Multiple sequence alignment - TraesCS3D01G446500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G446500 chr3D 100.000 3141 0 0 1 3141 555307006 555303866 0.000000e+00 5801.0
1 TraesCS3D01G446500 chr3D 83.594 1408 212 16 783 2183 559120103 559121498 0.000000e+00 1303.0
2 TraesCS3D01G446500 chr3D 79.637 1709 253 70 788 2476 555314593 555312960 0.000000e+00 1140.0
3 TraesCS3D01G446500 chr3D 77.967 1348 233 41 853 2183 555144684 555143384 0.000000e+00 785.0
4 TraesCS3D01G446500 chr3D 91.384 383 26 3 1 377 488105596 488105215 4.640000e-143 518.0
5 TraesCS3D01G446500 chr3D 91.316 380 28 3 1 376 459493881 459493503 6.010000e-142 514.0
6 TraesCS3D01G446500 chr3D 91.053 380 29 3 1 377 175255555 175255178 2.790000e-140 508.0
7 TraesCS3D01G446500 chr3D 87.660 235 28 1 1740 1973 555119937 555119703 3.990000e-69 272.0
8 TraesCS3D01G446500 chr3D 95.000 40 2 0 2989 3028 555117019 555116980 2.620000e-06 63.9
9 TraesCS3D01G446500 chr3D 88.462 52 5 1 2412 2463 559121818 559121868 9.410000e-06 62.1
10 TraesCS3D01G446500 chr3A 94.065 2342 97 10 708 3029 692058122 692055803 0.000000e+00 3517.0
11 TraesCS3D01G446500 chr3A 91.911 2287 135 24 769 3029 692471979 692469717 0.000000e+00 3153.0
12 TraesCS3D01G446500 chr3A 91.068 2295 152 20 755 3029 692316382 692314121 0.000000e+00 3053.0
13 TraesCS3D01G446500 chr3A 82.882 1402 210 21 788 2183 695515128 695516505 0.000000e+00 1232.0
14 TraesCS3D01G446500 chr3A 79.986 1414 213 45 848 2253 692495402 692494051 0.000000e+00 979.0
15 TraesCS3D01G446500 chr3A 80.392 816 123 26 1080 1889 692489803 692489019 1.260000e-163 586.0
16 TraesCS3D01G446500 chr3A 72.163 934 208 35 1217 2140 691837490 691836599 1.460000e-58 237.0
17 TraesCS3D01G446500 chr3A 91.743 109 9 0 3025 3133 692314055 692313947 5.430000e-33 152.0
18 TraesCS3D01G446500 chr3A 78.571 182 18 14 2763 2925 691958104 691957925 1.990000e-17 100.0
19 TraesCS3D01G446500 chr3A 96.364 55 2 0 508 562 637466281 637466335 1.200000e-14 91.6
20 TraesCS3D01G446500 chr3A 88.462 52 5 1 2412 2463 695516740 695516790 9.410000e-06 62.1
21 TraesCS3D01G446500 chr3B 89.069 2406 191 23 648 3029 738290029 738287672 0.000000e+00 2920.0
22 TraesCS3D01G446500 chr3B 80.772 1399 202 41 853 2241 738625870 738624529 0.000000e+00 1031.0
23 TraesCS3D01G446500 chr3B 78.354 1677 262 67 788 2447 738591894 738590302 0.000000e+00 992.0
24 TraesCS3D01G446500 chr3B 78.116 1348 237 36 851 2183 738156532 738155228 0.000000e+00 802.0
25 TraesCS3D01G446500 chr3B 90.811 185 15 2 378 561 716243831 716243648 2.420000e-61 246.0
26 TraesCS3D01G446500 chr3B 97.500 40 1 0 2989 3028 738140581 738140542 5.620000e-08 69.4
27 TraesCS3D01G446500 chr3B 84.483 58 8 1 2412 2469 741966575 741966519 4.380000e-04 56.5
28 TraesCS3D01G446500 chr3B 85.455 55 7 1 2412 2466 742108781 742108728 4.380000e-04 56.5
29 TraesCS3D01G446500 chr2D 91.316 380 28 3 1 377 42765901 42766278 6.010000e-142 514.0
30 TraesCS3D01G446500 chr2D 90.805 87 8 0 563 649 184845560 184845474 1.980000e-22 117.0
31 TraesCS3D01G446500 chr1D 91.534 378 25 5 4 377 308447002 308447376 6.010000e-142 514.0
32 TraesCS3D01G446500 chr1D 93.103 87 6 0 563 649 308447369 308447455 9.140000e-26 128.0
33 TraesCS3D01G446500 chr1D 88.660 97 8 2 563 659 473346975 473346882 7.120000e-22 115.0
34 TraesCS3D01G446500 chr5D 90.476 378 30 4 1 377 41123513 41123885 7.830000e-136 494.0
35 TraesCS3D01G446500 chr5D 89.717 389 31 6 2 384 255562371 255561986 3.640000e-134 488.0
36 TraesCS3D01G446500 chr5D 91.489 94 7 1 563 655 481124565 481124472 9.140000e-26 128.0
37 TraesCS3D01G446500 chr5B 90.155 386 24 9 1 377 633297935 633298315 1.010000e-134 490.0
38 TraesCS3D01G446500 chrUn 74.812 1195 244 30 1023 2198 45269410 45270566 1.310000e-133 486.0
39 TraesCS3D01G446500 chr1A 89.474 380 36 3 1 377 354833000 354833378 7.880000e-131 477.0
40 TraesCS3D01G446500 chr5A 92.973 185 10 2 378 561 413229338 413229156 1.860000e-67 267.0
41 TraesCS3D01G446500 chr6D 89.637 193 13 3 376 561 8648116 8647924 4.050000e-59 239.0
42 TraesCS3D01G446500 chr6D 90.805 87 8 0 563 649 37423227 37423313 1.980000e-22 117.0
43 TraesCS3D01G446500 chr7D 94.253 87 5 0 563 649 382527431 382527345 1.970000e-27 134.0
44 TraesCS3D01G446500 chr7D 93.103 87 6 0 563 649 448967239 448967325 9.140000e-26 128.0
45 TraesCS3D01G446500 chr7D 91.954 87 7 0 563 649 603805432 603805346 4.250000e-24 122.0
46 TraesCS3D01G446500 chr7D 95.588 68 3 0 494 561 185301736 185301669 3.310000e-20 110.0
47 TraesCS3D01G446500 chr7D 89.024 82 9 0 378 459 185302148 185302067 5.540000e-18 102.0
48 TraesCS3D01G446500 chr6B 90.110 91 9 0 563 653 545609406 545609496 5.500000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G446500 chr3D 555303866 555307006 3140 True 5801.00 5801 100.0000 1 3141 1 chr3D.!!$R5 3140
1 TraesCS3D01G446500 chr3D 555312960 555314593 1633 True 1140.00 1140 79.6370 788 2476 1 chr3D.!!$R6 1688
2 TraesCS3D01G446500 chr3D 555143384 555144684 1300 True 785.00 785 77.9670 853 2183 1 chr3D.!!$R4 1330
3 TraesCS3D01G446500 chr3D 559120103 559121868 1765 False 682.55 1303 86.0280 783 2463 2 chr3D.!!$F1 1680
4 TraesCS3D01G446500 chr3A 692055803 692058122 2319 True 3517.00 3517 94.0650 708 3029 1 chr3A.!!$R3 2321
5 TraesCS3D01G446500 chr3A 692469717 692471979 2262 True 3153.00 3153 91.9110 769 3029 1 chr3A.!!$R4 2260
6 TraesCS3D01G446500 chr3A 692313947 692316382 2435 True 1602.50 3053 91.4055 755 3133 2 chr3A.!!$R7 2378
7 TraesCS3D01G446500 chr3A 692494051 692495402 1351 True 979.00 979 79.9860 848 2253 1 chr3A.!!$R6 1405
8 TraesCS3D01G446500 chr3A 695515128 695516790 1662 False 647.05 1232 85.6720 788 2463 2 chr3A.!!$F2 1675
9 TraesCS3D01G446500 chr3A 692489019 692489803 784 True 586.00 586 80.3920 1080 1889 1 chr3A.!!$R5 809
10 TraesCS3D01G446500 chr3A 691836599 691837490 891 True 237.00 237 72.1630 1217 2140 1 chr3A.!!$R1 923
11 TraesCS3D01G446500 chr3B 738287672 738290029 2357 True 2920.00 2920 89.0690 648 3029 1 chr3B.!!$R4 2381
12 TraesCS3D01G446500 chr3B 738624529 738625870 1341 True 1031.00 1031 80.7720 853 2241 1 chr3B.!!$R6 1388
13 TraesCS3D01G446500 chr3B 738590302 738591894 1592 True 992.00 992 78.3540 788 2447 1 chr3B.!!$R5 1659
14 TraesCS3D01G446500 chr3B 738155228 738156532 1304 True 802.00 802 78.1160 851 2183 1 chr3B.!!$R3 1332
15 TraesCS3D01G446500 chrUn 45269410 45270566 1156 False 486.00 486 74.8120 1023 2198 1 chrUn.!!$F1 1175

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.027979 CATCCCAAATACACAGCGCG 59.972 55.0 0.0 0.0 0.0 6.86 F
423 424 0.035439 CGGGCTGGGAAGTGTTACAT 60.035 55.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1402 1436 1.339727 GGCACGGTTACCCATTTCTCT 60.340 52.381 0.0 0.0 0.0 3.10 R
2329 2387 1.203523 TGGCCACTTGAACACAAACAC 59.796 47.619 0.0 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.899239 CCCGCTGCCGAGGTCATC 62.899 72.222 0.00 0.00 36.29 2.92
34 35 3.842923 CCGCTGCCGAGGTCATCT 61.843 66.667 0.00 0.00 36.29 2.90
35 36 2.584418 CGCTGCCGAGGTCATCTG 60.584 66.667 0.00 0.00 36.29 2.90
36 37 2.894387 GCTGCCGAGGTCATCTGC 60.894 66.667 0.00 0.00 38.54 4.26
37 38 2.584418 CTGCCGAGGTCATCTGCG 60.584 66.667 0.00 0.00 40.76 5.18
38 39 4.147449 TGCCGAGGTCATCTGCGG 62.147 66.667 0.00 0.00 46.14 5.69
149 150 4.489771 GGCGGTGGAGGGGTCATG 62.490 72.222 0.00 0.00 0.00 3.07
