 59.203 32.000 0.00 0.00 0.00 1.94
1630 1639 5.106555 TGCAAAATCGAACAAAAAGCCAAAA 60.107 32.000 0.00 0.00 0.00 2.44
1634 1644 3.308323 TGTGCAAAATCGAACAAAAAGCC 59.692 39.130 0.00 0.00 0.00 4.35
1651 1661 0.754957 CTTTTGGGTCAGGGTGTGCA 60.755 55.000 0.00 0.00 0.00 4.57
1658 1668 0.817634 TGACACGCTTTTGGGTCAGG 60.818 55.000 0.00 0.00 44.11 3.86
1667 1677 1.812571 GTGGGATCATTGACACGCTTT 59.187 47.619 0.00 0.00 0.00 3.51
1674 1684 7.604164 CCATATGTACTTAGTGGGATCATTGAC 59.396 40.741 1.24 0.00 0.00 3.18
1680 1690 5.238583 GCACCATATGTACTTAGTGGGATC 58.761 45.833 1.24 0.00 34.27 3.36
1684 1694 4.299155 CTCGCACCATATGTACTTAGTGG 58.701 47.826 1.24 11.99 36.06 4.00
1710 1720 3.297134 ACATTCCTTGGTCAGTTGTGT 57.703 42.857 0.00 0.00 0.00 3.72
1747 1757 0.833949 GGTCTAGGAAGAGGCCCAAG 59.166 60.000 0.00 0.00 34.93 3.61
1778 1788 4.990543 TTTGCTCTTCGACACAAGTATG 57.009 40.909 0.00 0.00 0.00 2.39
1789 1799 2.414825 GGAAGCTCTCTTTTGCTCTTCG 59.585 50.000 0.00 0.00 38.75 3.79
1849 1859 2.072487 ATAGACGGCACCCTGGCAT 61.072 57.895 0.00 0.00 43.94 4.40
1856 1866 0.035820 TTTGGTCCATAGACGGCACC 60.036 55.000 0.00 0.00 44.54 5.01
1860 1870 0.463833 GCCCTTTGGTCCATAGACGG 60.464 60.000 10.67 5.73 44.54 4.79
1862 1872 2.092323 GTTGCCCTTTGGTCCATAGAC 58.908 52.381 10.67 3.68 42.73 2.59
1867 1877 1.456705 GTGGTTGCCCTTTGGTCCA 60.457 57.895 0.00 0.00 0.00 4.02
1868 1878 2.207229 GGTGGTTGCCCTTTGGTCC 61.207 63.158 0.00 0.00 0.00 4.46
1869 1879 1.152546 AGGTGGTTGCCCTTTGGTC 60.153 57.895 0.00 0.00 0.00 4.02
1870 1880 1.152546 GAGGTGGTTGCCCTTTGGT 60.153 57.895 0.00 0.00 30.60 3.67
1871 1881 2.268076 CGAGGTGGTTGCCCTTTGG 61.268 63.158 0.00 0.00 30.60 3.28
1872 1882 1.528309 ACGAGGTGGTTGCCCTTTG 60.528 57.895 0.00 0.00 30.60 2.77
1873 1883 1.528309 CACGAGGTGGTTGCCCTTT 60.528 57.895 0.00 0.00 30.60 3.11
1874 1884 2.113139 CACGAGGTGGTTGCCCTT 59.887 61.111 0.00 0.00 30.60 3.95
1888 1898 4.561606 GCCTGCTTATTATATCGTACCACG 59.438 45.833 0.00 0.00 44.19 4.94
1889 1899 5.721232 AGCCTGCTTATTATATCGTACCAC 58.279 41.667 0.00 0.00 0.00 4.16
1890 1900 5.715279 AGAGCCTGCTTATTATATCGTACCA 59.285 40.000 0.00 0.00 0.00 3.25
1891 1901 6.210287 AGAGCCTGCTTATTATATCGTACC 57.790 41.667 0.00 0.00 0.00 3.34
1892 1902 6.095720 AGGAGAGCCTGCTTATTATATCGTAC 59.904 42.308 0.00 0.00 44.90 3.67
1893 1903 6.188407 AGGAGAGCCTGCTTATTATATCGTA 58.812 40.000 0.00 0.00 44.90 3.43
