Multiple sequence alignment - TraesCS3D01G445800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G445800 chr3D 100.000 4097 0 0 1 4097 554779400 554775304 0.000000e+00 7566.0
1 TraesCS3D01G445800 chr3D 97.098 2860 67 9 874 3731 554768932 554766087 0.000000e+00 4807.0
2 TraesCS3D01G445800 chr3D 74.089 741 180 9 2111 2842 554731576 554730839 1.110000e-75 294.0
3 TraesCS3D01G445800 chr3D 100.000 33 0 0 3742 3774 554775554 554775522 1.230000e-05 62.1
4 TraesCS3D01G445800 chr3D 100.000 33 0 0 3847 3879 554775659 554775627 1.230000e-05 62.1
5 TraesCS3D01G445800 chr3D 96.875 32 0 1 3737 3767 554775614 554775583 7.000000e-03 52.8
6 TraesCS3D01G445800 chr3D 96.875 32 0 1 3787 3818 554775664 554775634 7.000000e-03 52.8
7 TraesCS3D01G445800 chr3A 95.055 3721 146 20 17 3728 691044023 691040332 0.000000e+00 5818.0
8 TraesCS3D01G445800 chr3A 75.783 2106 428 50 1495 3540 690999092 690997009 0.000000e+00 989.0
9 TraesCS3D01G445800 chr3A 88.811 286 24 5 3816 4097 691108972 691108691 1.090000e-90 344.0
10 TraesCS3D01G445800 chr3A 82.471 348 58 3 1027 1373 690999536 690999191 6.660000e-78 302.0
11 TraesCS3D01G445800 chrUn 95.548 1752 53 4 874 2624 45262280 45264007 0.000000e+00 2780.0
12 TraesCS3D01G445800 chrUn 98.429 700 10 1 3030 3728 406194386 406195085 0.000000e+00 1230.0
13 TraesCS3D01G445800 chrUn 100.000 285 0 0 3813 4097 45255893 45256177 1.010000e-145 527.0
14 TraesCS3D01G445800 chrUn 100.000 285 0 0 3813 4097 386125695 386125979 1.010000e-145 527.0
15 TraesCS3D01G445800 chrUn 100.000 33 0 0 3742 3774 45255927 45255959 1.230000e-05 62.1
16 TraesCS3D01G445800 chrUn 100.000 33 0 0 3742 3774 386125729 386125761 1.230000e-05 62.1
17 TraesCS3D01G445800 chr3B 95.879 1359 36 6 2381 3726 736712180 736710829 0.000000e+00 2182.0
18 TraesCS3D01G445800 chr3B 95.849 1349 54 2 874 2221 736713528 736712181 0.000000e+00 2180.0
19 TraesCS3D01G445800 chr3B 92.912 522 30 2 61 575 736714270 736713749 0.000000e+00 752.0
20 TraesCS3D01G445800 chr3B 94.737 285 13 1 3813 4097 736927042 736926760 3.760000e-120 442.0
21 TraesCS3D01G445800 chr3B 92.793 222 16 0 613 834 736713749 736713528 5.110000e-84 322.0
22 TraesCS3D01G445800 chr3B 96.970 33 1 0 3742 3774 736927010 736926978 5.720000e-04 56.5
23 TraesCS3D01G445800 chr2A 89.630 135 11 3 638 770 127198186 127198319 7.040000e-38 169.0
24 TraesCS3D01G445800 chr7D 88.028 142 16 1 630 770 197927019 197927160 2.530000e-37 167.0
25 TraesCS3D01G445800 chr2D 85.987 157 19 3 613 767 122864105 122864260 9.110000e-37 165.0
26 TraesCS3D01G445800 chr7B 88.722 133 13 2 631 761 453623302 453623434 1.180000e-35 161.0
27 TraesCS3D01G445800 chr1D 86.713 143 17 2 638 779 7349723 7349864 1.520000e-34 158.0
28 TraesCS3D01G445800 chr2B 83.333 168 26 2 604 770 306886227 306886061 1.970000e-33 154.0
29 TraesCS3D01G445800 chr6B 84.967 153 20 3 617 768 692229349 692229199 7.090000e-33 152.0
30 TraesCS3D01G445800 chr5B 95.349 43 2 0 3621 3663 96887033 96886991 7.350000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G445800 chr3D 554775304 554779400 4096 True 1559.16 7566 98.75000 1 4097 5 chr3D.!!$R3 4096
1 TraesCS3D01G445800 chr3D 554766087 554768932 2845 True 4807.00 4807 97.09800 874 3731 1 chr3D.!!$R2 2857
2 TraesCS3D01G445800 chr3D 554730839 554731576 737 True 294.00 294 74.08900 2111 2842 1 chr3D.!!$R1 731
3 TraesCS3D01G445800 chr3A 691040332 691044023 3691 True 5818.00 5818 95.05500 17 3728 1 chr3A.!!$R1 3711
4 TraesCS3D01G445800 chr3A 690997009 690999536 2527 True 645.50 989 79.12700 1027 3540 2 chr3A.!!$R3 2513
5 TraesCS3D01G445800 chrUn 45262280 45264007 1727 False 2780.00 2780 95.54800 874 2624 1 chrUn.!!$F1 1750
6 TraesCS3D01G445800 chrUn 406194386 406195085 699 False 1230.00 1230 98.42900 3030 3728 1 chrUn.!!$F2 698
7 TraesCS3D01G445800 chr3B 736710829 736714270 3441 True 1359.00 2182 94.35825 61 3726 4 chr3B.!!$R1 3665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 184 0.462759 GGAAGCTAATGTGCGAGCCT 60.463 55.000 0.0 0.0 39.65 4.58 F
803 813 1.751927 CATGCCAGTGGAGCCCTTC 60.752 63.158 15.2 0.0 0.00 3.46 F
2215 2231 1.604278 GTGTCTCTGACTGGGCAAAAC 59.396 52.381 0.0 0.0 33.15 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 1093 2.762535 AACCTTCCACACGGTCTATG 57.237 50.0 0.0 0.0 31.87 2.23 R
2528 2547 2.106477 TGCACCGCATAGTTCATCAA 57.894 45.0 0.0 0.0 31.71 2.57 R
4028 4134 0.107945 CAGCACCTCTCCTTACCTGC 60.108 60.0 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 111 4.424711 TTGGTGCTCCCGATGGGC 62.425 66.667 1.59 0.00 43.94 5.36
179 182 0.933796 GAGGAAGCTAATGTGCGAGC 59.066 55.000 0.00 0.00 39.08 5.03
181 184 0.462759 GGAAGCTAATGTGCGAGCCT 60.463 55.000 0.00 0.00 39.65 4.58
206 209 8.579850 TCACATTCATTTTAAGCCTAGTCATT 57.420 30.769 0.00 0.00 0.00 2.57
337 340 4.445735 GGCTAGGCATAGTGGGTGATTTTA 60.446 45.833 12.16 0.00 0.00 1.52
402 405 7.444299 AGTTCATTGTGCTAATTCCAAACAAT 58.556 30.769 0.00 0.00 41.01 2.71
524 534 2.143876 TGGATCACACGATCTCCTCA 57.856 50.000 0.00 0.00 46.30 3.86
616 626 7.411274 CAACGTTTAATGTGGTTCAGAAACTA 58.589 34.615 0.00 0.00 35.48 2.24
709 719 7.038048 TGAGTGAACAAACACATTAAAATGCA 58.962 30.769 2.60 0.00 42.45 3.96
803 813 1.751927 CATGCCAGTGGAGCCCTTC 60.752 63.158 15.20 0.00 0.00 3.46
997 1010 8.250143 TCTACCTGAATAACATATGCAGAAGA 57.750 34.615 1.58 6.61 0.00 2.87
1080 1093 2.206576 ATGTGGAACCAAGGAAGAGC 57.793 50.000 0.00 0.00 34.36 4.09
1358 1371 2.030805 AGCTCGATCAAAACAAGCAACC 60.031 45.455 0.00 0.00 35.42 3.77
1479 1492 3.181466 GCCTTGTTCCTTTCATTGGTTGT 60.181 43.478 0.00 0.00 0.00 3.32
1514 1527 8.421002 CGTGGGATTTCTATTGGGAATTAAAAT 58.579 33.333 0.00 0.00 0.00 1.82
1518 1531 7.661437 GGATTTCTATTGGGAATTAAAATGGCC 59.339 37.037 0.00 0.00 0.00 5.36
1539 1552 3.281240 CAGTGGGGTGCTGCATTC 58.719 61.111 5.27 1.18 0.00 2.67
2215 2231 1.604278 GTGTCTCTGACTGGGCAAAAC 59.396 52.381 0.00 0.00 33.15 2.43
2528 2547 3.875727 GCACTAATGAGACACAGCATGAT 59.124 43.478 0.00 0.00 39.69 2.45
2560 2579 1.307355 CGGTGCATGCCAGATCAACA 61.307 55.000 16.68 0.00 0.00 3.33
2639 2658 6.042777 GTGAGATCTCGGATACAATCAAACA 58.957 40.000 17.76 0.00 0.00 2.83
2962 2993 1.078143 GCAGATTTCTGGGCCGAGT 60.078 57.895 15.09 0.00 43.94 4.18
3153 3243 4.974368 GAGCTACACTCAGTCTATGTGT 57.026 45.455 12.66 12.66 45.49 3.72
3155 3245 6.627395 GAGCTACACTCAGTCTATGTGTAT 57.373 41.667 14.00 4.86 45.49 2.29