150 151 4.489771 GCGGTGGAGGGGTCATGG 62.490 72.222 0.00 0.00 0.00 3.66
151 152 4.489771 CGGTGGAGGGGTCATGGC 62.490 72.222 0.00 0.00 0.00 4.40
152 153 3.017581 GGTGGAGGGGTCATGGCT 61.018 66.667 0.00 0.00 0.00 4.75
153 154 2.273449 GTGGAGGGGTCATGGCTG 59.727 66.667 0.00 0.00 0.00 4.85
154 155 2.204136 TGGAGGGGTCATGGCTGT 60.204 61.111 0.00 0.00 0.00 4.40
155 156 1.082019 TGGAGGGGTCATGGCTGTA 59.918 57.895 0.00 0.00 0.00 2.74
156 157 0.982852 TGGAGGGGTCATGGCTGTAG 60.983 60.000 0.00 0.00 0.00 2.74
157 158 1.700042 GGAGGGGTCATGGCTGTAGG 61.700 65.000 0.00 0.00 0.00 3.18
158 159 0.691078 GAGGGGTCATGGCTGTAGGA 60.691 60.000 0.00 0.00 0.00 2.94
159 160 0.029681 AGGGGTCATGGCTGTAGGAT 60.030 55.000 0.00 0.00 0.00 3.24
160 161 0.109342 GGGGTCATGGCTGTAGGATG 59.891 60.000 0.00 0.00 0.00 3.51
161 162 0.109342 GGGTCATGGCTGTAGGATGG 59.891 60.000 0.00 0.00 0.00 3.51
162 163 0.109342 GGTCATGGCTGTAGGATGGG 59.891 60.000 0.00 0.00 0.00 4.00
163 164 0.109342 GTCATGGCTGTAGGATGGGG 59.891 60.000 0.00 0.00 0.00 4.96
164 165 0.327480 TCATGGCTGTAGGATGGGGT 60.327 55.000 0.00 0.00 0.00 4.95
165 166 0.179009 CATGGCTGTAGGATGGGGTG 60.179 60.000 0.00 0.00 0.00 4.61
166 167 0.327480 ATGGCTGTAGGATGGGGTGA 60.327 55.000 0.00 0.00 0.00 4.02
167 168 0.982852 TGGCTGTAGGATGGGGTGAG 60.983 60.000 0.00 0.00 0.00 3.51
168 169 1.700042 GGCTGTAGGATGGGGTGAGG 61.700 65.000 0.00 0.00 0.00 3.86
169 170 1.700042 GCTGTAGGATGGGGTGAGGG 61.700 65.000 0.00 0.00 0.00 4.30
170 171 1.004230 TGTAGGATGGGGTGAGGGG 59.996 63.158 0.00 0.00 0.00 4.79
171 172 1.770518 GTAGGATGGGGTGAGGGGG 60.771 68.421 0.00 0.00 0.00 5.40
193 194 4.444024 CGGTGCGTGCGTCCATTG 62.444 66.667 6.67 0.00 0.00 2.82
194 195 4.101790 GGTGCGTGCGTCCATTGG 62.102 66.667 0.00 0.00 0.00 3.16
195 196 4.101790 GTGCGTGCGTCCATTGGG 62.102 66.667 2.09 0.00 0.00 4.12
196 197 4.634703 TGCGTGCGTCCATTGGGT 62.635 61.111 2.09 0.00 34.93 4.51
197 198 3.799755 GCGTGCGTCCATTGGGTC 61.800 66.667 2.09 0.00 34.93 4.46
198 199 3.124921 CGTGCGTCCATTGGGTCC 61.125 66.667 2.09 0.00 34.93 4.46
199 200 2.033448 GTGCGTCCATTGGGTCCA 59.967 61.111 2.09 0.00 34.93 4.02
200 201 2.040544 GTGCGTCCATTGGGTCCAG 61.041 63.158 2.09 0.00 34.93 3.86
201 202 2.351276 GCGTCCATTGGGTCCAGT 59.649 61.111 2.09 0.00 34.93 4.00
202 203 1.303317 GCGTCCATTGGGTCCAGTT 60.303 57.895 2.09 0.00 34.93 3.16
203 204 1.305930 GCGTCCATTGGGTCCAGTTC 61.306 60.000 2.09 0.00 34.93 3.01
204 205 1.019278 CGTCCATTGGGTCCAGTTCG 61.019 60.000 2.09 0.00 34.93 3.95
205 206 1.002624 TCCATTGGGTCCAGTTCGC 60.003 57.895 2.09 0.00 34.93 4.70
206 207 2.046285 CCATTGGGTCCAGTTCGCC 61.046 63.158 0.00 0.00 0.00 5.54
207 208 2.046314 ATTGGGTCCAGTTCGCCG 60.046 61.111 0.00 0.00 0.00 6.46
208 209 3.622060 ATTGGGTCCAGTTCGCCGG 62.622 63.158 0.00 0.00 0.00 6.13
243 244 2.736995 CGAAGGTGGCGCGAAGAA 60.737 61.111 12.10 0.00 0.00 2.52
244 245 2.730672 CGAAGGTGGCGCGAAGAAG 61.731 63.158 12.10 0.00 0.00 2.85
245 246 1.374252 GAAGGTGGCGCGAAGAAGA 60.374 57.895 12.10 0.00 0.00 2.87
246 247 1.355066 GAAGGTGGCGCGAAGAAGAG 61.355 60.000 12.10 0.00 0.00 2.85
247 248 1.816863 AAGGTGGCGCGAAGAAGAGA 61.817 55.000 12.10 0.00 0.00 3.10
248 249 1.807573 GGTGGCGCGAAGAAGAGAG 60.808 63.158 12.10 0.00 0.00 3.20
249 250 1.080434 GTGGCGCGAAGAAGAGAGT 60.080 57.895 12.10 0.00 0.00 3.24
250 251 1.080501 TGGCGCGAAGAAGAGAGTG 60.081 57.895 12.10 0.00 0.00 3.51
251 252 2.448705 GGCGCGAAGAAGAGAGTGC 61.449 63.158 12.10 0.00 39.16 4.40
252 253 3.368040 CGCGAAGAAGAGAGTGCG 58.632 61.111 0.00 0.00 39.57 5.34
253 254 2.155194 CGCGAAGAAGAGAGTGCGG 61.155 63.158 0.00 0.00 41.69 5.69
254 255 2.448705 GCGAAGAAGAGAGTGCGGC 61.449 63.158 0.00 0.00 0.00 6.53
255 256 2.155194 CGAAGAAGAGAGTGCGGCG 61.155 63.158 0.51 0.51 0.00 6.46
256 257 2.433318 AAGAAGAGAGTGCGGCGC 60.433 61.111 27.44 27.44 0.00 6.53
257 258 4.785512 AGAAGAGAGTGCGGCGCG 62.786 66.667 28.09 0.00 0.00 6.86
258 259 4.778415 GAAGAGAGTGCGGCGCGA 62.778 66.667 28.09 13.73 0.00 5.87
259 260 4.785512 AAGAGAGTGCGGCGCGAG 62.786 66.667 28.09 3.39 0.00 5.03
296 297 4.794648 CGGAAGCGGGCATCCCAA 62.795 66.667 9.14 0.00 45.83 4.12
297 298 2.362375 GGAAGCGGGCATCCCAAA 60.362 61.111 3.60 0.00 45.83 3.28
298 299 1.758122 GGAAGCGGGCATCCCAAAT 60.758 57.895 3.60 0.00 45.83 2.32
299 300 0.467290 GGAAGCGGGCATCCCAAATA 60.467 55.000 3.60 0.00 45.83 1.40
300 301 0.668535 GAAGCGGGCATCCCAAATAC 59.331 55.000 2.47 0.00 45.83 1.89
301 302 0.033601 AAGCGGGCATCCCAAATACA 60.034 50.000 2.47 0.00 45.83 2.29
302 303 0.751643 AGCGGGCATCCCAAATACAC 60.752 55.000 2.47 0.00 45.83 2.90
303 304 1.034838 GCGGGCATCCCAAATACACA 61.035 55.000 2.47 0.00 45.83 3.72
304 305 1.024271 CGGGCATCCCAAATACACAG 58.976 55.000 2.47 0.00 45.83 3.66
305 306 0.746659 GGGCATCCCAAATACACAGC 59.253 55.000 0.00 0.00 44.65 4.40
306 307 0.381801 GGCATCCCAAATACACAGCG 59.618 55.000 0.00 0.00 0.00 5.18
307 308 0.248621 GCATCCCAAATACACAGCGC 60.249 55.000 0.00 0.00 0.00 5.92
308 309 0.027979 CATCCCAAATACACAGCGCG 59.972 55.000 0.00 0.00 0.00 6.86
309 310 1.714899 ATCCCAAATACACAGCGCGC 61.715 55.000 26.66 26.66 0.00 6.86
310 311 2.276617 CCAAATACACAGCGCGCG 60.277 61.111 28.44 28.44 0.00 6.86
311 312 2.474266 CAAATACACAGCGCGCGT 59.526 55.556 32.35 23.12 0.00 6.01
312 313 1.154488 CAAATACACAGCGCGCGTT 60.154 52.632 32.35 24.65 0.00 4.84
313 314 1.154488 AAATACACAGCGCGCGTTG 60.154 52.632 38.98 38.98 0.00 4.10
314 315 2.507322 AAATACACAGCGCGCGTTGG 62.507 55.000 41.65 32.71 0.00 3.77
325 326 2.178273 GCGTTGGCGATTTGGACC 59.822 61.111 0.00 0.00 41.33 4.46
326 327 2.478746 CGTTGGCGATTTGGACCG 59.521 61.111 0.00 0.00 41.33 4.79
334 335 4.460683 ATTTGGACCGCGCGCCTA 62.461 61.111 27.36 15.62 0.00 3.93
335 336 3.961838 ATTTGGACCGCGCGCCTAA 62.962 57.895 27.36 23.31 0.00 2.69
336 337 3.961838 TTTGGACCGCGCGCCTAAT 62.962 57.895 27.36 8.30 0.00 1.73
337 338 3.961838 TTGGACCGCGCGCCTAATT 62.962 57.895 27.36 4.70 0.00 1.40
338 339 3.637030 GGACCGCGCGCCTAATTC 61.637 66.667 27.36 14.04 0.00 2.17
339 340 2.585247 GACCGCGCGCCTAATTCT 60.585 61.111 27.36 0.00 0.00 2.40
340 341 1.299620 GACCGCGCGCCTAATTCTA 60.300 57.895 27.36 0.00 0.00 2.10
341 342 0.666577 GACCGCGCGCCTAATTCTAT 60.667 55.000 27.36 0.00 0.00 1.98
342 343 0.599558 ACCGCGCGCCTAATTCTATA 59.400 50.000 27.36 0.00 0.00 1.31
343 344 1.203994 ACCGCGCGCCTAATTCTATAT 59.796 47.619 27.36 0.00 0.00 0.86
344 345 2.268298 CCGCGCGCCTAATTCTATATT 58.732 47.619 27.36 0.00 0.00 1.28
345 346 2.029244 CCGCGCGCCTAATTCTATATTG 59.971 50.000 27.36 5.63 0.00 1.90
346 347 2.534939 CGCGCGCCTAATTCTATATTGC 60.535 50.000 27.72 0.00 0.00 3.56
347 348 2.223044 GCGCGCCTAATTCTATATTGCC 60.223 50.000 23.24 0.00 0.00 4.52
348 349 2.029244 CGCGCCTAATTCTATATTGCCG 59.971 50.000 0.00 0.00 0.00 5.69
349 350 2.223044 GCGCCTAATTCTATATTGCCGC 60.223 50.000 0.00 0.00 0.00 6.53
350 351 2.029244 CGCCTAATTCTATATTGCCGCG 59.971 50.000 0.00 0.00 0.00 6.46
351 352 2.223044 GCCTAATTCTATATTGCCGCGC 60.223 50.000 0.00 0.00 0.00 6.86
352 353 2.029244 CCTAATTCTATATTGCCGCGCG 59.971 50.000 25.67 25.67 0.00 6.86
353 354 0.165944 AATTCTATATTGCCGCGCGC 59.834 50.000 27.36 23.91 38.31 6.86
354 355 1.955529 ATTCTATATTGCCGCGCGCG 61.956 55.000 43.73 43.73 42.08 6.86
355 356 3.403057 CTATATTGCCGCGCGCGT 61.403 61.111 45.51 32.31 42.08 6.01
356 357 2.938823 CTATATTGCCGCGCGCGTT 61.939 57.895 45.51 30.46 42.08 4.84
