Multiple sequence alignment - TraesCS3D01G444500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G444500 chr3D 100.000 2348 0 0 1 2348 553680729 553678382 0.000000e+00 4337
1 TraesCS3D01G444500 chr3D 96.269 134 5 0 2215 2348 594991914 594991781 1.090000e-53 220
2 TraesCS3D01G444500 chr3B 89.719 1673 87 43 1 1633 734687667 734686040 0.000000e+00 2058
3 TraesCS3D01G444500 chr3B 91.509 318 25 1 1902 2217 734671231 734670914 9.960000e-119 436
4 TraesCS3D01G444500 chr3B 92.549 255 15 1 1671 1925 734685948 734685698 1.720000e-96 363
5 TraesCS3D01G444500 chr3A 90.150 1604 87 24 646 2217 690080483 690078919 0.000000e+00 2021
6 TraesCS3D01G444500 chr3A 90.762 617 31 13 39 640 690081248 690080643 0.000000e+00 800
7 TraesCS3D01G444500 chr5D 96.241 133 5 0 2216 2348 564934565 564934697 3.930000e-53 219
8 TraesCS3D01G444500 chr5D 93.706 143 7 2 2208 2348 550572669 550572527 1.830000e-51 213
9 TraesCS3D01G444500 chr7D 95.522 134 6 0 2215 2348 46060725 46060858 5.080000e-52 215
10 TraesCS3D01G444500 chr6D 95.522 134 6 0 2215 2348 22320678 22320811 5.080000e-52 215
11 TraesCS3D01G444500 chr1D 95.522 134 6 0 2215 2348 494325153 494325020 5.080000e-52 215
12 TraesCS3D01G444500 chr2D 94.245 139 8 0 2210 2348 579562186 579562324 1.830000e-51 213
13 TraesCS3D01G444500 chr2D 93.662 142 7 2 2209 2348 573895245 573895104 6.570000e-51 211
14 TraesCS3D01G444500 chr2D 94.815 135 6 1 2211 2345 624125898 624126031 2.360000e-50 209
15 TraesCS3D01G444500 chr2D 81.538 130 21 3 1205 1332 63703428 63703300 1.150000e-18 104
16 TraesCS3D01G444500 chr2B 81.538 130 21 3 1205 1332 99773236 99773108 1.150000e-18 104
17 TraesCS3D01G444500 chr2A 80.769 130 22 3 1205 1332 65395919 65395791 5.340000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G444500 chr3D 553678382 553680729 2347 True 4337.0 4337 100.000 1 2348 1 chr3D.!!$R1 2347
1 TraesCS3D01G444500 chr3B 734685698 734687667 1969 True 1210.5 2058 91.134 1 1925 2 chr3B.!!$R2 1924
2 TraesCS3D01G444500 chr3A 690078919 690081248 2329 True 1410.5 2021 90.456 39 2217 2 chr3A.!!$R1 2178

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 1090 0.041839 GACACACAAGCACAAGAGCG 60.042 55.0 0.0 0.0 40.15 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2089 2387 0.033504 ACGATGTTCAAGCTGTCCGT 59.966 50.0 0.0 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.378564 GCTGTATACATCTAGAAGCCCAGATA 59.621 42.308 5.91 0.00 30.32 1.98
111 114 3.118920 TGTCGCCCAGATCGATTTCTTAA 60.119 43.478 0.00 0.00 38.29 1.85
256 260 3.574614 GCCATGTTACCATGTTGTTGTC 58.425 45.455 0.00 0.00 45.83 3.18
357 373 5.049680 CCACACACAGGTTTTGTAGTACATC 60.050 44.000 3.28 0.00 38.16 3.06
383 400 4.554723 GCACAGTAACTTAACAAGCCACTG 60.555 45.833 14.30 14.30 43.68 3.66
386 403 1.675552 AACTTAACAAGCCACTGCGT 58.324 45.000 0.00 0.00 44.33 5.24
387 404 2.536761 ACTTAACAAGCCACTGCGTA 57.463 45.000 0.00 0.00 44.33 4.42
388 405 2.413837 ACTTAACAAGCCACTGCGTAG 58.586 47.619 0.00 0.00 44.33 3.51
389 406 2.036733 ACTTAACAAGCCACTGCGTAGA 59.963 45.455 7.78 0.00 44.33 2.59
390 407 2.823924 TAACAAGCCACTGCGTAGAA 57.176 45.000 7.78 0.00 44.33 2.10
391 408 1.961793 AACAAGCCACTGCGTAGAAA 58.038 45.000 7.78 0.00 44.33 2.52
392 409 1.226746 ACAAGCCACTGCGTAGAAAC 58.773 50.000 7.78 0.00 44.33 2.78
450 468 3.194005 TCGAGGCAAAGAAAAGTCAGT 57.806 42.857 0.00 0.00 0.00 3.41
451 469 2.872245 TCGAGGCAAAGAAAAGTCAGTG 59.128 45.455 0.00 0.00 0.00 3.66
517 549 3.338249 ACACACATCTTGTACTGCCATC 58.662 45.455 0.00 0.00 35.67 3.51
520 552 3.008375 ACACATCTTGTACTGCCATCTGT 59.992 43.478 0.00 0.00 36.32 3.41
570 602 1.405797 CCGGACGCCCTAATTAACACA 60.406 52.381 0.00 0.00 0.00 3.72
606 638 0.589223 CCGTTTGCTTCGCTTACCAA 59.411 50.000 0.00 0.00 0.00 3.67
607 639 1.002251 CCGTTTGCTTCGCTTACCAAA 60.002 47.619 0.00 0.00 0.00 3.28
609 641 3.120130 CCGTTTGCTTCGCTTACCAAATA 60.120 43.478 0.00 0.00 30.89 1.40