3156 3246 6.627395 AGCTACACTCAGTCTATGTGTATC 57.373 41.667 14.00 11.37 43.38 2.24
3157 3247 5.533154 AGCTACACTCAGTCTATGTGTATCC 59.467 44.000 14.00 10.13 43.38 2.59
3158 3248 5.299531 GCTACACTCAGTCTATGTGTATCCA 59.700 44.000 14.00 0.31 43.38 3.41
3159 3249 6.015856 GCTACACTCAGTCTATGTGTATCCAT 60.016 42.308 14.00 0.00 43.38 3.41
3160 3250 6.398234 ACACTCAGTCTATGTGTATCCATC 57.602 41.667 7.91 0.00 42.26 3.51
3161 3251 5.893824 ACACTCAGTCTATGTGTATCCATCA 59.106 40.000 7.91 0.00 42.26 3.07
3162 3252 6.183360 ACACTCAGTCTATGTGTATCCATCAC 60.183 42.308 7.91 0.00 42.26 3.06
3164 3254 6.381133 ACTCAGTCTATGTGTATCCATCACAA 59.619 38.462 2.99 0.00 46.47 3.33
3165 3255 7.070447 ACTCAGTCTATGTGTATCCATCACAAT 59.930 37.037 2.99 0.00 46.47 2.71
3166 3256 7.795047 TCAGTCTATGTGTATCCATCACAATT 58.205 34.615 2.99 0.00 46.47 2.32
3167 3257 8.267183 TCAGTCTATGTGTATCCATCACAATTT 58.733 33.333 2.99 0.00 46.47 1.82
3168 3258 8.340443 CAGTCTATGTGTATCCATCACAATTTG 58.660 37.037 2.99 0.00 46.47 2.32
3169 3259 8.049117 AGTCTATGTGTATCCATCACAATTTGT 58.951 33.333 0.00 0.00 46.47 2.83
3170 3260 9.325198 GTCTATGTGTATCCATCACAATTTGTA 57.675 33.333 0.86 0.00 46.47 2.41
3290 3382 5.039333 GGTGTACGCTTGTACTACTAATGG 58.961 45.833 6.35 0.00 46.96 3.16
3316 3416 4.202040 CCATGTGGCTTGGTTATGTATGTG 60.202 45.833 0.00 0.00 0.00 3.21
3402 3502 5.163550 CCTCGTGGAGTTGTGATATGAACTA 60.164 44.000 0.00 0.00 32.47 2.24
3403 3503 6.461648 CCTCGTGGAGTTGTGATATGAACTAT 60.462 42.308 0.00 0.00 32.47 2.12
3404 3504 6.873997 TCGTGGAGTTGTGATATGAACTATT 58.126 36.000 0.00 0.00 32.47 1.73
3610 3716 4.256920 AGCAAAAGAGTACATACAGGCTG 58.743 43.478 14.16 14.16 0.00 4.85
3612 3718 4.331168 GCAAAAGAGTACATACAGGCTGAG 59.669 45.833 23.66 12.80 0.00 3.35
3728 3834 7.202526 CGTTTATTGCATCATTTACATCCCTT 58.797 34.615 0.00 0.00 0.00 3.95
3735 3841 8.737168 TGCATCATTTACATCCCTTATATAGC 57.263 34.615 0.00 0.00 0.00 2.97
3736 3842 8.328014 TGCATCATTTACATCCCTTATATAGCA 58.672 33.333 0.00 0.00 0.00 3.49
3737 3843 9.347240 GCATCATTTACATCCCTTATATAGCAT 57.653 33.333 0.00 0.00 0.00 3.79
3743 3849 9.685276 TTTACATCCCTTATATAGCATGATTGG 57.315 33.333 0.00 0.00 0.00 3.16
3744 3850 7.515004 ACATCCCTTATATAGCATGATTGGA 57.485 36.000 0.00 0.00 0.00 3.53
3745 3851 7.932134 ACATCCCTTATATAGCATGATTGGAA 58.068 34.615 0.00 0.00 0.00 3.53
3746 3852 7.831193 ACATCCCTTATATAGCATGATTGGAAC 59.169 37.037 0.00 0.00 0.00 3.62
3747 3853 7.574021 TCCCTTATATAGCATGATTGGAACT 57.426 36.000 0.00 0.00 0.00 3.01
3748 3854 7.624549 TCCCTTATATAGCATGATTGGAACTC 58.375 38.462 0.00 0.00 0.00 3.01
3749 3855 7.459125 TCCCTTATATAGCATGATTGGAACTCT 59.541 37.037 0.00 0.00 0.00 3.24
3750 3856 7.551974 CCCTTATATAGCATGATTGGAACTCTG 59.448 40.741 0.00 0.00 0.00 3.35
3751 3857 8.316946 CCTTATATAGCATGATTGGAACTCTGA 58.683 37.037 0.00 0.00 0.00 3.27
3752 3858 9.716531 CTTATATAGCATGATTGGAACTCTGAA 57.283 33.333 0.00 0.00 0.00 3.02
3755 3861 7.893124 ATAGCATGATTGGAACTCTGAAATT 57.107 32.000 0.00 0.00 0.00 1.82
3756 3862 8.985315 ATAGCATGATTGGAACTCTGAAATTA 57.015 30.769 0.00 0.00 0.00 1.40
3757 3863 7.093322 AGCATGATTGGAACTCTGAAATTAC 57.907 36.000 0.00 0.00 0.00 1.89
3758 3864 6.888632 AGCATGATTGGAACTCTGAAATTACT 59.111 34.615 0.00 0.00 0.00 2.24
3759 3865 6.971184 GCATGATTGGAACTCTGAAATTACTG 59.029 38.462 0.00 0.00 0.00 2.74
3760 3866 6.500684 TGATTGGAACTCTGAAATTACTGC 57.499 37.500 0.00 0.00 0.00 4.40
3761 3867 5.415701 TGATTGGAACTCTGAAATTACTGCC 59.584 40.000 0.00 0.00 0.00 4.85
3762 3868 4.365514 TGGAACTCTGAAATTACTGCCA 57.634 40.909 0.00 0.00 0.00 4.92
3763 3869 4.724399 TGGAACTCTGAAATTACTGCCAA 58.276 39.130 0.00 0.00 0.00 4.52
3764 3870 5.136828 TGGAACTCTGAAATTACTGCCAAA 58.863 37.500 0.00 0.00 0.00 3.28
3765 3871 5.774690 TGGAACTCTGAAATTACTGCCAAAT 59.225 36.000 0.00 0.00 0.00 2.32
3766 3872 6.267471 TGGAACTCTGAAATTACTGCCAAATT 59.733 34.615 0.00 0.00 0.00 1.82
3767 3873 7.450014 TGGAACTCTGAAATTACTGCCAAATTA 59.550 33.333 0.00 0.00 0.00 1.40
3768 3874 8.470002 GGAACTCTGAAATTACTGCCAAATTAT 58.530 33.333 0.00 0.00 0.00 1.28
3769 3875 9.294030 GAACTCTGAAATTACTGCCAAATTATG 57.706 33.333 0.00 0.00 0.00 1.90
3770 3876 8.579850 ACTCTGAAATTACTGCCAAATTATGA 57.420 30.769 0.00 0.00 0.00 2.15
3771 3877 9.193806 ACTCTGAAATTACTGCCAAATTATGAT 57.806 29.630 0.00 0.00 0.00 2.45
3772 3878 9.459640 CTCTGAAATTACTGCCAAATTATGATG 57.540 33.333 0.00 0.00 0.00 3.07
3773 3879 9.187996 TCTGAAATTACTGCCAAATTATGATGA 57.812 29.630 0.00 0.00 0.00 2.92
3774 3880 9.806203 CTGAAATTACTGCCAAATTATGATGAA 57.194 29.630 0.00 0.00 0.00 2.57
3778 3884 9.590451 AATTACTGCCAAATTATGATGAAACTG 57.410 29.630 0.00 0.00 0.00 3.16
3779 3885 5.413499 ACTGCCAAATTATGATGAAACTGC 58.587 37.500 0.00 0.00 0.00 4.40
3780 3886 4.757594 TGCCAAATTATGATGAAACTGCC 58.242 39.130 0.00 0.00 0.00 4.85
3781 3887 4.222366 TGCCAAATTATGATGAAACTGCCA 59.778 37.500 0.00 0.00 0.00 4.92
3782 3888 5.177326 GCCAAATTATGATGAAACTGCCAA 58.823 37.500 0.00 0.00 0.00 4.52
3783 3889 5.642919 GCCAAATTATGATGAAACTGCCAAA 59.357 36.000 0.00 0.00 0.00 3.28
3784 3890 6.316890 GCCAAATTATGATGAAACTGCCAAAT 59.683 34.615 0.00 0.00 0.00 2.32
3785 3891 7.148205 GCCAAATTATGATGAAACTGCCAAATT 60.148 33.333 0.00 0.00 0.00 1.82
3786 3892 9.381033 CCAAATTATGATGAAACTGCCAAATTA 57.619 29.630 0.00 0.00 0.00 1.40
3792 3898 8.657074 ATGATGAAACTGCCAAATTATGATTG 57.343 30.769 0.00 0.00 0.00 2.67
3810 3916 6.500684 TGATTGGAACTCTGAAATTACTGC 57.499 37.500 0.00 0.00 0.00 4.40
3811 3917 5.415701 TGATTGGAACTCTGAAATTACTGCC 59.584 40.000 0.00 0.00 0.00 4.85
3812 3918 4.365514 TGGAACTCTGAAATTACTGCCA 57.634 40.909 0.00 0.00 0.00 4.92
3813 3919 4.724399 TGGAACTCTGAAATTACTGCCAA 58.276 39.130 0.00 0.00 0.00 4.52
3814 3920 5.324409 TGGAACTCTGAAATTACTGCCAAT 58.676 37.500 0.00 0.00 0.00 3.16
3815 3921 6.480763 TGGAACTCTGAAATTACTGCCAATA 58.519 36.000 0.00 0.00 0.00 1.90
3816 3922 7.118723 TGGAACTCTGAAATTACTGCCAATAT 58.881 34.615 0.00 0.00 0.00 1.28
3817 3923 7.615365 TGGAACTCTGAAATTACTGCCAATATT 59.385 33.333 0.00 0.00 0.00 1.28
3818 3924 8.470002 GGAACTCTGAAATTACTGCCAATATTT 58.530 33.333 0.00 0.00 0.00 1.40
3840 3946 3.012934 ACTTACCAAAGTTGTGCCTGT 57.987 42.857 0.00 0.00 43.60 4.00
3841 3947 2.687935 ACTTACCAAAGTTGTGCCTGTG 59.312 45.455 0.00 0.00 43.60 3.66
3842 3948 1.686355 TACCAAAGTTGTGCCTGTGG 58.314 50.000 0.00 0.00 44.29 4.17
3852 3958 2.113986 GCCTGTGGCTGTGGAACT 59.886 61.111 0.73 0.00 46.69 3.01
