Multiple sequence alignment - TraesCS3D01G444000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G444000 chr3D 100.000 3470 0 0 1 3470 553234407 553230938 0.000000e+00 6408.0
1 TraesCS3D01G444000 chr3D 81.675 191 23 11 2918 3106 151067705 151067885 7.760000e-32 148.0
2 TraesCS3D01G444000 chr3D 90.099 101 9 1 629 729 553215454 553215355 2.810000e-26 130.0
3 TraesCS3D01G444000 chr3D 86.607 112 13 1 3137 3246 329340295 329340184 4.700000e-24 122.0
4 TraesCS3D01G444000 chr3D 93.182 44 3 0 582 625 400786211 400786168 8.040000e-07 65.8
5 TraesCS3D01G444000 chr3D 97.297 37 1 0 3246 3282 19039280 19039316 2.890000e-06 63.9
6 TraesCS3D01G444000 chr3D 97.059 34 1 0 582 615 362199668 362199701 1.350000e-04 58.4
7 TraesCS3D01G444000 chr3D 100.000 28 0 0 1235 1262 6467695 6467668 6.000000e-03 52.8
8 TraesCS3D01G444000 chr3B 90.161 2490 171 31 268 2733 734437766 734435327 0.000000e+00 3173.0
9 TraesCS3D01G444000 chr3B 84.926 471 61 9 2583 3049 734434097 734433633 5.240000e-128 468.0
10 TraesCS3D01G444000 chr3B 89.562 297 18 4 1 286 734439320 734439026 7.080000e-97 364.0
11 TraesCS3D01G444000 chr3B 88.172 186 13 3 2253 2430 734434997 734434813 2.710000e-51 213.0
12 TraesCS3D01G444000 chr3B 92.035 113 6 2 2443 2555 734434585 734434476 4.640000e-34 156.0
13 TraesCS3D01G444000 chr3B 91.089 101 8 1 629 729 734429560 734429461 6.040000e-28 135.0
14 TraesCS3D01G444000 chr3A 90.640 2265 191 13 897 3146 689502203 689499945 0.000000e+00 2988.0
15 TraesCS3D01G444000 chr3A 89.492 1123 97 10 1981 3091 689505190 689504077 0.000000e+00 1400.0
16 TraesCS3D01G444000 chr3A 92.000 600 46 2 773 1370 689506011 689505412 0.000000e+00 841.0
17 TraesCS3D01G444000 chr3A 85.907 518 23 11 386 900 689504083 689503613 1.110000e-139 507.0
18 TraesCS3D01G444000 chr3A 92.308 221 17 0 1904 2124 689505407 689505187 7.230000e-82 315.0
19 TraesCS3D01G444000 chr3A 91.089 101 8 1 629 729 689496960 689496861 6.040000e-28 135.0
20 TraesCS3D01G444000 chr3A 86.792 106 12 1 3143 3246 674131618 674131513 2.190000e-22 117.0
21 TraesCS3D01G444000 chr3A 97.297 37 1 0 582 618 8632845 8632881 2.890000e-06 63.9
22 TraesCS3D01G444000 chr3A 93.023 43 3 0 582 624 482404512 482404554 2.890000e-06 63.9
23 TraesCS3D01G444000 chr6D 82.197 1584 262 13 903 2469 429010084 429011664 0.000000e+00 1345.0
24 TraesCS3D01G444000 chr6D 96.809 188 6 0 3283 3470 428578388 428578575 7.230000e-82 315.0
