Multiple sequence alignment - TraesCS3D01G444800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G444800 chr3D 100.000 2585 0 0 1 2585 553937762 553935178 0.000000e+00 4774
1 TraesCS3D01G444800 chr4D 95.505 2180 86 6 410 2585 502108821 502106650 0.000000e+00 3472
2 TraesCS3D01G444800 chr1D 94.874 2185 95 9 408 2585 430108486 430110660 0.000000e+00 3398
3 TraesCS3D01G444800 chr5A 94.833 2187 96 8 407 2585 619775393 619773216 0.000000e+00 3397
4 TraesCS3D01G444800 chr6D 94.579 2195 95 14 409 2585 449138063 449135875 0.000000e+00 3373
5 TraesCS3D01G444800 chr7A 94.684 2182 99 9 409 2585 661594029 661591860 0.000000e+00 3371
6 TraesCS3D01G444800 chr2A 94.378 2188 103 11 408 2585 704738836 704736659 0.000000e+00 3341
7 TraesCS3D01G444800 chr2D 94.290 2189 100 12 408 2585 498273317 498275491 0.000000e+00 3326
8 TraesCS3D01G444800 chr3B 93.776 2185 116 12 407 2585 168094224 168096394 0.000000e+00 3264
9 TraesCS3D01G444800 chr3B 91.710 193 16 0 1 193 735389053 735388861 4.240000e-68 268
10 TraesCS3D01G444800 chr3B 85.417 192 18 7 12 193 735259283 735259092 9.440000e-45 191
11 TraesCS3D01G444800 chr7D 93.419 2188 119 18 410 2585 85019321 85021495 0.000000e+00 3219
12 TraesCS3D01G444800 chr3A 96.413 223 5 1 191 410 690469993 690469771 5.260000e-97 364
13 TraesCS3D01G444800 chr3A 87.047 193 6 3 1 193 690470199 690470026 1.570000e-47 200
14 TraesCS3D01G444800 chr3A 86.170 94 9 3 191 283 690438829 690438739 5.890000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G444800 chr3D 553935178 553937762 2584 True 4774 4774 100.000 1 2585 1 chr3D.!!$R1 2584
1 TraesCS3D01G444800 chr4D 502106650 502108821 2171 True 3472 3472 95.505 410 2585 1 chr4D.!!$R1 2175
2 TraesCS3D01G444800 chr1D 430108486 430110660 2174 False 3398 3398 94.874 408 2585 1 chr1D.!!$F1 2177
3 TraesCS3D01G444800 chr5A 619773216 619775393 2177 True 3397 3397 94.833 407 2585 1 chr5A.!!$R1 2178
4 TraesCS3D01G444800 chr6D 449135875 449138063 2188 True 3373 3373 94.579 409 2585 1 chr6D.!!$R1 2176
5 TraesCS3D01G444800 chr7A 661591860 661594029 2169 True 3371 3371 94.684 409 2585 1 chr7A.!!$R1 2176
6 TraesCS3D01G444800 chr2A 704736659 704738836 2177 True 3341 3341 94.378 408 2585 1 chr2A.!!$R1 2177
7 TraesCS3D01G444800 chr2D 498273317 498275491 2174 False 3326 3326 94.290 408 2585 1 chr2D.!!$F1 2177
8 TraesCS3D01G444800 chr3B 168094224 168096394 2170 False 3264 3264 93.776 407 2585 1 chr3B.!!$F1 2178
9 TraesCS3D01G444800 chr7D 85019321 85021495 2174 False 3219 3219 93.419 410 2585 1 chr7D.!!$F1 2175

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 388 0.038526 CCACGCGTACTCTTCAAGGT 60.039 55.0 13.44 0.0 0.0 3.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1658 0.107945 CCTAGGAACTCTGGCAGTGC 60.108 60.0 15.27 6.55 41.75 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.526536 GCAATGCGCGCACTTTCG 61.527 61.111 39.05 22.77 0.00 3.46
34 35 2.871080 CAATGCGCGCACTTTCGG 60.871 61.111 39.05 17.85 0.00 4.30
35 36 3.047280 AATGCGCGCACTTTCGGA 61.047 55.556 39.05 11.72 0.00 4.55
36 37 2.398554 AATGCGCGCACTTTCGGAT 61.399 52.632 39.05 15.90 38.36 4.18
37 38 1.922135 AATGCGCGCACTTTCGGATT 61.922 50.000 39.05 21.47 40.85 3.01
38 39 1.922135 ATGCGCGCACTTTCGGATTT 61.922 50.000 39.05 14.13 33.01 2.17
39 40 1.292571 TGCGCGCACTTTCGGATTTA 61.293 50.000 33.09 1.22 0.00 1.40
40 41 0.586502 GCGCGCACTTTCGGATTTAG 60.587 55.000 29.10 0.00 0.00 1.85
41 42 0.719465 CGCGCACTTTCGGATTTAGT 59.281 50.000 8.75 0.00 0.00 2.24
42 43 1.921887 CGCGCACTTTCGGATTTAGTA 59.078 47.619 8.75 0.00 0.00 1.82
43 44 2.538449 CGCGCACTTTCGGATTTAGTAT 59.462 45.455 8.75 0.00 0.00 2.12
44 45 3.361724 CGCGCACTTTCGGATTTAGTATC 60.362 47.826 8.75 0.00 0.00 2.24
45 46 3.554324 GCGCACTTTCGGATTTAGTATCA 59.446 43.478 0.30 0.00 0.00 2.15
46 47 4.033587 GCGCACTTTCGGATTTAGTATCAA 59.966 41.667 0.30 0.00 0.00 2.57
47 48 5.277345 GCGCACTTTCGGATTTAGTATCAAT 60.277 40.000 0.30 0.00 0.00 2.57
48 49 6.073980 GCGCACTTTCGGATTTAGTATCAATA 60.074 38.462 0.30 0.00 0.00 1.90
49 50 7.517734 GCGCACTTTCGGATTTAGTATCAATAA 60.518 37.037 0.30 0.00 0.00 1.40
50 51 8.332464 CGCACTTTCGGATTTAGTATCAATAAA 58.668 33.333 0.00 0.00 0.00 1.40
51 52 9.997482 GCACTTTCGGATTTAGTATCAATAAAA 57.003 29.630 0.00 0.00 0.00 1.52
58 59 9.525007 CGGATTTAGTATCAATAAAACGTATGC 57.475 33.333 0.00 0.00 0.00 3.14
63 64 7.843490 AGTATCAATAAAACGTATGCAGTGT 57.157 32.000 0.00 0.00 0.00 3.55
64 65 7.906160 AGTATCAATAAAACGTATGCAGTGTC 58.094 34.615 0.00 0.00 0.00 3.67
65 66 6.985188 ATCAATAAAACGTATGCAGTGTCT 57.015 33.333 0.00 0.00 0.00 3.41
66 67 6.795098 TCAATAAAACGTATGCAGTGTCTT 57.205 33.333 0.00 0.00 0.00 3.01
67 68 7.197071 TCAATAAAACGTATGCAGTGTCTTT 57.803 32.000 0.00 0.00 0.00 2.52
68 69 7.075121 TCAATAAAACGTATGCAGTGTCTTTG 58.925 34.615 0.00 0.00 0.00 2.77
69 70 6.795098 ATAAAACGTATGCAGTGTCTTTGA 57.205 33.333 0.00 0.00 0.00 2.69
70 71 5.689383 AAAACGTATGCAGTGTCTTTGAT 57.311 34.783 0.00 0.00 0.00 2.57
71 72 5.689383 AAACGTATGCAGTGTCTTTGATT 57.311 34.783 0.00 0.00 0.00 2.57
72 73 6.795098 AAACGTATGCAGTGTCTTTGATTA 57.205 33.333 0.00 0.00 0.00 1.75
73 74 5.779806 ACGTATGCAGTGTCTTTGATTAC 57.220 39.130 0.00 0.00 0.00 1.89
74 75 5.234752 ACGTATGCAGTGTCTTTGATTACA 58.765 37.500 0.00 0.00 0.00 2.41
75 76 5.348724 ACGTATGCAGTGTCTTTGATTACAG 59.651 40.000 0.00 0.00 0.00 2.74
76 77 5.220472 CGTATGCAGTGTCTTTGATTACAGG 60.220 44.000 0.00 0.00 0.00 4.00
77 78 2.813754 TGCAGTGTCTTTGATTACAGGC 59.186 45.455 0.00 0.00 0.00 4.85
78 79 3.077359 GCAGTGTCTTTGATTACAGGCT 58.923 45.455 0.00 0.00 0.00 4.58
79 80 3.503748 GCAGTGTCTTTGATTACAGGCTT 59.496 43.478 0.00 0.00 0.00 4.35
80 81 4.614535 GCAGTGTCTTTGATTACAGGCTTG 60.615 45.833 0.00 0.00 0.00 4.01
81 82 4.516698 CAGTGTCTTTGATTACAGGCTTGT 59.483 41.667 6.72 6.72 41.39 3.16
82 83 4.757149 AGTGTCTTTGATTACAGGCTTGTC 59.243 41.667 4.04 0.00 38.76 3.18
83 84 4.757149 GTGTCTTTGATTACAGGCTTGTCT 59.243 41.667 4.04 0.00 38.76 3.41
84 85 5.239525 GTGTCTTTGATTACAGGCTTGTCTT 59.760 40.000 4.04 0.00 38.76 3.01
85 86 5.827797 TGTCTTTGATTACAGGCTTGTCTTT 59.172 36.000 4.04 0.00 38.76 2.52
86 87 6.017109 TGTCTTTGATTACAGGCTTGTCTTTC 60.017 38.462 4.04 1.79 38.76 2.62
87 88 6.017109 GTCTTTGATTACAGGCTTGTCTTTCA 60.017 38.462 4.04 4.56 38.76 2.69