3853 3959 1.968540 GCCTGTGGCTGTGGAACTC 60.969 63.158 0.73 0.00 46.69 3.01
3854 3960 1.757306 CCTGTGGCTGTGGAACTCT 59.243 57.895 0.00 0.00 38.04 3.24
3855 3961 0.604780 CCTGTGGCTGTGGAACTCTG 60.605 60.000 0.00 0.00 38.04 3.35
3856 3962 0.394192 CTGTGGCTGTGGAACTCTGA 59.606 55.000 0.00 0.00 38.04 3.27
3857 3963 0.836606 TGTGGCTGTGGAACTCTGAA 59.163 50.000 0.00 0.00 38.04 3.02
3858 3964 1.211703 TGTGGCTGTGGAACTCTGAAA 59.788 47.619 0.00 0.00 38.04 2.69
3859 3965 2.158623 TGTGGCTGTGGAACTCTGAAAT 60.159 45.455 0.00 0.00 38.04 2.17
3860 3966 2.887152 GTGGCTGTGGAACTCTGAAATT 59.113 45.455 0.00 0.00 38.04 1.82
3861 3967 4.072131 GTGGCTGTGGAACTCTGAAATTA 58.928 43.478 0.00 0.00 38.04 1.40
3862 3968 4.072131 TGGCTGTGGAACTCTGAAATTAC 58.928 43.478 0.00 0.00 38.04 1.89
3863 3969 4.202461 TGGCTGTGGAACTCTGAAATTACT 60.202 41.667 0.00 0.00 38.04 2.24
3864 3970 4.154918 GGCTGTGGAACTCTGAAATTACTG 59.845 45.833 0.00 0.00 38.04 2.74
3865 3971 4.378874 GCTGTGGAACTCTGAAATTACTGC 60.379 45.833 0.00 0.00 38.04 4.40
3866 3972 4.072131 TGTGGAACTCTGAAATTACTGCC 58.928 43.478 0.00 0.00 38.04 4.85
3867 3973 4.072131 GTGGAACTCTGAAATTACTGCCA 58.928 43.478 0.00 0.00 0.00 4.92
3868 3974 4.518970 GTGGAACTCTGAAATTACTGCCAA 59.481 41.667 0.00 0.00 0.00 4.52
3869 3975 5.009610 GTGGAACTCTGAAATTACTGCCAAA 59.990 40.000 0.00 0.00 0.00 3.28
3870 3976 5.774690 TGGAACTCTGAAATTACTGCCAAAT 59.225 36.000 0.00 0.00 0.00 2.32
3871 3977 6.267471 TGGAACTCTGAAATTACTGCCAAATT 59.733 34.615 0.00 0.00 0.00 1.82
3872 3978 7.450014 TGGAACTCTGAAATTACTGCCAAATTA 59.550 33.333 0.00 0.00 0.00 1.40
3873 3979 8.470002 GGAACTCTGAAATTACTGCCAAATTAT 58.530 33.333 0.00 0.00 0.00 1.28
3874 3980 9.294030 GAACTCTGAAATTACTGCCAAATTATG 57.706 33.333 0.00 0.00 0.00 1.90
3875 3981 8.579850 ACTCTGAAATTACTGCCAAATTATGA 57.420 30.769 0.00 0.00 0.00 2.15
3876 3982 9.193806 ACTCTGAAATTACTGCCAAATTATGAT 57.806 29.630 0.00 0.00 0.00 2.45
3877 3983 9.459640 CTCTGAAATTACTGCCAAATTATGATG 57.540 33.333 0.00 0.00 0.00 3.07
3878 3984 9.187996 TCTGAAATTACTGCCAAATTATGATGA 57.812 29.630 0.00 0.00 0.00 2.92
3879 3985 9.241317 CTGAAATTACTGCCAAATTATGATGAC 57.759 33.333 0.00 0.00 0.00 3.06
3880 3986 7.914871 TGAAATTACTGCCAAATTATGATGACG 59.085 33.333 0.00 0.00 0.00 4.35
3881 3987 7.566760 AATTACTGCCAAATTATGATGACGA 57.433 32.000 0.00 0.00 0.00 4.20
3882 3988 6.993786 TTACTGCCAAATTATGATGACGAA 57.006 33.333 0.00 0.00 0.00 3.85
3883 3989 5.490139 ACTGCCAAATTATGATGACGAAG 57.510 39.130 0.00 0.00 0.00 3.79
3884 3990 4.336433 ACTGCCAAATTATGATGACGAAGG 59.664 41.667 0.00 0.00 0.00 3.46
3885 3991 4.522114 TGCCAAATTATGATGACGAAGGA 58.478 39.130 0.00 0.00 0.00 3.36
3886 3992 4.335315 TGCCAAATTATGATGACGAAGGAC 59.665 41.667 0.00 0.00 0.00 3.85
3887 3993 4.335315 GCCAAATTATGATGACGAAGGACA 59.665 41.667 0.00 0.00 0.00 4.02
3888 3994 5.730568 GCCAAATTATGATGACGAAGGACAC 60.731 44.000 0.00 0.00 0.00 3.67
3889 3995 5.586243 CCAAATTATGATGACGAAGGACACT 59.414 40.000 0.00 0.00 0.00 3.55
3890 3996 6.457392 CCAAATTATGATGACGAAGGACACTG 60.457 42.308 0.00 0.00 0.00 3.66
3891 3997 5.598416 ATTATGATGACGAAGGACACTGA 57.402 39.130 0.00 0.00 0.00 3.41
3892 3998 3.516981 ATGATGACGAAGGACACTGAG 57.483 47.619 0.00 0.00 0.00 3.35
3893 3999 2.239400 TGATGACGAAGGACACTGAGT 58.761 47.619 0.00 0.00 0.00 3.41
3894 4000 2.628178 TGATGACGAAGGACACTGAGTT 59.372 45.455 0.00 0.00 0.00 3.01
3895 4001 2.509052 TGACGAAGGACACTGAGTTG 57.491 50.000 0.00 0.00 0.00 3.16
3896 4002 1.068588 TGACGAAGGACACTGAGTTGG 59.931 52.381 0.00 0.00 0.00 3.77
3897 4003 1.068741 GACGAAGGACACTGAGTTGGT 59.931 52.381 0.00 0.00 0.00 3.67
3898 4004 1.068741 ACGAAGGACACTGAGTTGGTC 59.931 52.381 0.00 0.00 0.00 4.02
3899 4005 1.068588 CGAAGGACACTGAGTTGGTCA 59.931 52.381 5.58 0.00 33.26 4.02
3900 4006 2.484889 GAAGGACACTGAGTTGGTCAC 58.515 52.381 5.58 0.00 33.26 3.67
3901 4007 0.759346 AGGACACTGAGTTGGTCACC 59.241 55.000 5.58 0.00 33.26 4.02
3902 4008 0.468226 GGACACTGAGTTGGTCACCA 59.532 55.000 0.00 0.00 33.26 4.17
3903 4009 1.583054 GACACTGAGTTGGTCACCAC 58.417 55.000 0.00 0.00 30.78 4.16
3904 4010 0.908910 ACACTGAGTTGGTCACCACA 59.091 50.000 0.00 0.00 30.78 4.17
3905 4011 1.490490 ACACTGAGTTGGTCACCACAT 59.510 47.619 0.00 0.00 30.78 3.21
3906 4012 2.703536 ACACTGAGTTGGTCACCACATA 59.296 45.455 0.00 0.00 30.78 2.29
3907 4013 3.327757 ACACTGAGTTGGTCACCACATAT 59.672 43.478 0.00 0.00 30.78 1.78
3908 4014 3.935203 CACTGAGTTGGTCACCACATATC 59.065 47.826 0.00 0.00 30.78 1.63
3909 4015 3.582647 ACTGAGTTGGTCACCACATATCA 59.417 43.478 0.00 0.00 30.78 2.15
3910 4016 4.041567 ACTGAGTTGGTCACCACATATCAA 59.958 41.667 0.00 0.00 30.78 2.57
3911 4017 4.578871 TGAGTTGGTCACCACATATCAAG 58.421 43.478 0.00 0.00 30.78 3.02
3912 4018 4.041567 TGAGTTGGTCACCACATATCAAGT 59.958 41.667 0.00 0.00 30.78 3.16
3913 4019 4.985538 AGTTGGTCACCACATATCAAGTT 58.014 39.130 0.00 0.00 30.78 2.66
3914 4020 6.121776 AGTTGGTCACCACATATCAAGTTA 57.878 37.500 0.00 0.00 30.78 2.24
3915 4021 6.721318 AGTTGGTCACCACATATCAAGTTAT 58.279 36.000 0.00 0.00 30.78 1.89
3916 4022 7.857456 AGTTGGTCACCACATATCAAGTTATA 58.143 34.615 0.00 0.00 30.78 0.98
3917 4023 8.325787 AGTTGGTCACCACATATCAAGTTATAA 58.674 33.333 0.00 0.00 30.78 0.98
3918 4024 9.120538 GTTGGTCACCACATATCAAGTTATAAT 57.879 33.333 0.00 0.00 30.78 1.28
3919 4025 9.693739 TTGGTCACCACATATCAAGTTATAATT 57.306 29.630 0.00 0.00 30.78 1.40
3920 4026 9.693739 TGGTCACCACATATCAAGTTATAATTT 57.306 29.630 0.00 0.00 0.00 1.82
3921 4027 9.950680 GGTCACCACATATCAAGTTATAATTTG 57.049 33.333 13.08 13.08 0.00 2.32
3922 4028 9.450807 GTCACCACATATCAAGTTATAATTTGC 57.549 33.333 14.17 0.00 0.00 3.68
3923 4029 8.341903 TCACCACATATCAAGTTATAATTTGCG 58.658 33.333 14.17 6.73 0.00 4.85
3924 4030 8.341903 CACCACATATCAAGTTATAATTTGCGA 58.658 33.333 14.17 6.40 0.00 5.10
3925 4031 8.898761 ACCACATATCAAGTTATAATTTGCGAA 58.101 29.630 14.17 4.53 0.00 4.70
3926 4032 9.169468 CCACATATCAAGTTATAATTTGCGAAC 57.831 33.333 14.17 0.00 0.00 3.95
3927 4033 9.935682 CACATATCAAGTTATAATTTGCGAACT 57.064 29.630 14.17 0.00 33.60 3.01
3929 4035 9.599322 CATATCAAGTTATAATTTGCGAACTCC 57.401 33.333 14.17 0.00 30.98 3.85
3930 4036 7.865706 ATCAAGTTATAATTTGCGAACTCCT 57.134 32.000 14.17 0.00 30.98 3.69
3931 4037 8.958119 ATCAAGTTATAATTTGCGAACTCCTA 57.042 30.769 14.17 0.00 30.98 2.94
3932 4038 8.780846 TCAAGTTATAATTTGCGAACTCCTAA 57.219 30.769 14.17 0.00 30.98 2.69