610 642 4.438200 CCGTTTGCTTCGCTTACCAAATAT 60.438 41.667 0.00 0.00 30.89 1.28
640 672 0.598562 TCAGTCCTCTTCGTGTCAGC 59.401 55.000 0.00 0.00 0.00 4.26
643 675 1.412710 AGTCCTCTTCGTGTCAGCAAA 59.587 47.619 0.00 0.00 0.00 3.68
663 849 5.809464 CAAAATGAGGGTTTGCTTGTTTTC 58.191 37.500 0.00 0.00 0.00 2.29
666 852 6.418057 AATGAGGGTTTGCTTGTTTTCATA 57.582 33.333 0.00 0.00 0.00 2.15
670 856 7.278875 TGAGGGTTTGCTTGTTTTCATATTTT 58.721 30.769 0.00 0.00 0.00 1.82
671 857 7.772757 TGAGGGTTTGCTTGTTTTCATATTTTT 59.227 29.630 0.00 0.00 0.00 1.94
726 914 6.500684 AATGTGTAGTAGTGCAAGGATTTG 57.499 37.500 0.00 0.00 37.36 2.32
733 921 2.242043 AGTGCAAGGATTTGAGGTTGG 58.758 47.619 0.00 0.00 36.36 3.77
755 943 0.736325 AGTCAGTCATTGCCGCGTAC 60.736 55.000 4.92 0.00 0.00 3.67
759 949 0.458543 AGTCATTGCCGCGTACTGAG 60.459 55.000 4.92 0.00 0.00 3.35
766 956 0.457853 GCCGCGTACTGAGTGATTCA 60.458 55.000 4.92 0.00 0.00 2.57
888 1090 0.041839 GACACACAAGCACAAGAGCG 60.042 55.000 0.00 0.00 40.15 5.03
903 1105 2.434884 GCGAAGGCAGCAGCACTA 60.435 61.111 2.65 0.00 44.61 2.74
911 1113 1.442769 GCAGCAGCACTACAGCTTTA 58.557 50.000 0.00 0.00 43.70 1.85
913 1115 2.416747 CAGCAGCACTACAGCTTTACA 58.583 47.619 0.00 0.00 43.70 2.41
1314 1535 3.007323 GCCAACCCCTACTCCCGT 61.007 66.667 0.00 0.00 0.00 5.28
1344 1565 2.685017 ATCACCCGCTGCAGAGGA 60.685 61.111 35.07 17.84 37.14 3.71
1352 1575 0.313672 CGCTGCAGAGGATAGAGACC 59.686 60.000 20.43 0.00 0.00 3.85
1357 1580 1.323412 CAGAGGATAGAGACCCACGG 58.677 60.000 0.00 0.00 0.00 4.94
1466 1702 7.880195 TCGATTGATTTTCTCTTCTTCTTCCTT 59.120 33.333 0.00 0.00 0.00 3.36
1495 1732 2.223711 CGGTTCTTGTTTGGGGTTTCAG 60.224 50.000 0.00 0.00 0.00 3.02
1501 1738 4.998672 TCTTGTTTGGGGTTTCAGTATACG 59.001 41.667 0.00 0.00 0.00 3.06
1545 1782 2.146920 TGAGCAAATCATCCATGGCA 57.853 45.000 6.96 0.00 31.12 4.92
1548 1785 2.429610 GAGCAAATCATCCATGGCAACT 59.570 45.455 6.96 0.00 37.61 3.16
1555 1793 4.782019 TCATCCATGGCAACTTTTGTAC 57.218 40.909 6.96 0.00 37.61 2.90
1576 1814 0.463654 TGGAGGCAATGTACCGATGC 60.464 55.000 6.18 6.18 39.33 3.91
1637 1875 5.726397 TGTACTGTGCGATTGGTAAATAGT 58.274 37.500 0.00 0.00 0.00 2.12
1638 1876 6.865411 TGTACTGTGCGATTGGTAAATAGTA 58.135 36.000 0.00 0.00 0.00 1.82
1639 1877 6.753279 TGTACTGTGCGATTGGTAAATAGTAC 59.247 38.462 0.00 0.00 35.37 2.73
1640 1878 5.114081 ACTGTGCGATTGGTAAATAGTACC 58.886 41.667 0.00 0.00 34.59 3.34
1675 1973 4.153475 CCACGGTGTTTTAATCGAGTTCAT 59.847 41.667 7.45 0.00 0.00 2.57
1703 2001 1.337817 GACTGTCTGTAGCGTGCGTG 61.338 60.000 0.00 0.00 0.00 5.34
1744 2042 0.906775 TAAATCCGTGGTCCTGTCCC 59.093 55.000 0.00 0.00 0.00 4.46
1778 2076 0.103208 GCACTACTCCTGGACGGATG 59.897 60.000 0.00 0.00 42.12 3.51
1779 2077 0.747255 CACTACTCCTGGACGGATGG 59.253 60.000 0.00 0.00 42.12 3.51
1826 2124 8.704849 TGCCACTTGCCAGTATAATTTATTAT 57.295 30.769 0.00 1.06 40.16 1.28
1860 2158 0.387494 TGCATTGCACATGAAGCGTG 60.387 50.000 7.38 7.59 37.43 5.34
1966 2264 2.036862 CAGATGCAGCCAGAGTAGCATA 59.963 50.000 0.00 0.00 46.71 3.14
2001 2299 2.811873 GCCGGCTAGTTGATGATGGATT 60.812 50.000 22.15 0.00 0.00 3.01
2042 2340 2.176546 CAAGTTGTCATGCCGCCG 59.823 61.111 0.00 0.00 0.00 6.46
2061 2359 0.807496 GCCTCAGAACATCTGCAACC 59.193 55.000 2.48 0.00 43.95 3.77
2070 2368 3.286694 ATCTGCAACCGCACCCCAT 62.287 57.895 0.00 0.00 45.36 4.00
2073 2371 2.098426 CTGCAACCGCACCCCATTTT 62.098 55.000 0.00 0.00 45.36 1.82
2079 2377 2.350458 CGCACCCCATTTTCCCCTG 61.350 63.158 0.00 0.00 0.00 4.45
2087 2385 0.322456 CATTTTCCCCTGGACGCTCA 60.322 55.000 0.00 0.00 0.00 4.26
2088 2386 0.322546 ATTTTCCCCTGGACGCTCAC 60.323 55.000 0.00 0.00 0.00 3.51
2089 2387 1.701031 TTTTCCCCTGGACGCTCACA 61.701 55.000 0.00 0.00 0.00 3.58
2090 2388 2.391724 TTTCCCCTGGACGCTCACAC 62.392 60.000 0.00 0.00 0.00 3.82
2091 2389 4.742201 CCCCTGGACGCTCACACG 62.742 72.222 0.00 0.00 39.50 4.49
2092 2390 4.742201 CCCTGGACGCTCACACGG 62.742 72.222 0.00 0.00 37.37 4.94