88 89 6.716628 TCTTTGATTACAGGCTTGTCTTTCAT 59.283 34.615 4.04 0.00 38.76 2.57
89 90 6.899393 TTGATTACAGGCTTGTCTTTCATT 57.101 33.333 4.04 0.00 38.76 2.57
90 91 7.994425 TTGATTACAGGCTTGTCTTTCATTA 57.006 32.000 4.04 0.00 38.76 1.90
91 92 7.994425 TGATTACAGGCTTGTCTTTCATTAA 57.006 32.000 4.04 0.00 38.76 1.40
92 93 8.579850 TGATTACAGGCTTGTCTTTCATTAAT 57.420 30.769 4.04 0.00 38.76 1.40
93 94 8.461222 TGATTACAGGCTTGTCTTTCATTAATG 58.539 33.333 4.04 9.29 38.76 1.90
94 95 5.064441 ACAGGCTTGTCTTTCATTAATGC 57.936 39.130 10.76 0.00 29.46 3.56
95 96 4.768968 ACAGGCTTGTCTTTCATTAATGCT 59.231 37.500 10.76 0.00 29.46 3.79
96 97 5.244626 ACAGGCTTGTCTTTCATTAATGCTT 59.755 36.000 10.76 0.00 29.46 3.91
97 98 5.575606 CAGGCTTGTCTTTCATTAATGCTTG 59.424 40.000 10.76 3.27 0.00 4.01
98 99 5.477984 AGGCTTGTCTTTCATTAATGCTTGA 59.522 36.000 10.76 5.47 0.00 3.02
99 100 6.154021 AGGCTTGTCTTTCATTAATGCTTGAT 59.846 34.615 10.76 0.00 0.00 2.57
100 101 6.255020 GGCTTGTCTTTCATTAATGCTTGATG 59.745 38.462 10.76 4.85 0.00 3.07
101 102 6.237755 GCTTGTCTTTCATTAATGCTTGATGC 60.238 38.462 10.76 9.55 43.25 3.91
102 103 5.653507 TGTCTTTCATTAATGCTTGATGCC 58.346 37.500 10.76 0.00 42.00 4.40
103 104 4.736793 GTCTTTCATTAATGCTTGATGCCG 59.263 41.667 10.76 0.00 42.00 5.69
104 105 4.639755 TCTTTCATTAATGCTTGATGCCGA 59.360 37.500 10.76 0.00 42.00 5.54
105 106 4.979943 TTCATTAATGCTTGATGCCGAA 57.020 36.364 10.76 0.00 42.00 4.30
106 107 4.979943 TCATTAATGCTTGATGCCGAAA 57.020 36.364 10.76 0.00 42.00 3.46
107 108 5.321959 TCATTAATGCTTGATGCCGAAAA 57.678 34.783 10.76 0.00 42.00 2.29
108 109 5.101628 TCATTAATGCTTGATGCCGAAAAC 58.898 37.500 10.76 0.00 42.00 2.43
109 110 4.511617 TTAATGCTTGATGCCGAAAACA 57.488 36.364 0.00 0.00 42.00 2.83
110 111 2.642139 ATGCTTGATGCCGAAAACAG 57.358 45.000 0.00 0.00 42.00 3.16
111 112 1.317613 TGCTTGATGCCGAAAACAGT 58.682 45.000 0.00 0.00 42.00 3.55
112 113 1.001487 TGCTTGATGCCGAAAACAGTG 60.001 47.619 0.00 0.00 42.00 3.66
113 114 1.001378 GCTTGATGCCGAAAACAGTGT 60.001 47.619 0.00 0.00 35.15 3.55
114 115 2.543653 GCTTGATGCCGAAAACAGTGTT 60.544 45.455 1.64 1.64 35.15 3.32
115 116 3.300009 CTTGATGCCGAAAACAGTGTTC 58.700 45.455 9.40 0.00 0.00 3.18
116 117 1.606668 TGATGCCGAAAACAGTGTTCC 59.393 47.619 9.40 3.74 0.00 3.62
117 118 1.606668 GATGCCGAAAACAGTGTTCCA 59.393 47.619 9.40 2.75 0.00 3.53
118 119 0.736053 TGCCGAAAACAGTGTTCCAC 59.264 50.000 9.40 3.26 34.10 4.02
119 120 1.021968 GCCGAAAACAGTGTTCCACT 58.978 50.000 9.40 0.00 46.51 4.00
120 121 2.215196 GCCGAAAACAGTGTTCCACTA 58.785 47.619 9.40 0.00 43.43 2.74
121 122 2.223377 GCCGAAAACAGTGTTCCACTAG 59.777 50.000 9.40 0.00 43.43 2.57
122 123 2.223377 CCGAAAACAGTGTTCCACTAGC 59.777 50.000 9.40 0.00 43.43 3.42
123 124 3.131396 CGAAAACAGTGTTCCACTAGCT 58.869 45.455 9.40 0.00 43.43 3.32
124 125 4.304110 CGAAAACAGTGTTCCACTAGCTA 58.696 43.478 9.40 0.00 43.43 3.32
125 126 4.386049 CGAAAACAGTGTTCCACTAGCTAG 59.614 45.833 19.44 19.44 43.43 3.42
126 127 5.539048 GAAAACAGTGTTCCACTAGCTAGA 58.461 41.667 27.45 2.04 43.43 2.43
127 128 5.746990 AAACAGTGTTCCACTAGCTAGAT 57.253 39.130 27.45 8.78 43.43 1.98
128 129 4.727507 ACAGTGTTCCACTAGCTAGATG 57.272 45.455 27.45 19.16 43.43 2.90
129 130 3.449018 ACAGTGTTCCACTAGCTAGATGG 59.551 47.826 27.45 25.90 43.43 3.51
130 131 2.432510 AGTGTTCCACTAGCTAGATGGC 59.567 50.000 27.45 16.71 43.46 4.40
131 132 1.409064 TGTTCCACTAGCTAGATGGCG 59.591 52.381 27.45 9.34 37.29 5.69
132 133 1.409427 GTTCCACTAGCTAGATGGCGT 59.591 52.381 27.45 1.08 37.29 5.68
133 134 1.032794 TCCACTAGCTAGATGGCGTG 58.967 55.000 27.45 13.90 37.29 5.34
134 135 1.032794 CCACTAGCTAGATGGCGTGA 58.967 55.000 27.45 0.00 37.29 4.35
135 136 1.269309 CCACTAGCTAGATGGCGTGAC 60.269 57.143 27.45 0.00 37.29 3.67
136 137 1.033574 ACTAGCTAGATGGCGTGACC 58.966 55.000 27.45 0.00 37.29 4.02
137 138 0.039978 CTAGCTAGATGGCGTGACCG 60.040 60.000 16.15 0.00 43.94 4.79
138 139 0.750546 TAGCTAGATGGCGTGACCGT 60.751 55.000 0.00 0.00 43.94 4.83
139 140 0.750546 AGCTAGATGGCGTGACCGTA 60.751 55.000 0.00 0.00 43.94 4.02
140 141 0.314302 GCTAGATGGCGTGACCGTAT 59.686 55.000 0.00 0.00 43.94 3.06
141 142 1.666311 GCTAGATGGCGTGACCGTATC 60.666 57.143 0.00 0.00 43.94 2.24
142 143 0.956633 TAGATGGCGTGACCGTATCC 59.043 55.000 0.00 0.00 43.94 2.59
143 144 1.660575 GATGGCGTGACCGTATCCG 60.661 63.158 0.00 0.00 43.94 4.18
144 145 3.785189 ATGGCGTGACCGTATCCGC 62.785 63.158 0.00 0.00 43.94 5.54
145 146 4.501714 GGCGTGACCGTATCCGCA 62.502 66.667 15.99 0.00 44.20 5.69
146 147 2.954868 GCGTGACCGTATCCGCAG 60.955 66.667 11.93 0.00 42.84 5.18
147 148 2.954868 CGTGACCGTATCCGCAGC 60.955 66.667 0.00 0.00 0.00 5.25
148 149 2.494918 GTGACCGTATCCGCAGCT 59.505 61.111 0.00 0.00 0.00 4.24
149 150 1.153628 GTGACCGTATCCGCAGCTT 60.154 57.895 0.00 0.00 0.00 3.74
150 151 0.101759 GTGACCGTATCCGCAGCTTA 59.898 55.000 0.00 0.00 0.00 3.09
151 152 0.384309 TGACCGTATCCGCAGCTTAG 59.616 55.000 0.00 0.00 0.00 2.18
152 153 0.940047 GACCGTATCCGCAGCTTAGC 60.940 60.000 0.00 0.00 0.00 3.09
153 154 1.364171 CCGTATCCGCAGCTTAGCT 59.636 57.895 0.00 0.00 40.77 3.32
154 155 0.249489 CCGTATCCGCAGCTTAGCTT 60.249 55.000 3.00 0.00 36.40 3.74
155 156 1.571919 CGTATCCGCAGCTTAGCTTT 58.428 50.000 3.00 0.00 36.40 3.51
156 157 2.545113 CCGTATCCGCAGCTTAGCTTTA 60.545 50.000 3.00 0.00 36.40 1.85
157 158 3.318017 CGTATCCGCAGCTTAGCTTTAT 58.682 45.455 3.00 0.00 36.40 1.40
158 159 3.741344 CGTATCCGCAGCTTAGCTTTATT 59.259 43.478 3.00 0.00 36.40 1.40
159 160 4.143305 CGTATCCGCAGCTTAGCTTTATTC 60.143 45.833 3.00 0.00 36.40 1.75
160 161 3.260475 TCCGCAGCTTAGCTTTATTCA 57.740 42.857 3.00 0.00 36.40 2.57
161 162 3.605634 TCCGCAGCTTAGCTTTATTCAA 58.394 40.909 3.00 0.00 36.40 2.69
162 163 3.374058 TCCGCAGCTTAGCTTTATTCAAC 59.626 43.478 3.00 0.00 36.40 3.18
163 164 3.126858 CCGCAGCTTAGCTTTATTCAACA 59.873 43.478 3.00 0.00 36.40 3.33
164 165 4.201950 CCGCAGCTTAGCTTTATTCAACAT 60.202 41.667 3.00 0.00 36.40 2.71
165 166 4.966366 CGCAGCTTAGCTTTATTCAACATC 59.034 41.667 3.00 0.00 36.40 3.06
166 167 5.220739 CGCAGCTTAGCTTTATTCAACATCT 60.221 40.000 3.00 0.00 36.40 2.90
167 168 6.558909 GCAGCTTAGCTTTATTCAACATCTT 58.441 36.000 3.00 0.00 36.40 2.40
168 169 7.031975 GCAGCTTAGCTTTATTCAACATCTTT 58.968 34.615 3.00 0.00 36.40 2.52