25 TraesCS3D01G444000 chr6D 86.702 188 25 0 2733 2920 361374835 361375022 3.510000e-50 209.0
26 TraesCS3D01G444000 chr6D 83.938 193 28 3 2729 2920 216768981 216769171 7.650000e-42 182.0
27 TraesCS3D01G444000 chr6A 81.053 1710 285 25 773 2456 574241830 574243526 0.000000e+00 1327.0
28 TraesCS3D01G444000 chr6A 88.021 192 21 1 2733 2924 35322956 35323145 3.480000e-55 226.0
29 TraesCS3D01G444000 chr6A 80.087 231 31 14 2927 3146 35323389 35323615 1.290000e-34 158.0
30 TraesCS3D01G444000 chr6A 87.500 112 12 1 3137 3246 65230027 65230138 1.010000e-25 128.0
31 TraesCS3D01G444000 chr6A 93.023 43 3 0 582 624 209391383 209391425 2.890000e-06 63.9
32 TraesCS3D01G444000 chr6A 90.698 43 4 0 582 624 161780155 161780113 1.350000e-04 58.4
33 TraesCS3D01G444000 chr6A 96.875 32 1 0 587 618 233958397 233958428 2.000000e-03 54.7
34 TraesCS3D01G444000 chr6B 80.256 1722 300 27 773 2469 646240168 646241874 0.000000e+00 1260.0
35 TraesCS3D01G444000 chr6B 89.637 193 19 1 2729 2920 591261321 591261513 9.620000e-61 244.0
36 TraesCS3D01G444000 chr6B 88.889 108 11 1 3139 3246 176968192 176968298 7.810000e-27 132.0
37 TraesCS3D01G444000 chr6B 93.023 43 3 0 582 624 278674655 278674697 2.890000e-06 63.9
38 TraesCS3D01G444000 chr7B 75.236 1058 237 17 1332 2378 130747054 130746011 2.420000e-131 479.0
39 TraesCS3D01G444000 chr7B 94.771 153 8 0 3130 3282 610365574 610365422 4.480000e-59 239.0
40 TraesCS3D01G444000 chr7A 75.283 1060 233 20 1332 2378 167904412 167903369 2.420000e-131 479.0
41 TraesCS3D01G444000 chr7A 74.283 941 210 25 1453 2377 167986879 167985955 5.470000e-98 368.0
42 TraesCS3D01G444000 chr7D 74.493 937 215 21 1453 2377 166886918 166885994 5.430000e-103 385.0
43 TraesCS3D01G444000 chr7D 74.009 858 196 24 1453 2296 166927563 166926719 1.200000e-84 324.0
44 TraesCS3D01G444000 chr7D 95.620 137 6 0 3146 3282 18120858 18120994 1.620000e-53 220.0
45 TraesCS3D01G444000 chr7D 83.333 222 32 5 2926 3146 427896845 427896628 2.110000e-47 200.0
46 TraesCS3D01G444000 chr7D 82.514 183 27 4 2931 3112 516964541 516964363 4.640000e-34 156.0
47 TraesCS3D01G444000 chr2D 99.468 188 1 0 3283 3470 447658190 447658003 3.320000e-90 342.0
48 TraesCS3D01G444000 chr2D 87.624 202 23 2 2723 2923 576201706 576201506 2.080000e-57 233.0
49 TraesCS3D01G444000 chr4D 98.936 188 2 0 3283 3470 87037158 87036971 1.540000e-88 337.0
50 TraesCS3D01G444000 chr5D 98.413 189 3 0 3282 3470 558132854 558132666 2.000000e-87 333.0