2093 2391 3.680786 CCTGGACGCTCACACGGA 61.681 66.667 0.00 0.00 37.37 4.69
2094 2392 2.430921 CTGGACGCTCACACGGAC 60.431 66.667 0.00 0.00 37.37 4.79
2095 2393 3.207547 CTGGACGCTCACACGGACA 62.208 63.158 0.00 0.00 37.37 4.02
2096 2394 2.430921 GGACGCTCACACGGACAG 60.431 66.667 0.00 0.00 37.37 3.51
2097 2395 3.106407 GACGCTCACACGGACAGC 61.106 66.667 0.00 0.00 37.37 4.40
2098 2396 3.559657 GACGCTCACACGGACAGCT 62.560 63.158 0.00 0.00 37.37 4.24
2099 2397 2.356313 CGCTCACACGGACAGCTT 60.356 61.111 0.00 0.00 0.00 3.74
2100 2398 2.661566 CGCTCACACGGACAGCTTG 61.662 63.158 0.00 0.00 0.00 4.01
2101 2399 1.300931 GCTCACACGGACAGCTTGA 60.301 57.895 0.00 0.00 0.00 3.02
2127 2425 6.151648 ACATCGTCTGAATCCAAAAACATCAT 59.848 34.615 0.00 0.00 0.00 2.45
2137 2435 3.328505 CAAAAACATCATCCAACAGCCC 58.671 45.455 0.00 0.00 0.00 5.19
2169 2467 0.179045 GATATGTGGCCGCTTGGACT 60.179 55.000 18.96 0.00 43.51 3.85
2173 2471 4.329545 TGGCCGCTTGGACTCACC 62.330 66.667 0.00 0.00 43.51 4.02
2177 2475 4.760047 CGCTTGGACTCACCCGGG 62.760 72.222 22.25 22.25 38.00 5.73
2180 2478 3.901797 CTTGGACTCACCCGGGCAC 62.902 68.421 24.08 7.44 38.00 5.01
2217 2517 0.108615 CCCATCTCGACCTCACACAC 60.109 60.000 0.00 0.00 0.00 3.82
2218 2518 0.891373 CCATCTCGACCTCACACACT 59.109 55.000 0.00 0.00 0.00 3.55
2219 2519 2.092323 CCATCTCGACCTCACACACTA 58.908 52.381 0.00 0.00 0.00 2.74
2220 2520 2.098280 CCATCTCGACCTCACACACTAG 59.902 54.545 0.00 0.00 0.00 2.57
2221 2521 2.563261 TCTCGACCTCACACACTAGT 57.437 50.000 0.00 0.00 0.00 2.57
2222 2522 3.690475 TCTCGACCTCACACACTAGTA 57.310 47.619 0.00 0.00 0.00 1.82
2223 2523 3.597255 TCTCGACCTCACACACTAGTAG 58.403 50.000 0.00 0.00 0.00 2.57
2224 2524 3.260128 TCTCGACCTCACACACTAGTAGA 59.740 47.826 3.59 0.00 0.00 2.59
2225 2525 4.001652 CTCGACCTCACACACTAGTAGAA 58.998 47.826 3.59 0.00 0.00 2.10
2226 2526 4.392047 TCGACCTCACACACTAGTAGAAA 58.608 43.478 3.59 0.00 0.00 2.52
2227 2527 4.823442 TCGACCTCACACACTAGTAGAAAA 59.177 41.667 3.59 0.00 0.00 2.29
2228 2528 5.300034 TCGACCTCACACACTAGTAGAAAAA 59.700 40.000 3.59 0.00 0.00 1.94
2229 2529 5.629849 CGACCTCACACACTAGTAGAAAAAG 59.370 44.000 3.59 0.00 0.00 2.27
2230 2530 5.855045 ACCTCACACACTAGTAGAAAAAGG 58.145 41.667 3.59 1.59 0.00 3.11
2231 2531 4.691216 CCTCACACACTAGTAGAAAAAGGC 59.309 45.833 3.59 0.00 0.00 4.35
2232 2532 4.638304 TCACACACTAGTAGAAAAAGGCC 58.362 43.478 3.59 0.00 0.00 5.19
2233 2533 3.751698 CACACACTAGTAGAAAAAGGCCC 59.248 47.826 3.59 0.00 0.00 5.80
2234 2534 3.393278 ACACACTAGTAGAAAAAGGCCCA 59.607 43.478 3.59 0.00 0.00 5.36
2235 2535 4.042934 ACACACTAGTAGAAAAAGGCCCAT 59.957 41.667 3.59 0.00 0.00 4.00
2236 2536 4.636206 CACACTAGTAGAAAAAGGCCCATC 59.364 45.833 3.59 0.00 0.00 3.51
2237 2537 4.536489 ACACTAGTAGAAAAAGGCCCATCT 59.464 41.667 3.59 0.17 0.00 2.90
2238 2538 4.878397 CACTAGTAGAAAAAGGCCCATCTG 59.122 45.833 3.59 0.00 0.00 2.90
2239 2539 4.536489 ACTAGTAGAAAAAGGCCCATCTGT 59.464 41.667 3.59 0.00 0.00 3.41
2240 2540 3.956744 AGTAGAAAAAGGCCCATCTGTC 58.043 45.455 0.00 0.00 0.00 3.51
2241 2541 2.222227 AGAAAAAGGCCCATCTGTCC 57.778 50.000 0.00 0.00 0.00 4.02
2242 2542 1.186200 GAAAAAGGCCCATCTGTCCC 58.814 55.000 0.00 0.00 0.00 4.46
2243 2543 0.611896 AAAAAGGCCCATCTGTCCCG 60.612 55.000 0.00 0.00 0.00 5.14
2244 2544 2.499303 AAAAGGCCCATCTGTCCCGG 62.499 60.000 0.00 0.00 0.00 5.73
2245 2545 4.741239 AGGCCCATCTGTCCCGGT 62.741 66.667 0.00 0.00 0.00 5.28
2246 2546 2.766651 GGCCCATCTGTCCCGGTA 60.767 66.667 0.00 0.00 0.00 4.02
2247 2547 2.147387 GGCCCATCTGTCCCGGTAT 61.147 63.158 0.00 0.00 0.00 2.73
2248 2548 0.834687 GGCCCATCTGTCCCGGTATA 60.835 60.000 0.00 0.00 0.00 1.47
2249 2549 1.276622 GCCCATCTGTCCCGGTATAT 58.723 55.000 0.00 0.00 0.00 0.86
2250 2550 2.463752 GCCCATCTGTCCCGGTATATA 58.536 52.381 0.00 0.00 0.00 0.86
2251 2551 2.835764 GCCCATCTGTCCCGGTATATAA 59.164 50.000 0.00 0.00 0.00 0.98
2252 2552 3.118738 GCCCATCTGTCCCGGTATATAAG 60.119 52.174 0.00 0.00 0.00 1.73