169 170 7.543520 GCAGCTTAGCTTTATTCAACATCTTTT 59.456 33.333 3.00 0.00 36.40 2.27
170 171 9.415544 CAGCTTAGCTTTATTCAACATCTTTTT 57.584 29.630 3.00 0.00 36.40 1.94
171 172 9.631452 AGCTTAGCTTTATTCAACATCTTTTTC 57.369 29.630 0.00 0.00 33.89 2.29
172 173 8.578769 GCTTAGCTTTATTCAACATCTTTTTCG 58.421 33.333 0.00 0.00 0.00 3.46
173 174 9.612620 CTTAGCTTTATTCAACATCTTTTTCGT 57.387 29.630 0.00 0.00 0.00 3.85
174 175 7.858052 AGCTTTATTCAACATCTTTTTCGTG 57.142 32.000 0.00 0.00 0.00 4.35
175 176 6.863126 AGCTTTATTCAACATCTTTTTCGTGG 59.137 34.615 0.00 0.00 0.00 4.94
176 177 6.399986 GCTTTATTCAACATCTTTTTCGTGGC 60.400 38.462 0.00 0.00 0.00 5.01
177 178 3.363341 TTCAACATCTTTTTCGTGGCC 57.637 42.857 0.00 0.00 0.00 5.36
178 179 2.302260 TCAACATCTTTTTCGTGGCCA 58.698 42.857 0.00 0.00 0.00 5.36
179 180 2.293122 TCAACATCTTTTTCGTGGCCAG 59.707 45.455 5.11 0.00 0.00 4.85
180 181 1.247567 ACATCTTTTTCGTGGCCAGG 58.752 50.000 19.57 19.57 0.00 4.45
181 182 1.202879 ACATCTTTTTCGTGGCCAGGA 60.203 47.619 23.92 23.92 0.00 3.86
182 183 1.885887 CATCTTTTTCGTGGCCAGGAA 59.114 47.619 31.74 31.74 33.92 3.36
183 184 2.286365 TCTTTTTCGTGGCCAGGAAT 57.714 45.000 34.56 0.00 35.48 3.01
184 185 2.593026 TCTTTTTCGTGGCCAGGAATT 58.407 42.857 34.56 0.00 35.48 2.17
185 186 3.757270 TCTTTTTCGTGGCCAGGAATTA 58.243 40.909 34.56 24.43 35.48 1.40
186 187 4.145807 TCTTTTTCGTGGCCAGGAATTAA 58.854 39.130 34.56 28.19 35.48 1.40
187 188 4.770010 TCTTTTTCGTGGCCAGGAATTAAT 59.230 37.500 34.56 0.00 35.48 1.40
188 189 4.448537 TTTTCGTGGCCAGGAATTAATG 57.551 40.909 34.56 5.04 35.48 1.90
189 190 1.388547 TCGTGGCCAGGAATTAATGC 58.611 50.000 25.37 0.00 0.00 3.56
190 191 1.102154 CGTGGCCAGGAATTAATGCA 58.898 50.000 20.97 0.00 0.00 3.96
191 192 1.202290 CGTGGCCAGGAATTAATGCAC 60.202 52.381 20.97 0.00 0.00 4.57
192 193 1.136891 GTGGCCAGGAATTAATGCACC 59.863 52.381 5.11 0.00 0.00 5.01
193 194 1.272928 TGGCCAGGAATTAATGCACCA 60.273 47.619 0.00 0.00 0.00 4.17
194 195 1.136891 GGCCAGGAATTAATGCACCAC 59.863 52.381 0.00 0.00 0.00 4.16
195 196 1.202290 GCCAGGAATTAATGCACCACG 60.202 52.381 0.00 0.00 0.00 4.94
196 197 1.405105 CCAGGAATTAATGCACCACGG 59.595 52.381 0.00 0.00 0.00 4.94
197 198 1.405105 CAGGAATTAATGCACCACGGG 59.595 52.381 0.00 0.00 0.00 5.28
198 199 0.102300 GGAATTAATGCACCACGGGC 59.898 55.000 0.00 0.00 0.00 6.13
199 200 0.102300 GAATTAATGCACCACGGGCC 59.898 55.000 0.00 0.00 0.00 5.80
200 201 0.613292 AATTAATGCACCACGGGCCA 60.613 50.000 4.39 0.00 0.00 5.36
201 202 0.613292 ATTAATGCACCACGGGCCAA 60.613 50.000 4.39 0.00 0.00 4.52
202 203 0.827925 TTAATGCACCACGGGCCAAA 60.828 50.000 4.39 0.00 0.00 3.28
203 204 0.613292 TAATGCACCACGGGCCAAAT 60.613 50.000 4.39 0.00 0.00 2.32
204 205 1.887344 AATGCACCACGGGCCAAATC 61.887 55.000 4.39 0.00 0.00 2.17
205 206 2.676471 GCACCACGGGCCAAATCT 60.676 61.111 4.39 0.00 0.00 2.40
206 207 2.275380 GCACCACGGGCCAAATCTT 61.275 57.895 4.39 0.00 0.00 2.40
207 208 0.963355 GCACCACGGGCCAAATCTTA 60.963 55.000 4.39 0.00 0.00 2.10
208 209 1.094785 CACCACGGGCCAAATCTTAG 58.905 55.000 4.39 0.00 0.00 2.18
209 210 0.679960 ACCACGGGCCAAATCTTAGC 60.680 55.000 4.39 0.00 0.00 3.09
210 211 1.714899 CCACGGGCCAAATCTTAGCG 61.715 60.000 4.39 0.00 0.00 4.26
211 212 1.024579 CACGGGCCAAATCTTAGCGT 61.025 55.000 4.39 0.00 0.00 5.07
212 213 0.538118 ACGGGCCAAATCTTAGCGTA 59.462 50.000 4.39 0.00 0.00 4.42
213 214 0.935196 CGGGCCAAATCTTAGCGTAC 59.065 55.000 4.39 0.00 0.00 3.67
214 215 1.472728 CGGGCCAAATCTTAGCGTACT 60.473 52.381 4.39 0.00 0.00 2.73
215 216 2.210961 GGGCCAAATCTTAGCGTACTC 58.789 52.381 4.39 0.00 0.00 2.59
216 217 2.158943 GGGCCAAATCTTAGCGTACTCT 60.159 50.000 4.39 0.00 0.00 3.24
217 218 3.124560 GGCCAAATCTTAGCGTACTCTC 58.875 50.000 0.00 0.00 0.00 3.20
218 219 3.430374 GGCCAAATCTTAGCGTACTCTCA 60.430 47.826 0.00 0.00 0.00 3.27
219 220 4.181578 GCCAAATCTTAGCGTACTCTCAA 58.818 43.478 0.00 0.00 0.00 3.02
220 221 4.811557 GCCAAATCTTAGCGTACTCTCAAT 59.188 41.667 0.00 0.00 0.00 2.57
221 222 5.050702 GCCAAATCTTAGCGTACTCTCAATC 60.051 44.000 0.00 0.00 0.00 2.67
222 223 6.042777 CCAAATCTTAGCGTACTCTCAATCA 58.957 40.000 0.00 0.00 0.00 2.57
223 224 6.703607 CCAAATCTTAGCGTACTCTCAATCAT 59.296 38.462 0.00 0.00 0.00 2.45
224 225 7.225538 CCAAATCTTAGCGTACTCTCAATCATT 59.774 37.037 0.00 0.00 0.00 2.57
225 226 7.938563 AATCTTAGCGTACTCTCAATCATTC 57.061 36.000 0.00 0.00 0.00 2.67
226 227 6.701145 TCTTAGCGTACTCTCAATCATTCT 57.299 37.500 0.00 0.00 0.00 2.40
227 228 7.101652 TCTTAGCGTACTCTCAATCATTCTT 57.898 36.000 0.00 0.00 0.00 2.52
228 229 6.975197 TCTTAGCGTACTCTCAATCATTCTTG 59.025 38.462 0.00 0.00 0.00 3.02
229 230 5.330455 AGCGTACTCTCAATCATTCTTGA 57.670 39.130 0.00 0.00 36.00 3.02
230 231 5.105752 AGCGTACTCTCAATCATTCTTGAC 58.894 41.667 0.00 0.00 33.85 3.18
231 232 4.027295 GCGTACTCTCAATCATTCTTGACG 60.027 45.833 0.00 0.00 33.85 4.35
232 233 5.332707 CGTACTCTCAATCATTCTTGACGA 58.667 41.667 0.00 0.00 33.85 4.20
233 234 5.974158 CGTACTCTCAATCATTCTTGACGAT 59.026 40.000 0.00 0.00 33.85 3.73
234 235 6.141527 CGTACTCTCAATCATTCTTGACGATC 59.858 42.308 0.00 0.00 33.85 3.69
235 236 5.355596 ACTCTCAATCATTCTTGACGATCC 58.644 41.667 0.00 0.00 33.85 3.36
236 237 5.105187 ACTCTCAATCATTCTTGACGATCCA 60.105 40.000 0.00 0.00 33.85 3.41
237 238 5.733676 TCTCAATCATTCTTGACGATCCAA 58.266 37.500 0.00 0.00 33.85 3.53
238 239 6.351711 TCTCAATCATTCTTGACGATCCAAT 58.648 36.000 0.00 0.00 33.85 3.16
239 240 6.825213 TCTCAATCATTCTTGACGATCCAATT 59.175 34.615 0.00 0.00 33.85 2.32
240 241 7.011763 TCTCAATCATTCTTGACGATCCAATTC 59.988 37.037 0.00 0.00 33.85 2.17
241 242 6.825213 TCAATCATTCTTGACGATCCAATTCT 59.175 34.615 0.00 0.00 33.85 2.40
242 243 7.337689 TCAATCATTCTTGACGATCCAATTCTT 59.662 33.333 0.00 0.00 33.85 2.52
243 244 7.636150 ATCATTCTTGACGATCCAATTCTTT 57.364 32.000 0.00 0.00 33.85 2.52
244 245 6.845302 TCATTCTTGACGATCCAATTCTTTG 58.155 36.000 0.00 0.00 0.00 2.77
245 246 6.430925 TCATTCTTGACGATCCAATTCTTTGT 59.569 34.615 0.00 0.00 0.00 2.83
246 247 7.606073 TCATTCTTGACGATCCAATTCTTTGTA 59.394 33.333 0.00 0.00 0.00 2.41
247 248 6.721571 TCTTGACGATCCAATTCTTTGTAC 57.278 37.500 0.00 0.00 0.00 2.90
248 249 6.464222 TCTTGACGATCCAATTCTTTGTACT 58.536 36.000 0.00 0.00 0.00 2.73
249 250 7.608153 TCTTGACGATCCAATTCTTTGTACTA 58.392 34.615 0.00 0.00 0.00 1.82