1894 1904 5.020132 AGGAGAGCCTGCTTATTATATCGT 58.980 41.667 0.00 0.00 44.90 3.73
1895 1905 5.590530 AGGAGAGCCTGCTTATTATATCG 57.409 43.478 0.00 0.00 44.90 2.92
1896 1906 6.940739 TCAAGGAGAGCCTGCTTATTATATC 58.059 40.000 8.26 0.00 46.28 1.63
1897 1907 6.942163 TCAAGGAGAGCCTGCTTATTATAT 57.058 37.500 8.26 0.00 46.28 0.86
1898 1908 6.942163 ATCAAGGAGAGCCTGCTTATTATA 57.058 37.500 8.26 0.00 46.28 0.98
1899 1909 5.839517 ATCAAGGAGAGCCTGCTTATTAT 57.160 39.130 8.26 2.24 46.28 1.28
1900 1910 6.747414 TTATCAAGGAGAGCCTGCTTATTA 57.253 37.500 8.26 2.63 46.28 0.98
1901 1911 5.636903 TTATCAAGGAGAGCCTGCTTATT 57.363 39.130 8.26 3.37 46.28 1.40
1902 1912 5.839517 ATTATCAAGGAGAGCCTGCTTAT 57.160 39.130 8.26 6.31 46.28 1.73
1903 1913 5.130975 TGAATTATCAAGGAGAGCCTGCTTA 59.869 40.000 8.26 0.00 46.28 3.09
1904 1914 4.080129 TGAATTATCAAGGAGAGCCTGCTT 60.080 41.667 3.66 3.66 46.28 3.91
1905 1915 3.457380 TGAATTATCAAGGAGAGCCTGCT 59.543 43.478 0.00 0.00 46.28 4.24
1906 1916 3.813443 TGAATTATCAAGGAGAGCCTGC 58.187 45.455 0.00 0.00 46.28 4.85
1907 1917 8.455903 TTTTATGAATTATCAAGGAGAGCCTG 57.544 34.615 0.00 0.00 46.28 4.85
1909 1919 9.071276 TCATTTTATGAATTATCAAGGAGAGCC 57.929 33.333 0.00 0.00 39.49 4.70
1929 1939 9.959749 ACATCACGTTTAATAAGTGTTCATTTT 57.040 25.926 0.00 0.00 37.20 1.82
1930 1940 9.607285 GACATCACGTTTAATAAGTGTTCATTT 57.393 29.630 0.00 0.00 37.20 2.32
1931 1941 8.234546 GGACATCACGTTTAATAAGTGTTCATT 58.765 33.333 0.00 0.00 37.20 2.57
1932 1942 7.389330 TGGACATCACGTTTAATAAGTGTTCAT 59.611 33.333 0.00 0.00 37.20 2.57
1933 1943 6.706716 TGGACATCACGTTTAATAAGTGTTCA 59.293 34.615 0.00 0.00 37.20 3.18
1934 1944 7.124347 TGGACATCACGTTTAATAAGTGTTC 57.876 36.000 0.00 0.00 37.20 3.18
1935 1945 7.681939 ATGGACATCACGTTTAATAAGTGTT 57.318 32.000 0.00 0.00 37.20 3.32
1936 1946 8.826710 CATATGGACATCACGTTTAATAAGTGT 58.173 33.333 0.00 0.00 37.20 3.55
1937 1947 8.826710 ACATATGGACATCACGTTTAATAAGTG 58.173 33.333 7.80 0.00 37.24 3.16
1938 1948 8.958119 ACATATGGACATCACGTTTAATAAGT 57.042 30.769 7.80 0.00 0.00 2.24
1939 1949 9.650371 CAACATATGGACATCACGTTTAATAAG 57.350 33.333 7.80 0.00 0.00 1.73
1940 1950 8.126074 GCAACATATGGACATCACGTTTAATAA 58.874 33.333 7.80 0.00 0.00 1.40
1941 1951 7.497579 AGCAACATATGGACATCACGTTTAATA 59.502 33.333 7.80 0.00 0.00 0.98