51 TraesCS3D01G444000 chr5D 88.406 138 15 1 3145 3282 357380789 357380653 7.700000e-37 165.0
52 TraesCS3D01G444000 chr5D 86.607 112 13 1 3137 3246 538225610 538225721 4.700000e-24 122.0
53 TraesCS3D01G444000 chr4A 96.825 189 6 0 3282 3470 520687857 520687669 2.010000e-82 316.0
54 TraesCS3D01G444000 chr5B 96.809 188 6 0 3283 3470 226593998 226594185 7.230000e-82 315.0
55 TraesCS3D01G444000 chr5B 80.263 228 33 9 2918 3139 389825298 389825519 9.970000e-36 161.0
56 TraesCS3D01G444000 chr5B 87.778 90 8 3 2925 3014 571996584 571996670 6.130000e-18 102.0
57 TraesCS3D01G444000 chr5A 96.277 188 7 0 3283 3470 684072964 684073151 3.360000e-80 309.0
58 TraesCS3D01G444000 chr5A 92.857 42 3 0 586 627 184233403 184233444 1.040000e-05 62.1
59 TraesCS3D01G444000 chr1D 97.253 182 5 0 3283 3464 39379407 39379588 3.360000e-80 309.0
60 TraesCS3D01G444000 chr1D 96.277 188 7 0 3283 3470 417989721 417989908 3.360000e-80 309.0
61 TraesCS3D01G444000 chr1D 93.333 45 3 0 586 630 116546648 116546604 2.240000e-07 67.6
62 TraesCS3D01G444000 chr1B 91.912 136 11 0 3147 3282 645297789 645297924 1.270000e-44 191.0
63 TraesCS3D01G444000 chr1A 86.127 173 24 0 2752 2924 474772996 474772824 1.640000e-43 187.0
64 TraesCS3D01G444000 chr2B 82.836 134 22 1 2923 3056 797279139 797279271 6.080000e-23 119.0
65 TraesCS3D01G444000 chr4B 97.143 35 1 0 582 616 611855347 611855381 3.740000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G444000 chr3D 553230938 553234407 3469 True 6408.0 6408 100.000000 1 3470 1 chr3D.!!$R5 3469
1 TraesCS3D01G444000 chr3B 734433633 734439320 5687 True 874.8 3173 88.971200 1 3049 5 chr3B.!!$R2 3048
2 TraesCS3D01G444000 chr3A 689496861 689506011 9150 True 1031.0 2988 90.239333 386 3146 6 chr3A.!!$R2 2760
3 TraesCS3D01G444000 chr6D 429010084 429011664 1580 False 1345.0 1345 82.197000 903 2469 1 chr6D.!!$F4 1566
4 TraesCS3D01G444000 chr6A 574241830 574243526 1696 False 1327.0 1327 81.053000 773 2456 1 chr6A.!!$F4 1683
5 TraesCS3D01G444000 chr6B 646240168 646241874 1706 False 1260.0 1260 80.256000 773 2469 1 chr6B.!!$F4 1696
6 TraesCS3D01G444000 chr7B 130746011 130747054 1043 True 479.0 479 75.236000 1332 2378 1 chr7B.!!$R1 1046
7 TraesCS3D01G444000 chr7A 167903369 167904412 1043 True 479.0 479 75.283000 1332 2378 1 chr7A.!!$R1 1046
8 TraesCS3D01G444000 chr7A 167985955 167986879 924 True 368.0 368 74.283000 1453 2377 1 chr7A.!!$R2 924