250 251 7.544566 TCTTGACGATCCAATTCTTTGTACTAC 59.455 37.037 0.00 0.00 0.00 2.73
251 252 6.693466 TGACGATCCAATTCTTTGTACTACA 58.307 36.000 0.00 0.00 0.00 2.74
252 253 7.327975 TGACGATCCAATTCTTTGTACTACAT 58.672 34.615 0.00 0.00 0.00 2.29
253 254 7.822334 TGACGATCCAATTCTTTGTACTACATT 59.178 33.333 0.00 0.00 0.00 2.71
254 255 8.561738 ACGATCCAATTCTTTGTACTACATTT 57.438 30.769 0.00 0.00 0.00 2.32
255 256 8.665685 ACGATCCAATTCTTTGTACTACATTTC 58.334 33.333 0.00 0.00 0.00 2.17
256 257 8.664798 CGATCCAATTCTTTGTACTACATTTCA 58.335 33.333 0.00 0.00 0.00 2.69
272 273 8.388103 ACTACATTTCAATCATTGTTAGTACGC 58.612 33.333 0.00 0.00 0.00 4.42
273 274 7.377766 ACATTTCAATCATTGTTAGTACGCT 57.622 32.000 0.00 0.00 0.00 5.07
274 275 7.243487 ACATTTCAATCATTGTTAGTACGCTG 58.757 34.615 0.00 0.00 0.00 5.18
275 276 4.857871 TCAATCATTGTTAGTACGCTGC 57.142 40.909 0.00 0.00 0.00 5.25
276 277 4.249661 TCAATCATTGTTAGTACGCTGCA 58.750 39.130 0.00 0.00 0.00 4.41
277 278 4.329801 TCAATCATTGTTAGTACGCTGCAG 59.670 41.667 10.11 10.11 0.00 4.41
278 279 1.999735 TCATTGTTAGTACGCTGCAGC 59.000 47.619 29.12 29.12 37.78 5.25
298 299 4.120792 GCGACTAGCTAGGGTTTTAACT 57.879 45.455 24.35 0.00 44.04 2.24
299 300 5.254339 GCGACTAGCTAGGGTTTTAACTA 57.746 43.478 24.35 0.00 44.04 2.24
300 301 5.280164 GCGACTAGCTAGGGTTTTAACTAG 58.720 45.833 24.35 2.27 44.04 2.57
307 308 2.791655 AGGGTTTTAACTAGCACAGGC 58.208 47.619 0.00 0.00 41.61 4.85
308 309 2.107552 AGGGTTTTAACTAGCACAGGCA 59.892 45.455 0.00 0.00 44.61 4.75
309 310 2.228103 GGGTTTTAACTAGCACAGGCAC 59.772 50.000 0.00 0.00 44.61 5.01
310 311 3.146847 GGTTTTAACTAGCACAGGCACT 58.853 45.455 0.00 0.00 44.61 4.40
311 312 3.188667 GGTTTTAACTAGCACAGGCACTC 59.811 47.826 0.00 0.00 44.61 3.51
312 313 4.065789 GTTTTAACTAGCACAGGCACTCT 58.934 43.478 0.00 0.00 44.61 3.24
313 314 4.351874 TTTAACTAGCACAGGCACTCTT 57.648 40.909 0.00 0.00 44.61 2.85
314 315 2.464157 AACTAGCACAGGCACTCTTC 57.536 50.000 0.00 0.00 44.61 2.87
315 316 0.610687 ACTAGCACAGGCACTCTTCC 59.389 55.000 0.00 0.00 44.61 3.46
316 317 0.610174 CTAGCACAGGCACTCTTCCA 59.390 55.000 0.00 0.00 44.61 3.53
317 318 0.321671 TAGCACAGGCACTCTTCCAC 59.678 55.000 0.00 0.00 44.61 4.02
318 319 1.227943 GCACAGGCACTCTTCCACA 60.228 57.895 0.00 0.00 40.72 4.17
319 320 0.607489 GCACAGGCACTCTTCCACAT 60.607 55.000 0.00 0.00 40.72 3.21
320 321 1.901591 CACAGGCACTCTTCCACATT 58.098 50.000 0.00 0.00 34.60 2.71
321 322 2.233271 CACAGGCACTCTTCCACATTT 58.767 47.619 0.00 0.00 34.60 2.32
322 323 2.624838 CACAGGCACTCTTCCACATTTT 59.375 45.455 0.00 0.00 34.60 1.82
323 324 2.624838 ACAGGCACTCTTCCACATTTTG 59.375 45.455 0.00 0.00 34.60 2.44
324 325 1.615392 AGGCACTCTTCCACATTTTGC 59.385 47.619 0.00 0.00 0.00 3.68
325 326 1.340889 GGCACTCTTCCACATTTTGCA 59.659 47.619 0.00 0.00 0.00 4.08
326 327 2.397549 GCACTCTTCCACATTTTGCAC 58.602 47.619 0.00 0.00 0.00 4.57
327 328 2.653890 CACTCTTCCACATTTTGCACG 58.346 47.619 0.00 0.00 0.00 5.34
328 329 1.001378 ACTCTTCCACATTTTGCACGC 60.001 47.619 0.00 0.00 0.00 5.34
329 330 0.040514 TCTTCCACATTTTGCACGCG 60.041 50.000 3.53 3.53 0.00 6.01
330 331 1.608093 CTTCCACATTTTGCACGCGC 61.608 55.000 5.73 0.00 39.24 6.86
331 332 3.460278 CCACATTTTGCACGCGCG 61.460 61.111 30.96 30.96 42.97 6.86
332 333 4.107168 CACATTTTGCACGCGCGC 62.107 61.111 32.58 23.91 42.97 6.86
333 334 4.620797 ACATTTTGCACGCGCGCA 62.621 55.556 32.58 19.25 42.97 6.09
334 335 4.107168 CATTTTGCACGCGCGCAC 62.107 61.111 32.58 22.92 42.87 5.34
335 336 4.620797 ATTTTGCACGCGCGCACA 62.621 55.556 32.58 25.51 42.87 4.57
336 337 4.836688 TTTTGCACGCGCGCACAA 62.837 55.556 32.58 29.65 42.87 3.33
348 349 3.394588 GCACAAGCGCGTATGCTA 58.605 55.556 19.39 0.00 46.60 3.49
349 350 1.012234 GCACAAGCGCGTATGCTAC 60.012 57.895 19.39 1.64 46.60 3.58
360 361 1.442087 CGTATGCTACGTCGCTAAACG 59.558 52.381 13.63 14.76 46.41 3.60
361 362 1.186623 GTATGCTACGTCGCTAAACGC 59.813 52.381 13.63 0.00 46.40 4.84
362 363 0.457166 ATGCTACGTCGCTAAACGCA 60.457 50.000 13.63 1.52 46.40 5.24
363 364 1.339235 TGCTACGTCGCTAAACGCAC 61.339 55.000 13.63 0.00 46.40 5.34
364 365 1.339235 GCTACGTCGCTAAACGCACA 61.339 55.000 4.57 0.00 46.40 4.57
365 366 0.361184 CTACGTCGCTAAACGCACAC 59.639 55.000 0.00 0.00 46.40 3.82
366 367 1.329382 TACGTCGCTAAACGCACACG 61.329 55.000 0.00 0.00 46.40 4.49
367 368 2.202008 GTCGCTAAACGCACACGC 60.202 61.111 0.00 0.00 45.53 5.34
368 369 3.408020 TCGCTAAACGCACACGCC 61.408 61.111 0.00 0.00 45.53 5.68
369 370 4.439472 CGCTAAACGCACACGCCC 62.439 66.667 0.00 0.00 45.53 6.13
370 371 3.350612 GCTAAACGCACACGCCCA 61.351 61.111 0.00 0.00 45.53 5.36
371 372 2.554272 CTAAACGCACACGCCCAC 59.446 61.111 0.00 0.00 45.53 4.61
372 373 3.289816 CTAAACGCACACGCCCACG 62.290 63.158 0.00 0.00 45.53 4.94
383 384 2.260434 GCCCACGCGTACTCTTCA 59.740 61.111 13.44 0.00 0.00 3.02
384 385 1.373748 GCCCACGCGTACTCTTCAA 60.374 57.895 13.44 0.00 0.00 2.69
385 386 1.352156 GCCCACGCGTACTCTTCAAG 61.352 60.000 13.44 0.00 0.00 3.02
386 387 0.736325 CCCACGCGTACTCTTCAAGG 60.736 60.000 13.44 5.31 0.00 3.61
387 388 0.038526 CCACGCGTACTCTTCAAGGT 60.039 55.000 13.44 0.00 0.00 3.50
388 389 1.604693 CCACGCGTACTCTTCAAGGTT 60.605 52.381 13.44 0.00 0.00 3.50
389 390 2.352030 CCACGCGTACTCTTCAAGGTTA 60.352 50.000 13.44 0.00 0.00 2.85
390 391 3.311106 CACGCGTACTCTTCAAGGTTAA 58.689 45.455 13.44 0.00 0.00 2.01
391 392 3.120782 CACGCGTACTCTTCAAGGTTAAC 59.879 47.826 13.44 0.00 0.00 2.01
392 393 3.243501 ACGCGTACTCTTCAAGGTTAACA 60.244 43.478 11.67 0.00 0.00 2.41
393 394 3.364023 CGCGTACTCTTCAAGGTTAACAG 59.636 47.826 8.10 0.00 0.00 3.16
394 395 3.123116 GCGTACTCTTCAAGGTTAACAGC 59.877 47.826 8.10 0.00 0.00 4.40
395 396 4.304110 CGTACTCTTCAAGGTTAACAGCA 58.696 43.478 8.10 0.00 0.00 4.41
396 397 4.150098 CGTACTCTTCAAGGTTAACAGCAC 59.850 45.833 8.10 0.00 0.00 4.40
397 398 3.477530 ACTCTTCAAGGTTAACAGCACC 58.522 45.455 8.10 0.00 34.06 5.01
398 399 2.480419 CTCTTCAAGGTTAACAGCACCG 59.520 50.000 8.10 0.00 39.56 4.94
399 400 0.948678 TTCAAGGTTAACAGCACCGC 59.051 50.000 8.10 0.00 39.56 5.68
400 401 0.887387 TCAAGGTTAACAGCACCGCC 60.887 55.000 8.10 0.00 39.56 6.13
401 402 1.149627 AAGGTTAACAGCACCGCCA 59.850 52.632 8.10 0.00 39.56 5.69
402 403 0.889186 AAGGTTAACAGCACCGCCAG 60.889 55.000 8.10 0.00 39.56 4.85