1942 1952 6.318648 AGCAACATATGGACATCACGTTTAAT 59.681 34.615 7.80 0.00 0.00 1.40
1943 1953 5.645929 AGCAACATATGGACATCACGTTTAA 59.354 36.000 7.80 0.00 0.00 1.52
1944 1954 5.182487 AGCAACATATGGACATCACGTTTA 58.818 37.500 7.80 0.00 0.00 2.01
1945 1955 4.009675 AGCAACATATGGACATCACGTTT 58.990 39.130 7.80 0.00 0.00 3.60
1946 1956 3.609853 AGCAACATATGGACATCACGTT 58.390 40.909 7.80 0.00 0.00 3.99
1947 1957 3.266510 AGCAACATATGGACATCACGT 57.733 42.857 7.80 0.00 0.00 4.49
1948 1958 4.319046 GCTAAGCAACATATGGACATCACG 60.319 45.833 7.80 0.00 0.00 4.35
1949 1959 4.818546 AGCTAAGCAACATATGGACATCAC 59.181 41.667 7.80 0.00 0.00 3.06
1950 1960 5.039920 AGCTAAGCAACATATGGACATCA 57.960 39.130 7.80 0.00 0.00 3.07
1951 1961 5.049129 GGAAGCTAAGCAACATATGGACATC 60.049 44.000 7.80 0.00 0.00 3.06
1952 1962 4.823989 GGAAGCTAAGCAACATATGGACAT 59.176 41.667 7.80 0.00 0.00 3.06
1953 1963 4.080356 AGGAAGCTAAGCAACATATGGACA 60.080 41.667 7.80 0.00 0.00 4.02
1954 1964 4.274459 CAGGAAGCTAAGCAACATATGGAC 59.726 45.833 7.80 0.00 0.00 4.02
1955 1965 4.454678 CAGGAAGCTAAGCAACATATGGA 58.545 43.478 7.80 0.00 0.00 3.41
1956 1966 3.567164 CCAGGAAGCTAAGCAACATATGG 59.433 47.826 7.80 0.00 0.00 2.74
1957 1967 4.274459 GTCCAGGAAGCTAAGCAACATATG 59.726 45.833 0.00 0.00 0.00 1.78
1958 1968 4.164988 AGTCCAGGAAGCTAAGCAACATAT 59.835 41.667 0.00 0.00 0.00 1.78
1959 1969 3.519510 AGTCCAGGAAGCTAAGCAACATA 59.480 43.478 0.00 0.00 0.00 2.29
1960 1970 2.307098 AGTCCAGGAAGCTAAGCAACAT 59.693 45.455 0.00 0.00 0.00 2.71
1961 1971 1.699634 AGTCCAGGAAGCTAAGCAACA 59.300 47.619 0.00 0.00 0.00 3.33
1962 1972 2.481289 AGTCCAGGAAGCTAAGCAAC 57.519 50.000 0.00 0.00 0.00 4.17
1963 1973 3.055819 CAGTAGTCCAGGAAGCTAAGCAA 60.056 47.826 0.00 0.00 0.00 3.91
1964 1974 2.497675 CAGTAGTCCAGGAAGCTAAGCA 59.502 50.000 0.00 0.00 0.00 3.91
1965 1975 2.761208 TCAGTAGTCCAGGAAGCTAAGC 59.239 50.000 0.00 0.00 0.00 3.09
1966 1976 5.606348 AATCAGTAGTCCAGGAAGCTAAG 57.394 43.478 0.00 0.00 0.00 2.18
1967 1977 6.173339 CAAAATCAGTAGTCCAGGAAGCTAA 58.827 40.000 0.00 0.00 0.00 3.09
1968 1978 5.248477 ACAAAATCAGTAGTCCAGGAAGCTA 59.752 40.000 0.00 0.00 0.00 3.32
1969 1979 4.042187 ACAAAATCAGTAGTCCAGGAAGCT 59.958 41.667 0.00 0.00 0.00 3.74
1970 1980 4.327680 ACAAAATCAGTAGTCCAGGAAGC 58.672 43.478 0.00 0.00 0.00 3.86
1971 1981 6.884280 AAACAAAATCAGTAGTCCAGGAAG 57.116 37.500 0.00 0.00 0.00 3.46