357 358 1.610715 CTATATTGCCGCGCGCGTTA 61.611 55.000 45.51 33.09 42.08 3.18
358 359 1.009903 TATATTGCCGCGCGCGTTAT 61.010 50.000 45.51 35.04 42.08 1.89
359 360 1.837538 ATATTGCCGCGCGCGTTATT 61.838 50.000 45.51 31.08 42.08 1.40
360 361 2.688046 TATTGCCGCGCGCGTTATTG 62.688 55.000 45.51 32.72 42.08 1.90
362 363 4.919868 GCCGCGCGCGTTATTGAG 62.920 66.667 45.51 31.33 37.81 3.02
363 364 4.919868 CCGCGCGCGTTATTGAGC 62.920 66.667 45.51 10.82 37.81 4.26
369 370 4.591317 GCGTTATTGAGCGCCCGC 62.591 66.667 2.29 4.20 46.93 6.13
383 384 4.767255 CCGCTGGAGCCGAGCTTT 62.767 66.667 7.40 0.00 39.88 3.51
384 385 3.494336 CGCTGGAGCCGAGCTTTG 61.494 66.667 7.40 0.00 39.88 2.77
385 386 3.808656 GCTGGAGCCGAGCTTTGC 61.809 66.667 0.00 0.42 39.88 3.68
386 387 2.046507 CTGGAGCCGAGCTTTGCT 60.047 61.111 10.36 10.36 39.88 3.91
387 388 1.219124 CTGGAGCCGAGCTTTGCTA 59.781 57.895 10.52 0.00 39.88 3.49
388 389 1.079127 TGGAGCCGAGCTTTGCTAC 60.079 57.895 12.48 12.48 39.88 3.58
389 390 1.079127 GGAGCCGAGCTTTGCTACA 60.079 57.895 14.06 0.00 39.88 2.74
390 391 0.462759 GGAGCCGAGCTTTGCTACAT 60.463 55.000 14.06 0.00 39.88 2.29
391 392 0.933796 GAGCCGAGCTTTGCTACATC 59.066 55.000 10.52 0.00 39.88 3.06
392 393 0.250234 AGCCGAGCTTTGCTACATCA 59.750 50.000 8.98 0.00 39.88 3.07
393 394 1.086696 GCCGAGCTTTGCTACATCAA 58.913 50.000 0.00 0.00 39.88 2.57
394 395 1.202076 GCCGAGCTTTGCTACATCAAC 60.202 52.381 0.00 0.00 39.88 3.18
395 396 2.076100 CCGAGCTTTGCTACATCAACA 58.924 47.619 0.00 0.00 39.88 3.33
396 397 2.483877 CCGAGCTTTGCTACATCAACAA 59.516 45.455 0.00 0.00 39.88 2.83
397 398 3.058293 CCGAGCTTTGCTACATCAACAAA 60.058 43.478 0.00 0.00 39.88 2.83
398 399 3.908382 CGAGCTTTGCTACATCAACAAAC 59.092 43.478 0.00 0.00 39.88 2.93
399 400 3.888934 AGCTTTGCTACATCAACAAACG 58.111 40.909 0.00 0.00 36.99 3.60
400 401 3.563808 AGCTTTGCTACATCAACAAACGA 59.436 39.130 0.00 0.00 36.99 3.85
401 402 4.216257 AGCTTTGCTACATCAACAAACGAT 59.784 37.500 0.00 0.00 36.99 3.73
402 403 4.917415 GCTTTGCTACATCAACAAACGATT 59.083 37.500 0.00 0.00 0.00 3.34
403 404 6.072728 AGCTTTGCTACATCAACAAACGATTA 60.073 34.615 0.00 0.00 36.99 1.75
404 405 6.032460 GCTTTGCTACATCAACAAACGATTAC 59.968 38.462 0.00 0.00 0.00 1.89
405 406 5.198116 TGCTACATCAACAAACGATTACG 57.802 39.130 0.00 0.00 45.75 3.18
406 407 4.092237 TGCTACATCAACAAACGATTACGG 59.908 41.667 0.00 0.00 44.46 4.02
407 408 4.493545 GCTACATCAACAAACGATTACGGG 60.494 45.833 0.00 0.00 44.46 5.28
408 409 2.160813 ACATCAACAAACGATTACGGGC 59.839 45.455 0.00 0.00 44.46 6.13
409 410 2.172851 TCAACAAACGATTACGGGCT 57.827 45.000 0.00 0.00 44.46 5.19
410 411 1.801771 TCAACAAACGATTACGGGCTG 59.198 47.619 0.00 0.00 44.46 4.85
411 412 1.135803 CAACAAACGATTACGGGCTGG 60.136 52.381 0.00 0.00 44.46 4.85
412 413 0.675522 ACAAACGATTACGGGCTGGG 60.676 55.000 0.00 0.00 44.46 4.45
413 414 0.391927 CAAACGATTACGGGCTGGGA 60.392 55.000 0.00 0.00 44.46 4.37
414 415 0.325602 AAACGATTACGGGCTGGGAA 59.674 50.000 0.00 0.00 44.46 3.97
415 416 0.107848 AACGATTACGGGCTGGGAAG 60.108 55.000 0.00 0.00 44.46 3.46
416 417 1.262640 ACGATTACGGGCTGGGAAGT 61.263 55.000 0.00 0.00 44.46 3.01
417 418 0.810031 CGATTACGGGCTGGGAAGTG 60.810 60.000 0.00 0.00 35.72 3.16
418 419 0.252197 GATTACGGGCTGGGAAGTGT 59.748 55.000 0.00 0.00 0.00 3.55
419 420 0.696501 ATTACGGGCTGGGAAGTGTT 59.303 50.000 0.00 0.00 0.00 3.32
420 421 1.350071 TTACGGGCTGGGAAGTGTTA 58.650 50.000 0.00 0.00 0.00 2.41
421 422 0.609662 TACGGGCTGGGAAGTGTTAC 59.390 55.000 0.00 0.00 0.00 2.50
422 423 1.373435 CGGGCTGGGAAGTGTTACA 59.627 57.895 0.00 0.00 0.00 2.41
423 424 0.035439 CGGGCTGGGAAGTGTTACAT 60.035 55.000 0.00 0.00 0.00 2.29
424 425 1.463674 GGGCTGGGAAGTGTTACATG 58.536 55.000 0.00 0.00 0.00 3.21
425 426 1.463674 GGCTGGGAAGTGTTACATGG 58.536 55.000 0.00 0.00 0.00 3.66
426 427 1.271926 GGCTGGGAAGTGTTACATGGT 60.272 52.381 0.00 0.00 0.00 3.55
427 428 1.812571 GCTGGGAAGTGTTACATGGTG 59.187 52.381 0.00 0.00 0.00 4.17
428 429 2.552155 GCTGGGAAGTGTTACATGGTGA 60.552 50.000 0.00 0.00 0.00 4.02
429 430 3.873801 GCTGGGAAGTGTTACATGGTGAT 60.874 47.826 0.00 0.00 0.00 3.06
430 431 4.335416 CTGGGAAGTGTTACATGGTGATT 58.665 43.478 0.00 0.00 0.00 2.57
431 432 5.496556 CTGGGAAGTGTTACATGGTGATTA 58.503 41.667 0.00 0.00 0.00 1.75
432 433 5.496556 TGGGAAGTGTTACATGGTGATTAG 58.503 41.667 0.00 0.00 0.00 1.73
433 434 5.013704 TGGGAAGTGTTACATGGTGATTAGT 59.986 40.000 0.00 0.00 0.00 2.24
434 435 5.585047 GGGAAGTGTTACATGGTGATTAGTC 59.415 44.000 0.00 0.00 0.00 2.59
435 436 6.170506 GGAAGTGTTACATGGTGATTAGTCA 58.829 40.000 0.00 0.00 0.00 3.41
436 437 6.313905 GGAAGTGTTACATGGTGATTAGTCAG 59.686 42.308 0.00 0.00 34.36 3.51
437 438 6.360370 AGTGTTACATGGTGATTAGTCAGT 57.640 37.500 0.00 0.00 34.36 3.41
438 439 6.769512 AGTGTTACATGGTGATTAGTCAGTT 58.230 36.000 0.00 0.00 34.36 3.16
439 440 7.224297 AGTGTTACATGGTGATTAGTCAGTTT 58.776 34.615 0.00 0.00 34.36 2.66
440 441 7.719633 AGTGTTACATGGTGATTAGTCAGTTTT 59.280 33.333 0.00 0.00 34.36 2.43
441 442 8.349983 GTGTTACATGGTGATTAGTCAGTTTTT 58.650 33.333 0.00 0.00 34.36 1.94
442 443 9.562408 TGTTACATGGTGATTAGTCAGTTTTTA 57.438 29.630 0.00 0.00 34.36 1.52
446 447 9.912634 ACATGGTGATTAGTCAGTTTTTAATTG 57.087 29.630 0.00 0.00 34.36 2.32
450 451 9.626045 GGTGATTAGTCAGTTTTTAATTGAAGG 57.374 33.333 0.00 0.00 34.36 3.46
456 457 8.178313 AGTCAGTTTTTAATTGAAGGTTAGGG 57.822 34.615 0.00 0.00 0.00 3.53
457 458 7.232737 AGTCAGTTTTTAATTGAAGGTTAGGGG 59.767 37.037 0.00 0.00 0.00 4.79
458 459 6.495526 TCAGTTTTTAATTGAAGGTTAGGGGG 59.504 38.462 0.00 0.00 0.00 5.40
459 460 6.495526 CAGTTTTTAATTGAAGGTTAGGGGGA 59.504 38.462 0.00 0.00 0.00 4.81
460 461 6.495872 AGTTTTTAATTGAAGGTTAGGGGGAC 59.504 38.462 0.00 0.00 0.00 4.46
461 462 2.801077 AATTGAAGGTTAGGGGGACG 57.199 50.000 0.00 0.00 0.00 4.79
462 463 0.255033 ATTGAAGGTTAGGGGGACGC 59.745 55.000 0.00 0.00 43.76 5.19
481 482 2.200092 GGCCCACCCACCTGAAAA 59.800 61.111 0.00 0.00 0.00 2.29
482 483 1.229177 GGCCCACCCACCTGAAAAT 60.229 57.895 0.00 0.00 0.00 1.82
483 484 1.257750 GGCCCACCCACCTGAAAATC 61.258 60.000 0.00 0.00 0.00 2.17
484 485 0.541764 GCCCACCCACCTGAAAATCA 60.542 55.000 0.00 0.00 0.00 2.57
485 486 1.549203 CCCACCCACCTGAAAATCAG 58.451 55.000 0.32 0.32 43.91 2.90
486 487 1.203050 CCCACCCACCTGAAAATCAGT 60.203 52.381 6.62 0.00 42.80 3.41
487 488 1.888512 CCACCCACCTGAAAATCAGTG 59.111 52.381 6.62 5.21 42.80 3.66
488 489 1.888512 CACCCACCTGAAAATCAGTGG 59.111 52.381 15.85 15.85 42.80 4.00
490 491 1.549203 CCACCTGAAAATCAGTGGGG 58.451 55.000 15.36 10.16 42.80 4.96
491 492 1.075374 CCACCTGAAAATCAGTGGGGA 59.925 52.381 15.36 0.00 42.80 4.81
492 493 2.440409 CACCTGAAAATCAGTGGGGAG 58.560 52.381 6.62 0.00 42.80 4.30
493 494 1.355720 ACCTGAAAATCAGTGGGGAGG 59.644 52.381 6.62 0.00 42.80 4.30
494 495 1.341383 CCTGAAAATCAGTGGGGAGGG 60.341 57.143 6.62 0.00 42.80 4.30
495 496 0.704076 TGAAAATCAGTGGGGAGGGG 59.296 55.000 0.00 0.00 0.00 4.79
496 497 0.684479 GAAAATCAGTGGGGAGGGGC 60.684 60.000 0.00 0.00 0.00 5.80
497 498 1.442886 AAAATCAGTGGGGAGGGGCA 61.443 55.000 0.00 0.00 0.00 5.36
498 499 1.224003 AAATCAGTGGGGAGGGGCAT 61.224 55.000 0.00 0.00 0.00 4.40
499 500 0.328450 AATCAGTGGGGAGGGGCATA 60.328 55.000 0.00 0.00 0.00 3.14
500 501 0.103715 ATCAGTGGGGAGGGGCATAT 60.104 55.000 0.00 0.00 0.00 1.78
501 502 0.328450 TCAGTGGGGAGGGGCATATT 60.328 55.000 0.00 0.00 0.00 1.28