3933 4039 9.391006 TCAAGTTATAATTTGCGAACTCCTAAT 57.609 29.630 14.17 0.00 30.98 1.73
3939 4045 6.436843 AATTTGCGAACTCCTAATTAGTGG 57.563 37.500 11.50 6.14 0.00 4.00
3940 4046 3.536956 TGCGAACTCCTAATTAGTGGG 57.463 47.619 11.50 5.65 0.00 4.61
3941 4047 3.101437 TGCGAACTCCTAATTAGTGGGA 58.899 45.455 11.50 2.08 0.00 4.37
3942 4048 3.516300 TGCGAACTCCTAATTAGTGGGAA 59.484 43.478 11.50 0.00 0.00 3.97
3943 4049 4.020039 TGCGAACTCCTAATTAGTGGGAAA 60.020 41.667 11.50 0.00 0.00 3.13
3944 4050 4.331992 GCGAACTCCTAATTAGTGGGAAAC 59.668 45.833 11.50 0.00 0.00 2.78
3945 4051 5.731591 CGAACTCCTAATTAGTGGGAAACT 58.268 41.667 11.50 0.00 43.40 2.66
3946 4052 6.171213 CGAACTCCTAATTAGTGGGAAACTT 58.829 40.000 11.50 0.00 40.56 2.66
3947 4053 7.325694 CGAACTCCTAATTAGTGGGAAACTTA 58.674 38.462 11.50 0.00 40.56 2.24
3948 4054 7.985752 CGAACTCCTAATTAGTGGGAAACTTAT 59.014 37.037 11.50 0.00 40.56 1.73
3949 4055 9.110502 GAACTCCTAATTAGTGGGAAACTTATG 57.889 37.037 11.50 0.00 40.56 1.90
3950 4056 8.388656 ACTCCTAATTAGTGGGAAACTTATGA 57.611 34.615 11.50 0.00 40.56 2.15
3951 4057 9.004231 ACTCCTAATTAGTGGGAAACTTATGAT 57.996 33.333 11.50 0.00 40.56 2.45
3952 4058 9.277783 CTCCTAATTAGTGGGAAACTTATGATG 57.722 37.037 11.50 0.00 40.56 3.07
3953 4059 7.719633 TCCTAATTAGTGGGAAACTTATGATGC 59.280 37.037 11.50 0.00 40.56 3.91
3954 4060 7.502226 CCTAATTAGTGGGAAACTTATGATGCA 59.498 37.037 11.50 0.00 40.56 3.96
3955 4061 7.902920 AATTAGTGGGAAACTTATGATGCAT 57.097 32.000 0.00 0.00 40.56 3.96
3956 4062 6.698008 TTAGTGGGAAACTTATGATGCATG 57.302 37.500 2.46 0.00 40.56 4.06
3957 4063 4.858850 AGTGGGAAACTTATGATGCATGA 58.141 39.130 2.46 0.00 34.57 3.07
3958 4064 5.263599 AGTGGGAAACTTATGATGCATGAA 58.736 37.500 2.46 0.00 34.57 2.57
3959 4065 5.359009 AGTGGGAAACTTATGATGCATGAAG 59.641 40.000 2.46 7.48 34.57 3.02
3960 4066 5.126061 GTGGGAAACTTATGATGCATGAAGT 59.874 40.000 2.46 8.17 33.60 3.01
3961 4067 5.357878 TGGGAAACTTATGATGCATGAAGTC 59.642 40.000 2.46 0.46 30.98 3.01
3962 4068 5.591877 GGGAAACTTATGATGCATGAAGTCT 59.408 40.000 2.46 0.00 30.98 3.24
3963 4069 6.238593 GGGAAACTTATGATGCATGAAGTCTC 60.239 42.308 2.46 7.18 30.98 3.36
3964 4070 6.541641 GGAAACTTATGATGCATGAAGTCTCT 59.458 38.462 2.46 0.04 30.98 3.10
3965 4071 7.254727 GGAAACTTATGATGCATGAAGTCTCTC 60.255 40.741 2.46 8.40 30.98 3.20
3966 4072 6.231258 ACTTATGATGCATGAAGTCTCTCA 57.769 37.500 2.46 0.00 0.00 3.27
3967 4073 6.047870 ACTTATGATGCATGAAGTCTCTCAC 58.952 40.000 2.46 0.00 0.00 3.51
3968 4074 3.967332 TGATGCATGAAGTCTCTCACA 57.033 42.857 2.46 0.00 0.00 3.58
3969 4075 4.482952 TGATGCATGAAGTCTCTCACAT 57.517 40.909 2.46 0.00 0.00 3.21
3970 4076 4.189231 TGATGCATGAAGTCTCTCACATG 58.811 43.478 2.46 0.00 41.72 3.21
3971 4077 3.967332 TGCATGAAGTCTCTCACATGA 57.033 42.857 0.00 0.00 41.45 3.07
3972 4078 3.593096 TGCATGAAGTCTCTCACATGAC 58.407 45.455 0.00 0.00 41.45 3.06
3973 4079 2.935201 GCATGAAGTCTCTCACATGACC 59.065 50.000 0.00 0.00 41.45 4.02
3974 4080 3.369261 GCATGAAGTCTCTCACATGACCT 60.369 47.826 0.00 0.00 41.45 3.85
3975 4081 4.829968 CATGAAGTCTCTCACATGACCTT 58.170 43.478 0.00 0.00 41.45 3.50
3976 4082 5.625426 GCATGAAGTCTCTCACATGACCTTA 60.625 44.000 0.00 0.00 41.45 2.69
3977 4083 5.392767 TGAAGTCTCTCACATGACCTTAC 57.607 43.478 0.00 0.00 34.02 2.34
3978 4084 4.220821 TGAAGTCTCTCACATGACCTTACC 59.779 45.833 0.00 0.00 34.02 2.85
3979 4085 4.054359 AGTCTCTCACATGACCTTACCT 57.946 45.455 0.00 0.00 34.02 3.08
3980 4086 4.421131 AGTCTCTCACATGACCTTACCTT 58.579 43.478 0.00 0.00 34.02 3.50
3981 4087 4.841246 AGTCTCTCACATGACCTTACCTTT 59.159 41.667 0.00 0.00 34.02 3.11
3982 4088 5.308237 AGTCTCTCACATGACCTTACCTTTT 59.692 40.000 0.00 0.00 34.02 2.27
3983 4089 5.409826 GTCTCTCACATGACCTTACCTTTTG 59.590 44.000 0.00 0.00 0.00 2.44
3984 4090 4.072131 TCTCACATGACCTTACCTTTTGC 58.928 43.478 0.00 0.00 0.00 3.68
3985 4091 4.074970 CTCACATGACCTTACCTTTTGCT 58.925 43.478 0.00 0.00 0.00 3.91
3986 4092 3.820467 TCACATGACCTTACCTTTTGCTG 59.180 43.478 0.00 0.00 0.00 4.41
3987 4093 2.558359 ACATGACCTTACCTTTTGCTGC 59.442 45.455 0.00 0.00 0.00 5.25
3988 4094 2.656947 TGACCTTACCTTTTGCTGCT 57.343 45.000 0.00 0.00 0.00 4.24
3989 4095 2.229792 TGACCTTACCTTTTGCTGCTG 58.770 47.619 0.00 0.00 0.00 4.41
3990 4096 1.541588 GACCTTACCTTTTGCTGCTGG 59.458 52.381 0.00 0.73 0.00 4.85
3991 4097 0.890683 CCTTACCTTTTGCTGCTGGG 59.109 55.000 0.00 0.39 0.00 4.45
3992 4098 0.890683 CTTACCTTTTGCTGCTGGGG 59.109 55.000 0.00 0.75 0.00 4.96
3993 4099 0.480690 TTACCTTTTGCTGCTGGGGA 59.519 50.000 0.00 0.00 0.00 4.81
3994 4100 0.704076 TACCTTTTGCTGCTGGGGAT 59.296 50.000 0.00 0.00 0.00 3.85
3995 4101 0.704076 ACCTTTTGCTGCTGGGGATA 59.296 50.000 0.00 0.00 0.00 2.59
3996 4102 1.288932 ACCTTTTGCTGCTGGGGATAT 59.711 47.619 0.00 0.00 0.00 1.63
3997 4103 2.513738 ACCTTTTGCTGCTGGGGATATA 59.486 45.455 0.00 0.00 0.00 0.86
3998 4104 3.152341 CCTTTTGCTGCTGGGGATATAG 58.848 50.000 0.00 0.00 0.00 1.31
3999 4105 2.276732 TTTGCTGCTGGGGATATAGC 57.723 50.000 0.00 0.00 40.29 2.97
4000 4106 1.139439 TTGCTGCTGGGGATATAGCA 58.861 50.000 0.00 0.00 46.79 3.49
4011 4117 8.970020 TGCTGGGGATATAGCATTTAATTATTG 58.030 33.333 0.00 0.00 44.36 1.90
4012 4118 8.971073 GCTGGGGATATAGCATTTAATTATTGT 58.029 33.333 0.00 0.00 39.67 2.71
4023 4129 9.143631 AGCATTTAATTATTGTCTGCTTTGTTC 57.856 29.630 4.80 0.00 35.06 3.18
4024 4130 9.143631 GCATTTAATTATTGTCTGCTTTGTTCT 57.856 29.630 0.00 0.00 0.00 3.01
4028 4134 7.935338 AATTATTGTCTGCTTTGTTCTGTTG 57.065 32.000 0.00 0.00 0.00 3.33
4029 4135 2.849880 TGTCTGCTTTGTTCTGTTGC 57.150 45.000 0.00 0.00 0.00 4.17
4030 4136 2.090760 TGTCTGCTTTGTTCTGTTGCA 58.909 42.857 0.00 0.00 0.00 4.08
4032 4138 2.129823 CTGCTTTGTTCTGTTGCAGG 57.870 50.000 0.00 0.00 44.95 4.85
4033 4139 1.406539 CTGCTTTGTTCTGTTGCAGGT 59.593 47.619 0.00 0.00 44.95 4.00
4034 4140 2.618241 CTGCTTTGTTCTGTTGCAGGTA 59.382 45.455 0.00 0.00 44.95 3.08
4035 4141 3.020274 TGCTTTGTTCTGTTGCAGGTAA 58.980 40.909 0.00 0.00 31.51 2.85
4036 4142 3.066621 TGCTTTGTTCTGTTGCAGGTAAG 59.933 43.478 0.00 0.00 31.51 2.34
4037 4143 3.550842 GCTTTGTTCTGTTGCAGGTAAGG 60.551 47.826 0.00 0.00 31.51 2.69
4038 4144 3.569194 TTGTTCTGTTGCAGGTAAGGA 57.431 42.857 0.00 0.00 31.51 3.36
4039 4145 3.126001 TGTTCTGTTGCAGGTAAGGAG 57.874 47.619 0.00 0.00 31.51 3.69
4040 4146 2.703536 TGTTCTGTTGCAGGTAAGGAGA 59.296 45.455 0.00 0.00 31.51 3.71
4041 4147 3.244215 TGTTCTGTTGCAGGTAAGGAGAG 60.244 47.826 0.00 0.00 31.51 3.20