403 404 2.561373 GTTAACAGCACCGCCAGC 59.439 61.111 0.00 0.00 0.00 4.85
404 405 2.112087 TTAACAGCACCGCCAGCA 59.888 55.556 0.00 0.00 0.00 4.41
405 406 1.965930 TTAACAGCACCGCCAGCAG 60.966 57.895 0.00 0.00 0.00 4.24
527 528 1.604593 GCTCCTCAAAGCAGCCCAA 60.605 57.895 0.00 0.00 42.05 4.12
533 534 0.112218 TCAAAGCAGCCCAAAGCCTA 59.888 50.000 0.00 0.00 45.47 3.93
717 728 0.107017 CATAGCCACTGTCCCCCTTG 60.107 60.000 0.00 0.00 0.00 3.61
771 782 5.707931 TGCGATTTCAGATCTGAGCTATAG 58.292 41.667 26.02 19.98 41.13 1.31
772 783 5.101628 GCGATTTCAGATCTGAGCTATAGG 58.898 45.833 23.92 14.51 41.13 2.57
773 784 5.101628 CGATTTCAGATCTGAGCTATAGGC 58.898 45.833 23.92 9.17 41.13 3.93
885 908 4.208686 CCCCTACGCTGTCCTCGC 62.209 72.222 0.00 0.00 0.00 5.03
911 934 4.796495 CCGGTAAGCAGCACCCCC 62.796 72.222 0.00 0.00 31.96 5.40
1072 1099 0.392863 TCAGGCATGGGTCATGTTCG 60.393 55.000 0.00 0.00 43.10 3.95
1237 1264 2.275880 GCACCATTTGCCAGGCTTA 58.724 52.632 14.15 0.02 46.63 3.09
1290 1317 5.178061 CAAGATAGCATCAACACCAGTGTA 58.822 41.667 3.43 0.00 44.13 2.90
1368 1396 1.948104 TTCACAACACGTTCAGGAGG 58.052 50.000 0.00 0.00 0.00 4.30
1461 1489 1.267574 GGAGACCATCTGGCCAGACA 61.268 60.000 37.39 17.78 40.75 3.41
1628 1658 3.560025 GGGGCAATAGATGGTACTCATGG 60.560 52.174 0.00 0.00 35.97 3.66
1657 1687 3.442273 CAGAGTTCCTAGGTCACAGTCTC 59.558 52.174 9.08 7.39 0.00 3.36
1859 1889 4.565360 TGCTGGCTATGCATGTCC 57.435 55.556 10.16 10.66 35.31 4.02
2050 2080 1.215423 AGAAGCCATTCCACCCATACC 59.785 52.381 0.00 0.00 35.94 2.73
2074 2104 5.187186 CCCACTCAGGTTAAGCTAGTTCTTA 59.813 44.000 6.90 0.00 34.66 2.10
2078 2108 8.521176 CACTCAGGTTAAGCTAGTTCTTACTTA 58.479 37.037 6.90 0.00 35.78 2.24
2163 2193 1.135489 GTCGAGCCTGACGATGTTGTA 60.135 52.381 0.00 0.00 41.62 2.41
2272 2302 3.009916 AGGTCAGTGCAGGATTTGAAGAT 59.990 43.478 0.00 0.00 0.00 2.40
2273 2303 3.760684 GGTCAGTGCAGGATTTGAAGATT 59.239 43.478 0.00 0.00 0.00 2.40
2274 2304 4.219288 GGTCAGTGCAGGATTTGAAGATTT 59.781 41.667 0.00 0.00 0.00 2.17
2329 2395 1.440708 CACCTGAAGCAGAAGCAGAG 58.559 55.000 0.00 0.00 45.49 3.35
2349 2427 4.079958 AGAGGTAGAAGAAGAGGAGAGGAC 60.080 50.000 0.00 0.00 0.00 3.85
2350 2428 3.594232 AGGTAGAAGAAGAGGAGAGGACA 59.406 47.826 0.00 0.00 0.00 4.02
2372 2462 1.202428 GGAAGATCTGGTAGCACCGAC 60.202 57.143 0.00 0.00 42.58 4.79
2382 2472 1.985447 TAGCACCGACGAACTAGCCG 61.985 60.000 0.00 3.89 0.00 5.52
2513 2603 4.408276 AGCTCACCACTAGTTAGAAGTGA 58.592 43.478 4.84 12.19 45.89 3.41
2569 2659 3.192541 TGTCATATGTGCGCCTAATGT 57.807 42.857 4.18 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.560503 CATTGCTTTTCGCCGTAAAGAA 58.439 40.909 18.56 6.59 38.05 2.52
1 2 2.667171 GCATTGCTTTTCGCCGTAAAGA 60.667 45.455 18.56 0.77 38.05 2.52
2 3 1.648681 GCATTGCTTTTCGCCGTAAAG 59.351 47.619 11.28 11.28 38.05 1.85
3 4 1.692296 GCATTGCTTTTCGCCGTAAA 58.308 45.000 0.16 0.00 38.05 2.01
4 5 0.453615 CGCATTGCTTTTCGCCGTAA 60.454 50.000 7.12 0.00 38.05 3.18
5 6 1.133664 CGCATTGCTTTTCGCCGTA 59.866 52.632 7.12 0.00 38.05 4.02
6 7 2.126888 CGCATTGCTTTTCGCCGT 60.127 55.556 7.12 0.00 38.05 5.68
7 8 3.535491 GCGCATTGCTTTTCGCCG 61.535 61.111 0.30 0.00 41.53 6.46
8 9 3.535491 CGCGCATTGCTTTTCGCC 61.535 61.111 8.75 0.00 44.12 5.54
9 10 4.182206 GCGCGCATTGCTTTTCGC 62.182 61.111 29.10 11.87 43.27 4.70
10 11 2.800331 TGCGCGCATTGCTTTTCG 60.800 55.556 33.09 6.16 43.27 3.46
11 12 1.277495 AAGTGCGCGCATTGCTTTTC 61.277 50.000 38.62 21.37 43.27 2.29
12 13 0.875474 AAAGTGCGCGCATTGCTTTT 60.875 45.000 38.62 25.84 43.27 2.27
13 14 1.277495 GAAAGTGCGCGCATTGCTTT 61.277 50.000 34.34 34.34 43.27 3.51
14 15 1.730547 GAAAGTGCGCGCATTGCTT 60.731 52.632 38.62 30.56 43.27 3.91
15 16 2.126734 GAAAGTGCGCGCATTGCT 60.127 55.556 38.62 26.59 43.27 3.91
16 17 3.526536 CGAAAGTGCGCGCATTGC 61.527 61.111 38.62 26.49 41.47 3.56
17 18 2.582202 ATCCGAAAGTGCGCGCATTG 62.582 55.000 38.62 24.27 0.00 2.82
18 19 1.922135 AATCCGAAAGTGCGCGCATT 61.922 50.000 38.62 31.53 0.00 3.56
19 20 1.922135 AAATCCGAAAGTGCGCGCAT 61.922 50.000 38.62 22.76 0.00 4.73
20 21 1.292571 TAAATCCGAAAGTGCGCGCA 61.293 50.000 33.09 33.09 0.00 6.09
21 22 0.586502 CTAAATCCGAAAGTGCGCGC 60.587 55.000 27.26 27.26 0.00 6.86
22 23 0.719465 ACTAAATCCGAAAGTGCGCG 59.281 50.000 0.00 0.00 0.00 6.86
23 24 3.554324 TGATACTAAATCCGAAAGTGCGC 59.446 43.478 0.00 0.00 0.00 6.09
24 25 5.712217 TTGATACTAAATCCGAAAGTGCG 57.288 39.130 0.00 0.00 0.00 5.34
25 26 9.997482 TTTTATTGATACTAAATCCGAAAGTGC 57.003 29.630 0.00 0.00 0.00 4.40
32 33 9.525007 GCATACGTTTTATTGATACTAAATCCG 57.475 33.333 0.00 0.00 0.00 4.18
37 38 9.373603 ACACTGCATACGTTTTATTGATACTAA 57.626 29.630 0.00 0.00 0.00 2.24
38 39 8.936070 ACACTGCATACGTTTTATTGATACTA 57.064 30.769 0.00 0.00 0.00 1.82
39 40 7.764443 AGACACTGCATACGTTTTATTGATACT 59.236 33.333 0.00 0.00 0.00 2.12
40 41 7.906160 AGACACTGCATACGTTTTATTGATAC 58.094 34.615 0.00 0.00 0.00 2.24
41 42 8.487313 AAGACACTGCATACGTTTTATTGATA 57.513 30.769 0.00 0.00 0.00 2.15
42 43 6.985188 AGACACTGCATACGTTTTATTGAT 57.015 33.333 0.00 0.00 0.00 2.57
43 44 6.795098 AAGACACTGCATACGTTTTATTGA 57.205 33.333 0.00 0.00 0.00 2.57
44 45 7.075121 TCAAAGACACTGCATACGTTTTATTG 58.925 34.615 0.00 0.00 0.00 1.90
45 46 7.197071 TCAAAGACACTGCATACGTTTTATT 57.803 32.000 0.00 0.00 0.00 1.40
46 47 6.795098 TCAAAGACACTGCATACGTTTTAT 57.205 33.333 0.00 0.00 0.00 1.40
47 48 6.795098 ATCAAAGACACTGCATACGTTTTA 57.205 33.333 0.00 0.00 0.00 1.52
48 49 5.689383 ATCAAAGACACTGCATACGTTTT 57.311 34.783 0.00 0.00 0.00 2.43
49 50 5.689383 AATCAAAGACACTGCATACGTTT 57.311 34.783 0.00 0.00 0.00 3.60
50 51 5.699001 TGTAATCAAAGACACTGCATACGTT 59.301 36.000 0.00 0.00 0.00 3.99
51 52 5.234752 TGTAATCAAAGACACTGCATACGT 58.765 37.500 0.00 0.00 0.00 3.57
52 53 5.220472 CCTGTAATCAAAGACACTGCATACG 60.220 44.000 0.00 0.00 0.00 3.06
53 54 5.447818 GCCTGTAATCAAAGACACTGCATAC 60.448 44.000 0.00 0.00 0.00 2.39
54 55 4.635765 GCCTGTAATCAAAGACACTGCATA 59.364 41.667 0.00 0.00 0.00 3.14
55 56 3.441572 GCCTGTAATCAAAGACACTGCAT 59.558 43.478 0.00 0.00 0.00 3.96
56 57 2.813754 GCCTGTAATCAAAGACACTGCA 59.186 45.455 0.00 0.00 0.00 4.41
57 58 3.077359 AGCCTGTAATCAAAGACACTGC 58.923 45.455 0.00 0.00 0.00 4.40
58 59 4.516698 ACAAGCCTGTAATCAAAGACACTG 59.483 41.667 0.00 0.00 32.54 3.66