502 503 0.557729 CAGTGGGGAGGGGCATATTT 59.442 55.000 0.00 0.00 0.00 1.40
503 504 1.780309 CAGTGGGGAGGGGCATATTTA 59.220 52.381 0.00 0.00 0.00 1.40
504 505 2.065799 AGTGGGGAGGGGCATATTTAG 58.934 52.381 0.00 0.00 0.00 1.85
505 506 1.780919 GTGGGGAGGGGCATATTTAGT 59.219 52.381 0.00 0.00 0.00 2.24
506 507 2.177016 GTGGGGAGGGGCATATTTAGTT 59.823 50.000 0.00 0.00 0.00 2.24
507 508 3.396611 GTGGGGAGGGGCATATTTAGTTA 59.603 47.826 0.00 0.00 0.00 2.24
508 509 3.655777 TGGGGAGGGGCATATTTAGTTAG 59.344 47.826 0.00 0.00 0.00 2.34
509 510 3.656264 GGGGAGGGGCATATTTAGTTAGT 59.344 47.826 0.00 0.00 0.00 2.24
510 511 4.105858 GGGGAGGGGCATATTTAGTTAGTT 59.894 45.833 0.00 0.00 0.00 2.24
511 512 5.399842 GGGGAGGGGCATATTTAGTTAGTTT 60.400 44.000 0.00 0.00 0.00 2.66
512 513 6.183361 GGGGAGGGGCATATTTAGTTAGTTTA 60.183 42.308 0.00 0.00 0.00 2.01
513 514 6.940867 GGGAGGGGCATATTTAGTTAGTTTAG 59.059 42.308 0.00 0.00 0.00 1.85
514 515 7.202158 GGGAGGGGCATATTTAGTTAGTTTAGA 60.202 40.741 0.00 0.00 0.00 2.10
515 516 8.215736 GGAGGGGCATATTTAGTTAGTTTAGAA 58.784 37.037 0.00 0.00 0.00 2.10
516 517 9.274206 GAGGGGCATATTTAGTTAGTTTAGAAG 57.726 37.037 0.00 0.00 0.00 2.85
517 518 8.218488 AGGGGCATATTTAGTTAGTTTAGAAGG 58.782 37.037 0.00 0.00 0.00 3.46
518 519 8.215736 GGGGCATATTTAGTTAGTTTAGAAGGA 58.784 37.037 0.00 0.00 0.00 3.36
519 520 9.274206 GGGCATATTTAGTTAGTTTAGAAGGAG 57.726 37.037 0.00 0.00 0.00 3.69
520 521 8.775527 GGCATATTTAGTTAGTTTAGAAGGAGC 58.224 37.037 0.00 0.00 0.00 4.70
521 522 8.775527 GCATATTTAGTTAGTTTAGAAGGAGCC 58.224 37.037 0.00 0.00 0.00 4.70
522 523 9.274206 CATATTTAGTTAGTTTAGAAGGAGCCC 57.726 37.037 0.00 0.00 0.00 5.19
523 524 3.889520 AGTTAGTTTAGAAGGAGCCCG 57.110 47.619 0.00 0.00 0.00 6.13
524 525 3.171528 AGTTAGTTTAGAAGGAGCCCGT 58.828 45.455 0.00 0.00 0.00 5.28
525 526 4.347607 AGTTAGTTTAGAAGGAGCCCGTA 58.652 43.478 0.00 0.00 0.00 4.02
526 527 4.774200 AGTTAGTTTAGAAGGAGCCCGTAA 59.226 41.667 0.00 0.00 0.00 3.18
527 528 5.424573 AGTTAGTTTAGAAGGAGCCCGTAAT 59.575 40.000 0.00 0.00 0.00 1.89
528 529 4.838904 AGTTTAGAAGGAGCCCGTAATT 57.161 40.909 0.00 0.00 0.00 1.40
529 530 4.514401 AGTTTAGAAGGAGCCCGTAATTG 58.486 43.478 0.00 0.00 0.00 2.32
530 531 2.614829 TAGAAGGAGCCCGTAATTGC 57.385 50.000 0.00 0.00 0.00 3.56
531 532 0.107165 AGAAGGAGCCCGTAATTGCC 60.107 55.000 0.00 0.00 0.00 4.52
532 533 0.107165 GAAGGAGCCCGTAATTGCCT 60.107 55.000 0.00 0.00 0.00 4.75
533 534 0.394352 AAGGAGCCCGTAATTGCCTG 60.394 55.000 0.00 0.00 0.00 4.85
534 535 1.077716 GGAGCCCGTAATTGCCTGT 60.078 57.895 0.00 0.00 0.00 4.00
535 536 0.179468 GGAGCCCGTAATTGCCTGTA 59.821 55.000 0.00 0.00 0.00 2.74
536 537 1.407712 GGAGCCCGTAATTGCCTGTAA 60.408 52.381 0.00 0.00 0.00 2.41
537 538 1.940613 GAGCCCGTAATTGCCTGTAAG 59.059 52.381 0.00 0.00 0.00 2.34
538 539 1.557832 AGCCCGTAATTGCCTGTAAGA 59.442 47.619 0.00 0.00 34.07 2.10
539 540 1.669265 GCCCGTAATTGCCTGTAAGAC 59.331 52.381 0.00 0.00 34.07 3.01
540 541 2.679930 GCCCGTAATTGCCTGTAAGACT 60.680 50.000 0.00 0.00 34.07 3.24
541 542 3.195661 CCCGTAATTGCCTGTAAGACTC 58.804 50.000 0.00 0.00 34.07 3.36
542 543 3.195661 CCGTAATTGCCTGTAAGACTCC 58.804 50.000 0.00 0.00 34.07 3.85
543 544 2.858344 CGTAATTGCCTGTAAGACTCCG 59.142 50.000 0.00 0.00 34.07 4.63
544 545 3.675228 CGTAATTGCCTGTAAGACTCCGT 60.675 47.826 0.00 0.00 34.07 4.69
545 546 4.439153 CGTAATTGCCTGTAAGACTCCGTA 60.439 45.833 0.00 0.00 34.07 4.02
546 547 4.755266 AATTGCCTGTAAGACTCCGTAT 57.245 40.909 0.00 0.00 34.07 3.06
547 548 3.520290 TTGCCTGTAAGACTCCGTATG 57.480 47.619 0.00 0.00 34.07 2.39
548 549 2.453521 TGCCTGTAAGACTCCGTATGT 58.546 47.619 0.00 0.00 34.07 2.29
549 550 2.426024 TGCCTGTAAGACTCCGTATGTC 59.574 50.000 0.00 0.00 34.07 3.06
550 551 2.688958 GCCTGTAAGACTCCGTATGTCT 59.311 50.000 0.00 0.00 45.55 3.41
551 552 3.881688 GCCTGTAAGACTCCGTATGTCTA 59.118 47.826 0.00 0.00 43.16 2.59
552 553 4.023878 GCCTGTAAGACTCCGTATGTCTAG 60.024 50.000 0.00 0.00 43.16 2.43
553 554 4.023878 CCTGTAAGACTCCGTATGTCTAGC 60.024 50.000 0.00 0.00 43.16 3.42
554 555 4.520179 TGTAAGACTCCGTATGTCTAGCA 58.480 43.478 0.00 0.00 43.16 3.49
555 556 5.131067 TGTAAGACTCCGTATGTCTAGCAT 58.869 41.667 0.00 5.25 43.16 3.79
556 557 5.593095 TGTAAGACTCCGTATGTCTAGCATT 59.407 40.000 5.22 0.00 43.16 3.56
557 558 5.599999 AAGACTCCGTATGTCTAGCATTT 57.400 39.130 5.22 0.00 43.16 2.32
558 559 5.599999 AGACTCCGTATGTCTAGCATTTT 57.400 39.130 5.22 0.00 42.28 1.82
559 560 5.978814 AGACTCCGTATGTCTAGCATTTTT 58.021 37.500 5.22 0.00 42.28 1.94
560 561 5.812642 AGACTCCGTATGTCTAGCATTTTTG 59.187 40.000 5.22 0.00 42.28 2.44
561 562 5.730550 ACTCCGTATGTCTAGCATTTTTGA 58.269 37.500 5.22 0.00 38.94 2.69
562 563 5.581085 ACTCCGTATGTCTAGCATTTTTGAC 59.419 40.000 5.22 0.00 38.94 3.18
563 564 5.730550 TCCGTATGTCTAGCATTTTTGACT 58.269 37.500 5.22 0.00 38.94 3.41
564 565 5.580691 TCCGTATGTCTAGCATTTTTGACTG 59.419 40.000 5.22 0.00 38.94 3.51
565 566 5.220662 CCGTATGTCTAGCATTTTTGACTGG 60.221 44.000 5.22 1.72 38.94 4.00
566 567 5.580691 CGTATGTCTAGCATTTTTGACTGGA 59.419 40.000 5.22 0.00 38.94 3.86
567 568 6.237942 CGTATGTCTAGCATTTTTGACTGGAG 60.238 42.308 5.22 0.00 38.94 3.86
568 569 3.753272 TGTCTAGCATTTTTGACTGGAGC 59.247 43.478 0.00 0.00 0.00 4.70
569 570 3.127721 GTCTAGCATTTTTGACTGGAGCC 59.872 47.826 0.00 0.00 0.00 4.70
570 571 1.999648 AGCATTTTTGACTGGAGCCA 58.000 45.000 0.00 0.00 0.00 4.75
571 572 1.615392 AGCATTTTTGACTGGAGCCAC 59.385 47.619 0.00 0.00 0.00 5.01
572 573 1.615392 GCATTTTTGACTGGAGCCACT 59.385 47.619 0.00 0.00 0.00 4.00
573 574 2.352127 GCATTTTTGACTGGAGCCACTC 60.352 50.000 0.00 0.00 0.00 3.51
574 575 2.727123 TTTTTGACTGGAGCCACTCA 57.273 45.000 0.00 0.00 31.08 3.41
575 576 2.727123 TTTTGACTGGAGCCACTCAA 57.273 45.000 7.29 7.29 31.08 3.02
576 577 1.967319 TTTGACTGGAGCCACTCAAC 58.033 50.000 10.01 0.00 31.78 3.18
577 578 0.108585 TTGACTGGAGCCACTCAACC 59.891 55.000 7.29 0.00 31.08 3.77
578 579 1.374758 GACTGGAGCCACTCAACCG 60.375 63.158 0.00 0.00 31.08 4.44
579 580 1.816863 GACTGGAGCCACTCAACCGA 61.817 60.000 0.00 0.00 31.08 4.69
580 581 1.194781 ACTGGAGCCACTCAACCGAT 61.195 55.000 0.00 0.00 31.08 4.18
581 582 0.036010 CTGGAGCCACTCAACCGATT 60.036 55.000 0.00 0.00 31.08 3.34
582 583 0.321564 TGGAGCCACTCAACCGATTG 60.322 55.000 0.00 0.00 37.14 2.67
583 584 1.648467 GGAGCCACTCAACCGATTGC 61.648 60.000 0.00 0.00 35.63 3.56
584 585 1.970917 GAGCCACTCAACCGATTGCG 61.971 60.000 0.00 0.00 35.63 4.85
585 586 2.480555 CCACTCAACCGATTGCGC 59.519 61.111 0.00 0.00 35.63 6.09
586 587 2.096406 CACTCAACCGATTGCGCG 59.904 61.111 0.00 0.00 35.63 6.86
587 588 3.788766 ACTCAACCGATTGCGCGC 61.789 61.111 27.26 27.26 35.63 6.86
588 589 4.851114 CTCAACCGATTGCGCGCG 62.851 66.667 28.44 28.44 35.63 6.86
594 595 4.203542 CGATTGCGCGCGTGCTAA 62.204 61.111 40.02 31.28 39.65 3.09
595 596 2.097538 GATTGCGCGCGTGCTAAA 59.902 55.556 40.02 29.08 39.65 1.85
596 597 1.511043 GATTGCGCGCGTGCTAAAA 60.511 52.632 40.02 28.38 39.65 1.52
597 598 0.861450 GATTGCGCGCGTGCTAAAAT 60.861 50.000 40.02 31.31 39.65 1.82
598 599 1.133363 ATTGCGCGCGTGCTAAAATG 61.133 50.000 40.02 2.93 39.65 2.32
599 600 2.097538 GCGCGCGTGCTAAAATGA 59.902 55.556 35.43 0.00 39.65 2.57
600 601 2.208427 GCGCGCGTGCTAAAATGAC 61.208 57.895 35.43 5.70 39.65 3.06
601 602 1.580132 CGCGCGTGCTAAAATGACC 60.580 57.895 24.19 0.00 39.65 4.02
602 603 1.499949 GCGCGTGCTAAAATGACCA 59.500 52.632 15.02 0.00 38.39 4.02