2253 2553 4.350245 CCCATCTGTCCCGGTATATAAGA 58.650 47.826 0.00 0.00 0.00 2.10
2254 2554 4.159879 CCCATCTGTCCCGGTATATAAGAC 59.840 50.000 0.00 0.00 0.00 3.01
2255 2555 4.159879 CCATCTGTCCCGGTATATAAGACC 59.840 50.000 0.00 0.00 0.00 3.85
2256 2556 3.771216 TCTGTCCCGGTATATAAGACCC 58.229 50.000 0.00 0.00 32.95 4.46
2257 2557 3.140707 TCTGTCCCGGTATATAAGACCCA 59.859 47.826 0.00 0.00 32.95 4.51
2258 2558 4.094476 CTGTCCCGGTATATAAGACCCAT 58.906 47.826 0.00 0.00 32.95 4.00
2259 2559 4.091549 TGTCCCGGTATATAAGACCCATC 58.908 47.826 0.00 0.00 32.95 3.51
2260 2560 4.202749 TGTCCCGGTATATAAGACCCATCT 60.203 45.833 0.00 0.00 36.42 2.90
2261 2561 4.159879 GTCCCGGTATATAAGACCCATCTG 59.840 50.000 0.00 0.00 34.48 2.90
2262 2562 4.094476 CCCGGTATATAAGACCCATCTGT 58.906 47.826 0.00 0.00 34.48 3.41
2263 2563 4.159879 CCCGGTATATAAGACCCATCTGTC 59.840 50.000 0.00 0.00 34.48 3.51
2264 2564 4.159879 CCGGTATATAAGACCCATCTGTCC 59.840 50.000 0.00 0.00 34.48 4.02
2265 2565 4.159879 CGGTATATAAGACCCATCTGTCCC 59.840 50.000 2.41 0.00 34.48 4.46
2266 2566 4.159879 GGTATATAAGACCCATCTGTCCCG 59.840 50.000 0.00 0.00 34.48 5.14
2267 2567 1.424638 ATAAGACCCATCTGTCCCGG 58.575 55.000 0.00 0.00 34.48 5.73
2268 2568 0.042131 TAAGACCCATCTGTCCCGGT 59.958 55.000 0.00 0.00 34.48 5.28
2269 2569 0.840722 AAGACCCATCTGTCCCGGTT 60.841 55.000 0.00 0.00 34.48 4.44
2270 2570 1.078426 GACCCATCTGTCCCGGTTG 60.078 63.158 0.00 0.00 0.00 3.77
2271 2571 2.272146 CCCATCTGTCCCGGTTGG 59.728 66.667 0.00 0.00 31.38 3.77
2289 2589 1.605992 GGGAACCGGGACTAAAGGG 59.394 63.158 6.32 0.00 40.86 3.95
2290 2590 1.203441 GGGAACCGGGACTAAAGGGT 61.203 60.000 6.32 0.00 40.86 4.34
2291 2591 0.251354 GGAACCGGGACTAAAGGGTC 59.749 60.000 6.32 0.00 40.88 4.46
2292 2592 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
2293 2593 0.833409 AACCGGGACTAAAGGGTCGT 60.833 55.000 6.32 0.00 37.12 4.34
2294 2594 0.833409 ACCGGGACTAAAGGGTCGTT 60.833 55.000 6.32 0.00 37.12 3.85
2295 2595 1.185315 CCGGGACTAAAGGGTCGTTA 58.815 55.000 0.00 0.00 37.12 3.18
2296 2596 1.134995 CCGGGACTAAAGGGTCGTTAC 60.135 57.143 0.00 0.00 37.12 2.50
2297 2597 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
2298 2598 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
2299 2599 3.443681 CGGGACTAAAGGGTCGTTACTAA 59.556 47.826 0.00 0.00 37.12 2.24
2300 2600 4.098501 CGGGACTAAAGGGTCGTTACTAAT 59.901 45.833 0.00 0.00 37.12 1.73
2301 2601 5.354767 GGGACTAAAGGGTCGTTACTAATG 58.645 45.833 0.00 0.00 37.12 1.90
2302 2602 4.807834 GGACTAAAGGGTCGTTACTAATGC 59.192 45.833 0.00 0.00 37.12 3.56
2303 2603 4.763073 ACTAAAGGGTCGTTACTAATGCC 58.237 43.478 0.00 0.00 0.00 4.40
2304 2604 3.994931 AAAGGGTCGTTACTAATGCCT 57.005 42.857 0.00 0.00 0.00 4.75
2305 2605 5.658190 ACTAAAGGGTCGTTACTAATGCCTA 59.342 40.000 0.00 0.00 0.00 3.93
2306 2606 4.667519 AAGGGTCGTTACTAATGCCTAG 57.332 45.455 0.00 0.00 0.00 3.02
2307 2607 2.963782 AGGGTCGTTACTAATGCCTAGG 59.036 50.000 3.67 3.67 31.14 3.02
2308 2608 2.547430 GGGTCGTTACTAATGCCTAGGC 60.547 54.545 27.71 27.71 42.35 3.93
2309 2609 2.547430 GGTCGTTACTAATGCCTAGGCC 60.547 54.545 30.81 13.48 41.09 5.19
2310 2610 2.364647 GTCGTTACTAATGCCTAGGCCT 59.635 50.000 30.81 19.15 41.09 5.19
2311 2611 2.364324 TCGTTACTAATGCCTAGGCCTG 59.636 50.000 30.81 18.87 41.09 4.85
2312 2612 2.102588 CGTTACTAATGCCTAGGCCTGT 59.897 50.000 30.81 23.02 41.09 4.00
2313 2613 3.319972 CGTTACTAATGCCTAGGCCTGTA 59.680 47.826 30.81 22.07 41.09 2.74
2314 2614 4.558898 CGTTACTAATGCCTAGGCCTGTAG 60.559 50.000 30.81 26.58 41.09 2.74
2315 2615 3.047695 ACTAATGCCTAGGCCTGTAGT 57.952 47.619 30.81 27.17 41.09 2.73
2316 2616 2.966516 ACTAATGCCTAGGCCTGTAGTC 59.033 50.000 30.81 0.00 41.09 2.59
2317 2617 1.132500 AATGCCTAGGCCTGTAGTCC 58.868 55.000 30.81 0.44 41.09 3.85
2318 2618 0.764752 ATGCCTAGGCCTGTAGTCCC 60.765 60.000 30.81 0.00 41.09 4.46
2319 2619 2.499827 GCCTAGGCCTGTAGTCCCG 61.500 68.421 24.19 0.00 34.56 5.14