1972 1982 7.559897 AGAAAAACAAAATCAGTAGTCCAGGAA 59.440 33.333 0.00 0.00 0.00 3.36
1973 1983 7.060421 AGAAAAACAAAATCAGTAGTCCAGGA 58.940 34.615 0.00 0.00 0.00 3.86
1974 1984 7.277174 AGAAAAACAAAATCAGTAGTCCAGG 57.723 36.000 0.00 0.00 0.00 4.45
1975 1985 8.017946 GCTAGAAAAACAAAATCAGTAGTCCAG 58.982 37.037 0.00 0.00 0.00 3.86
1976 1986 7.040686 GGCTAGAAAAACAAAATCAGTAGTCCA 60.041 37.037 0.00 0.00 0.00 4.02
1977 1987 7.040686 TGGCTAGAAAAACAAAATCAGTAGTCC 60.041 37.037 0.00 0.00 0.00 3.85
1978 1988 7.803659 GTGGCTAGAAAAACAAAATCAGTAGTC 59.196 37.037 0.00 0.00 0.00 2.59
1979 1989 7.284489 TGTGGCTAGAAAAACAAAATCAGTAGT 59.716 33.333 0.00 0.00 0.00 2.73
1980 1990 7.648142 TGTGGCTAGAAAAACAAAATCAGTAG 58.352 34.615 0.00 0.00 0.00 2.57
1981 1991 7.575414 TGTGGCTAGAAAAACAAAATCAGTA 57.425 32.000 0.00 0.00 0.00 2.74
1982 1992 6.463995 TGTGGCTAGAAAAACAAAATCAGT 57.536 33.333 0.00 0.00 0.00 3.41
1983 1993 6.980397 AGTTGTGGCTAGAAAAACAAAATCAG 59.020 34.615 0.00 0.00 34.54 2.90
1984 1994 6.872920 AGTTGTGGCTAGAAAAACAAAATCA 58.127 32.000 0.00 0.00 34.54 2.57
1985 1995 7.042725 GGAAGTTGTGGCTAGAAAAACAAAATC 60.043 37.037 0.00 0.72 34.54 2.17
1986 1996 6.761242 GGAAGTTGTGGCTAGAAAAACAAAAT 59.239 34.615 0.00 0.00 34.54 1.82
1987 1997 6.103330 GGAAGTTGTGGCTAGAAAAACAAAA 58.897 36.000 0.00 0.00 34.54 2.44
1988 1998 5.186021 TGGAAGTTGTGGCTAGAAAAACAAA 59.814 36.000 0.00 0.00 34.54 2.83
1989 1999 4.707448 TGGAAGTTGTGGCTAGAAAAACAA 59.293 37.500 0.00 0.00 0.00 2.83
1990 2000 4.097286 GTGGAAGTTGTGGCTAGAAAAACA 59.903 41.667 0.00 0.00 0.00 2.83
1991 2001 4.097286 TGTGGAAGTTGTGGCTAGAAAAAC 59.903 41.667 0.00 0.00 0.00 2.43
1992 2002 4.274147 TGTGGAAGTTGTGGCTAGAAAAA 58.726 39.130 0.00 0.00 0.00 1.94
1993 2003 3.892284 TGTGGAAGTTGTGGCTAGAAAA 58.108 40.909 0.00 0.00 0.00 2.29
1994 2004 3.569194 TGTGGAAGTTGTGGCTAGAAA 57.431 42.857 0.00 0.00 0.00 2.52
1995 2005 3.569194 TTGTGGAAGTTGTGGCTAGAA 57.431 42.857 0.00 0.00 0.00 2.10
1996 2006 3.569194 TTTGTGGAAGTTGTGGCTAGA 57.431 42.857 0.00 0.00 0.00 2.43
1997 2007 3.569701 ACATTTGTGGAAGTTGTGGCTAG 59.430 43.478 0.00 0.00 0.00 3.42
1998 2008 3.561143 ACATTTGTGGAAGTTGTGGCTA 58.439 40.909 0.00 0.00 0.00 3.93
1999 2009 2.387757 ACATTTGTGGAAGTTGTGGCT 58.612 42.857 0.00 0.00 0.00 4.75
2000 2010 2.888834 ACATTTGTGGAAGTTGTGGC 57.111 45.000 0.00 0.00 0.00 5.01