9 TraesCS3D01G444000 chr7D 166885994 166886918 924 True 385.0 385 74.493000 1453 2377 1 chr7D.!!$R1 924
10 TraesCS3D01G444000 chr7D 166926719 166927563 844 True 324.0 324 74.009000 1453 2296 1 chr7D.!!$R2 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
727 2274 0.460987 GTAGCAGCGCCAGAATGTCT 60.461 55.0 2.29 0.0 0.0 3.41 F
1201 4190 0.390472 CTTCCTCCTTGTCTCCGCAC 60.390 60.0 0.00 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2456 5448 0.810031 CACTACTTATTGCCGCGGCT 60.81 55.0 45.79 31.94 42.51 5.52 R
3005 7374 0.250295 CCGCCTTCCACAAGTGAAGA 60.25 55.0 0.94 0.00 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.133181 TGGGCCCATGTTGTCAGAGA 61.133 55.000 24.45 0.00 0.00 3.10
72 73 9.102453 GGACACTTATAACCCTCCTCTATATTT 57.898 37.037 0.00 0.00 0.00 1.40
103 104 7.448469 CCAGTTTATGGGATTTTGGATACCTAG 59.552 40.741 0.00 0.00 46.36 3.02
106 107 4.682778 TGGGATTTTGGATACCTAGACG 57.317 45.455 0.00 0.00 0.00 4.18
113 114 5.840243 TTTGGATACCTAGACGAATTCGA 57.160 39.130 33.05 11.11 43.02 3.71
122 123 7.894376 ACCTAGACGAATTCGAACAAATTTA 57.106 32.000 33.05 9.06 43.02 1.40
123 124 8.488651 ACCTAGACGAATTCGAACAAATTTAT 57.511 30.769 33.05 7.43 43.02 1.40
124 125 8.388103 ACCTAGACGAATTCGAACAAATTTATG 58.612 33.333 33.05 9.37 43.02 1.90
137 138 7.096640 CGAACAAATTTATGACCACAGTTGAAC 60.097 37.037 0.00 0.00 0.00 3.18
172 183 7.693969 AAGTTTGGACTGATATTTTGAGAGG 57.306 36.000 0.00 0.00 35.91 3.69
173 184 6.183347 AGTTTGGACTGATATTTTGAGAGGG 58.817 40.000 0.00 0.00 33.99 4.30
271 282 3.787001 CCACGAGGGAGAAGGGGC 61.787 72.222 0.00 0.00 40.01 5.80
351 1639 1.672356 GACCGCAGCCAGACAACAT 60.672 57.895 0.00 0.00 0.00 2.71
359 1647 4.060205 GCAGCCAGACAACATTTTGAATT 58.940 39.130 0.00 0.00 36.48 2.17
394 1938 7.295201 TGCGAATAACAGTTTGAATAGTTGAC 58.705 34.615 0.00 0.00 0.00 3.18
401 1945 5.699458 ACAGTTTGAATAGTTGACTTACCGG 59.301 40.000 0.00 0.00 0.00 5.28
402 1946 5.121768 CAGTTTGAATAGTTGACTTACCGGG 59.878 44.000 6.32 0.00 0.00 5.73
416 1960 4.114997 CGGGCGTCACCAATTGCC 62.115 66.667 0.00 0.00 46.82 4.52
470 2014 5.316770 GTGTACAAAAAGATGCGAGATGAC 58.683 41.667 0.00 0.00 0.00 3.06
487 2031 1.002659 TGACCGGTGTCCAAATAGGTG 59.997 52.381 14.63 0.00 41.01 4.00
519 2063 9.751542 CTGTAATAGTAAGGACTAAATGGACAG 57.248 37.037 0.00 0.00 41.53 3.51
552 2097 4.080299 AGCGGAAAGGAGGAAATGACTAAT 60.080 41.667 0.00 0.00 0.00 1.73
599 2144 4.936891 ACTCTTTCAACTGCCAAAACATC 58.063 39.130 0.00 0.00 0.00 3.06
649 2195 2.035155 CTTTCCCAACCGGACCCC 59.965 66.667 9.46 0.00 41.83 4.95