2320 2620 1.833049 CCTAGGCCTGTAGTCCCGG 60.833 68.421 17.99 0.00 0.00 5.73
2321 2621 1.076192 CTAGGCCTGTAGTCCCGGT 60.076 63.158 17.99 0.00 0.00 5.28
2322 2622 0.686769 CTAGGCCTGTAGTCCCGGTT 60.687 60.000 17.99 0.00 0.00 4.44
2323 2623 0.685458 TAGGCCTGTAGTCCCGGTTC 60.685 60.000 17.99 0.00 0.00 3.62
2324 2624 1.988406 GGCCTGTAGTCCCGGTTCT 60.988 63.158 0.00 0.15 0.00 3.01
2325 2625 1.551019 GGCCTGTAGTCCCGGTTCTT 61.551 60.000 0.00 0.00 0.00 2.52
2326 2626 1.188863 GCCTGTAGTCCCGGTTCTTA 58.811 55.000 0.00 0.00 0.00 2.10
2327 2627 1.761198 GCCTGTAGTCCCGGTTCTTAT 59.239 52.381 0.00 0.00 0.00 1.73
2328 2628 2.961062 GCCTGTAGTCCCGGTTCTTATA 59.039 50.000 0.00 0.00 0.00 0.98
2329 2629 3.243670 GCCTGTAGTCCCGGTTCTTATAC 60.244 52.174 0.00 0.00 0.00 1.47
2330 2630 4.213513 CCTGTAGTCCCGGTTCTTATACT 58.786 47.826 0.00 0.00 0.00 2.12
2331 2631 5.380043 CCTGTAGTCCCGGTTCTTATACTA 58.620 45.833 0.00 0.00 0.00 1.82
2332 2632 5.829924 CCTGTAGTCCCGGTTCTTATACTAA 59.170 44.000 0.00 0.00 0.00 2.24
2333 2633 6.238869 CCTGTAGTCCCGGTTCTTATACTAAC 60.239 46.154 0.00 0.00 0.00 2.34
2334 2634 5.594317 TGTAGTCCCGGTTCTTATACTAACC 59.406 44.000 0.00 5.63 41.48 2.85
2341 2641 4.941657 GGTTCTTATACTAACCGGGACAG 58.058 47.826 6.32 1.47 36.12 3.51
2342 2642 4.646492 GGTTCTTATACTAACCGGGACAGA 59.354 45.833 6.32 0.00 36.12 3.41
2343 2643 5.303845 GGTTCTTATACTAACCGGGACAGAT 59.696 44.000 6.32 0.00 36.12 2.90
2344 2644 6.214399 GTTCTTATACTAACCGGGACAGATG 58.786 44.000 6.32 0.00 0.00 2.90
2345 2645 4.831155 TCTTATACTAACCGGGACAGATGG 59.169 45.833 6.32 0.00 0.00 3.51
2346 2646 1.784358 TACTAACCGGGACAGATGGG 58.216 55.000 6.32 0.00 0.00 4.00
2347 2647 1.146263 CTAACCGGGACAGATGGGC 59.854 63.158 6.32 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.412843 TGCATGATGGGCAGATTCAATAT 58.587 39.130 0.00 0.00 36.11 1.28
256 260 1.630148 GACGACGATCTTGACCCTTG 58.370 55.000 0.00 0.00 0.00 3.61
357 373 2.095919 GCTTGTTAAGTTACTGTGCCCG 60.096 50.000 0.00 0.00 0.00 6.13
383 400 2.924290 CCTCACTTGCTAGTTTCTACGC 59.076 50.000 0.00 0.00 30.26 4.42
386 403 5.598830 CCCTATCCTCACTTGCTAGTTTCTA 59.401 44.000 0.00 0.00 30.26 2.10
387 404 4.407296 CCCTATCCTCACTTGCTAGTTTCT 59.593 45.833 0.00 0.00 30.26 2.52
388 405 4.162509 ACCCTATCCTCACTTGCTAGTTTC 59.837 45.833 0.00 0.00 30.26 2.78
389 406 4.104831 ACCCTATCCTCACTTGCTAGTTT 58.895 43.478 0.00 0.00 30.26 2.66
390 407 3.725634 ACCCTATCCTCACTTGCTAGTT 58.274 45.455 0.00 0.00 30.26 2.24
391 408 3.406512 ACCCTATCCTCACTTGCTAGT 57.593 47.619 0.00 0.00 34.00 2.57
392 409 3.964031 AGAACCCTATCCTCACTTGCTAG 59.036 47.826 0.00 0.00 0.00 3.42
450 468 1.937191 TCCACATGCTCTAGGACACA 58.063 50.000 0.00 0.00 0.00 3.72
451 469 2.544694 CGATCCACATGCTCTAGGACAC 60.545 54.545 0.00 0.00 32.04 3.67
517 549 7.116805 GGAAGAACATGCCAAATTTAAGAACAG 59.883 37.037 0.00 0.00 0.00 3.16
520 552 7.060383 TGGAAGAACATGCCAAATTTAAGAA 57.940 32.000 0.00 0.00 0.00 2.52
570 602 1.076485 GGTTGGCCAGATCCATGCT 60.076 57.895 5.11 0.00 35.77 3.79
606 638 7.205515 AGAGGACTGATGTCTTTTGGATATT 57.794 36.000 0.00 0.00 42.54 1.28
607 639 6.821616 AGAGGACTGATGTCTTTTGGATAT 57.178 37.500 0.00 0.00 42.54 1.63
609 641 5.495640 GAAGAGGACTGATGTCTTTTGGAT 58.504 41.667 0.00 0.00 42.54 3.41
610 642 4.561530 CGAAGAGGACTGATGTCTTTTGGA 60.562 45.833 0.00 0.00 42.54 3.53
640 672 5.353678 TGAAAACAAGCAAACCCTCATTTTG 59.646 36.000 0.00 0.00 37.07 2.44
643 675 4.751767 TGAAAACAAGCAAACCCTCATT 57.248 36.364 0.00 0.00 0.00 2.57
704 890 5.804639 TCAAATCCTTGCACTACTACACAT 58.195 37.500 0.00 0.00 32.14 3.21
726 914 3.057946 GCAATGACTGACTTTCCAACCTC 60.058 47.826 0.00 0.00 0.00 3.85
733 921 0.179215 CGCGGCAATGACTGACTTTC 60.179 55.000 0.00 0.00 0.00 2.62
759 949 1.134965 CGGAGAGGGAGTGTGAATCAC 60.135 57.143 6.41 6.41 46.46 3.06
766 956 1.482593 CTAAATGCGGAGAGGGAGTGT 59.517 52.381 0.00 0.00 0.00 3.55
847 1045 1.677552 GTGTGGGGTAGTGGACTGG 59.322 63.158 0.00 0.00 0.00 4.00