4042 4148 1.902508 TCTGTTGCAGGTAAGGAGAGG 59.097 52.381 0.00 0.00 31.51 3.69
4043 4149 1.625818 CTGTTGCAGGTAAGGAGAGGT 59.374 52.381 0.00 0.00 0.00 3.85
4044 4150 1.347707 TGTTGCAGGTAAGGAGAGGTG 59.652 52.381 0.00 0.00 0.00 4.00
4045 4151 0.324943 TTGCAGGTAAGGAGAGGTGC 59.675 55.000 0.00 0.00 0.00 5.01
4046 4152 0.545309 TGCAGGTAAGGAGAGGTGCT 60.545 55.000 0.00 0.00 0.00 4.40
4047 4153 0.107945 GCAGGTAAGGAGAGGTGCTG 60.108 60.000 0.00 0.00 0.00 4.41
4048 4154 1.561643 CAGGTAAGGAGAGGTGCTGA 58.438 55.000 0.00 0.00 0.00 4.26
4049 4155 1.205893 CAGGTAAGGAGAGGTGCTGAC 59.794 57.143 0.00 0.00 0.00 3.51
4050 4156 1.203187 AGGTAAGGAGAGGTGCTGACA 60.203 52.381 0.00 0.00 26.26 3.58
4051 4157 1.205893 GGTAAGGAGAGGTGCTGACAG 59.794 57.143 0.00 0.00 26.26 3.51
4052 4158 2.171840 GTAAGGAGAGGTGCTGACAGA 58.828 52.381 6.65 0.00 0.00 3.41
4053 4159 1.265236 AAGGAGAGGTGCTGACAGAG 58.735 55.000 6.65 0.00 0.00 3.35
4069 4175 7.395190 CTGACAGAGCAGAGATATATAGCTT 57.605 40.000 1.31 0.00 38.14 3.74
4070 4176 7.155655 TGACAGAGCAGAGATATATAGCTTG 57.844 40.000 1.31 4.29 35.36 4.01
4071 4177 6.152492 TGACAGAGCAGAGATATATAGCTTGG 59.848 42.308 1.31 0.00 35.36 3.61
4072 4178 5.105392 ACAGAGCAGAGATATATAGCTTGGC 60.105 44.000 13.75 13.75 35.36 4.52
4073 4179 5.127519 CAGAGCAGAGATATATAGCTTGGCT 59.872 44.000 20.50 20.50 43.41 4.75
4074 4180 5.721000 AGAGCAGAGATATATAGCTTGGCTT 59.279 40.000 21.01 12.45 40.44 4.35
4075 4181 6.213195 AGAGCAGAGATATATAGCTTGGCTTT 59.787 38.462 21.01 15.70 40.44 3.51
4076 4182 6.405538 AGCAGAGATATATAGCTTGGCTTTC 58.594 40.000 16.84 0.00 40.44 2.62
4077 4183 6.213195 AGCAGAGATATATAGCTTGGCTTTCT 59.787 38.462 16.84 1.06 40.44 2.52
4078 4184 6.534793 GCAGAGATATATAGCTTGGCTTTCTC 59.465 42.308 14.13 6.78 40.44 2.87
4079 4185 7.609960 CAGAGATATATAGCTTGGCTTTCTCA 58.390 38.462 1.31 0.00 40.44 3.27
4080 4186 8.093307 CAGAGATATATAGCTTGGCTTTCTCAA 58.907 37.037 1.31 0.00 40.44 3.02
4081 4187 8.654997 AGAGATATATAGCTTGGCTTTCTCAAA 58.345 33.333 1.31 0.00 40.44 2.69
4082 4188 9.447157 GAGATATATAGCTTGGCTTTCTCAAAT 57.553 33.333 1.31 0.00 40.44 2.32
4090 4196 7.895759 AGCTTGGCTTTCTCAAATAATTTACA 58.104 30.769 0.00 0.00 33.89 2.41
4091 4197 8.031277 AGCTTGGCTTTCTCAAATAATTTACAG 58.969 33.333 0.00 0.00 33.89 2.74
4092 4198 7.814587 GCTTGGCTTTCTCAAATAATTTACAGT 59.185 33.333 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 143 5.072329 TCCTCTTTGACCAATCTTCACTTCT 59.928 40.000 0.00 0.00 0.00 2.85
179 182 6.599244 TGACTAGGCTTAAAATGAATGTGAGG 59.401 38.462 0.00 0.00 0.00 3.86
181 184 8.461222 CAATGACTAGGCTTAAAATGAATGTGA 58.539 33.333 0.00 0.00 0.00 3.58
187 190 7.994425 TCAACAATGACTAGGCTTAAAATGA 57.006 32.000 0.00 0.00 0.00 2.57
364 367 5.509501 GCACAATGAACTTCCCTTGAATTGA 60.510 40.000 7.74 0.00 0.00 2.57
436 439 8.971073 ACGATGGAAAATCTAGGAATTTTGATT 58.029 29.630 6.82 0.00 38.59 2.57
474 481 0.686769 ACTAGGACGATCCCCCACAC 60.687 60.000 0.00 0.00 37.19 3.82
667 677 9.114952 TGTTCACTCATTTCAGTTTGTATGTAA 57.885 29.630 0.00 0.00 0.00 2.41
803 813 0.037303 AGGGGACATGCACAACTGAG 59.963 55.000 0.00 0.00 0.00 3.35
997 1010 6.165577 GTGCTTCCATGGTTGTATTCATTTT 58.834 36.000 12.58 0.00 0.00 1.82
1080 1093 2.762535 AACCTTCCACACGGTCTATG 57.237 50.000 0.00 0.00 31.87 2.23
1317 1330 3.368843 GCTTCTGGACAGACATTGAGCTA 60.369 47.826 13.09 0.00 37.14 3.32
1358 1371 5.821470 AGACAATCACAATAGAGCTTCATGG 59.179 40.000 0.00 0.00 0.00 3.66
1479 1492 2.841215 AGAAATCCCACGACGAACAAA 58.159 42.857 0.00 0.00 0.00 2.83
1539 1552 3.488047 CCGATGATGGTTTGCTTGCTAAG 60.488 47.826 0.00 0.00 0.00 2.18
2215 2231 7.543172 TGCTACGTACTTACAAACAAAGGATAG 59.457 37.037 0.00 0.00 0.00 2.08
2528 2547 2.106477 TGCACCGCATAGTTCATCAA 57.894 45.000 0.00 0.00 31.71 2.57
2560 2579 5.105106 TGGTGTCGGTCAGTGTATATTCATT 60.105 40.000 0.00 0.00 0.00 2.57
2611 2630 5.772169 TGATTGTATCCGAGATCTCACAGAT 59.228 40.000 22.31 20.14 37.73 2.90
2962 2993 3.961484 TGGGGCAATATACACCATCAA 57.039 42.857 0.00 0.00 0.00 2.57
3155 3245 9.420118 AGCCTTAAATATACAAATTGTGATGGA 57.580 29.630 9.15 0.00 0.00 3.41
3159 3249 9.364989 GCAAAGCCTTAAATATACAAATTGTGA 57.635 29.630 9.15 0.00 0.00 3.58
3160 3250 8.320295 CGCAAAGCCTTAAATATACAAATTGTG 58.680 33.333 9.15 0.00 0.00 3.33
3161 3251 8.032451 ACGCAAAGCCTTAAATATACAAATTGT 58.968 29.630 3.43 3.43 0.00 2.71
3162 3252 8.406172 ACGCAAAGCCTTAAATATACAAATTG 57.594 30.769 0.00 0.00 0.00 2.32
3163 3253 8.996024 AACGCAAAGCCTTAAATATACAAATT 57.004 26.923 0.00 0.00 0.00 1.82
3164 3254 8.996024 AAACGCAAAGCCTTAAATATACAAAT 57.004 26.923 0.00 0.00 0.00 2.32
3166 3256 9.509855 CATAAACGCAAAGCCTTAAATATACAA 57.490 29.630 0.00 0.00 0.00 2.41
3167 3257 8.894731 TCATAAACGCAAAGCCTTAAATATACA 58.105 29.630 0.00 0.00 0.00 2.29
3168 3258 9.893305 ATCATAAACGCAAAGCCTTAAATATAC 57.107 29.630 0.00 0.00 0.00 1.47
3169 3259 9.891828 CATCATAAACGCAAAGCCTTAAATATA 57.108 29.630 0.00 0.00 0.00 0.86
3170 3260 8.629158 TCATCATAAACGCAAAGCCTTAAATAT 58.371 29.630 0.00 0.00 0.00 1.28
3171 3261 7.913297 GTCATCATAAACGCAAAGCCTTAAATA 59.087 33.333 0.00 0.00 0.00 1.40
3172 3262 6.751888 GTCATCATAAACGCAAAGCCTTAAAT 59.248 34.615 0.00 0.00 0.00 1.40
3173 3263 6.090129 GTCATCATAAACGCAAAGCCTTAAA 58.910 36.000 0.00 0.00 0.00 1.52
3316 3416 2.998279 GCTGCAACAGACCCATGGC 61.998 63.158 6.09 0.00 32.44 4.40
3404 3504 2.507471 ACAATCAAGCCCCCAACAAAAA 59.493 40.909 0.00 0.00 0.00 1.94
3610 3716 5.814188 CGGTTTACATCCCTAAGTTAACCTC 59.186 44.000 0.88 0.00 42.30 3.85
3612 3718 4.877823 CCGGTTTACATCCCTAAGTTAACC 59.122 45.833 0.88 0.00 41.52 2.85
3731 3837 7.893124 AATTTCAGAGTTCCAATCATGCTAT 57.107 32.000 0.00 0.00 0.00 2.97
3732 3838 8.049117 AGTAATTTCAGAGTTCCAATCATGCTA 58.951 33.333 0.00 0.00 0.00 3.49
3733 3839 6.888632 AGTAATTTCAGAGTTCCAATCATGCT 59.111 34.615 0.00 0.00 0.00 3.79
3734 3840 6.971184 CAGTAATTTCAGAGTTCCAATCATGC 59.029 38.462 0.00 0.00 0.00 4.06
3735 3841 6.971184 GCAGTAATTTCAGAGTTCCAATCATG 59.029 38.462 0.00 0.00 0.00 3.07
3736 3842 6.096001 GGCAGTAATTTCAGAGTTCCAATCAT 59.904 38.462 0.00 0.00 0.00 2.45
3737 3843 5.415701 GGCAGTAATTTCAGAGTTCCAATCA 59.584 40.000 0.00 0.00 0.00 2.57
3738 3844 5.415701 TGGCAGTAATTTCAGAGTTCCAATC 59.584 40.000 0.00 0.00 0.00 2.67
3739 3845 5.324409 TGGCAGTAATTTCAGAGTTCCAAT 58.676 37.500 0.00 0.00 0.00 3.16
3740 3846 4.724399 TGGCAGTAATTTCAGAGTTCCAA 58.276 39.130 0.00 0.00 0.00 3.53
3741 3847 4.365514 TGGCAGTAATTTCAGAGTTCCA 57.634 40.909 0.00 0.00 0.00 3.53