59 60 4.718961 ACAAGCCTGTAATCAAAGACACT 58.281 39.130 0.00 0.00 32.54 3.55
60 61 4.757149 AGACAAGCCTGTAATCAAAGACAC 59.243 41.667 0.00 0.00 35.30 3.67
61 62 4.973168 AGACAAGCCTGTAATCAAAGACA 58.027 39.130 0.00 0.00 35.30 3.41
62 63 5.948992 AAGACAAGCCTGTAATCAAAGAC 57.051 39.130 0.00 0.00 35.30 3.01
63 64 6.061441 TGAAAGACAAGCCTGTAATCAAAGA 58.939 36.000 0.00 0.00 35.30 2.52
64 65 6.317789 TGAAAGACAAGCCTGTAATCAAAG 57.682 37.500 0.00 0.00 35.30 2.77
65 66 6.899393 ATGAAAGACAAGCCTGTAATCAAA 57.101 33.333 0.00 0.00 35.30 2.69
66 67 6.899393 AATGAAAGACAAGCCTGTAATCAA 57.101 33.333 0.00 0.00 35.30 2.57
67 68 7.994425 TTAATGAAAGACAAGCCTGTAATCA 57.006 32.000 0.00 0.00 35.30 2.57
68 69 7.433425 GCATTAATGAAAGACAAGCCTGTAATC 59.567 37.037 19.73 0.00 35.30 1.75
69 70 7.123247 AGCATTAATGAAAGACAAGCCTGTAAT 59.877 33.333 19.73 0.00 35.30 1.89
70 71 6.434028 AGCATTAATGAAAGACAAGCCTGTAA 59.566 34.615 19.73 0.00 35.30 2.41
71 72 5.945784 AGCATTAATGAAAGACAAGCCTGTA 59.054 36.000 19.73 0.00 35.30 2.74
72 73 4.768968 AGCATTAATGAAAGACAAGCCTGT 59.231 37.500 19.73 0.00 38.98 4.00
73 74 5.320549 AGCATTAATGAAAGACAAGCCTG 57.679 39.130 19.73 0.00 0.00 4.85
74 75 5.477984 TCAAGCATTAATGAAAGACAAGCCT 59.522 36.000 19.73 0.00 0.00 4.58
75 76 5.713025 TCAAGCATTAATGAAAGACAAGCC 58.287 37.500 19.73 0.00 0.00 4.35
76 77 6.237755 GCATCAAGCATTAATGAAAGACAAGC 60.238 38.462 19.73 12.35 44.79 4.01
77 78 7.218145 GCATCAAGCATTAATGAAAGACAAG 57.782 36.000 19.73 7.51 44.79 3.16
93 94 1.001378 ACACTGTTTTCGGCATCAAGC 60.001 47.619 0.00 0.00 44.65 4.01
94 95 3.300009 GAACACTGTTTTCGGCATCAAG 58.700 45.455 0.00 0.00 0.00 3.02
95 96 2.034053 GGAACACTGTTTTCGGCATCAA 59.966 45.455 0.00 0.00 0.00 2.57
96 97 1.606668 GGAACACTGTTTTCGGCATCA 59.393 47.619 0.00 0.00 0.00 3.07
97 98 1.606668 TGGAACACTGTTTTCGGCATC 59.393 47.619 0.00 0.00 0.00 3.91
98 99 1.686355 TGGAACACTGTTTTCGGCAT 58.314 45.000 0.00 0.00 0.00 4.40
99 100 3.176728 TGGAACACTGTTTTCGGCA 57.823 47.368 0.00 0.00 0.00 5.69
111 112 1.409064 CGCCATCTAGCTAGTGGAACA 59.591 52.381 30.59 11.85 41.43 3.18
112 113 1.409427 ACGCCATCTAGCTAGTGGAAC 59.591 52.381 30.59 19.46 34.94 3.62
113 114 1.409064 CACGCCATCTAGCTAGTGGAA 59.591 52.381 30.59 12.77 34.94 3.53
114 115 1.032794 CACGCCATCTAGCTAGTGGA 58.967 55.000 30.59 13.26 34.94 4.02
115 116 1.032794 TCACGCCATCTAGCTAGTGG 58.967 55.000 25.84 25.84 36.09 4.00
116 117 1.269309 GGTCACGCCATCTAGCTAGTG 60.269 57.143 20.10 16.17 37.17 2.74
117 118 1.033574 GGTCACGCCATCTAGCTAGT 58.966 55.000 20.10 5.41 37.17 2.57
118 119 0.039978 CGGTCACGCCATCTAGCTAG 60.040 60.000 15.01 15.01 36.97 3.42
119 120 0.750546 ACGGTCACGCCATCTAGCTA 60.751 55.000 0.00 0.00 46.04 3.32
120 121 0.750546 TACGGTCACGCCATCTAGCT 60.751 55.000 0.00 0.00 46.04 3.32
121 122 0.314302 ATACGGTCACGCCATCTAGC 59.686 55.000 0.00 0.00 46.04 3.42
122 123 1.068472 GGATACGGTCACGCCATCTAG 60.068 57.143 0.00 0.00 46.04 2.43
123 124 0.956633 GGATACGGTCACGCCATCTA 59.043 55.000 0.00 0.00 46.04 1.98
124 125 1.740285 GGATACGGTCACGCCATCT 59.260 57.895 0.00 0.00 46.04 2.90
125 126 4.338327 GGATACGGTCACGCCATC 57.662 61.111 0.00 0.00 46.04 3.51
137 138 4.750098 TGAATAAAGCTAAGCTGCGGATAC 59.250 41.667 0.00 0.00 39.62 2.24
138 139 4.956085 TGAATAAAGCTAAGCTGCGGATA 58.044 39.130 0.00 0.00 39.62 2.59
139 140 3.808728 TGAATAAAGCTAAGCTGCGGAT 58.191 40.909 0.00 0.00 39.62 4.18
140 141 3.260475 TGAATAAAGCTAAGCTGCGGA 57.740 42.857 0.00 0.00 39.62 5.54
141 142 3.126858 TGTTGAATAAAGCTAAGCTGCGG 59.873 43.478 0.00 0.00 39.62 5.69
142 143 4.340894 TGTTGAATAAAGCTAAGCTGCG 57.659 40.909 0.00 0.00 39.62 5.18
143 144 6.129053 AGATGTTGAATAAAGCTAAGCTGC 57.871 37.500 0.00 0.00 39.62 5.25
144 145 8.976986 AAAAGATGTTGAATAAAGCTAAGCTG 57.023 30.769 0.00 0.00 39.62 4.24
145 146 9.631452 GAAAAAGATGTTGAATAAAGCTAAGCT 57.369 29.630 0.00 0.00 42.56 3.74
146 147 8.578769 CGAAAAAGATGTTGAATAAAGCTAAGC 58.421 33.333 0.00 0.00 0.00 3.09
147 148 9.612620 ACGAAAAAGATGTTGAATAAAGCTAAG 57.387 29.630 0.00 0.00 0.00 2.18
148 149 9.393249 CACGAAAAAGATGTTGAATAAAGCTAA 57.607 29.630 0.00 0.00 0.00 3.09
149 150 8.020819 CCACGAAAAAGATGTTGAATAAAGCTA 58.979 33.333 0.00 0.00 0.00 3.32
150 151 6.863126 CCACGAAAAAGATGTTGAATAAAGCT 59.137 34.615 0.00 0.00 0.00 3.74
151 152 6.399986 GCCACGAAAAAGATGTTGAATAAAGC 60.400 38.462 0.00 0.00 0.00 3.51
152 153 6.089417 GGCCACGAAAAAGATGTTGAATAAAG 59.911 38.462 0.00 0.00 0.00 1.85
153 154 5.923684 GGCCACGAAAAAGATGTTGAATAAA 59.076 36.000 0.00 0.00 0.00 1.40
154 155 5.010112 TGGCCACGAAAAAGATGTTGAATAA 59.990 36.000 0.00 0.00 0.00 1.40
155 156 4.520874 TGGCCACGAAAAAGATGTTGAATA 59.479 37.500 0.00 0.00 0.00 1.75
156 157 3.320541 TGGCCACGAAAAAGATGTTGAAT 59.679 39.130 0.00 0.00 0.00 2.57
157 158 2.690497 TGGCCACGAAAAAGATGTTGAA 59.310 40.909 0.00 0.00 0.00 2.69
158 159 2.293122 CTGGCCACGAAAAAGATGTTGA 59.707 45.455 0.00 0.00 0.00 3.18
159 160 2.607771 CCTGGCCACGAAAAAGATGTTG 60.608 50.000 0.00 0.00 0.00 3.33
160 161 1.613437 CCTGGCCACGAAAAAGATGTT 59.387 47.619 0.00 0.00 0.00 2.71
161 162 1.202879 TCCTGGCCACGAAAAAGATGT 60.203 47.619 0.00 0.00 0.00 3.06
162 163 1.533625 TCCTGGCCACGAAAAAGATG 58.466 50.000 0.00 0.00 0.00 2.90
163 164 2.286365 TTCCTGGCCACGAAAAAGAT 57.714 45.000 13.98 0.00 0.00 2.40
164 165 2.286365 ATTCCTGGCCACGAAAAAGA 57.714 45.000 19.21 0.00 0.00 2.52
165 166 4.513198 TTAATTCCTGGCCACGAAAAAG 57.487 40.909 19.21 0.00 0.00 2.27
166 167 4.815269 CATTAATTCCTGGCCACGAAAAA 58.185 39.130 19.21 16.18 0.00 1.94
167 168 3.367910 GCATTAATTCCTGGCCACGAAAA 60.368 43.478 19.21 11.49 0.00 2.29
168 169 2.165437 GCATTAATTCCTGGCCACGAAA 59.835 45.455 19.21 6.70 0.00 3.46
169 170 1.748493 GCATTAATTCCTGGCCACGAA 59.252 47.619 17.90 17.90 0.00 3.85
170 171 1.340502 TGCATTAATTCCTGGCCACGA 60.341 47.619 0.00 0.00 0.00 4.35
171 172 1.102154 TGCATTAATTCCTGGCCACG 58.898 50.000 0.00 0.00 0.00 4.94
172 173 1.136891 GGTGCATTAATTCCTGGCCAC 59.863 52.381 0.00 0.00 0.00 5.01
173 174 1.272928 TGGTGCATTAATTCCTGGCCA 60.273 47.619 4.71 4.71 0.00 5.36
174 175 1.136891 GTGGTGCATTAATTCCTGGCC 59.863 52.381 0.00 0.00 0.00 5.36
175 176 1.202290 CGTGGTGCATTAATTCCTGGC 60.202 52.381 0.00 0.00 0.00 4.85
176 177 1.405105 CCGTGGTGCATTAATTCCTGG 59.595 52.381 0.00 0.00 0.00 4.45