848 1046 1.292223 CGTGTGGGGTAGTGGACTG 59.708 63.158 0.00 0.00 0.00 3.51
849 1047 1.152398 ACGTGTGGGGTAGTGGACT 60.152 57.895 0.00 0.00 0.00 3.85
850 1048 1.291272 GACGTGTGGGGTAGTGGAC 59.709 63.158 0.00 0.00 0.00 4.02
851 1049 2.270257 CGACGTGTGGGGTAGTGGA 61.270 63.158 0.00 0.00 0.00 4.02
888 1090 1.642952 GCTGTAGTGCTGCTGCCTTC 61.643 60.000 13.47 8.13 38.75 3.46
903 1105 5.186021 AGCTATGACACTAGTGTAAAGCTGT 59.814 40.000 35.23 23.46 44.31 4.40
908 1110 6.511282 CGATCGAGCTATGACACTAGTGTAAA 60.511 42.308 27.98 19.25 45.05 2.01
913 1115 2.809119 CCGATCGAGCTATGACACTAGT 59.191 50.000 18.66 0.00 0.00 2.57
945 1147 1.933115 GCGGGGGTCGACGTTACTAA 61.933 60.000 9.92 0.00 42.43 2.24
1099 1314 2.280186 GCCGTAATCCTCCGCTGG 60.280 66.667 0.00 0.00 0.00 4.85
1203 1424 2.520982 TAGCCGATGTAGCCGCCT 60.521 61.111 0.00 0.00 0.00 5.52
1314 1535 2.673200 GGTGATGGAGGAGCAGCCA 61.673 63.158 0.00 0.00 40.02 4.75
1344 1565 0.394762 TGTACGCCGTGGGTCTCTAT 60.395 55.000 0.00 0.00 0.00 1.98
1352 1575 2.813908 GGAAGCTGTACGCCGTGG 60.814 66.667 0.00 0.00 40.39 4.94
1357 1580 0.102663 GGTAGGAGGAAGCTGTACGC 59.897 60.000 0.00 2.08 39.57 4.42
1396 1619 0.389426 CTACAAGAACCACCGGACGG 60.389 60.000 9.46 11.31 42.03 4.79
1495 1732 3.144506 TCTCGGACTGAATCCCGTATAC 58.855 50.000 0.00 0.00 46.04 1.47
1501 1738 3.760580 ATCATTCTCGGACTGAATCCC 57.239 47.619 0.00 0.00 46.04 3.85
1545 1782 4.649218 ACATTGCCTCCAAGTACAAAAGTT 59.351 37.500 0.00 0.00 33.80 2.66
1548 1785 4.521256 GGTACATTGCCTCCAAGTACAAAA 59.479 41.667 0.00 0.00 37.33 2.44
1555 1793 1.942657 CATCGGTACATTGCCTCCAAG 59.057 52.381 0.00 0.00 33.80 3.61
1576 1814 6.842780 CAGTAACATTGATTTCACGATCGATG 59.157 38.462 24.34 15.96 46.51 3.84
1591 1829 7.132213 ACAGTTCAAACGAATCAGTAACATTG 58.868 34.615 0.00 0.00 0.00 2.82
1637 1875 1.677576 CCGTGGCAGTAATACTCGGTA 59.322 52.381 9.33 0.00 33.20 4.02
1638 1876 0.458669 CCGTGGCAGTAATACTCGGT 59.541 55.000 9.33 0.00 33.20 4.69
1639 1877 0.458669 ACCGTGGCAGTAATACTCGG 59.541 55.000 14.27 14.27 41.77 4.63
1640 1878 1.135199 ACACCGTGGCAGTAATACTCG 60.135 52.381 3.03 0.00 0.00 4.18
1703 2001 2.668617 TACCGATCATGTACGTACGC 57.331 50.000 20.18 0.00 0.00 4.42
1744 2042 2.813474 TGCGATTCGTTGCCTCCG 60.813 61.111 8.03 0.00 0.00 4.63
1826 2124 2.964925 GCATCGCCCGTATCGCAA 60.965 61.111 0.00 0.00 0.00 4.85
1860 2158 2.161486 CAGTTCCTACGCAGCTCGC 61.161 63.158 5.63 2.29 43.23 5.03
2061 2359 2.037208 AGGGGAAAATGGGGTGCG 59.963 61.111 0.00 0.00 0.00 5.34
2070 2368 1.072505 GTGAGCGTCCAGGGGAAAA 59.927 57.895 0.00 0.00 31.38 2.29
2073 2371 3.311110 GTGTGAGCGTCCAGGGGA 61.311 66.667 0.00 0.00 0.00 4.81
2079 2377 2.430921 CTGTCCGTGTGAGCGTCC 60.431 66.667 0.00 0.00 0.00 4.79
2087 2385 1.512926 GATGTTCAAGCTGTCCGTGT 58.487 50.000 0.00 0.00 0.00 4.49
2088 2386 0.439985 CGATGTTCAAGCTGTCCGTG 59.560 55.000 0.00 0.00 0.00 4.94
2089 2387 0.033504 ACGATGTTCAAGCTGTCCGT 59.966 50.000 0.00 0.00 0.00 4.69
2090 2388 0.716108 GACGATGTTCAAGCTGTCCG 59.284 55.000 0.00 0.00 0.00 4.79
2091 2389 1.728971 CAGACGATGTTCAAGCTGTCC 59.271 52.381 0.00 0.00 0.00 4.02
2092 2390 2.677199 TCAGACGATGTTCAAGCTGTC 58.323 47.619 0.00 0.00 0.00 3.51
2093 2391 2.820059 TCAGACGATGTTCAAGCTGT 57.180 45.000 0.00 0.00 0.00 4.40
2094 2392 3.063180 GGATTCAGACGATGTTCAAGCTG 59.937 47.826 0.00 0.00 0.00 4.24
2095 2393 3.265791 GGATTCAGACGATGTTCAAGCT 58.734 45.455 0.00 0.00 0.00 3.74
2096 2394 3.002791 TGGATTCAGACGATGTTCAAGC 58.997 45.455 0.00 0.00 0.00 4.01
2097 2395 5.611796 TTTGGATTCAGACGATGTTCAAG 57.388 39.130 0.00 0.00 0.00 3.02
2098 2396 6.183360 TGTTTTTGGATTCAGACGATGTTCAA 60.183 34.615 0.00 0.00 0.00 2.69
2099 2397 5.298026 TGTTTTTGGATTCAGACGATGTTCA 59.702 36.000 0.00 0.00 0.00 3.18
2100 2398 5.757886 TGTTTTTGGATTCAGACGATGTTC 58.242 37.500 0.00 0.00 0.00 3.18
2101 2399 5.766150 TGTTTTTGGATTCAGACGATGTT 57.234 34.783 0.00 0.00 0.00 2.71
2127 2425 1.298340 CCACGTATGGGCTGTTGGA 59.702 57.895 0.00 0.00 43.04 3.53