673 2219 4.314121 AGTTCATGCTCTTGTGACTCTTC 58.686 43.478 0.00 0.00 0.00 2.87
724 2271 0.742281 ACAGTAGCAGCGCCAGAATG 60.742 55.000 2.29 0.00 0.00 2.67
727 2274 0.460987 GTAGCAGCGCCAGAATGTCT 60.461 55.000 2.29 0.00 0.00 3.41
728 2275 1.111277 TAGCAGCGCCAGAATGTCTA 58.889 50.000 2.29 0.00 0.00 2.59
729 2276 0.460987 AGCAGCGCCAGAATGTCTAC 60.461 55.000 2.29 0.00 0.00 2.59
730 2277 0.460987 GCAGCGCCAGAATGTCTACT 60.461 55.000 2.29 0.00 0.00 2.57
731 2278 1.284657 CAGCGCCAGAATGTCTACTG 58.715 55.000 2.29 0.00 0.00 2.74
758 2305 1.975837 CATGGCGTGCACGTTAATTT 58.024 45.000 36.80 15.67 42.22 1.82
759 2306 2.323959 CATGGCGTGCACGTTAATTTT 58.676 42.857 36.80 14.67 42.22 1.82
760 2307 2.493713 TGGCGTGCACGTTAATTTTT 57.506 40.000 36.80 0.00 42.22 1.94
893 2449 8.413229 GCTACAACATGTACCATATTCCATTTT 58.587 33.333 0.00 0.00 0.00 1.82
934 3905 5.355350 AGTTGGTAGCAATAGAATCAGTTGC 59.645 40.000 11.06 12.58 46.37 4.17
1050 4036 5.295292 CCTCAAATATGTCTACAAGCTGGTG 59.705 44.000 3.21 0.00 0.00 4.17
1071 4057 3.451178 TGGTAGACAACTTCCTAGCCATC 59.549 47.826 0.00 0.00 35.13 3.51
1093 4079 4.179361 CCATACCAATGGCCGCAT 57.821 55.556 0.00 0.00 46.17 4.73
1190 4179 1.002544 CTTCTTGTTCGGCTTCCTCCT 59.997 52.381 0.00 0.00 0.00 3.69
1197 4186 1.219393 CGGCTTCCTCCTTGTCTCC 59.781 63.158 0.00 0.00 0.00 3.71
1201 4190 0.390472 CTTCCTCCTTGTCTCCGCAC 60.390 60.000 0.00 0.00 0.00 5.34
1227 4216 2.554806 TGTATCTAATATCGCGGCCG 57.445 50.000 24.05 24.05 0.00 6.13
1366 4355 1.363744 CTTCATGTCACGGCTTCTCC 58.636 55.000 0.00 0.00 0.00 3.71
1404 4393 2.509336 GAGACATGCGGACCCACG 60.509 66.667 0.00 0.00 0.00 4.94
1422 4411 2.194868 CCGGCCCTTTACATCCCC 59.805 66.667 0.00 0.00 0.00 4.81
1440 4429 2.667318 CCCGCACAAGTACTGCACG 61.667 63.158 0.00 0.00 34.00 5.34
1902 4891 2.022129 CGCGGCGGATGATAAGTCC 61.022 63.158 15.84 0.00 0.00 3.85
2148 5140 1.919918 GAGCATTTTTGCATACACGCC 59.080 47.619 0.33 0.00 37.25 5.68
2435 5427 1.050988 ATCCACCGCTATCCAGTGCT 61.051 55.000 0.00 0.00 0.00 4.40
2456 5448 5.301551 TGCTGATTAAGTCTCCAAAAGCAAA 59.698 36.000 0.00 0.00 35.37 3.68
2498 6517 6.969043 TGGAGACACTGGTAAATTGGATATT 58.031 36.000 0.00 0.00 33.40 1.28
2512 6531 8.931385 AAATTGGATATTCTTAATGTGTGTGC 57.069 30.769 0.00 0.00 0.00 4.57
2513 6532 7.643569 ATTGGATATTCTTAATGTGTGTGCA 57.356 32.000 0.00 0.00 0.00 4.57
2546 6565 8.196771 TGAATTCATGCTCCAACCAATATTTAC 58.803 33.333 3.38 0.00 0.00 2.01