603 604 0.109964 GCGCGTGCTAAAATGACCAA 60.110 50.000 15.02 0.00 38.39 3.67
604 605 1.664588 GCGCGTGCTAAAATGACCAAA 60.665 47.619 15.02 0.00 38.39 3.28
605 606 2.862512 CGCGTGCTAAAATGACCAAAT 58.137 42.857 0.00 0.00 0.00 2.32
606 607 3.241701 CGCGTGCTAAAATGACCAAATT 58.758 40.909 0.00 0.00 0.00 1.82
607 608 3.672867 CGCGTGCTAAAATGACCAAATTT 59.327 39.130 0.00 0.00 0.00 1.82
608 609 4.432762 CGCGTGCTAAAATGACCAAATTTG 60.433 41.667 11.40 11.40 30.21 2.32
609 610 4.666402 GCGTGCTAAAATGACCAAATTTGC 60.666 41.667 12.92 0.80 30.21 3.68
610 611 4.432762 CGTGCTAAAATGACCAAATTTGCG 60.433 41.667 12.92 8.64 30.21 4.85
611 612 3.993081 TGCTAAAATGACCAAATTTGCGG 59.007 39.130 12.92 2.76 30.21 5.69
612 613 3.181521 GCTAAAATGACCAAATTTGCGGC 60.182 43.478 12.92 8.88 30.21 6.53
613 614 2.540265 AAATGACCAAATTTGCGGCA 57.460 40.000 12.92 14.09 0.00 5.69
614 615 1.794512 AATGACCAAATTTGCGGCAC 58.205 45.000 12.92 2.72 0.00 5.01
635 636 2.202349 GCTTGTTTAGCGCGGCTG 60.202 61.111 8.83 0.00 40.71 4.85
636 637 2.966309 GCTTGTTTAGCGCGGCTGT 61.966 57.895 8.83 0.00 40.71 4.40
637 638 1.574428 CTTGTTTAGCGCGGCTGTT 59.426 52.632 8.83 0.00 40.10 3.16
638 639 0.725784 CTTGTTTAGCGCGGCTGTTG 60.726 55.000 8.83 0.00 40.10 3.33
639 640 2.123988 TTGTTTAGCGCGGCTGTTGG 62.124 55.000 8.83 0.00 40.10 3.77
640 641 2.031314 TTTAGCGCGGCTGTTGGA 59.969 55.556 8.83 0.00 40.10 3.53
641 642 2.032634 TTTAGCGCGGCTGTTGGAG 61.033 57.895 8.83 0.00 40.10 3.86
642 643 2.443260 TTTAGCGCGGCTGTTGGAGA 62.443 55.000 8.83 0.00 40.10 3.71
643 644 2.238847 TTAGCGCGGCTGTTGGAGAT 62.239 55.000 8.83 0.00 40.10 2.75
644 645 2.906182 TAGCGCGGCTGTTGGAGATG 62.906 60.000 8.83 0.00 40.10 2.90
645 646 3.869272 CGCGGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
646 647 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
654 655 0.809241 GTTGGAGATGCTCTGAGCCG 60.809 60.000 25.61 0.00 41.51 5.52
834 840 3.586961 CGCTCTCGCCGATCCTCA 61.587 66.667 0.00 0.00 0.00 3.86
846 852 2.416747 CGATCCTCACTTTGCAGTTCA 58.583 47.619 0.00 0.00 0.00 3.18
867 873 0.462759 GCCTCACACATCTGGTAGGC 60.463 60.000 0.00 0.00 40.34 3.93
879 885 1.766864 GGTAGGCCCTCTCTTCCCC 60.767 68.421 0.00 0.00 0.00 4.81
1014 1039 1.006805 CCTCATGAGCGATCCGACC 60.007 63.158 17.76 0.00 0.00 4.79
1402 1436 2.983030 GTGTGCAATCCGGCCACA 60.983 61.111 2.24 11.33 36.00 4.17
2183 2239 3.938963 TCACACTTGTCAACCTTTCTGAC 59.061 43.478 0.00 0.00 42.94 3.51
2485 2710 8.964476 TTCCCTGTTTCTGAATGTATTATCTC 57.036 34.615 0.00 0.00 0.00 2.75
2528 2753 6.638610 ACATGAATGGTTGTTTTCTTGTTCA 58.361 32.000 0.00 0.00 37.08 3.18
2538 2763 8.793592 GGTTGTTTTCTTGTTCATAACCTCTAT 58.206 33.333 0.00 0.00 34.86 1.98
2583 2811 1.754226 TCTTGCAACCTTGTGTTTCCC 59.246 47.619 0.00 0.00 34.00 3.97
2696 2924 4.641396 ACTGCTGTTGTATTTCTGTAGCA 58.359 39.130 0.00 0.00 37.97 3.49
2706 2934 6.394809 TGTATTTCTGTAGCATTCGAAGACA 58.605 36.000 3.35 4.56 34.32 3.41
2742 2970 7.066404 GGAGATTCAGTTCTCTTTGTTATTCCC 59.934 40.741 1.88 0.00 41.58 3.97
2754 2982 2.682856 TGTTATTCCCTTTCTGCGATGC 59.317 45.455 0.00 0.00 0.00 3.91
2819 3048 6.449635 TGAACTGCTGTTTCAACTTTATGT 57.550 33.333 10.54 0.00 36.39 2.29
2904 3134 5.645497 CCAGCTGCAGTTTTCTAATAGAAGT 59.355 40.000 16.64 0.00 35.37 3.01
3034 3348 3.499338 TCTGACTGCCAATTTCATGGTT 58.501 40.909 0.00 0.00 42.75 3.67
3055 3369 2.165641 TGACGCTTGATCCAAGACGTAT 59.834 45.455 20.13 0.00 45.72 3.06
3057 3371 2.094182 ACGCTTGATCCAAGACGTATGT 60.094 45.455 19.32 0.00 44.82 2.29
3065 3379 4.458256 TCCAAGACGTATGTATCCCCTA 57.542 45.455 0.00 0.00 0.00 3.53
3088 3402 7.392673 CCTATCAAAATGGTATCCATCCAAGAG 59.607 40.741 1.60 0.00 44.40 2.85
3125 3439 3.334751 CGAGCAACGACACGGCAA 61.335 61.111 0.00 0.00 45.77 4.52
3129 3443 2.590575 CAACGACACGGCAAGGGT 60.591 61.111 0.00 0.00 40.76 4.34
3133 3447 2.358737 GACACGGCAAGGGTGAGG 60.359 66.667 0.00 0.00 35.98 3.86
3134 3448 4.643387 ACACGGCAAGGGTGAGGC 62.643 66.667 0.00 0.00 38.73 4.70
3139 3453 4.043200 GCAAGGGTGAGGCGCAAC 62.043 66.667 10.83 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.899239 GATGACCTCGGCAGCGGG 62.899 72.222 0.00 0.00 0.00 6.13
17 18 3.842923 AGATGACCTCGGCAGCGG 61.843 66.667 0.00 0.00 0.00 5.52
18 19 2.584418 CAGATGACCTCGGCAGCG 60.584 66.667 0.00 0.00 0.00 5.18
19 20 2.894387 GCAGATGACCTCGGCAGC 60.894 66.667 0.00 0.00 43.65 5.25
20 21 2.584418 CGCAGATGACCTCGGCAG 60.584 66.667 4.04 0.00 44.32 4.85
21 22 4.147449 CCGCAGATGACCTCGGCA 62.147 66.667 4.04 0.00 44.32 5.69
132 133 4.489771 CATGACCCCTCCACCGCC 62.490 72.222 0.00 0.00 0.00 6.13
133 134 4.489771 CCATGACCCCTCCACCGC 62.490 72.222 0.00 0.00 0.00 5.68
134 135 4.489771 GCCATGACCCCTCCACCG 62.490 72.222 0.00 0.00 0.00 4.94
135 136 3.017581 AGCCATGACCCCTCCACC 61.018 66.667 0.00 0.00 0.00 4.61
136 137 1.271840 TACAGCCATGACCCCTCCAC 61.272 60.000 0.00 0.00 0.00 4.02
137 138 0.982852 CTACAGCCATGACCCCTCCA 60.983 60.000 0.00 0.00 0.00 3.86
138 139 1.700042 CCTACAGCCATGACCCCTCC 61.700 65.000 0.00 0.00 0.00 4.30
139 140 0.691078 TCCTACAGCCATGACCCCTC 60.691 60.000 0.00 0.00 0.00 4.30
140 141 0.029681 ATCCTACAGCCATGACCCCT 60.030 55.000 0.00 0.00 0.00 4.79
141 142 0.109342 CATCCTACAGCCATGACCCC 59.891 60.000 0.00 0.00 0.00 4.95
142 143 0.109342 CCATCCTACAGCCATGACCC 59.891 60.000 0.00 0.00 0.00 4.46
143 144 0.109342 CCCATCCTACAGCCATGACC 59.891 60.000 0.00 0.00 0.00 4.02
144 145 0.109342 CCCCATCCTACAGCCATGAC 59.891 60.000 0.00 0.00 0.00 3.06
145 146 0.327480 ACCCCATCCTACAGCCATGA 60.327 55.000 0.00 0.00 0.00 3.07
146 147 0.179009 CACCCCATCCTACAGCCATG 60.179 60.000 0.00 0.00 0.00 3.66
147 148 0.327480 TCACCCCATCCTACAGCCAT 60.327 55.000 0.00 0.00 0.00 4.40
148 149 0.982852 CTCACCCCATCCTACAGCCA 60.983 60.000 0.00 0.00 0.00 4.75
149 150 1.700042 CCTCACCCCATCCTACAGCC 61.700 65.000 0.00 0.00 0.00 4.85
150 151 1.700042 CCCTCACCCCATCCTACAGC 61.700 65.000 0.00 0.00 0.00 4.40
151 152 1.056700 CCCCTCACCCCATCCTACAG 61.057 65.000 0.00 0.00 0.00 2.74
152 153 1.004230 CCCCTCACCCCATCCTACA 59.996 63.158 0.00 0.00 0.00 2.74
153 154 1.770518 CCCCCTCACCCCATCCTAC 60.771 68.421 0.00 0.00 0.00 3.18
154 155 2.709396 CCCCCTCACCCCATCCTA 59.291 66.667 0.00 0.00 0.00 2.94
176 177 4.444024 CAATGGACGCACGCACCG 62.444 66.667 0.00 0.00 0.00 4.94
177 178 4.101790 CCAATGGACGCACGCACC 62.102 66.667 0.00 0.00 0.00 5.01
178 179 4.101790 CCCAATGGACGCACGCAC 62.102 66.667 0.00 0.00 0.00 5.34
179 180 4.634703 ACCCAATGGACGCACGCA 62.635 61.111 0.00 0.00 34.81 5.24
180 181 3.799755 GACCCAATGGACGCACGC 61.800 66.667 0.00 0.00 34.81 5.34
181 182 3.124921 GGACCCAATGGACGCACG 61.125 66.667 0.00 0.00 34.81 5.34
182 183 2.033448 TGGACCCAATGGACGCAC 59.967 61.111 0.00 0.00 34.81 5.34
183 184 2.063015 AACTGGACCCAATGGACGCA 62.063 55.000 0.00 0.00 34.81 5.24
184 185 1.303317 AACTGGACCCAATGGACGC 60.303 57.895 0.00 0.00 34.81 5.19
185 186 1.019278 CGAACTGGACCCAATGGACG 61.019 60.000 0.00 0.00 34.81 4.79
186 187 1.305930 GCGAACTGGACCCAATGGAC 61.306 60.000 0.00 0.00 34.81 4.02
187 188 1.002624 GCGAACTGGACCCAATGGA 60.003 57.895 0.00 0.00 34.81 3.41
188 189 2.046285 GGCGAACTGGACCCAATGG 61.046 63.158 0.00 0.00 37.80 3.16
189 190 2.398554 CGGCGAACTGGACCCAATG 61.399 63.158 0.00 0.00 0.00 2.82
190 191 2.046314 CGGCGAACTGGACCCAAT 60.046 61.111 0.00 0.00 0.00 3.16
191 192 4.323477 CCGGCGAACTGGACCCAA 62.323 66.667 9.30 0.00 46.41 4.12