2137 2435 2.549992 CCACATATCCACCCCACGTATG 60.550 54.545 0.00 0.00 0.00 2.39
2177 2475 1.915614 CTGTCCAACATGGCGAGTGC 61.916 60.000 0.00 0.00 37.47 4.40
2180 2478 1.021390 GGTCTGTCCAACATGGCGAG 61.021 60.000 0.00 0.00 37.47 5.03
2184 2484 1.283029 AGATGGGTCTGTCCAACATGG 59.717 52.381 0.00 0.00 40.62 3.66
2189 2489 0.895530 GTCGAGATGGGTCTGTCCAA 59.104 55.000 0.00 0.00 40.62 3.53
2217 2517 5.104259 ACAGATGGGCCTTTTTCTACTAG 57.896 43.478 4.53 0.00 0.00 2.57
2218 2518 4.080526 GGACAGATGGGCCTTTTTCTACTA 60.081 45.833 4.53 0.00 0.00 1.82
2219 2519 3.308473 GGACAGATGGGCCTTTTTCTACT 60.308 47.826 4.53 0.00 0.00 2.57
2220 2520 3.017442 GGACAGATGGGCCTTTTTCTAC 58.983 50.000 4.53 0.72 0.00 2.59
2221 2521 2.025321 GGGACAGATGGGCCTTTTTCTA 60.025 50.000 4.53 0.00 0.00 2.10
2222 2522 1.272704 GGGACAGATGGGCCTTTTTCT 60.273 52.381 4.53 0.00 0.00 2.52
2223 2523 1.186200 GGGACAGATGGGCCTTTTTC 58.814 55.000 4.53 0.00 0.00 2.29
2224 2524 0.611896 CGGGACAGATGGGCCTTTTT 60.612 55.000 4.53 0.00 0.00 1.94
2225 2525 1.000896 CGGGACAGATGGGCCTTTT 60.001 57.895 4.53 0.00 0.00 2.27
2226 2526 2.677228 CGGGACAGATGGGCCTTT 59.323 61.111 4.53 0.00 0.00 3.11
2227 2527 2.833151 TACCGGGACAGATGGGCCTT 62.833 60.000 6.32 0.00 0.00 4.35
2228 2528 2.621672 ATACCGGGACAGATGGGCCT 62.622 60.000 6.32 0.00 0.00 5.19
2229 2529 0.834687 TATACCGGGACAGATGGGCC 60.835 60.000 6.32 0.00 0.00 5.80
2230 2530 1.276622 ATATACCGGGACAGATGGGC 58.723 55.000 6.32 0.00 0.00 5.36
2231 2531 4.159879 GTCTTATATACCGGGACAGATGGG 59.840 50.000 6.32 0.00 0.00 4.00
2232 2532 4.159879 GGTCTTATATACCGGGACAGATGG 59.840 50.000 6.32 0.00 0.00 3.51
2233 2533 4.159879 GGGTCTTATATACCGGGACAGATG 59.840 50.000 6.32 0.00 37.93 2.90
2234 2534 4.202749 TGGGTCTTATATACCGGGACAGAT 60.203 45.833 6.32 0.00 37.93 2.90
2235 2535 3.140707 TGGGTCTTATATACCGGGACAGA 59.859 47.826 6.32 0.00 37.93 3.41
2236 2536 3.503365 TGGGTCTTATATACCGGGACAG 58.497 50.000 6.32 0.00 37.93 3.51
2237 2537 3.616343 TGGGTCTTATATACCGGGACA 57.384 47.619 6.32 0.00 37.93 4.02
2238 2538 4.159879 CAGATGGGTCTTATATACCGGGAC 59.840 50.000 6.32 0.61 37.93 4.46
2239 2539 4.202749 ACAGATGGGTCTTATATACCGGGA 60.203 45.833 6.32 0.00 37.93 5.14
2240 2540 4.094476 ACAGATGGGTCTTATATACCGGG 58.906 47.826 6.32 0.00 37.93 5.73
2241 2541 4.159879 GGACAGATGGGTCTTATATACCGG 59.840 50.000 0.00 0.00 37.93 5.28
2242 2542 4.159879 GGGACAGATGGGTCTTATATACCG 59.840 50.000 0.00 0.00 37.93 4.02
2243 2543 4.159879 CGGGACAGATGGGTCTTATATACC 59.840 50.000 0.00 0.00 37.91 2.73
2244 2544 4.159879 CCGGGACAGATGGGTCTTATATAC 59.840 50.000 0.00 0.00 37.91 1.47
2245 2545 4.202749 ACCGGGACAGATGGGTCTTATATA 60.203 45.833 6.32 0.00 37.91 0.86
2246 2546 3.173965 CCGGGACAGATGGGTCTTATAT 58.826 50.000 0.00 0.00 37.91 0.86
2247 2547 2.090943 ACCGGGACAGATGGGTCTTATA 60.091 50.000 6.32 0.00 37.91 0.98
2248 2548 1.344087 ACCGGGACAGATGGGTCTTAT 60.344 52.381 6.32 0.00 37.91 1.73
2249 2549 0.042131 ACCGGGACAGATGGGTCTTA 59.958 55.000 6.32 0.00 37.91 2.10
2250 2550 0.840722 AACCGGGACAGATGGGTCTT 60.841 55.000 6.32 0.00 37.91 3.01
2251 2551 1.229529 AACCGGGACAGATGGGTCT 60.230 57.895 6.32 0.00 37.91 3.85
2252 2552 1.078426 CAACCGGGACAGATGGGTC 60.078 63.158 6.32 0.00 37.06 4.46
2253 2553 2.602676 CCAACCGGGACAGATGGGT 61.603 63.158 6.32 0.00 40.01 4.51
2254 2554 2.272146 CCAACCGGGACAGATGGG 59.728 66.667 6.32 0.00 40.01 4.00
2267 2567 0.401356 TTTAGTCCCGGTTCCCCAAC 59.599 55.000 0.00 0.00 0.00 3.77
2268 2568 0.694196 CTTTAGTCCCGGTTCCCCAA 59.306 55.000 0.00 0.00 0.00 4.12
2269 2569 1.202769 CCTTTAGTCCCGGTTCCCCA 61.203 60.000 0.00 0.00 0.00 4.96
2270 2570 1.605992 CCTTTAGTCCCGGTTCCCC 59.394 63.158 0.00 0.00 0.00 4.81
2271 2571 1.203441 ACCCTTTAGTCCCGGTTCCC 61.203 60.000 0.00 0.00 0.00 3.97
2272 2572 0.251354 GACCCTTTAGTCCCGGTTCC 59.749 60.000 0.00 0.00 0.00 3.62
2273 2573 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
2274 2574 0.833409 ACGACCCTTTAGTCCCGGTT 60.833 55.000 0.00 0.00 32.91 4.44