177 178 1.405105 CCCGTGGTGCATTAATTCCTG 59.595 52.381 0.00 0.00 0.00 3.86
178 179 1.762708 CCCGTGGTGCATTAATTCCT 58.237 50.000 0.00 0.00 0.00 3.36
179 180 0.102300 GCCCGTGGTGCATTAATTCC 59.898 55.000 0.00 0.00 0.00 3.01
180 181 0.102300 GGCCCGTGGTGCATTAATTC 59.898 55.000 0.00 0.00 0.00 2.17
181 182 0.613292 TGGCCCGTGGTGCATTAATT 60.613 50.000 0.00 0.00 0.00 1.40
182 183 0.613292 TTGGCCCGTGGTGCATTAAT 60.613 50.000 0.00 0.00 0.00 1.40
183 184 0.827925 TTTGGCCCGTGGTGCATTAA 60.828 50.000 0.00 0.00 0.00 1.40
184 185 0.613292 ATTTGGCCCGTGGTGCATTA 60.613 50.000 0.00 0.00 0.00 1.90
185 186 1.887344 GATTTGGCCCGTGGTGCATT 61.887 55.000 0.00 0.00 0.00 3.56
186 187 2.283821 ATTTGGCCCGTGGTGCAT 60.284 55.556 0.00 0.00 0.00 3.96
187 188 2.988684 GATTTGGCCCGTGGTGCA 60.989 61.111 0.00 0.00 0.00 4.57
188 189 0.963355 TAAGATTTGGCCCGTGGTGC 60.963 55.000 0.00 0.00 0.00 5.01
189 190 1.094785 CTAAGATTTGGCCCGTGGTG 58.905 55.000 0.00 0.00 0.00 4.17
190 191 0.679960 GCTAAGATTTGGCCCGTGGT 60.680 55.000 0.00 0.00 0.00 4.16
191 192 1.714899 CGCTAAGATTTGGCCCGTGG 61.715 60.000 0.00 0.00 33.01 4.94
192 193 1.024579 ACGCTAAGATTTGGCCCGTG 61.025 55.000 0.00 0.00 33.01 4.94
193 194 0.538118 TACGCTAAGATTTGGCCCGT 59.462 50.000 0.00 1.03 33.01 5.28
194 195 0.935196 GTACGCTAAGATTTGGCCCG 59.065 55.000 0.00 0.00 33.01 6.13
195 196 2.158943 AGAGTACGCTAAGATTTGGCCC 60.159 50.000 0.00 0.00 33.01 5.80
196 197 3.124560 GAGAGTACGCTAAGATTTGGCC 58.875 50.000 0.00 0.00 33.01 5.36
197 198 3.782046 TGAGAGTACGCTAAGATTTGGC 58.218 45.455 0.00 0.00 0.00 4.52
198 199 6.042777 TGATTGAGAGTACGCTAAGATTTGG 58.957 40.000 0.00 0.00 0.00 3.28
199 200 7.706281 ATGATTGAGAGTACGCTAAGATTTG 57.294 36.000 0.00 0.00 0.00 2.32
200 201 8.200792 AGAATGATTGAGAGTACGCTAAGATTT 58.799 33.333 0.00 0.00 0.00 2.17
201 202 7.721402 AGAATGATTGAGAGTACGCTAAGATT 58.279 34.615 0.00 0.00 0.00 2.40
202 203 7.283625 AGAATGATTGAGAGTACGCTAAGAT 57.716 36.000 0.00 0.00 0.00 2.40
203 204 6.701145 AGAATGATTGAGAGTACGCTAAGA 57.299 37.500 0.00 0.00 0.00 2.10
204 205 6.975197 TCAAGAATGATTGAGAGTACGCTAAG 59.025 38.462 0.00 0.00 34.31 2.18
205 206 6.752351 GTCAAGAATGATTGAGAGTACGCTAA 59.248 38.462 0.00 0.00 39.78 3.09
206 207 6.266323 GTCAAGAATGATTGAGAGTACGCTA 58.734 40.000 0.00 0.00 39.78 4.26
207 208 5.105752 GTCAAGAATGATTGAGAGTACGCT 58.894 41.667 0.00 0.00 39.78 5.07
208 209 4.027295 CGTCAAGAATGATTGAGAGTACGC 60.027 45.833 0.00 0.00 39.78 4.42
209 210 5.332707 TCGTCAAGAATGATTGAGAGTACG 58.667 41.667 0.00 0.00 39.78 3.67
210 211 6.419413 GGATCGTCAAGAATGATTGAGAGTAC 59.581 42.308 0.00 0.00 39.78 2.73
211 212 6.096846 TGGATCGTCAAGAATGATTGAGAGTA 59.903 38.462 0.00 0.00 39.78 2.59
212 213 5.105187 TGGATCGTCAAGAATGATTGAGAGT 60.105 40.000 0.00 0.00 39.78 3.24
213 214 5.354767 TGGATCGTCAAGAATGATTGAGAG 58.645 41.667 0.00 0.00 39.78 3.20
214 215 5.343307 TGGATCGTCAAGAATGATTGAGA 57.657 39.130 0.00 0.00 39.78 3.27
215 216 6.615264 ATTGGATCGTCAAGAATGATTGAG 57.385 37.500 0.00 0.00 39.78 3.02
216 217 6.825213 AGAATTGGATCGTCAAGAATGATTGA 59.175 34.615 0.00 0.00 38.01 2.57
217 218 7.024340 AGAATTGGATCGTCAAGAATGATTG 57.976 36.000 0.00 0.00 38.01 2.67
218 219 7.636150 AAGAATTGGATCGTCAAGAATGATT 57.364 32.000 0.00 0.00 38.01 2.57
219 220 7.121759 ACAAAGAATTGGATCGTCAAGAATGAT 59.878 33.333 0.00 0.00 41.01 2.45
220 221 6.430925 ACAAAGAATTGGATCGTCAAGAATGA 59.569 34.615 0.00 0.00 41.01 2.57
221 222 6.615088 ACAAAGAATTGGATCGTCAAGAATG 58.385 36.000 0.00 0.00 41.01 2.67
222 223 6.824305 ACAAAGAATTGGATCGTCAAGAAT 57.176 33.333 0.00 0.00 41.01 2.40
223 224 6.934645 AGTACAAAGAATTGGATCGTCAAGAA 59.065 34.615 0.00 0.00 41.01 2.52
224 225 6.464222 AGTACAAAGAATTGGATCGTCAAGA 58.536 36.000 0.00 0.00 41.01 3.02
225 226 6.727824 AGTACAAAGAATTGGATCGTCAAG 57.272 37.500 0.00 0.00 41.01 3.02
226 227 7.156000 TGTAGTACAAAGAATTGGATCGTCAA 58.844 34.615 0.00 0.00 41.01 3.18
227 228 6.693466 TGTAGTACAAAGAATTGGATCGTCA 58.307 36.000 0.00 0.00 41.01 4.35
228 229 7.772332 ATGTAGTACAAAGAATTGGATCGTC 57.228 36.000 7.16 0.00 41.01 4.20
229 230 8.561738 AAATGTAGTACAAAGAATTGGATCGT 57.438 30.769 7.16 0.00 41.01 3.73
230 231 8.664798 TGAAATGTAGTACAAAGAATTGGATCG 58.335 33.333 7.16 0.00 41.01 3.69
246 247 8.388103 GCGTACTAACAATGATTGAAATGTAGT 58.612 33.333 12.80 11.99 0.00 2.73
247 248 8.604035 AGCGTACTAACAATGATTGAAATGTAG 58.396 33.333 12.80 7.41 0.00 2.74
248 249 8.387354 CAGCGTACTAACAATGATTGAAATGTA 58.613 33.333 12.80 6.58 0.00 2.29
249 250 7.243487 CAGCGTACTAACAATGATTGAAATGT 58.757 34.615 12.80 7.46 0.00 2.71
250 251 6.195244 GCAGCGTACTAACAATGATTGAAATG 59.805 38.462 12.80 1.97 0.00 2.32
251 252 6.128035 TGCAGCGTACTAACAATGATTGAAAT 60.128 34.615 12.80 0.47 0.00 2.17
252 253 5.180304 TGCAGCGTACTAACAATGATTGAAA 59.820 36.000 12.80 0.00 0.00 2.69
253 254 4.693095 TGCAGCGTACTAACAATGATTGAA 59.307 37.500 12.80 0.00 0.00 2.69
254 255 4.249661 TGCAGCGTACTAACAATGATTGA 58.750 39.130 12.80 0.00 0.00 2.57
255 256 4.581493 CTGCAGCGTACTAACAATGATTG 58.419 43.478 0.00 3.16 0.00 2.67
256 257 3.063997 GCTGCAGCGTACTAACAATGATT 59.936 43.478 25.23 0.00 0.00 2.57
257 258 2.609459 GCTGCAGCGTACTAACAATGAT 59.391 45.455 25.23 0.00 0.00 2.45
258 259 1.999735 GCTGCAGCGTACTAACAATGA 59.000 47.619 25.23 0.00 0.00 2.57
259 260 2.442189 GCTGCAGCGTACTAACAATG 57.558 50.000 25.23 0.00 0.00 2.82
277 278 4.120792 AGTTAAAACCCTAGCTAGTCGC 57.879 45.455 19.31 1.52 39.57 5.19
285 286 3.939592 GCCTGTGCTAGTTAAAACCCTAG 59.060 47.826 0.00 0.00 34.95 3.02
286 287 3.328343 TGCCTGTGCTAGTTAAAACCCTA 59.672 43.478 0.00 0.00 38.71 3.53
287 288 2.107552 TGCCTGTGCTAGTTAAAACCCT 59.892 45.455 0.00 0.00 38.71 4.34
288 289 2.228103 GTGCCTGTGCTAGTTAAAACCC 59.772 50.000 0.00 0.00 38.71 4.11
289 290 3.146847 AGTGCCTGTGCTAGTTAAAACC 58.853 45.455 0.00 0.00 38.71 3.27
290 291 4.065789 AGAGTGCCTGTGCTAGTTAAAAC 58.934 43.478 0.00 0.00 38.71 2.43
291 292 4.351874 AGAGTGCCTGTGCTAGTTAAAA 57.648 40.909 0.00 0.00 38.71 1.52
292 293 4.315803 GAAGAGTGCCTGTGCTAGTTAAA 58.684 43.478 0.00 0.00 38.71 1.52
293 294 3.306780 GGAAGAGTGCCTGTGCTAGTTAA 60.307 47.826 0.00 0.00 38.71 2.01
294 295 2.233922 GGAAGAGTGCCTGTGCTAGTTA 59.766 50.000 0.00 0.00 38.71 2.24
295 296 1.002544 GGAAGAGTGCCTGTGCTAGTT 59.997 52.381 0.00 0.00 38.71 2.24