2550 6569 7.546358 TCATGCTCCAACCAATATTTACAAAG 58.454 34.615 0.00 0.00 0.00 2.77
2553 6572 7.731054 TGCTCCAACCAATATTTACAAAGTTT 58.269 30.769 0.00 0.00 0.00 2.66
2607 6975 9.944663 TGTGTTTTGTAAAAGATAATGACTCAC 57.055 29.630 0.00 0.00 0.00 3.51
2748 7116 2.052782 ATAACTAGCAAAAGGGCCCG 57.947 50.000 18.44 2.33 0.00 6.13
2848 7216 4.909696 TGAATATTTATGCACCAACCGG 57.090 40.909 0.00 0.00 38.77 5.28
2856 7224 3.947841 CACCAACCGGCACACGTG 61.948 66.667 15.48 15.48 42.24 4.49
2899 7267 2.291209 AACATGCTCACAATGGGTCA 57.709 45.000 0.00 0.00 0.00 4.02
2923 7292 3.532896 GGACTTGATCCTTGACGCA 57.467 52.632 0.00 0.00 45.22 5.24
2924 7293 1.363744 GGACTTGATCCTTGACGCAG 58.636 55.000 0.00 0.00 45.22 5.18
2925 7294 1.363744 GACTTGATCCTTGACGCAGG 58.636 55.000 0.00 0.00 34.86 4.85
2926 7295 0.036010 ACTTGATCCTTGACGCAGGG 60.036 55.000 2.30 2.30 34.24 4.45
2927 7296 0.036010 CTTGATCCTTGACGCAGGGT 60.036 55.000 7.63 0.00 34.24 4.34
2928 7297 0.321564 TTGATCCTTGACGCAGGGTG 60.322 55.000 0.00 0.00 34.24 4.61
2929 7298 1.191489 TGATCCTTGACGCAGGGTGA 61.191 55.000 0.00 0.00 34.24 4.02
2930 7299 0.460987 GATCCTTGACGCAGGGTGAG 60.461 60.000 0.00 0.00 34.24 3.51
2931 7300 1.194781 ATCCTTGACGCAGGGTGAGT 61.195 55.000 0.00 0.00 34.24 3.41
2932 7301 0.541063 TCCTTGACGCAGGGTGAGTA 60.541 55.000 0.00 0.00 34.24 2.59
2933 7302 0.320374 CCTTGACGCAGGGTGAGTAA 59.680 55.000 0.00 0.00 28.29 2.24
2934 7303 1.066143 CCTTGACGCAGGGTGAGTAAT 60.066 52.381 0.00 0.00 28.29 1.89
2935 7304 2.615493 CCTTGACGCAGGGTGAGTAATT 60.615 50.000 0.00 0.00 28.29 1.40
2936 7305 2.851263 TGACGCAGGGTGAGTAATTT 57.149 45.000 0.00 0.00 28.29 1.82
2937 7306 3.965379 TGACGCAGGGTGAGTAATTTA 57.035 42.857 0.00 0.00 28.29 1.40
2938 7307 3.592059 TGACGCAGGGTGAGTAATTTAC 58.408 45.455 0.00 0.00 28.29 2.01
2939 7308 3.259876 TGACGCAGGGTGAGTAATTTACT 59.740 43.478 8.81 8.81 42.86 2.24
2940 7309 4.251268 GACGCAGGGTGAGTAATTTACTT 58.749 43.478 10.32 0.00 39.59 2.24
2941 7310 4.251268 ACGCAGGGTGAGTAATTTACTTC 58.749 43.478 10.32 7.19 39.59 3.01
2942 7311 4.250464 CGCAGGGTGAGTAATTTACTTCA 58.750 43.478 10.32 7.37 39.59 3.02
2943 7312 4.693566 CGCAGGGTGAGTAATTTACTTCAA 59.306 41.667 10.32 0.00 39.59 2.69
2944 7313 5.390567 CGCAGGGTGAGTAATTTACTTCAAC 60.391 44.000 10.32 11.40 39.59 3.18
2945 7314 5.705905 GCAGGGTGAGTAATTTACTTCAACT 59.294 40.000 10.32 8.63 39.59 3.16
2946 7315 6.206829 GCAGGGTGAGTAATTTACTTCAACTT 59.793 38.462 10.32 6.67 39.59 2.66