2275 2575 0.833409 AACGACCCTTTAGTCCCGGT 60.833 55.000 0.00 0.00 32.91 5.28
2276 2576 1.134995 GTAACGACCCTTTAGTCCCGG 60.135 57.143 0.00 0.00 32.91 5.73
2277 2577 1.821136 AGTAACGACCCTTTAGTCCCG 59.179 52.381 0.00 0.00 32.91 5.14
2278 2578 5.354767 CATTAGTAACGACCCTTTAGTCCC 58.645 45.833 0.00 0.00 32.91 4.46
2279 2579 4.807834 GCATTAGTAACGACCCTTTAGTCC 59.192 45.833 0.00 0.00 32.91 3.85
2280 2580 4.807834 GGCATTAGTAACGACCCTTTAGTC 59.192 45.833 0.00 0.00 0.00 2.59
2281 2581 4.468868 AGGCATTAGTAACGACCCTTTAGT 59.531 41.667 0.00 0.00 0.00 2.24
2282 2582 5.019785 AGGCATTAGTAACGACCCTTTAG 57.980 43.478 0.00 0.00 0.00 1.85
2283 2583 5.069516 CCTAGGCATTAGTAACGACCCTTTA 59.930 44.000 0.00 0.00 0.00 1.85
2284 2584 3.994931 AGGCATTAGTAACGACCCTTT 57.005 42.857 0.00 0.00 0.00 3.11
2285 2585 3.387050 CCTAGGCATTAGTAACGACCCTT 59.613 47.826 0.00 0.00 0.00 3.95
2286 2586 2.963782 CCTAGGCATTAGTAACGACCCT 59.036 50.000 0.00 0.00 0.00 4.34
2287 2587 2.547430 GCCTAGGCATTAGTAACGACCC 60.547 54.545 29.33 0.00 41.49 4.46
2288 2588 2.547430 GGCCTAGGCATTAGTAACGACC 60.547 54.545 34.09 9.02 44.11 4.79
2289 2589 2.364647 AGGCCTAGGCATTAGTAACGAC 59.635 50.000 34.09 12.73 44.11 4.34
2290 2590 2.364324 CAGGCCTAGGCATTAGTAACGA 59.636 50.000 34.09 0.00 44.11 3.85
2291 2591 2.102588 ACAGGCCTAGGCATTAGTAACG 59.897 50.000 34.09 16.36 44.11 3.18
2292 2592 3.840124 ACAGGCCTAGGCATTAGTAAC 57.160 47.619 34.09 14.74 44.11 2.50
2293 2593 4.553678 ACTACAGGCCTAGGCATTAGTAA 58.446 43.478 34.09 11.92 44.11 2.24
2294 2594 4.150359 GACTACAGGCCTAGGCATTAGTA 58.850 47.826 34.09 23.69 44.11 1.82
2295 2595 2.966516 GACTACAGGCCTAGGCATTAGT 59.033 50.000 34.09 30.64 44.11 2.24
2296 2596 2.300437 GGACTACAGGCCTAGGCATTAG 59.700 54.545 34.09 28.09 44.11 1.73
2297 2597 2.326428 GGACTACAGGCCTAGGCATTA 58.674 52.381 34.09 19.65 44.11 1.90
2298 2598 1.132500 GGACTACAGGCCTAGGCATT 58.868 55.000 34.09 19.43 44.11 3.56
2299 2599 0.764752 GGGACTACAGGCCTAGGCAT 60.765 60.000 34.09 26.60 44.11 4.40
2300 2600 1.382695 GGGACTACAGGCCTAGGCA 60.383 63.158 34.09 13.72 44.11 4.75
2301 2601 2.499827 CGGGACTACAGGCCTAGGC 61.500 68.421 26.55 26.55 41.06 3.93
2302 2602 1.833049 CCGGGACTACAGGCCTAGG 60.833 68.421 3.98 3.67 0.00 3.02
2303 2603 0.686769 AACCGGGACTACAGGCCTAG 60.687 60.000 3.98 1.97 0.00 3.02
2304 2604 0.685458 GAACCGGGACTACAGGCCTA 60.685 60.000 3.98 0.00 0.00 3.93
2305 2605 1.988406 GAACCGGGACTACAGGCCT 60.988 63.158 6.32 0.00 0.00 5.19
2306 2606 1.551019 AAGAACCGGGACTACAGGCC 61.551 60.000 6.32 0.00 0.00 5.19
2307 2607 1.188863 TAAGAACCGGGACTACAGGC 58.811 55.000 6.32 0.00 0.00 4.85
2308 2608 4.213513 AGTATAAGAACCGGGACTACAGG 58.786 47.826 6.32 0.00 0.00 4.00
2309 2609 6.238869 GGTTAGTATAAGAACCGGGACTACAG 60.239 46.154 6.32 0.00 36.05 2.74
2310 2610 5.594317 GGTTAGTATAAGAACCGGGACTACA 59.406 44.000 6.32 0.00 36.05 2.74
2311 2611 6.078202 GGTTAGTATAAGAACCGGGACTAC 57.922 45.833 6.32 0.00 36.05 2.73
2319 2619 4.646492 TCTGTCCCGGTTAGTATAAGAACC 59.354 45.833 0.00 6.89 41.52 3.62
2320 2620 5.841957 TCTGTCCCGGTTAGTATAAGAAC 57.158 43.478 0.00 0.00 0.00 3.01
2321 2621 5.303589 CCATCTGTCCCGGTTAGTATAAGAA 59.696 44.000 0.00 0.00 0.00 2.52
2322 2622 4.831155 CCATCTGTCCCGGTTAGTATAAGA 59.169 45.833 0.00 0.00 0.00 2.10
2323 2623 4.021368 CCCATCTGTCCCGGTTAGTATAAG 60.021 50.000 0.00 0.00 0.00 1.73
2324 2624 3.899360 CCCATCTGTCCCGGTTAGTATAA 59.101 47.826 0.00 0.00 0.00 0.98
2325 2625 3.503365 CCCATCTGTCCCGGTTAGTATA 58.497 50.000 0.00 0.00 0.00 1.47
2326 2626 2.326428 CCCATCTGTCCCGGTTAGTAT 58.674 52.381 0.00 0.00 0.00 2.12
2327 2627 1.784358 CCCATCTGTCCCGGTTAGTA 58.216 55.000 0.00 0.00 0.00 1.82
2328 2628 1.623542 GCCCATCTGTCCCGGTTAGT 61.624 60.000 0.00 0.00 0.00 2.24
2329 2629 1.146263 GCCCATCTGTCCCGGTTAG 59.854 63.158 0.00 0.00 0.00 2.34
2330 2630 3.316029 GCCCATCTGTCCCGGTTA 58.684 61.111 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.