296 297 0.610687 GGAAGAGTGCCTGTGCTAGT 59.389 55.000 0.00 0.00 38.71 2.57
297 298 0.610174 TGGAAGAGTGCCTGTGCTAG 59.390 55.000 0.00 0.00 38.71 3.42
298 299 0.321671 GTGGAAGAGTGCCTGTGCTA 59.678 55.000 0.00 0.00 38.71 3.49
299 300 1.072159 GTGGAAGAGTGCCTGTGCT 59.928 57.895 0.00 0.00 38.71 4.40
300 301 0.607489 ATGTGGAAGAGTGCCTGTGC 60.607 55.000 0.00 0.00 38.26 4.57
301 302 1.901591 AATGTGGAAGAGTGCCTGTG 58.098 50.000 0.00 0.00 0.00 3.66
302 303 2.624838 CAAAATGTGGAAGAGTGCCTGT 59.375 45.455 0.00 0.00 0.00 4.00
303 304 2.608752 GCAAAATGTGGAAGAGTGCCTG 60.609 50.000 0.00 0.00 0.00 4.85
304 305 1.615392 GCAAAATGTGGAAGAGTGCCT 59.385 47.619 0.00 0.00 0.00 4.75
305 306 1.340889 TGCAAAATGTGGAAGAGTGCC 59.659 47.619 0.00 0.00 0.00 5.01
306 307 2.397549 GTGCAAAATGTGGAAGAGTGC 58.602 47.619 0.00 0.00 0.00 4.40
307 308 2.653890 CGTGCAAAATGTGGAAGAGTG 58.346 47.619 0.00 0.00 0.00 3.51
308 309 1.001378 GCGTGCAAAATGTGGAAGAGT 60.001 47.619 0.00 0.00 0.00 3.24
309 310 1.689959 GCGTGCAAAATGTGGAAGAG 58.310 50.000 0.00 0.00 0.00 2.85
310 311 0.040514 CGCGTGCAAAATGTGGAAGA 60.041 50.000 0.00 0.00 0.00 2.87
311 312 1.608093 GCGCGTGCAAAATGTGGAAG 61.608 55.000 17.66 0.00 42.15 3.46
312 313 1.659954 GCGCGTGCAAAATGTGGAA 60.660 52.632 17.66 0.00 42.15 3.53
313 314 2.050533 GCGCGTGCAAAATGTGGA 60.051 55.556 17.66 0.00 42.15 4.02
314 315 3.460278 CGCGCGTGCAAAATGTGG 61.460 61.111 24.19 0.00 42.97 4.17
315 316 4.107168 GCGCGCGTGCAAAATGTG 62.107 61.111 37.29 3.42 42.97 3.21
316 317 4.620797 TGCGCGCGTGCAAAATGT 62.621 55.556 41.72 0.00 43.02 2.71
331 332 1.012234 GTAGCATACGCGCTTGTGC 60.012 57.895 24.80 24.80 45.49 4.57
341 342 1.186623 GCGTTTAGCGACGTAGCATAC 59.813 52.381 22.79 14.79 44.50 2.39
342 343 1.469917 GCGTTTAGCGACGTAGCATA 58.530 50.000 22.79 9.22 44.50 3.14
343 344 2.285154 GCGTTTAGCGACGTAGCAT 58.715 52.632 22.79 10.18 44.50 3.79
344 345 3.758035 GCGTTTAGCGACGTAGCA 58.242 55.556 22.79 6.09 44.50 3.49
354 355 2.554272 GTGGGCGTGTGCGTTTAG 59.446 61.111 0.00 0.00 44.10 1.85
355 356 3.339464 CGTGGGCGTGTGCGTTTA 61.339 61.111 0.00 0.00 44.10 2.01
366 367 1.352156 CTTGAAGAGTACGCGTGGGC 61.352 60.000 24.59 12.09 0.00 5.36
367 368 0.736325 CCTTGAAGAGTACGCGTGGG 60.736 60.000 24.59 5.90 0.00 4.61
368 369 0.038526 ACCTTGAAGAGTACGCGTGG 60.039 55.000 24.59 13.64 0.00 4.94
369 370 1.779569 AACCTTGAAGAGTACGCGTG 58.220 50.000 24.59 2.76 0.00 5.34
370 371 3.243501 TGTTAACCTTGAAGAGTACGCGT 60.244 43.478 19.17 19.17 0.00 6.01
371 372 3.311106 TGTTAACCTTGAAGAGTACGCG 58.689 45.455 3.53 3.53 0.00 6.01
372 373 3.123116 GCTGTTAACCTTGAAGAGTACGC 59.877 47.826 2.48 0.00 0.00 4.42
373 374 4.150098 GTGCTGTTAACCTTGAAGAGTACG 59.850 45.833 2.48 0.00 0.00 3.67
374 375 4.451435 GGTGCTGTTAACCTTGAAGAGTAC 59.549 45.833 2.48 1.69 33.75 2.73
375 376 4.638304 GGTGCTGTTAACCTTGAAGAGTA 58.362 43.478 2.48 0.00 34.66 2.59
376 377 3.477530 GGTGCTGTTAACCTTGAAGAGT 58.522 45.455 2.48 0.00 34.66 3.24
377 378 2.480419 CGGTGCTGTTAACCTTGAAGAG 59.520 50.000 2.48 0.00 35.39 2.85
378 379 2.489971 CGGTGCTGTTAACCTTGAAGA 58.510 47.619 2.48 0.00 35.39 2.87
379 380 1.069227 GCGGTGCTGTTAACCTTGAAG 60.069 52.381 2.48 0.00 35.39 3.02
380 381 0.948678 GCGGTGCTGTTAACCTTGAA 59.051 50.000 2.48 0.00 35.39 2.69
381 382 0.887387 GGCGGTGCTGTTAACCTTGA 60.887 55.000 2.48 0.00 35.39 3.02
382 383 1.169661 TGGCGGTGCTGTTAACCTTG 61.170 55.000 2.48 0.00 35.39 3.61
383 384 0.889186 CTGGCGGTGCTGTTAACCTT 60.889 55.000 2.48 0.00 35.39 3.50
384 385 1.302511 CTGGCGGTGCTGTTAACCT 60.303 57.895 2.48 0.00 35.39 3.50
385 386 2.978018 GCTGGCGGTGCTGTTAACC 61.978 63.158 2.48 0.00 0.00 2.85
386 387 2.187599 CTGCTGGCGGTGCTGTTAAC 62.188 60.000 0.00 0.00 0.00 2.01
387 388 1.965930 CTGCTGGCGGTGCTGTTAA 60.966 57.895 0.00 0.00 0.00 2.01
388 389 2.358615 CTGCTGGCGGTGCTGTTA 60.359 61.111 0.00 0.00 0.00 2.41
398 399 4.785453 ACGCCCTTAGCTGCTGGC 62.785 66.667 17.03 17.03 40.39 4.85
399 400 2.821366 CACGCCCTTAGCTGCTGG 60.821 66.667 13.43 6.26 40.39 4.85
400 401 1.237285 AAACACGCCCTTAGCTGCTG 61.237 55.000 13.43 0.00 40.39 4.41
401 402 1.073199 AAACACGCCCTTAGCTGCT 59.927 52.632 7.57 7.57 40.39 4.24
402 403 1.210155 CAAACACGCCCTTAGCTGC 59.790 57.895 0.00 0.00 40.39 5.25
403 404 0.889186 ACCAAACACGCCCTTAGCTG 60.889 55.000 0.00 0.00 40.39 4.24
404 405 0.179001 AACCAAACACGCCCTTAGCT 60.179 50.000 0.00 0.00 40.39 3.32
405 406 0.039527 CAACCAAACACGCCCTTAGC 60.040 55.000 0.00 0.00 38.52 3.09
460 461 0.752658 GCAACCAAACAGGCCTCTTT 59.247 50.000 0.00 0.00 43.14 2.52
461 462 1.115326 GGCAACCAAACAGGCCTCTT 61.115 55.000 0.00 0.00 43.09 2.85
481 482 1.273041 ACAGGCCCAATAGGAAAACCC 60.273 52.381 0.00 0.00 38.24 4.11
527 528 1.610886 GGTTTCCAGCGAGTTAGGCTT 60.611 52.381 0.00 0.00 39.08 4.35
533 534 1.004918 CGAGGGTTTCCAGCGAGTT 60.005 57.895 0.00 0.00 35.89 3.01
717 728 2.093606 GGTGGTGAGGTAGTAGGAAAGC 60.094 54.545 0.00 0.00 0.00 3.51
1111 1138 2.332063 AACAATGGACCATAGCGGAG 57.668 50.000 7.59 0.00 38.63 4.63
1237 1264 1.110442 CTGCTCCTGAAGGTCTCGAT 58.890 55.000 0.00 0.00 36.34 3.59
1290 1317 0.322975 ACATCGCCACTTGCTCTTCT 59.677 50.000 0.00 0.00 38.05 2.85
1305 1333 2.094545 GCCAACAACATGGAGGAACATC 60.095 50.000 0.00 0.00 43.54 3.06
1368 1396 3.964031 ACCTAGAGATGGTCTCCATTGAC 59.036 47.826 2.71 0.00 45.26 3.18
1628 1658 0.107945 CCTAGGAACTCTGGCAGTGC 60.108 60.000 15.27 6.55 41.75 4.40
1657 1687 0.988145 TTCCTCCCCCTGTATGCTGG 60.988 60.000 0.00 0.00 0.00 4.85
1859 1889 0.179092 GGGTGGAAGAATACCCGACG 60.179 60.000 0.00 0.00 46.42 5.12
2050 2080 3.515901 AGAACTAGCTTAACCTGAGTGGG 59.484 47.826 0.00 0.00 41.11 4.61
2163 2193 3.650950 ACACCATGGCCGGAGCTT 61.651 61.111 13.04 0.00 39.73 3.74
2272 2302 7.469181 GCTTCTTGTTCTTCTTCCATCTTCAAA 60.469 37.037 0.00 0.00 0.00 2.69
2273 2303 6.016777 GCTTCTTGTTCTTCTTCCATCTTCAA 60.017 38.462 0.00 0.00 0.00 2.69
2274 2304 5.471456 GCTTCTTGTTCTTCTTCCATCTTCA 59.529 40.000 0.00 0.00 0.00 3.02
2329 2395 3.970842 TGTCCTCTCCTCTTCTTCTACC 58.029 50.000 0.00 0.00 0.00 3.18
2349 2427 2.739932 CGGTGCTACCAGATCTTCCTTG 60.740 54.545 0.00 0.00 38.47 3.61
2350 2428 1.482593 CGGTGCTACCAGATCTTCCTT 59.517 52.381 0.00 0.00 38.47 3.36
2441 2531 7.230510 AGCACCATCTACTTAAACAAATGACAA 59.769 33.333 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.