3742 3848 5.705609 TTTGGCAGTAATTTCAGAGTTCC 57.294 39.130 0.00 0.00 0.00 3.62
3743 3849 9.294030 CATAATTTGGCAGTAATTTCAGAGTTC 57.706 33.333 2.73 0.00 0.00 3.01
3744 3850 9.023962 TCATAATTTGGCAGTAATTTCAGAGTT 57.976 29.630 2.73 0.00 0.00 3.01
3745 3851 8.579850 TCATAATTTGGCAGTAATTTCAGAGT 57.420 30.769 2.73 0.00 0.00 3.24
3746 3852 9.459640 CATCATAATTTGGCAGTAATTTCAGAG 57.540 33.333 2.73 0.00 0.00 3.35
3747 3853 9.187996 TCATCATAATTTGGCAGTAATTTCAGA 57.812 29.630 2.73 0.87 0.00 3.27
3748 3854 9.806203 TTCATCATAATTTGGCAGTAATTTCAG 57.194 29.630 2.73 0.00 0.00 3.02
3752 3858 9.590451 CAGTTTCATCATAATTTGGCAGTAATT 57.410 29.630 2.96 2.96 0.00 1.40
3753 3859 7.707893 GCAGTTTCATCATAATTTGGCAGTAAT 59.292 33.333 0.00 0.00 0.00 1.89
3754 3860 7.035004 GCAGTTTCATCATAATTTGGCAGTAA 58.965 34.615 0.00 0.00 0.00 2.24
3755 3861 6.405731 GGCAGTTTCATCATAATTTGGCAGTA 60.406 38.462 0.00 0.00 0.00 2.74
3756 3862 5.413499 GCAGTTTCATCATAATTTGGCAGT 58.587 37.500 0.00 0.00 0.00 4.40
3757 3863 4.807304 GGCAGTTTCATCATAATTTGGCAG 59.193 41.667 0.00 0.00 0.00 4.85
3758 3864 4.222366 TGGCAGTTTCATCATAATTTGGCA 59.778 37.500 0.00 0.00 37.50 4.92
3759 3865 4.757594 TGGCAGTTTCATCATAATTTGGC 58.242 39.130 0.00 0.00 0.00 4.52
3760 3866 7.852971 ATTTGGCAGTTTCATCATAATTTGG 57.147 32.000 0.00 0.00 0.00 3.28
3766 3872 9.752961 CAATCATAATTTGGCAGTTTCATCATA 57.247 29.630 0.00 0.00 0.00 2.15
3767 3873 7.713507 CCAATCATAATTTGGCAGTTTCATCAT 59.286 33.333 0.00 0.00 37.42 2.45
3768 3874 7.042950 CCAATCATAATTTGGCAGTTTCATCA 58.957 34.615 0.00 0.00 37.42 3.07
3769 3875 7.267128 TCCAATCATAATTTGGCAGTTTCATC 58.733 34.615 0.00 0.00 42.79 2.92
3770 3876 7.185318 TCCAATCATAATTTGGCAGTTTCAT 57.815 32.000 0.00 0.00 42.79 2.57
3771 3877 6.602410 TCCAATCATAATTTGGCAGTTTCA 57.398 33.333 0.00 0.00 42.79 2.69
3772 3878 7.099120 AGTTCCAATCATAATTTGGCAGTTTC 58.901 34.615 0.00 0.00 42.79 2.78
3773 3879 7.008021 AGTTCCAATCATAATTTGGCAGTTT 57.992 32.000 0.00 0.00 42.79 2.66
3774 3880 6.438425 AGAGTTCCAATCATAATTTGGCAGTT 59.562 34.615 0.00 0.00 42.79 3.16
3775 3881 5.954150 AGAGTTCCAATCATAATTTGGCAGT 59.046 36.000 0.00 0.00 42.79 4.40
3776 3882 6.095860 TCAGAGTTCCAATCATAATTTGGCAG 59.904 38.462 0.00 0.00 42.79 4.85
3777 3883 5.951148 TCAGAGTTCCAATCATAATTTGGCA 59.049 36.000 0.00 0.00 42.79 4.92
3778 3884 6.455360 TCAGAGTTCCAATCATAATTTGGC 57.545 37.500 0.00 0.00 42.79 4.52
3779 3885 9.880157 AATTTCAGAGTTCCAATCATAATTTGG 57.120 29.630 0.00 0.00 44.14 3.28
3784 3890 8.677300 GCAGTAATTTCAGAGTTCCAATCATAA 58.323 33.333 0.00 0.00 0.00 1.90
3785 3891 7.283127 GGCAGTAATTTCAGAGTTCCAATCATA 59.717 37.037 0.00 0.00 0.00 2.15
3786 3892 6.096001 GGCAGTAATTTCAGAGTTCCAATCAT 59.904 38.462 0.00 0.00 0.00 2.45
3787 3893 5.415701 GGCAGTAATTTCAGAGTTCCAATCA 59.584 40.000 0.00 0.00 0.00 2.57
3788 3894 5.415701 TGGCAGTAATTTCAGAGTTCCAATC 59.584 40.000 0.00 0.00 0.00 2.67
3789 3895 5.324409 TGGCAGTAATTTCAGAGTTCCAAT 58.676 37.500 0.00 0.00 0.00 3.16
3790 3896 4.724399 TGGCAGTAATTTCAGAGTTCCAA 58.276 39.130 0.00 0.00 0.00 3.53
3791 3897 4.365514 TGGCAGTAATTTCAGAGTTCCA 57.634 40.909 0.00 0.00 0.00 3.53
3792 3898 5.904362 ATTGGCAGTAATTTCAGAGTTCC 57.096 39.130 0.00 0.00 0.00 3.62
3805 3911 9.523168 ACTTTGGTAAGTTAAATATTGGCAGTA 57.477 29.630 0.00 0.00 41.85 2.74
3806 3912 8.417273 ACTTTGGTAAGTTAAATATTGGCAGT 57.583 30.769 0.00 0.00 41.85 4.40
3820 3926 2.687935 CACAGGCACAACTTTGGTAAGT 59.312 45.455 0.00 0.00 46.44 2.24
3821 3927 2.034558 CCACAGGCACAACTTTGGTAAG 59.965 50.000 0.00 0.00 34.38 2.34
3822 3928 2.028130 CCACAGGCACAACTTTGGTAA 58.972 47.619 0.00 0.00 34.38 2.85
3823 3929 1.686355 CCACAGGCACAACTTTGGTA 58.314 50.000 0.00 0.00 34.38 3.25
3824 3930 2.503775 CCACAGGCACAACTTTGGT 58.496 52.632 0.00 0.00 34.38 3.67
3836 3942 0.604780 CAGAGTTCCACAGCCACAGG 60.605 60.000 0.00 0.00 0.00 4.00
3837 3943 0.394192 TCAGAGTTCCACAGCCACAG 59.606 55.000 0.00 0.00 0.00 3.66
3838 3944 0.836606 TTCAGAGTTCCACAGCCACA 59.163 50.000 0.00 0.00 0.00 4.17
3839 3945 1.967319 TTTCAGAGTTCCACAGCCAC 58.033 50.000 0.00 0.00 0.00 5.01
3840 3946 2.957402 ATTTCAGAGTTCCACAGCCA 57.043 45.000 0.00 0.00 0.00 4.75
3841 3947 4.154918 CAGTAATTTCAGAGTTCCACAGCC 59.845 45.833 0.00 0.00 0.00 4.85
3842 3948 4.378874 GCAGTAATTTCAGAGTTCCACAGC 60.379 45.833 0.00 0.00 0.00 4.40
3843 3949 4.154918 GGCAGTAATTTCAGAGTTCCACAG 59.845 45.833 0.00 0.00 0.00 3.66
3844 3950 4.072131 GGCAGTAATTTCAGAGTTCCACA 58.928 43.478 0.00 0.00 0.00 4.17
3845 3951 4.072131 TGGCAGTAATTTCAGAGTTCCAC 58.928 43.478 0.00 0.00 0.00 4.02
3846 3952 4.365514 TGGCAGTAATTTCAGAGTTCCA 57.634 40.909 0.00 0.00 0.00 3.53
3847 3953 5.705609 TTTGGCAGTAATTTCAGAGTTCC 57.294 39.130 0.00 0.00 0.00 3.62
3848 3954 9.294030 CATAATTTGGCAGTAATTTCAGAGTTC 57.706 33.333 2.73 0.00 0.00 3.01
3849 3955 9.023962 TCATAATTTGGCAGTAATTTCAGAGTT 57.976 29.630 2.73 0.00 0.00 3.01
3850 3956 8.579850 TCATAATTTGGCAGTAATTTCAGAGT 57.420 30.769 2.73 0.00 0.00 3.24
3851 3957 9.459640 CATCATAATTTGGCAGTAATTTCAGAG 57.540 33.333 2.73 0.00 0.00 3.35
3852 3958 9.187996 TCATCATAATTTGGCAGTAATTTCAGA 57.812 29.630 2.73 0.87 0.00 3.27
3853 3959 9.241317 GTCATCATAATTTGGCAGTAATTTCAG 57.759 33.333 2.73 0.00 0.00 3.02
3854 3960 7.914871 CGTCATCATAATTTGGCAGTAATTTCA 59.085 33.333 2.73 0.00 0.00 2.69
3855 3961 8.128582 TCGTCATCATAATTTGGCAGTAATTTC 58.871 33.333 2.73 0.00 0.00 2.17
3856 3962 7.995289 TCGTCATCATAATTTGGCAGTAATTT 58.005 30.769 2.73 0.00 0.00 1.82
3857 3963 7.566760 TCGTCATCATAATTTGGCAGTAATT 57.433 32.000 2.96 2.96 0.00 1.40
3858 3964 7.255242 CCTTCGTCATCATAATTTGGCAGTAAT 60.255 37.037 0.00 0.00 0.00 1.89
3859 3965 6.038161 CCTTCGTCATCATAATTTGGCAGTAA 59.962 38.462 0.00 0.00 0.00 2.24
3860 3966 5.527214 CCTTCGTCATCATAATTTGGCAGTA 59.473 40.000 0.00 0.00 0.00 2.74
3861 3967 4.336433 CCTTCGTCATCATAATTTGGCAGT 59.664 41.667 0.00 0.00 0.00 4.40
3862 3968 4.576053 TCCTTCGTCATCATAATTTGGCAG 59.424 41.667 0.00 0.00 0.00 4.85
3863 3969 4.335315 GTCCTTCGTCATCATAATTTGGCA 59.665 41.667 0.00 0.00 0.00 4.92
3864 3970 4.335315 TGTCCTTCGTCATCATAATTTGGC 59.665 41.667 0.00 0.00 0.00 4.52
3865 3971 5.586243 AGTGTCCTTCGTCATCATAATTTGG 59.414 40.000 0.00 0.00 0.00 3.28
3866 3972 6.313658 TCAGTGTCCTTCGTCATCATAATTTG 59.686 38.462 0.00 0.00 0.00 2.32
3867 3973 6.406370 TCAGTGTCCTTCGTCATCATAATTT 58.594 36.000 0.00 0.00 0.00 1.82