2001 2011 7.629130 CAAAATAACATTTGTGGAAGTTGTGG 58.371 34.615 0.00 0.00 35.93 4.17
2013 2023 9.171701 CCAAAATTCAGCACAAAATAACATTTG 57.828 29.630 0.00 0.00 44.11 2.32
2014 2024 8.901793 ACCAAAATTCAGCACAAAATAACATTT 58.098 25.926 0.00 0.00 0.00 2.32
2015 2025 8.449251 ACCAAAATTCAGCACAAAATAACATT 57.551 26.923 0.00 0.00 0.00 2.71
2016 2026 9.723601 ATACCAAAATTCAGCACAAAATAACAT 57.276 25.926 0.00 0.00 0.00 2.71
2017 2027 8.986847 CATACCAAAATTCAGCACAAAATAACA 58.013 29.630 0.00 0.00 0.00 2.41
2018 2028 7.956943 GCATACCAAAATTCAGCACAAAATAAC 59.043 33.333 0.00 0.00 0.00 1.89
2019 2029 7.658982 TGCATACCAAAATTCAGCACAAAATAA 59.341 29.630 0.00 0.00 0.00 1.40
2020 2030 7.157347 TGCATACCAAAATTCAGCACAAAATA 58.843 30.769 0.00 0.00 0.00 1.40
2021 2031 5.996513 TGCATACCAAAATTCAGCACAAAAT 59.003 32.000 0.00 0.00 0.00 1.82
2022 2032 5.363101 TGCATACCAAAATTCAGCACAAAA 58.637 33.333 0.00 0.00 0.00 2.44
2023 2033 4.953667 TGCATACCAAAATTCAGCACAAA 58.046 34.783 0.00 0.00 0.00 2.83
2024 2034 4.597404 TGCATACCAAAATTCAGCACAA 57.403 36.364 0.00 0.00 0.00 3.33
2025 2035 4.220163 TCATGCATACCAAAATTCAGCACA 59.780 37.500 0.00 0.00 32.92 4.57
2026 2036 4.746729 TCATGCATACCAAAATTCAGCAC 58.253 39.130 0.00 0.00 32.92 4.40
2027 2037 5.402997 TTCATGCATACCAAAATTCAGCA 57.597 34.783 0.00 0.00 34.78 4.41
2028 2038 6.724694 TTTTCATGCATACCAAAATTCAGC 57.275 33.333 0.00 0.00 0.00 4.26
2029 2039 8.085720 TGTTTTTCATGCATACCAAAATTCAG 57.914 30.769 0.00 0.00 0.00 3.02
2030 2040 8.618702 ATGTTTTTCATGCATACCAAAATTCA 57.381 26.923 0.00 8.21 35.19 2.57
2031 2041 9.896263 AAATGTTTTTCATGCATACCAAAATTC 57.104 25.926 0.00 3.48 36.81 2.17
2032 2042 9.680315 CAAATGTTTTTCATGCATACCAAAATT 57.320 25.926 0.00 0.00 36.81 1.82
2033 2043 8.848182 ACAAATGTTTTTCATGCATACCAAAAT 58.152 25.926 0.00 0.00 36.81 1.82
2034 2044 8.218338 ACAAATGTTTTTCATGCATACCAAAA 57.782 26.923 0.00 2.61 36.81 2.44
2035 2045 7.496920 TGACAAATGTTTTTCATGCATACCAAA 59.503 29.630 0.00 0.00 36.81 3.28
2036 2046 6.988580 TGACAAATGTTTTTCATGCATACCAA 59.011 30.769 0.00 0.00 36.81 3.67
2037 2047 6.519382 TGACAAATGTTTTTCATGCATACCA 58.481 32.000 0.00 0.00 36.81 3.25
2038 2048 7.418840 TTGACAAATGTTTTTCATGCATACC 57.581 32.000 0.00 0.00 36.81 2.73
2039 2049 8.550376 ACTTTGACAAATGTTTTTCATGCATAC 58.450 29.630 0.00 0.00 36.81 2.39
2040 2050 8.659925 ACTTTGACAAATGTTTTTCATGCATA 57.340 26.923 0.00 0.00 36.81 3.14