2947 7316 7.255486 GCAGGGTGAGTAATTTACTTCAACTTT 60.255 37.037 10.32 4.20 39.59 2.66
2948 7317 9.280174 CAGGGTGAGTAATTTACTTCAACTTTA 57.720 33.333 10.32 0.00 39.59 1.85
2949 7318 9.856162 AGGGTGAGTAATTTACTTCAACTTTAA 57.144 29.630 10.32 0.00 39.59 1.52
2960 7329 8.795842 TTACTTCAACTTTAAGGTCAGTTTCA 57.204 30.769 0.00 0.00 30.48 2.69
2961 7330 7.696992 ACTTCAACTTTAAGGTCAGTTTCAA 57.303 32.000 0.00 0.00 30.48 2.69
2962 7331 8.293699 ACTTCAACTTTAAGGTCAGTTTCAAT 57.706 30.769 0.00 0.00 30.48 2.57
2963 7332 8.190784 ACTTCAACTTTAAGGTCAGTTTCAATG 58.809 33.333 0.00 0.00 30.48 2.82
2964 7333 7.873719 TCAACTTTAAGGTCAGTTTCAATGA 57.126 32.000 0.00 0.00 30.48 2.57
2965 7334 7.703328 TCAACTTTAAGGTCAGTTTCAATGAC 58.297 34.615 0.00 0.00 45.12 3.06
2973 7342 5.403897 GTCAGTTTCAATGACAGACGAAA 57.596 39.130 0.00 0.00 45.18 3.46
2974 7343 5.806286 GTCAGTTTCAATGACAGACGAAAA 58.194 37.500 0.00 0.00 45.18 2.29
2975 7344 6.255215 GTCAGTTTCAATGACAGACGAAAAA 58.745 36.000 0.00 0.00 45.18 1.94
2976 7345 6.912591 GTCAGTTTCAATGACAGACGAAAAAT 59.087 34.615 0.00 0.00 45.18 1.82
2977 7346 7.432252 GTCAGTTTCAATGACAGACGAAAAATT 59.568 33.333 0.00 0.00 45.18 1.82
2978 7347 7.643764 TCAGTTTCAATGACAGACGAAAAATTC 59.356 33.333 0.00 0.00 0.00 2.17
2979 7348 7.431960 CAGTTTCAATGACAGACGAAAAATTCA 59.568 33.333 0.00 0.00 0.00 2.57
2980 7349 7.645340 AGTTTCAATGACAGACGAAAAATTCAG 59.355 33.333 0.00 0.00 0.00 3.02
2981 7350 6.859420 TCAATGACAGACGAAAAATTCAGA 57.141 33.333 0.00 0.00 0.00 3.27
2982 7351 6.891624 TCAATGACAGACGAAAAATTCAGAG 58.108 36.000 0.00 0.00 0.00 3.35
2983 7352 6.705825 TCAATGACAGACGAAAAATTCAGAGA 59.294 34.615 0.00 0.00 0.00 3.10
2984 7353 7.226523 TCAATGACAGACGAAAAATTCAGAGAA 59.773 33.333 0.00 0.00 0.00 2.87
2985 7354 6.918892 TGACAGACGAAAAATTCAGAGAAA 57.081 33.333 0.00 0.00 0.00 2.52
2986 7355 6.715464 TGACAGACGAAAAATTCAGAGAAAC 58.285 36.000 0.00 0.00 0.00 2.78
2987 7356 6.315144 TGACAGACGAAAAATTCAGAGAAACA 59.685 34.615 0.00 0.00 0.00 2.83
2988 7357 7.083875 ACAGACGAAAAATTCAGAGAAACAA 57.916 32.000 0.00 0.00 0.00 2.83
2989 7358 7.707104 ACAGACGAAAAATTCAGAGAAACAAT 58.293 30.769 0.00 0.00 0.00 2.71
2990 7359 8.190784 ACAGACGAAAAATTCAGAGAAACAATT 58.809 29.630 0.00 0.00 0.00 2.32
2991 7360 9.663904 CAGACGAAAAATTCAGAGAAACAATTA 57.336 29.630 0.00 0.00 0.00 1.40
3022 7391 4.385358 TTTTTCTTCACTTGTGGAAGGC 57.615 40.909 0.64 0.00 41.59 4.35
3035 7404 1.153025 GAAGGCGGGGTGGGTAATC 60.153 63.158 0.00 0.00 0.00 1.75