3868 3974 5.977635 TCAGTGTCCTTCGTCATCATAATT 58.022 37.500 0.00 0.00 0.00 1.40
3869 3975 5.127845 ACTCAGTGTCCTTCGTCATCATAAT 59.872 40.000 0.00 0.00 0.00 1.28
3870 3976 4.462834 ACTCAGTGTCCTTCGTCATCATAA 59.537 41.667 0.00 0.00 0.00 1.90
3871 3977 4.017126 ACTCAGTGTCCTTCGTCATCATA 58.983 43.478 0.00 0.00 0.00 2.15
3872 3978 2.828520 ACTCAGTGTCCTTCGTCATCAT 59.171 45.455 0.00 0.00 0.00 2.45
3873 3979 2.239400 ACTCAGTGTCCTTCGTCATCA 58.761 47.619 0.00 0.00 0.00 3.07
3874 3980 2.989840 CAACTCAGTGTCCTTCGTCATC 59.010 50.000 0.00 0.00 0.00 2.92
3875 3981 2.289072 CCAACTCAGTGTCCTTCGTCAT 60.289 50.000 0.00 0.00 0.00 3.06
3876 3982 1.068588 CCAACTCAGTGTCCTTCGTCA 59.931 52.381 0.00 0.00 0.00 4.35
3877 3983 1.068741 ACCAACTCAGTGTCCTTCGTC 59.931 52.381 0.00 0.00 0.00 4.20
3878 3984 1.068741 GACCAACTCAGTGTCCTTCGT 59.931 52.381 0.00 0.00 0.00 3.85
3879 3985 1.068588 TGACCAACTCAGTGTCCTTCG 59.931 52.381 0.00 0.00 0.00 3.79
3880 3986 2.484889 GTGACCAACTCAGTGTCCTTC 58.515 52.381 0.00 0.00 0.00 3.46
3881 3987 1.141053 GGTGACCAACTCAGTGTCCTT 59.859 52.381 0.00 0.00 0.00 3.36
3882 3988 0.759346 GGTGACCAACTCAGTGTCCT 59.241 55.000 0.00 0.00 0.00 3.85
3883 3989 0.468226 TGGTGACCAACTCAGTGTCC 59.532 55.000 0.00 0.00 0.00 4.02
3884 3990 1.134521 TGTGGTGACCAACTCAGTGTC 60.135 52.381 5.57 0.00 34.18 3.67
3885 3991 0.908910 TGTGGTGACCAACTCAGTGT 59.091 50.000 5.57 0.00 34.18 3.55
3886 3992 2.260844 ATGTGGTGACCAACTCAGTG 57.739 50.000 5.57 0.00 34.18 3.66
3887 3993 3.582647 TGATATGTGGTGACCAACTCAGT 59.417 43.478 5.57 0.00 34.18 3.41
3888 3994 4.206477 TGATATGTGGTGACCAACTCAG 57.794 45.455 5.57 0.00 34.18 3.35
3889 3995 4.041567 ACTTGATATGTGGTGACCAACTCA 59.958 41.667 5.57 0.00 34.18 3.41
3890 3996 4.579869 ACTTGATATGTGGTGACCAACTC 58.420 43.478 5.57 1.35 34.18 3.01
3891 3997 4.640771 ACTTGATATGTGGTGACCAACT 57.359 40.909 5.57 0.00 34.18 3.16
3892 3998 8.500753 TTATAACTTGATATGTGGTGACCAAC 57.499 34.615 5.57 1.12 34.18 3.77
3893 3999 9.693739 AATTATAACTTGATATGTGGTGACCAA 57.306 29.630 5.57 0.00 34.18 3.67
3894 4000 9.693739 AAATTATAACTTGATATGTGGTGACCA 57.306 29.630 0.00 0.00 0.00 4.02
3895 4001 9.950680 CAAATTATAACTTGATATGTGGTGACC 57.049 33.333 0.27 0.00 0.00 4.02
3896 4002 9.450807 GCAAATTATAACTTGATATGTGGTGAC 57.549 33.333 10.71 0.00 0.00 3.67
3897 4003 8.341903 CGCAAATTATAACTTGATATGTGGTGA 58.658 33.333 10.71 0.00 0.00 4.02
3898 4004 8.341903 TCGCAAATTATAACTTGATATGTGGTG 58.658 33.333 10.71 0.00 0.00 4.17
3899 4005 8.445275 TCGCAAATTATAACTTGATATGTGGT 57.555 30.769 10.71 0.00 0.00 4.16
3900 4006 9.169468 GTTCGCAAATTATAACTTGATATGTGG 57.831 33.333 10.71 0.00 0.00 4.17
3901 4007 9.935682 AGTTCGCAAATTATAACTTGATATGTG 57.064 29.630 10.71 0.00 0.00 3.21
3903 4009 9.599322 GGAGTTCGCAAATTATAACTTGATATG 57.401 33.333 10.71 0.00 32.51 1.78
3904 4010 9.561069 AGGAGTTCGCAAATTATAACTTGATAT 57.439 29.630 10.71 0.00 32.51 1.63
3905 4011 8.958119 AGGAGTTCGCAAATTATAACTTGATA 57.042 30.769 10.71 0.00 32.51 2.15
3906 4012 7.865706 AGGAGTTCGCAAATTATAACTTGAT 57.134 32.000 10.71 0.00 32.51 2.57
3907 4013 8.780846 TTAGGAGTTCGCAAATTATAACTTGA 57.219 30.769 10.71 0.00 32.51 3.02
3913 4019 9.268268 CCACTAATTAGGAGTTCGCAAATTATA 57.732 33.333 16.73 0.00 0.00 0.98
3914 4020 7.228706 CCCACTAATTAGGAGTTCGCAAATTAT 59.771 37.037 16.73 0.00 0.00 1.28
3915 4021 6.540914 CCCACTAATTAGGAGTTCGCAAATTA 59.459 38.462 16.73 0.00 0.00 1.40
3916 4022 5.357032 CCCACTAATTAGGAGTTCGCAAATT 59.643 40.000 16.73 0.00 0.00 1.82
3917 4023 4.881850 CCCACTAATTAGGAGTTCGCAAAT 59.118 41.667 16.73 0.00 0.00 2.32
3918 4024 4.020039 TCCCACTAATTAGGAGTTCGCAAA 60.020 41.667 16.73 0.00 0.00 3.68
3919 4025 3.516300 TCCCACTAATTAGGAGTTCGCAA 59.484 43.478 16.73 0.00 0.00 4.85
3920 4026 3.101437 TCCCACTAATTAGGAGTTCGCA 58.899 45.455 16.73 0.00 0.00 5.10
3921 4027 3.814005 TCCCACTAATTAGGAGTTCGC 57.186 47.619 16.73 0.00 0.00 4.70
3922 4028 5.731591 AGTTTCCCACTAATTAGGAGTTCG 58.268 41.667 16.73 0.00 31.97 3.95
3923 4029 9.110502 CATAAGTTTCCCACTAATTAGGAGTTC 57.889 37.037 16.73 1.85 32.94 3.01
3924 4030 8.832735 TCATAAGTTTCCCACTAATTAGGAGTT 58.167 33.333 16.73 6.89 32.94 3.01
3925 4031 8.388656 TCATAAGTTTCCCACTAATTAGGAGT 57.611 34.615 16.73 0.00 32.94 3.85
3926 4032 9.277783 CATCATAAGTTTCCCACTAATTAGGAG 57.722 37.037 16.73 8.54 32.94 3.69
3927 4033 7.719633 GCATCATAAGTTTCCCACTAATTAGGA 59.280 37.037 16.73 2.75 32.94 2.94
3928 4034 7.502226 TGCATCATAAGTTTCCCACTAATTAGG 59.498 37.037 16.73 5.82 32.94 2.69
3929 4035 8.450578 TGCATCATAAGTTTCCCACTAATTAG 57.549 34.615 11.05 11.05 32.94 1.73
3930 4036 8.849168 CATGCATCATAAGTTTCCCACTAATTA 58.151 33.333 0.00 0.00 32.94 1.40
3931 4037 7.560991 TCATGCATCATAAGTTTCCCACTAATT 59.439 33.333 0.00 0.00 32.94 1.40
3932 4038 7.062322 TCATGCATCATAAGTTTCCCACTAAT 58.938 34.615 0.00 0.00 32.94 1.73
3933 4039 6.422333 TCATGCATCATAAGTTTCCCACTAA 58.578 36.000 0.00 0.00 32.94 2.24
3934 4040 6.000246 TCATGCATCATAAGTTTCCCACTA 58.000 37.500 0.00 0.00 32.94 2.74
3935 4041 4.858850 TCATGCATCATAAGTTTCCCACT 58.141 39.130 0.00 0.00 37.30 4.00
3936 4042 5.126061 ACTTCATGCATCATAAGTTTCCCAC 59.874 40.000 11.15 0.00 0.00 4.61
3937 4043 5.263599 ACTTCATGCATCATAAGTTTCCCA 58.736 37.500 11.15 0.00 0.00 4.37
3938 4044 5.591877 AGACTTCATGCATCATAAGTTTCCC 59.408 40.000 15.93 7.03 32.51 3.97
3939 4045 6.541641 AGAGACTTCATGCATCATAAGTTTCC 59.458 38.462 21.27 13.51 35.02 3.13
3940 4046 7.279536 TGAGAGACTTCATGCATCATAAGTTTC 59.720 37.037 19.21 19.21 34.80 2.78
3941 4047 7.065563 GTGAGAGACTTCATGCATCATAAGTTT 59.934 37.037 15.93 12.10 32.51 2.66
3942 4048 6.538021 GTGAGAGACTTCATGCATCATAAGTT 59.462 38.462 15.93 8.96 32.51 2.66
3943 4049 6.047870 GTGAGAGACTTCATGCATCATAAGT 58.952 40.000 15.14 15.14 34.96 2.24
3944 4050 6.047231 TGTGAGAGACTTCATGCATCATAAG 58.953 40.000 0.00 3.79 0.00 1.73
3945 4051 5.981174 TGTGAGAGACTTCATGCATCATAA 58.019 37.500 0.00 0.00 0.00 1.90
3946 4052 5.603170 TGTGAGAGACTTCATGCATCATA 57.397 39.130 0.00 0.00 0.00 2.15
3947 4053 4.482952 TGTGAGAGACTTCATGCATCAT 57.517 40.909 0.00 0.00 0.00 2.45
3948 4054 3.967332 TGTGAGAGACTTCATGCATCA 57.033 42.857 0.00 0.00 0.00 3.07
3949 4055 4.270566 GTCATGTGAGAGACTTCATGCATC 59.729 45.833 0.00 0.00 37.95 3.91
3950 4056 4.190001 GTCATGTGAGAGACTTCATGCAT 58.810 43.478 0.00 0.00 37.95 3.96
3951 4057 3.593096 GTCATGTGAGAGACTTCATGCA 58.407 45.455 0.00 0.00 37.95 3.96
3952 4058 2.935201 GGTCATGTGAGAGACTTCATGC 59.065 50.000 0.00 0.00 37.95 4.06