226 227 2.730672 CTTCTTCGCGCCACCTTCG 61.731 63.158 0.00 0.00 0.00 3.79
227 228 1.355066 CTCTTCTTCGCGCCACCTTC 61.355 60.000 0.00 0.00 0.00 3.46
228 229 1.374758 CTCTTCTTCGCGCCACCTT 60.375 57.895 0.00 0.00 0.00 3.50
229 230 2.219325 CTCTCTTCTTCGCGCCACCT 62.219 60.000 0.00 0.00 0.00 4.00
230 231 1.807573 CTCTCTTCTTCGCGCCACC 60.808 63.158 0.00 0.00 0.00 4.61
231 232 1.080434 ACTCTCTTCTTCGCGCCAC 60.080 57.895 0.00 0.00 0.00 5.01
232 233 1.080501 CACTCTCTTCTTCGCGCCA 60.081 57.895 0.00 0.00 0.00 5.69
233 234 2.448705 GCACTCTCTTCTTCGCGCC 61.449 63.158 0.00 0.00 0.00 6.53
234 235 2.783064 CGCACTCTCTTCTTCGCGC 61.783 63.158 0.00 0.00 35.97 6.86
235 236 2.155194 CCGCACTCTCTTCTTCGCG 61.155 63.158 0.00 0.00 42.21 5.87
236 237 2.448705 GCCGCACTCTCTTCTTCGC 61.449 63.158 0.00 0.00 0.00 4.70
237 238 2.155194 CGCCGCACTCTCTTCTTCG 61.155 63.158 0.00 0.00 0.00 3.79
238 239 2.448705 GCGCCGCACTCTCTTCTTC 61.449 63.158 3.15 0.00 0.00 2.87
239 240 2.433318 GCGCCGCACTCTCTTCTT 60.433 61.111 3.15 0.00 0.00 2.52
240 241 4.785512 CGCGCCGCACTCTCTTCT 62.786 66.667 10.75 0.00 0.00 2.85
241 242 4.778415 TCGCGCCGCACTCTCTTC 62.778 66.667 10.75 0.00 0.00 2.87
242 243 4.785512 CTCGCGCCGCACTCTCTT 62.786 66.667 10.75 0.00 0.00 2.85
286 287 0.746659 GCTGTGTATTTGGGATGCCC 59.253 55.000 0.00 0.00 45.71 5.36
287 288 0.381801 CGCTGTGTATTTGGGATGCC 59.618 55.000 0.00 0.00 0.00 4.40
288 289 0.248621 GCGCTGTGTATTTGGGATGC 60.249 55.000 0.00 0.00 0.00 3.91
289 290 0.027979 CGCGCTGTGTATTTGGGATG 59.972 55.000 5.56 0.00 0.00 3.51
290 291 1.714899 GCGCGCTGTGTATTTGGGAT 61.715 55.000 26.67 0.00 0.00 3.85
291 292 2.395360 GCGCGCTGTGTATTTGGGA 61.395 57.895 26.67 0.00 0.00 4.37
292 293 2.100216 GCGCGCTGTGTATTTGGG 59.900 61.111 26.67 0.00 0.00 4.12
293 294 2.276617 CGCGCGCTGTGTATTTGG 60.277 61.111 30.48 5.07 0.00 3.28
294 295 1.154488 AACGCGCGCTGTGTATTTG 60.154 52.632 32.58 12.54 41.44 2.32
295 296 1.154488 CAACGCGCGCTGTGTATTT 60.154 52.632 32.58 11.38 41.44 1.40
296 297 2.474266 CAACGCGCGCTGTGTATT 59.526 55.556 32.58 12.24 41.44 1.89
297 298 3.487202 CCAACGCGCGCTGTGTAT 61.487 61.111 32.58 5.07 41.44 2.29
308 309 2.178273 GGTCCAAATCGCCAACGC 59.822 61.111 0.00 0.00 39.84 4.84
309 310 2.478746 CGGTCCAAATCGCCAACG 59.521 61.111 0.00 0.00 42.01 4.10
310 311 2.178273 GCGGTCCAAATCGCCAAC 59.822 61.111 0.00 0.00 45.42 3.77
317 318 3.961838 TTAGGCGCGCGGTCCAAAT 62.962 57.895 33.06 11.67 0.00 2.32
318 319 3.961838 ATTAGGCGCGCGGTCCAAA 62.962 57.895 33.06 14.13 0.00 3.28
319 320 3.961838 AATTAGGCGCGCGGTCCAA 62.962 57.895 33.06 19.78 0.00 3.53
320 321 4.460683 AATTAGGCGCGCGGTCCA 62.461 61.111 33.06 10.45 0.00 4.02
321 322 2.688526 TAGAATTAGGCGCGCGGTCC 62.689 60.000 33.06 24.73 0.00 4.46
322 323 0.666577 ATAGAATTAGGCGCGCGGTC 60.667 55.000 33.06 15.97 0.00 4.79
323 324 0.599558 TATAGAATTAGGCGCGCGGT 59.400 50.000 33.06 17.66 0.00 5.68
324 325 1.922570 ATATAGAATTAGGCGCGCGG 58.077 50.000 33.06 13.66 0.00 6.46
325 326 2.534939 GCAATATAGAATTAGGCGCGCG 60.535 50.000 28.44 28.44 0.00 6.86
326 327 2.223044 GGCAATATAGAATTAGGCGCGC 60.223 50.000 25.94 25.94 0.00 6.86
327 328 2.029244 CGGCAATATAGAATTAGGCGCG 59.971 50.000 0.00 0.00 38.16 6.86
328 329 3.658351 CGGCAATATAGAATTAGGCGC 57.342 47.619 0.00 0.00 38.16 6.53
329 330 2.029244 CGCGGCAATATAGAATTAGGCG 59.971 50.000 0.00 0.00 45.94 5.52
330 331 2.223044 GCGCGGCAATATAGAATTAGGC 60.223 50.000 8.83 0.00 0.00 3.93
331 332 2.029244 CGCGCGGCAATATAGAATTAGG 59.971 50.000 24.84 0.00 0.00 2.69
332 333 2.534939 GCGCGCGGCAATATAGAATTAG 60.535 50.000 33.06 0.00 42.87 1.73
333 334 1.392168 GCGCGCGGCAATATAGAATTA 59.608 47.619 33.06 0.00 42.87 1.40
334 335 0.165944 GCGCGCGGCAATATAGAATT 59.834 50.000 33.06 0.00 42.87 2.17
335 336 1.787847 GCGCGCGGCAATATAGAAT 59.212 52.632 33.06 0.00 42.87 2.40
336 337 2.653967 CGCGCGCGGCAATATAGAA 61.654 57.895 43.28 0.00 43.84 2.10
337 338 3.103289 CGCGCGCGGCAATATAGA 61.103 61.111 43.28 0.00 43.84 1.98
366 367 4.767255 AAAGCTCGGCTCCAGCGG 62.767 66.667 0.00 0.00 42.14 5.52
367 368 3.494336 CAAAGCTCGGCTCCAGCG 61.494 66.667 0.00 0.00 42.14 5.18
368 369 2.859273 TAGCAAAGCTCGGCTCCAGC 62.859 60.000 14.61 4.51 38.25 4.85
369 370 1.086634 GTAGCAAAGCTCGGCTCCAG 61.087 60.000 14.61 0.00 38.25 3.86
370 371 1.079127 GTAGCAAAGCTCGGCTCCA 60.079 57.895 14.61 0.00 38.25 3.86
371 372 0.462759 ATGTAGCAAAGCTCGGCTCC 60.463 55.000 14.61 5.40 38.25 4.70
372 373 0.933796 GATGTAGCAAAGCTCGGCTC 59.066 55.000 14.61 8.21 38.25 4.70
373 374 0.250234 TGATGTAGCAAAGCTCGGCT 59.750 50.000 15.39 15.39 42.56 5.52
374 375 1.086696 TTGATGTAGCAAAGCTCGGC 58.913 50.000 0.00 1.50 40.44 5.54
375 376 2.076100 TGTTGATGTAGCAAAGCTCGG 58.924 47.619 0.00 0.00 40.44 4.63
376 377 3.811722 TTGTTGATGTAGCAAAGCTCG 57.188 42.857 0.00 0.00 40.44 5.03
377 378 3.908382 CGTTTGTTGATGTAGCAAAGCTC 59.092 43.478 0.00 0.00 39.66 4.09
378 379 3.563808 TCGTTTGTTGATGTAGCAAAGCT 59.436 39.130 0.00 0.00 39.66 3.74
379 380 3.884169 TCGTTTGTTGATGTAGCAAAGC 58.116 40.909 0.00 0.00 39.66 3.51
380 381 6.246332 CGTAATCGTTTGTTGATGTAGCAAAG 59.754 38.462 0.00 0.00 39.66 2.77
381 382 6.074642 CGTAATCGTTTGTTGATGTAGCAAA 58.925 36.000 0.00 0.00 37.18 3.68
382 383 5.390040 CCGTAATCGTTTGTTGATGTAGCAA 60.390 40.000 0.00 0.00 35.01 3.91
383 384 4.092237 CCGTAATCGTTTGTTGATGTAGCA 59.908 41.667 0.00 0.00 35.01 3.49
384 385 4.493545 CCCGTAATCGTTTGTTGATGTAGC 60.494 45.833 0.00 0.00 35.01 3.58
385 386 4.493545 GCCCGTAATCGTTTGTTGATGTAG 60.494 45.833 0.00 0.00 35.01 2.74
386 387 3.371591 GCCCGTAATCGTTTGTTGATGTA 59.628 43.478 0.00 0.00 35.01 2.29
387 388 2.160813 GCCCGTAATCGTTTGTTGATGT 59.839 45.455 0.00 0.00 35.01 3.06
388 389 2.418628 AGCCCGTAATCGTTTGTTGATG 59.581 45.455 0.00 0.00 35.01 3.07
389 390 2.418628 CAGCCCGTAATCGTTTGTTGAT 59.581 45.455 0.00 0.00 35.01 2.57
390 391 1.801771 CAGCCCGTAATCGTTTGTTGA 59.198 47.619 0.00 0.00 35.01 3.18
391 392 1.135803 CCAGCCCGTAATCGTTTGTTG 60.136 52.381 0.00 0.00 35.01 3.33
392 393 1.161843 CCAGCCCGTAATCGTTTGTT 58.838 50.000 0.00 0.00 35.01 2.83
393 394 0.675522 CCCAGCCCGTAATCGTTTGT 60.676 55.000 0.00 0.00 35.01 2.83
394 395 0.391927 TCCCAGCCCGTAATCGTTTG 60.392 55.000 0.00 0.00 35.01 2.93
395 396 0.325602 TTCCCAGCCCGTAATCGTTT 59.674 50.000 0.00 0.00 35.01 3.60
396 397 0.107848 CTTCCCAGCCCGTAATCGTT 60.108 55.000 0.00 0.00 35.01 3.85
397 398 1.262640 ACTTCCCAGCCCGTAATCGT 61.263 55.000 0.00 0.00 35.01 3.73
398 399 0.810031 CACTTCCCAGCCCGTAATCG 60.810 60.000 0.00 0.00 0.00 3.34
399 400 0.252197 ACACTTCCCAGCCCGTAATC 59.748 55.000 0.00 0.00 0.00 1.75
400 401 0.696501 AACACTTCCCAGCCCGTAAT 59.303 50.000 0.00 0.00 0.00 1.89
401 402 1.002315 GTAACACTTCCCAGCCCGTAA 59.998 52.381 0.00 0.00 0.00 3.18
402 403 0.609662 GTAACACTTCCCAGCCCGTA 59.390 55.000 0.00 0.00 0.00 4.02
403 404 1.373812 GTAACACTTCCCAGCCCGT 59.626 57.895 0.00 0.00 0.00 5.28
404 405 0.035439 ATGTAACACTTCCCAGCCCG 60.035 55.000 0.00 0.00 0.00 6.13
405 406 1.463674 CATGTAACACTTCCCAGCCC 58.536 55.000 0.00 0.00 0.00 5.19
406 407 1.271926 ACCATGTAACACTTCCCAGCC 60.272 52.381 0.00 0.00 0.00 4.85
407 408 1.812571 CACCATGTAACACTTCCCAGC 59.187 52.381 0.00 0.00 0.00 4.85
408 409 3.417069 TCACCATGTAACACTTCCCAG 57.583 47.619 0.00 0.00 0.00 4.45
409 410 4.380843 AATCACCATGTAACACTTCCCA 57.619 40.909 0.00 0.00 0.00 4.37