2041 2051 7.556733 ACTTTGACAAATGTTTTTCATGCAT 57.443 28.000 0.05 0.00 36.81 3.96
2042 2052 6.981762 ACTTTGACAAATGTTTTTCATGCA 57.018 29.167 0.05 0.00 36.81 3.96
2043 2053 9.209297 GTAAACTTTGACAAATGTTTTTCATGC 57.791 29.630 22.17 8.03 41.39 4.06
2110 2120 9.303116 TCAAATGCTCCCTTATAAACAGTAAAA 57.697 29.630 0.00 0.00 0.00 1.52
2111 2121 8.871629 TCAAATGCTCCCTTATAAACAGTAAA 57.128 30.769 0.00 0.00 0.00 2.01
2112 2122 7.067008 GCTCAAATGCTCCCTTATAAACAGTAA 59.933 37.037 0.00 0.00 0.00 2.24
2113 2123 6.542370 GCTCAAATGCTCCCTTATAAACAGTA 59.458 38.462 0.00 0.00 0.00 2.74
2114 2124 5.358160 GCTCAAATGCTCCCTTATAAACAGT 59.642 40.000 0.00 0.00 0.00 3.55
2115 2125 5.591877 AGCTCAAATGCTCCCTTATAAACAG 59.408 40.000 0.00 0.00 39.34 3.16
2116 2126 5.357878 CAGCTCAAATGCTCCCTTATAAACA 59.642 40.000 0.00 0.00 41.98 2.83
2117 2127 5.221126 CCAGCTCAAATGCTCCCTTATAAAC 60.221 44.000 0.00 0.00 41.98 2.01
2118 2128 4.889409 CCAGCTCAAATGCTCCCTTATAAA 59.111 41.667 0.00 0.00 41.98 1.40
2119 2129 4.464008 CCAGCTCAAATGCTCCCTTATAA 58.536 43.478 0.00 0.00 41.98 0.98
2120 2130 3.181440 CCCAGCTCAAATGCTCCCTTATA 60.181 47.826 0.00 0.00 41.98 0.98
2121 2131 2.423947 CCCAGCTCAAATGCTCCCTTAT 60.424 50.000 0.00 0.00 41.98 1.73
2122 2132 1.064463 CCCAGCTCAAATGCTCCCTTA 60.064 52.381 0.00 0.00 41.98 2.69
2123 2133 0.324091 CCCAGCTCAAATGCTCCCTT 60.324 55.000 0.00 0.00 41.98 3.95
2124 2134 1.210204 TCCCAGCTCAAATGCTCCCT 61.210 55.000 0.00 0.00 41.98 4.20
2125 2135 0.750911 CTCCCAGCTCAAATGCTCCC 60.751 60.000 0.00 0.00 41.98 4.30
2126 2136 0.034670 ACTCCCAGCTCAAATGCTCC 60.035 55.000 0.00 0.00 41.98 4.70
2127 2137 2.169352 TCTACTCCCAGCTCAAATGCTC 59.831 50.000 0.00 0.00 41.98 4.26
2128 2138 2.191400 TCTACTCCCAGCTCAAATGCT 58.809 47.619 0.00 0.00 45.18 3.79
2129 2139 2.698855 TCTACTCCCAGCTCAAATGC 57.301 50.000 0.00 0.00 0.00 3.56
2130 2140 5.070981 TCCTATTCTACTCCCAGCTCAAATG 59.929 44.000 0.00 0.00 0.00 2.32
2131 2141 5.071115 GTCCTATTCTACTCCCAGCTCAAAT 59.929 44.000 0.00 0.00 0.00 2.32
2132 2142 4.406003 GTCCTATTCTACTCCCAGCTCAAA 59.594 45.833 0.00 0.00 0.00 2.69
2133 2143 3.961408 GTCCTATTCTACTCCCAGCTCAA 59.039 47.826 0.00 0.00 0.00 3.02
2134 2144 3.205507 AGTCCTATTCTACTCCCAGCTCA 59.794 47.826 0.00 0.00 0.00 4.26
2135 2145 3.839778 AGTCCTATTCTACTCCCAGCTC 58.160 50.000 0.00 0.00 0.00 4.09
2136 2146 3.983533 AGTCCTATTCTACTCCCAGCT 57.016 47.619 0.00 0.00 0.00 4.24