3953 4059 4.468765 AGGTCATGTGAGAGACTTCATG 57.531 45.455 0.00 0.00 38.96 3.07
3954 4060 5.105146 GGTAAGGTCATGTGAGAGACTTCAT 60.105 44.000 0.00 0.00 35.18 2.57
3955 4061 4.220821 GGTAAGGTCATGTGAGAGACTTCA 59.779 45.833 0.00 0.00 35.18 3.02
3956 4062 4.464597 AGGTAAGGTCATGTGAGAGACTTC 59.535 45.833 0.00 0.00 35.18 3.01
3957 4063 4.421131 AGGTAAGGTCATGTGAGAGACTT 58.579 43.478 0.00 0.00 35.18 3.01
3958 4064 4.054359 AGGTAAGGTCATGTGAGAGACT 57.946 45.455 0.00 0.00 35.18 3.24
3959 4065 4.810191 AAGGTAAGGTCATGTGAGAGAC 57.190 45.455 0.00 0.00 0.00 3.36
3960 4066 5.551233 CAAAAGGTAAGGTCATGTGAGAGA 58.449 41.667 0.00 0.00 0.00 3.10
3961 4067 4.154918 GCAAAAGGTAAGGTCATGTGAGAG 59.845 45.833 0.00 0.00 0.00 3.20
3962 4068 4.072131 GCAAAAGGTAAGGTCATGTGAGA 58.928 43.478 0.00 0.00 0.00 3.27
3963 4069 4.074970 AGCAAAAGGTAAGGTCATGTGAG 58.925 43.478 0.00 0.00 0.00 3.51
3964 4070 3.820467 CAGCAAAAGGTAAGGTCATGTGA 59.180 43.478 0.00 0.00 0.00 3.58
3965 4071 3.612479 GCAGCAAAAGGTAAGGTCATGTG 60.612 47.826 0.00 0.00 0.00 3.21
3966 4072 2.558359 GCAGCAAAAGGTAAGGTCATGT 59.442 45.455 0.00 0.00 0.00 3.21
3967 4073 2.821969 AGCAGCAAAAGGTAAGGTCATG 59.178 45.455 0.00 0.00 0.00 3.07
3968 4074 2.821969 CAGCAGCAAAAGGTAAGGTCAT 59.178 45.455 0.00 0.00 0.00 3.06
3969 4075 2.229792 CAGCAGCAAAAGGTAAGGTCA 58.770 47.619 0.00 0.00 0.00 4.02
3970 4076 1.541588 CCAGCAGCAAAAGGTAAGGTC 59.458 52.381 0.00 0.00 0.00 3.85
3971 4077 1.620822 CCAGCAGCAAAAGGTAAGGT 58.379 50.000 0.00 0.00 0.00 3.50
3972 4078 0.890683 CCCAGCAGCAAAAGGTAAGG 59.109 55.000 0.00 0.00 0.00 2.69
3973 4079 0.890683 CCCCAGCAGCAAAAGGTAAG 59.109 55.000 0.00 0.00 0.00 2.34
3974 4080 0.480690 TCCCCAGCAGCAAAAGGTAA 59.519 50.000 0.00 0.00 0.00 2.85
3975 4081 0.704076 ATCCCCAGCAGCAAAAGGTA 59.296 50.000 0.00 0.00 0.00 3.08
3976 4082 0.704076 TATCCCCAGCAGCAAAAGGT 59.296 50.000 0.00 0.00 0.00 3.50
3977 4083 2.077687 ATATCCCCAGCAGCAAAAGG 57.922 50.000 0.00 0.00 0.00 3.11
3978 4084 2.555757 GCTATATCCCCAGCAGCAAAAG 59.444 50.000 0.00 0.00 37.73 2.27
3979 4085 2.091939 TGCTATATCCCCAGCAGCAAAA 60.092 45.455 0.00 0.00 42.68 2.44
3980 4086 1.494296 TGCTATATCCCCAGCAGCAAA 59.506 47.619 0.00 0.00 42.68 3.68
3981 4087 1.139439 TGCTATATCCCCAGCAGCAA 58.861 50.000 0.00 0.00 42.68 3.91
3982 4088 2.852839 TGCTATATCCCCAGCAGCA 58.147 52.632 0.00 0.00 42.68 4.41
3986 4092 8.971073 ACAATAATTAAATGCTATATCCCCAGC 58.029 33.333 0.00 0.00 38.31 4.85
3997 4103 9.143631 GAACAAAGCAGACAATAATTAAATGCT 57.856 29.630 7.17 7.17 43.92 3.79
3998 4104 9.143631 AGAACAAAGCAGACAATAATTAAATGC 57.856 29.630 0.00 0.00 0.00 3.56
4002 4108 9.462174 CAACAGAACAAAGCAGACAATAATTAA 57.538 29.630 0.00 0.00 0.00 1.40
4003 4109 7.594758 GCAACAGAACAAAGCAGACAATAATTA 59.405 33.333 0.00 0.00 0.00 1.40
4004 4110 6.421801 GCAACAGAACAAAGCAGACAATAATT 59.578 34.615 0.00 0.00 0.00 1.40
4005 4111 5.922544 GCAACAGAACAAAGCAGACAATAAT 59.077 36.000 0.00 0.00 0.00 1.28
4006 4112 5.163571 TGCAACAGAACAAAGCAGACAATAA 60.164 36.000 0.00 0.00 0.00 1.40
4007 4113 4.337836 TGCAACAGAACAAAGCAGACAATA 59.662 37.500 0.00 0.00 0.00 1.90
4008 4114 3.130869 TGCAACAGAACAAAGCAGACAAT 59.869 39.130 0.00 0.00 0.00 2.71
4009 4115 2.491298 TGCAACAGAACAAAGCAGACAA 59.509 40.909 0.00 0.00 0.00 3.18
4010 4116 2.090760 TGCAACAGAACAAAGCAGACA 58.909 42.857 0.00 0.00 0.00 3.41
4011 4117 2.849880 TGCAACAGAACAAAGCAGAC 57.150 45.000 0.00 0.00 0.00 3.51
4014 4120 1.473258 ACCTGCAACAGAACAAAGCA 58.527 45.000 0.00 0.00 32.44 3.91
4015 4121 3.550842 CCTTACCTGCAACAGAACAAAGC 60.551 47.826 0.00 0.00 32.44 3.51
4016 4122 3.882888 TCCTTACCTGCAACAGAACAAAG 59.117 43.478 0.00 0.00 32.44 2.77
4017 4123 3.882888 CTCCTTACCTGCAACAGAACAAA 59.117 43.478 0.00 0.00 32.44 2.83
4018 4124 3.135712 TCTCCTTACCTGCAACAGAACAA 59.864 43.478 0.00 0.00 32.44 2.83
4019 4125 2.703536 TCTCCTTACCTGCAACAGAACA 59.296 45.455 0.00 0.00 32.44 3.18
4020 4126 3.330267 CTCTCCTTACCTGCAACAGAAC 58.670 50.000 0.00 0.00 32.44 3.01
4021 4127 2.303022 CCTCTCCTTACCTGCAACAGAA 59.697 50.000 0.00 0.00 32.44 3.02
4022 4128 1.902508 CCTCTCCTTACCTGCAACAGA 59.097 52.381 0.00 0.00 32.44 3.41
4023 4129 1.625818 ACCTCTCCTTACCTGCAACAG 59.374 52.381 0.00 0.00 0.00 3.16
4024 4130 1.347707 CACCTCTCCTTACCTGCAACA 59.652 52.381 0.00 0.00 0.00 3.33
4025 4131 1.946283 GCACCTCTCCTTACCTGCAAC 60.946 57.143 0.00 0.00 0.00 4.17
4026 4132 0.324943 GCACCTCTCCTTACCTGCAA 59.675 55.000 0.00 0.00 0.00 4.08
4027 4133 0.545309 AGCACCTCTCCTTACCTGCA 60.545 55.000 0.00 0.00 0.00 4.41
4028 4134 0.107945 CAGCACCTCTCCTTACCTGC 60.108 60.000 0.00 0.00 0.00 4.85
4029 4135 1.205893 GTCAGCACCTCTCCTTACCTG 59.794 57.143 0.00 0.00 0.00 4.00
4030 4136 1.203187 TGTCAGCACCTCTCCTTACCT 60.203 52.381 0.00 0.00 0.00 3.08
4031 4137 1.205893 CTGTCAGCACCTCTCCTTACC 59.794 57.143 0.00 0.00 0.00 2.85
4032 4138 2.165437 CTCTGTCAGCACCTCTCCTTAC 59.835 54.545 0.00 0.00 0.00 2.34
4033 4139 2.451490 CTCTGTCAGCACCTCTCCTTA 58.549 52.381 0.00 0.00 0.00 2.69
4034 4140 1.265236 CTCTGTCAGCACCTCTCCTT 58.735 55.000 0.00 0.00 0.00 3.36
4035 4141 2.974623 CTCTGTCAGCACCTCTCCT 58.025 57.895 0.00 0.00 0.00 3.69
4045 4151 7.252708 CAAGCTATATATCTCTGCTCTGTCAG 58.747 42.308 0.00 0.00 33.10 3.51
4046 4152 6.152492 CCAAGCTATATATCTCTGCTCTGTCA 59.848 42.308 0.00 0.00 33.10 3.58
4047 4153 6.563422 CCAAGCTATATATCTCTGCTCTGTC 58.437 44.000 0.00 0.00 33.10 3.51
4048 4154 5.105392 GCCAAGCTATATATCTCTGCTCTGT 60.105 44.000 0.00 0.00 33.10 3.41
4049 4155 5.127519 AGCCAAGCTATATATCTCTGCTCTG 59.872 44.000 0.00 2.35 36.99 3.35
4050 4156 5.271598 AGCCAAGCTATATATCTCTGCTCT 58.728 41.667 0.00 0.00 36.99 4.09
4051 4157 5.596836 AGCCAAGCTATATATCTCTGCTC 57.403 43.478 0.00 0.00 36.99 4.26
4052 4158 6.213195 AGAAAGCCAAGCTATATATCTCTGCT 59.787 38.462 0.00 4.74 38.25 4.24
4053 4159 6.405538 AGAAAGCCAAGCTATATATCTCTGC 58.594 40.000 0.00 1.15 38.25 4.26
4054 4160 7.609960 TGAGAAAGCCAAGCTATATATCTCTG 58.390 38.462 13.24 0.00 38.25 3.35
4055 4161 7.789202 TGAGAAAGCCAAGCTATATATCTCT 57.211 36.000 13.24 1.00 38.25 3.10
4056 4162 8.839310 TTTGAGAAAGCCAAGCTATATATCTC 57.161 34.615 0.00 0.00 38.25 2.75
4064 4170 9.019656 TGTAAATTATTTGAGAAAGCCAAGCTA 57.980 29.630 0.00 0.00 38.25 3.32
4065 4171 7.895759 TGTAAATTATTTGAGAAAGCCAAGCT 58.104 30.769 0.00 0.00 42.56 3.74
4066 4172 7.814587 ACTGTAAATTATTTGAGAAAGCCAAGC 59.185 33.333 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.