410 411 5.497474 ACTAATCACCATGTAACACTTCCC 58.503 41.667 0.00 0.00 0.00 3.97
411 412 6.170506 TGACTAATCACCATGTAACACTTCC 58.829 40.000 0.00 0.00 0.00 3.46
412 413 6.874134 ACTGACTAATCACCATGTAACACTTC 59.126 38.462 0.00 0.00 0.00 3.01
413 414 6.769512 ACTGACTAATCACCATGTAACACTT 58.230 36.000 0.00 0.00 0.00 3.16
414 415 6.360370 ACTGACTAATCACCATGTAACACT 57.640 37.500 0.00 0.00 0.00 3.55
415 416 7.435068 AAACTGACTAATCACCATGTAACAC 57.565 36.000 0.00 0.00 0.00 3.32
416 417 8.458573 AAAAACTGACTAATCACCATGTAACA 57.541 30.769 0.00 0.00 0.00 2.41
420 421 9.912634 CAATTAAAAACTGACTAATCACCATGT 57.087 29.630 0.00 0.00 0.00 3.21
424 425 9.626045 CCTTCAATTAAAAACTGACTAATCACC 57.374 33.333 0.00 0.00 0.00 4.02
430 431 9.292195 CCCTAACCTTCAATTAAAAACTGACTA 57.708 33.333 0.00 0.00 0.00 2.59
431 432 7.232737 CCCCTAACCTTCAATTAAAAACTGACT 59.767 37.037 0.00 0.00 0.00 3.41
432 433 7.375834 CCCCTAACCTTCAATTAAAAACTGAC 58.624 38.462 0.00 0.00 0.00 3.51
433 434 6.495526 CCCCCTAACCTTCAATTAAAAACTGA 59.504 38.462 0.00 0.00 0.00 3.41
434 435 6.495526 TCCCCCTAACCTTCAATTAAAAACTG 59.504 38.462 0.00 0.00 0.00 3.16
435 436 6.495872 GTCCCCCTAACCTTCAATTAAAAACT 59.504 38.462 0.00 0.00 0.00 2.66
436 437 6.570957 CGTCCCCCTAACCTTCAATTAAAAAC 60.571 42.308 0.00 0.00 0.00 2.43
437 438 5.477637 CGTCCCCCTAACCTTCAATTAAAAA 59.522 40.000 0.00 0.00 0.00 1.94
438 439 5.011586 CGTCCCCCTAACCTTCAATTAAAA 58.988 41.667 0.00 0.00 0.00 1.52
439 440 4.591929 CGTCCCCCTAACCTTCAATTAAA 58.408 43.478 0.00 0.00 0.00 1.52
440 441 3.622953 GCGTCCCCCTAACCTTCAATTAA 60.623 47.826 0.00 0.00 0.00 1.40
441 442 2.092807 GCGTCCCCCTAACCTTCAATTA 60.093 50.000 0.00 0.00 0.00 1.40
442 443 1.340697 GCGTCCCCCTAACCTTCAATT 60.341 52.381 0.00 0.00 0.00 2.32
443 444 0.255033 GCGTCCCCCTAACCTTCAAT 59.745 55.000 0.00 0.00 0.00 2.57
444 445 1.681076 GCGTCCCCCTAACCTTCAA 59.319 57.895 0.00 0.00 0.00 2.69
445 446 2.652095 CGCGTCCCCCTAACCTTCA 61.652 63.158 0.00 0.00 0.00 3.02
446 447 2.186125 CGCGTCCCCCTAACCTTC 59.814 66.667 0.00 0.00 0.00 3.46
447 448 3.396570 CCGCGTCCCCCTAACCTT 61.397 66.667 4.92 0.00 0.00 3.50
464 465 1.229177 ATTTTCAGGTGGGTGGGCC 60.229 57.895 0.00 0.00 0.00 5.80
465 466 0.541764 TGATTTTCAGGTGGGTGGGC 60.542 55.000 0.00 0.00 0.00 5.36
466 467 1.549203 CTGATTTTCAGGTGGGTGGG 58.451 55.000 0.00 0.00 40.71 4.61
476 477 0.704076 CCCCTCCCCACTGATTTTCA 59.296 55.000 0.00 0.00 0.00 2.69
477 478 0.684479 GCCCCTCCCCACTGATTTTC 60.684 60.000 0.00 0.00 0.00 2.29
478 479 1.388133 GCCCCTCCCCACTGATTTT 59.612 57.895 0.00 0.00 0.00 1.82
479 480 1.224003 ATGCCCCTCCCCACTGATTT 61.224 55.000 0.00 0.00 0.00 2.17
480 481 0.328450 TATGCCCCTCCCCACTGATT 60.328 55.000 0.00 0.00 0.00 2.57
481 482 0.103715 ATATGCCCCTCCCCACTGAT 60.104 55.000 0.00 0.00 0.00 2.90
482 483 0.328450 AATATGCCCCTCCCCACTGA 60.328 55.000 0.00 0.00 0.00 3.41
483 484 0.557729 AAATATGCCCCTCCCCACTG 59.442 55.000 0.00 0.00 0.00 3.66
484 485 2.065799 CTAAATATGCCCCTCCCCACT 58.934 52.381 0.00 0.00 0.00 4.00
485 486 1.780919 ACTAAATATGCCCCTCCCCAC 59.219 52.381 0.00 0.00 0.00 4.61
486 487 2.222461 ACTAAATATGCCCCTCCCCA 57.778 50.000 0.00 0.00 0.00 4.96
487 488 3.656264 ACTAACTAAATATGCCCCTCCCC 59.344 47.826 0.00 0.00 0.00 4.81
488 489 4.995624 ACTAACTAAATATGCCCCTCCC 57.004 45.455 0.00 0.00 0.00 4.30
489 490 7.742767 TCTAAACTAACTAAATATGCCCCTCC 58.257 38.462 0.00 0.00 0.00 4.30
490 491 9.274206 CTTCTAAACTAACTAAATATGCCCCTC 57.726 37.037 0.00 0.00 0.00 4.30
491 492 8.218488 CCTTCTAAACTAACTAAATATGCCCCT 58.782 37.037 0.00 0.00 0.00 4.79
492 493 8.215736 TCCTTCTAAACTAACTAAATATGCCCC 58.784 37.037 0.00 0.00 0.00 5.80
493 494 9.274206 CTCCTTCTAAACTAACTAAATATGCCC 57.726 37.037 0.00 0.00 0.00 5.36
494 495 8.775527 GCTCCTTCTAAACTAACTAAATATGCC 58.224 37.037 0.00 0.00 0.00 4.40
495 496 8.775527 GGCTCCTTCTAAACTAACTAAATATGC 58.224 37.037 0.00 0.00 0.00 3.14
496 497 9.274206 GGGCTCCTTCTAAACTAACTAAATATG 57.726 37.037 0.00 0.00 0.00 1.78
497 498 8.148999 CGGGCTCCTTCTAAACTAACTAAATAT 58.851 37.037 0.00 0.00 0.00 1.28
498 499 7.124750 ACGGGCTCCTTCTAAACTAACTAAATA 59.875 37.037 0.00 0.00 0.00 1.40
499 500 6.070366 ACGGGCTCCTTCTAAACTAACTAAAT 60.070 38.462 0.00 0.00 0.00 1.40
500 501 5.246883 ACGGGCTCCTTCTAAACTAACTAAA 59.753 40.000 0.00 0.00 0.00 1.85
501 502 4.774200 ACGGGCTCCTTCTAAACTAACTAA 59.226 41.667 0.00 0.00 0.00 2.24
502 503 4.347607 ACGGGCTCCTTCTAAACTAACTA 58.652 43.478 0.00 0.00 0.00 2.24
503 504 3.171528 ACGGGCTCCTTCTAAACTAACT 58.828 45.455 0.00 0.00 0.00 2.24
504 505 3.606595 ACGGGCTCCTTCTAAACTAAC 57.393 47.619 0.00 0.00 0.00 2.34
505 506 5.945144 ATTACGGGCTCCTTCTAAACTAA 57.055 39.130 0.00 0.00 0.00 2.24
506 507 5.667466 CAATTACGGGCTCCTTCTAAACTA 58.333 41.667 0.00 0.00 0.00 2.24
507 508 4.514401 CAATTACGGGCTCCTTCTAAACT 58.486 43.478 0.00 0.00 0.00 2.66
508 509 3.064958 GCAATTACGGGCTCCTTCTAAAC 59.935 47.826 0.00 0.00 0.00 2.01
509 510 3.275999 GCAATTACGGGCTCCTTCTAAA 58.724 45.455 0.00 0.00 0.00 1.85
510 511 2.420967 GGCAATTACGGGCTCCTTCTAA 60.421 50.000 0.00 0.00 0.00 2.10
511 512 1.140252 GGCAATTACGGGCTCCTTCTA 59.860 52.381 0.00 0.00 0.00 2.10
512 513 0.107165 GGCAATTACGGGCTCCTTCT 60.107 55.000 0.00 0.00 0.00 2.85
513 514 0.107165 AGGCAATTACGGGCTCCTTC 60.107 55.000 0.00 0.00 36.23 3.46
514 515 0.394352 CAGGCAATTACGGGCTCCTT 60.394 55.000 0.00 0.00 39.39 3.36
515 516 1.224592 CAGGCAATTACGGGCTCCT 59.775 57.895 0.00 0.00 39.39 3.69
516 517 0.179468 TACAGGCAATTACGGGCTCC 59.821 55.000 0.00 0.00 39.39 4.70
517 518 1.940613 CTTACAGGCAATTACGGGCTC 59.059 52.381 0.00 0.00 39.39 4.70
518 519 1.557832 TCTTACAGGCAATTACGGGCT 59.442 47.619 0.00 0.00 42.53 5.19
519 520 1.669265 GTCTTACAGGCAATTACGGGC 59.331 52.381 0.00 0.00 0.00 6.13
520 521 3.195661 GAGTCTTACAGGCAATTACGGG 58.804 50.000 0.00 0.00 0.00 5.28
521 522 3.195661 GGAGTCTTACAGGCAATTACGG 58.804 50.000 0.00 0.00 0.00 4.02
522 523 2.858344 CGGAGTCTTACAGGCAATTACG 59.142 50.000 0.00 0.00 0.00 3.18
523 524 3.858247 ACGGAGTCTTACAGGCAATTAC 58.142 45.455 0.00 0.00 29.74 1.89
524 525 5.128171 ACATACGGAGTCTTACAGGCAATTA 59.872 40.000 0.00 0.00 43.93 1.40
525 526 4.081087 ACATACGGAGTCTTACAGGCAATT 60.081 41.667 0.00 0.00 43.93 2.32
526 527 3.451178 ACATACGGAGTCTTACAGGCAAT 59.549 43.478 0.00 0.00 43.93 3.56
527 528 2.829720 ACATACGGAGTCTTACAGGCAA 59.170 45.455 0.00 0.00 43.93 4.52
528 529 2.426024 GACATACGGAGTCTTACAGGCA 59.574 50.000 0.00 0.00 43.93 4.75
529 530 2.688958 AGACATACGGAGTCTTACAGGC 59.311 50.000 1.47 0.00 43.47 4.85
530 531 4.023878 GCTAGACATACGGAGTCTTACAGG 60.024 50.000 11.09 1.48 43.47 4.00
531 532 4.575236 TGCTAGACATACGGAGTCTTACAG 59.425 45.833 11.09 5.42 43.47 2.74
532 533 4.520179 TGCTAGACATACGGAGTCTTACA 58.480 43.478 11.09 7.87 43.47 2.41
533 534 5.692613 ATGCTAGACATACGGAGTCTTAC 57.307 43.478 11.09 5.86 43.47 2.34
534 535 6.710597 AAATGCTAGACATACGGAGTCTTA 57.289 37.500 11.09 1.62 43.47 2.10
535 536 5.599999 AAATGCTAGACATACGGAGTCTT 57.400 39.130 11.09 0.00 43.47 3.01
537 538 5.810587 TCAAAAATGCTAGACATACGGAGTC 59.189 40.000 0.00 0.00 43.93 3.36
538 539 6.574465 AGTCAAAAATGCTAGACATACGGAGT 60.574 38.462 0.00 0.00 38.34 3.85
539 540 5.812642 AGTCAAAAATGCTAGACATACGGAG 59.187 40.000 0.00 0.00 38.34 4.63
540 541 5.580691 CAGTCAAAAATGCTAGACATACGGA 59.419 40.000 0.00 0.00 38.34 4.69
541 542 5.220662 CCAGTCAAAAATGCTAGACATACGG 60.221 44.000 0.00 0.00 38.34 4.02