2137 2147 4.500035 CGAAAGTCCTATTCTACTCCCAGC 60.500 50.000 0.00 0.00 0.00 4.85
2138 2148 4.645588 ACGAAAGTCCTATTCTACTCCCAG 59.354 45.833 0.00 0.00 44.19 4.45
2139 2149 4.607239 ACGAAAGTCCTATTCTACTCCCA 58.393 43.478 0.00 0.00 44.19 4.37
2155 2165 9.393249 TCAGTAAAGCATTCATTTTTACGAAAG 57.607 29.630 0.00 0.00 40.45 2.62
2156 2166 9.906660 ATCAGTAAAGCATTCATTTTTACGAAA 57.093 25.926 0.00 0.00 40.45 3.46
2177 2187 8.413229 GGCAACCATTGTAAACATATTATCAGT 58.587 33.333 0.00 0.00 0.00 3.41
2178 2188 7.591057 CGGCAACCATTGTAAACATATTATCAG 59.409 37.037 0.00 0.00 0.00 2.90
2179 2189 7.067615 ACGGCAACCATTGTAAACATATTATCA 59.932 33.333 0.00 0.00 0.00 2.15
2180 2190 7.422399 ACGGCAACCATTGTAAACATATTATC 58.578 34.615 0.00 0.00 0.00 1.75
2181 2191 7.341445 ACGGCAACCATTGTAAACATATTAT 57.659 32.000 0.00 0.00 0.00 1.28
2182 2192 6.761099 ACGGCAACCATTGTAAACATATTA 57.239 33.333 0.00 0.00 0.00 0.98
2183 2193 5.652994 ACGGCAACCATTGTAAACATATT 57.347 34.783 0.00 0.00 0.00 1.28
2184 2194 6.952773 ATACGGCAACCATTGTAAACATAT 57.047 33.333 0.00 0.00 0.00 1.78
2185 2195 6.018913 CGTATACGGCAACCATTGTAAACATA 60.019 38.462 17.61 0.00 35.37 2.29
2186 2196 5.220700 CGTATACGGCAACCATTGTAAACAT 60.221 40.000 17.61 0.00 35.37 2.71
2187 2197 4.093115 CGTATACGGCAACCATTGTAAACA 59.907 41.667 17.61 0.00 35.37 2.83
2188 2198 4.329528 TCGTATACGGCAACCATTGTAAAC 59.670 41.667 24.18 0.00 40.29 2.01
2189 2199 4.502016 TCGTATACGGCAACCATTGTAAA 58.498 39.130 24.18 0.00 40.29 2.01
2190 2200 4.120792 TCGTATACGGCAACCATTGTAA 57.879 40.909 24.18 0.00 40.29 2.41
2191 2201 3.797451 TCGTATACGGCAACCATTGTA 57.203 42.857 24.18 0.00 40.29 2.41
2192 2202 2.676632 TCGTATACGGCAACCATTGT 57.323 45.000 24.18 0.00 40.29 2.71
2193 2203 4.052608 TGTATCGTATACGGCAACCATTG 58.947 43.478 24.18 0.00 40.29 2.82
2194 2204 4.053295 GTGTATCGTATACGGCAACCATT 58.947 43.478 24.18 3.49 40.29 3.16
2195 2205 3.645884 GTGTATCGTATACGGCAACCAT 58.354 45.455 24.18 12.00 40.29 3.55
2196 2206 2.541383 CGTGTATCGTATACGGCAACCA 60.541 50.000 24.18 11.57 39.23 3.67
2197 2207 2.046313 CGTGTATCGTATACGGCAACC 58.954 52.381 24.18 9.66 39.23 3.77
2198 2208 2.985751 TCGTGTATCGTATACGGCAAC 58.014 47.619 24.18 18.56 42.47 4.17
2199 2209 3.902261 ATCGTGTATCGTATACGGCAA 57.098 42.857 24.18 6.52 42.47 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.