542 543 5.580691 TCCAGTCAAAAATGCTAGACATACG 59.419 40.000 0.00 0.00 38.34 3.06
543 544 6.457528 GCTCCAGTCAAAAATGCTAGACATAC 60.458 42.308 0.00 0.00 38.34 2.39
544 545 5.586243 GCTCCAGTCAAAAATGCTAGACATA 59.414 40.000 0.00 0.00 38.34 2.29
545 546 4.397417 GCTCCAGTCAAAAATGCTAGACAT 59.603 41.667 0.00 0.00 42.30 3.06
546 547 3.753272 GCTCCAGTCAAAAATGCTAGACA 59.247 43.478 0.00 0.00 33.56 3.41
547 548 3.127721 GGCTCCAGTCAAAAATGCTAGAC 59.872 47.826 0.00 0.00 0.00 2.59
548 549 3.244875 TGGCTCCAGTCAAAAATGCTAGA 60.245 43.478 0.00 0.00 0.00 2.43
549 550 3.084039 TGGCTCCAGTCAAAAATGCTAG 58.916 45.455 0.00 0.00 0.00 3.42
550 551 2.819608 GTGGCTCCAGTCAAAAATGCTA 59.180 45.455 0.00 0.00 0.00 3.49
551 552 1.615392 GTGGCTCCAGTCAAAAATGCT 59.385 47.619 0.00 0.00 0.00 3.79
552 553 1.615392 AGTGGCTCCAGTCAAAAATGC 59.385 47.619 0.00 0.00 0.00 3.56
553 554 3.565905 GAGTGGCTCCAGTCAAAAATG 57.434 47.619 16.69 0.00 43.73 2.32
560 561 1.374758 CGGTTGAGTGGCTCCAGTC 60.375 63.158 15.15 15.15 44.34 3.51
561 562 1.194781 ATCGGTTGAGTGGCTCCAGT 61.195 55.000 0.00 0.00 0.00 4.00
562 563 0.036010 AATCGGTTGAGTGGCTCCAG 60.036 55.000 0.00 0.00 0.00 3.86
563 564 0.321564 CAATCGGTTGAGTGGCTCCA 60.322 55.000 0.90 0.00 36.57 3.86
564 565 1.648467 GCAATCGGTTGAGTGGCTCC 61.648 60.000 13.85 0.00 40.45 4.70
565 566 1.796796 GCAATCGGTTGAGTGGCTC 59.203 57.895 13.85 0.00 40.45 4.70
566 567 2.034879 CGCAATCGGTTGAGTGGCT 61.035 57.895 13.85 0.00 40.45 4.75
567 568 2.480555 CGCAATCGGTTGAGTGGC 59.519 61.111 13.85 0.00 40.45 5.01
568 569 2.480555 GCGCAATCGGTTGAGTGG 59.519 61.111 13.85 0.00 40.45 4.00
569 570 2.096406 CGCGCAATCGGTTGAGTG 59.904 61.111 13.85 12.43 42.91 3.51
570 571 3.788766 GCGCGCAATCGGTTGAGT 61.789 61.111 29.10 0.00 37.44 3.41
571 572 4.851114 CGCGCGCAATCGGTTGAG 62.851 66.667 32.61 10.71 37.53 3.02
577 578 3.694338 TTTAGCACGCGCGCAATCG 62.694 57.895 32.58 17.34 45.49 3.34
578 579 0.861450 ATTTTAGCACGCGCGCAATC 60.861 50.000 32.58 18.17 45.49 2.67
579 580 1.133363 CATTTTAGCACGCGCGCAAT 61.133 50.000 32.58 17.94 45.49 3.56
580 581 1.795569 CATTTTAGCACGCGCGCAA 60.796 52.632 32.58 16.29 45.49 4.85
581 582 2.202285 CATTTTAGCACGCGCGCA 60.202 55.556 32.58 8.18 45.49 6.09
582 583 2.097538 TCATTTTAGCACGCGCGC 59.902 55.556 32.58 23.91 45.49 6.86
583 584 1.580132 GGTCATTTTAGCACGCGCG 60.580 57.895 30.96 30.96 45.49 6.86
584 585 0.109964 TTGGTCATTTTAGCACGCGC 60.110 50.000 5.73 0.00 38.99 6.86
585 586 2.323939 TTTGGTCATTTTAGCACGCG 57.676 45.000 3.53 3.53 0.00 6.01
586 587 4.666402 GCAAATTTGGTCATTTTAGCACGC 60.666 41.667 19.47 0.00 0.00 5.34
587 588 4.432762 CGCAAATTTGGTCATTTTAGCACG 60.433 41.667 19.47 6.04 0.00 5.34
588 589 4.143137 CCGCAAATTTGGTCATTTTAGCAC 60.143 41.667 19.47 0.00 0.00 4.40
589 590 3.993081 CCGCAAATTTGGTCATTTTAGCA 59.007 39.130 19.47 0.00 0.00 3.49
590 591 3.181521 GCCGCAAATTTGGTCATTTTAGC 60.182 43.478 19.47 0.33 0.00 3.09
591 592 3.993081 TGCCGCAAATTTGGTCATTTTAG 59.007 39.130 19.47 0.00 0.00 1.85
592 593 3.743396 GTGCCGCAAATTTGGTCATTTTA 59.257 39.130 19.47 0.00 0.00 1.52
593 594 2.547634 GTGCCGCAAATTTGGTCATTTT 59.452 40.909 19.47 0.00 0.00 1.82
594 595 2.142319 GTGCCGCAAATTTGGTCATTT 58.858 42.857 19.47 0.00 0.00 2.32
595 596 1.794512 GTGCCGCAAATTTGGTCATT 58.205 45.000 19.47 0.00 0.00 2.57
596 597 0.388391 CGTGCCGCAAATTTGGTCAT 60.388 50.000 19.47 0.00 0.00 3.06
597 598 1.007964 CGTGCCGCAAATTTGGTCA 60.008 52.632 19.47 3.58 0.00 4.02
598 599 1.732683 CCGTGCCGCAAATTTGGTC 60.733 57.895 19.47 3.20 0.00 4.02
599 600 2.338257 CCGTGCCGCAAATTTGGT 59.662 55.556 19.47 0.00 0.00 3.67
600 601 2.021039 CACCGTGCCGCAAATTTGG 61.021 57.895 19.47 9.55 0.00 3.28
601 602 2.656807 GCACCGTGCCGCAAATTTG 61.657 57.895 12.80 14.03 37.42 2.32
602 603 2.355718 GCACCGTGCCGCAAATTT 60.356 55.556 12.80 0.00 37.42 1.82
603 604 2.855514 AAGCACCGTGCCGCAAATT 61.856 52.632 19.96 3.77 46.52 1.82
604 605 3.294493 AAGCACCGTGCCGCAAAT 61.294 55.556 19.96 0.00 46.52 2.32
605 606 4.263209 CAAGCACCGTGCCGCAAA 62.263 61.111 19.96 0.00 46.52 3.68
608 609 2.780149 CTAAACAAGCACCGTGCCGC 62.780 60.000 19.96 0.00 46.52 6.53
609 610 1.206578 CTAAACAAGCACCGTGCCG 59.793 57.895 19.96 13.76 46.52 5.69
619 620 0.725784 CAACAGCCGCGCTAAACAAG 60.726 55.000 5.56 0.00 36.40 3.16
620 621 1.281353 CAACAGCCGCGCTAAACAA 59.719 52.632 5.56 0.00 36.40 2.83
621 622 2.612567 CCAACAGCCGCGCTAAACA 61.613 57.895 5.56 0.00 36.40 2.83
622 623 2.175811 CCAACAGCCGCGCTAAAC 59.824 61.111 5.56 0.00 36.40 2.01
623 624 2.031314 TCCAACAGCCGCGCTAAA 59.969 55.556 5.56 0.00 36.40 1.85
624 625 2.238847 ATCTCCAACAGCCGCGCTAA 62.239 55.000 5.56 0.00 36.40 3.09
625 626 2.721167 ATCTCCAACAGCCGCGCTA 61.721 57.895 5.56 0.00 36.40 4.26
626 627 4.087892 ATCTCCAACAGCCGCGCT 62.088 61.111 5.56 0.00 40.77 5.92
627 628 3.869272 CATCTCCAACAGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
628 629 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
629 630 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
630 631 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
641 642 0.176680 TTTCCTCGGCTCAGAGCATC 59.823 55.000 24.09 6.67 44.75 3.91
642 643 0.615331 TTTTCCTCGGCTCAGAGCAT 59.385 50.000 24.09 0.00 44.75 3.79
643 644 0.396435 TTTTTCCTCGGCTCAGAGCA 59.604 50.000 24.09 3.38 44.75 4.26
644 645 3.233355 TTTTTCCTCGGCTCAGAGC 57.767 52.632 14.69 14.69 41.46 4.09
663 664 3.106738 GCAGGCACTTATCTGGCAT 57.893 52.632 0.00 0.00 39.19 4.40
664 665 4.643795 GCAGGCACTTATCTGGCA 57.356 55.556 0.00 0.00 39.19 4.92
665 666 3.833304 GGCAGGCACTTATCTGGC 58.167 61.111 0.00 0.00 46.42 4.85
666 667 1.524621 CCGGCAGGCACTTATCTGG 60.525 63.158 0.00 0.00 34.60 3.86
667 668 0.392998 AACCGGCAGGCACTTATCTG 60.393 55.000 0.00 0.00 42.76 2.90
671 672 2.349755 GGAACCGGCAGGCACTTA 59.650 61.111 0.00 0.00 42.76 2.24
834 840 0.463654 TGAGGCGTGAACTGCAAAGT 60.464 50.000 0.00 0.00 0.00 2.66
846 852 0.532573 CTACCAGATGTGTGAGGCGT 59.467 55.000 0.00 0.00 0.00 5.68
867 873 3.787001 GCGTGGGGGAAGAGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
1198 1224 9.343539 GCTTAGGTAACCATGAGAAAGATATTT 57.656 33.333 0.00 0.00 37.17 1.40
1402 1436 1.339727 GGCACGGTTACCCATTTCTCT 60.340 52.381 0.00 0.00 0.00 3.10
2183 2239 8.623903 TGTACCATTAATGTAACTCTAGTACCG 58.376 37.037 14.25 0.00 0.00 4.02
2329 2387 1.203523 TGGCCACTTGAACACAAACAC 59.796 47.619 0.00 0.00 0.00 3.32
2452 2676 6.267471 ACATTCAGAAACAGGGAAATAAGCAA 59.733 34.615 0.00 0.00 0.00 3.91
2561 2789 3.181466 GGGAAACACAAGGTTGCAAGATT 60.181 43.478 0.00 0.00 40.35 2.40
2706 2934 6.316499 GAGAACTGAATCTCCACAGCATGTT 61.316 44.000 0.00 0.00 43.05 2.71
2742 2970 4.977741 AACAAAAATGCATCGCAGAAAG 57.022 36.364 0.00 0.00 43.65 2.62
2754 2982 8.673626 AGCAATAGATCGTGTTAACAAAAATG 57.326 30.769 10.51 3.46 0.00 2.32
2851 3080 3.877801 GTTGAAGCCAGCGATAACG 57.122 52.632 0.00 0.00 42.93 3.18
2904 3134 2.942376 CACTAACTGAACAGGCACACAA 59.058 45.455 6.76 0.00 0.00 3.33
3034 3348 0.317160 ACGTCTTGGATCAAGCGTCA 59.683 50.000 17.37 0.00 44.08 4.35
3055 3369 6.564539 TGGATACCATTTTGATAGGGGATACA 59.435 38.462 0.00 0.00 39.74 2.29
3057 3371 7.091993 GGATGGATACCATTTTGATAGGGGATA 60.092 40.741 4.74 0.00 45.26 2.59
3065 3379 6.676558 ACTCTTGGATGGATACCATTTTGAT 58.323 36.000 4.74 0.00 45.26 2.57
3117 3431 4.643387 GCCTCACCCTTGCCGTGT 62.643 66.667 0.00 0.00 32.86 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.