3071 7440 1.683790 GCAGTTTCGATGACGGACGG 61.684 60.000 0.00 0.00 40.21 4.79
3079 7547 1.006391 CGATGACGGACGGAAAAATCG 60.006 52.381 0.00 0.00 35.72 3.34
3159 7631 7.872881 ACTTTAACTTTACTAGCAAAAGAGCC 58.127 34.615 19.70 0.00 37.38 4.70
3160 7632 6.812879 TTAACTTTACTAGCAAAAGAGCCC 57.187 37.500 19.70 0.00 37.38 5.19
3161 7633 3.335579 ACTTTACTAGCAAAAGAGCCCG 58.664 45.455 19.70 0.00 37.38 6.13
3162 7634 3.244457 ACTTTACTAGCAAAAGAGCCCGT 60.244 43.478 19.70 0.00 37.38 5.28
3163 7635 2.380084 TACTAGCAAAAGAGCCCGTG 57.620 50.000 0.00 0.00 34.23 4.94
3164 7636 0.955919 ACTAGCAAAAGAGCCCGTGC 60.956 55.000 0.00 0.00 37.26 5.34
3166 7638 2.725203 TAGCAAAAGAGCCCGTGCGT 62.725 55.000 0.00 0.00 44.33 5.24
3167 7639 3.030652 CAAAAGAGCCCGTGCGTT 58.969 55.556 0.00 0.00 44.33 4.84
3169 7641 3.194272 AAAAGAGCCCGTGCGTTGC 62.194 57.895 0.00 0.00 44.33 4.17
3170 7642 4.626081 AAGAGCCCGTGCGTTGCT 62.626 61.111 5.73 5.73 44.33 3.91
3171 7643 2.725203 AAAGAGCCCGTGCGTTGCTA 62.725 55.000 5.98 0.00 44.33 3.49
3172 7644 3.488090 GAGCCCGTGCGTTGCTAC 61.488 66.667 5.98 0.00 44.33 3.58
3182 7654 3.806591 CGTTGCTACGGGAGAGAAA 57.193 52.632 13.04 0.00 43.94 2.52
3183 7655 2.074547 CGTTGCTACGGGAGAGAAAA 57.925 50.000 13.04 0.00 43.94 2.29
3184 7656 2.618053 CGTTGCTACGGGAGAGAAAAT 58.382 47.619 13.04 0.00 43.94 1.82
3185 7657 3.777478 CGTTGCTACGGGAGAGAAAATA 58.223 45.455 13.04 0.00 43.94 1.40
3186 7658 4.178540 CGTTGCTACGGGAGAGAAAATAA 58.821 43.478 13.04 0.00 43.94 1.40
3187 7659 4.032558 CGTTGCTACGGGAGAGAAAATAAC 59.967 45.833 13.04 0.00 43.94 1.89
3188 7660 4.811969 TGCTACGGGAGAGAAAATAACA 57.188 40.909 0.00 0.00 0.00 2.41
3191 7663 4.804665 GCTACGGGAGAGAAAATAACAGAC 59.195 45.833 0.00 0.00 0.00 3.51
3192 7664 3.846360 ACGGGAGAGAAAATAACAGACG 58.154 45.455 0.00 0.00 0.00 4.18
3193 7665 2.603560 CGGGAGAGAAAATAACAGACGC 59.396 50.000 0.00 0.00 0.00 5.19
3194 7666 3.676324 CGGGAGAGAAAATAACAGACGCT 60.676 47.826 0.00 0.00 0.00 5.07
3195 7667 3.866327 GGGAGAGAAAATAACAGACGCTC 59.134 47.826 0.00 0.00 0.00 5.03
3196 7668 4.382147 GGGAGAGAAAATAACAGACGCTCT 60.382 45.833 0.00 0.00 34.26 4.09
3197 7669 5.172205 GGAGAGAAAATAACAGACGCTCTT 58.828 41.667 0.00 0.00 31.95 2.85
3198 7670 6.331061 GGAGAGAAAATAACAGACGCTCTTA 58.669 40.000 0.00 0.00 31.95 2.10
3199 7671 6.474102 GGAGAGAAAATAACAGACGCTCTTAG 59.526 42.308 0.00 0.00 31.95 2.18
3200 7672 5.808030 AGAGAAAATAACAGACGCTCTTAGC 59.192 40.000 0.00 0.00 38.02 3.09
3201 7673 4.870991 AGAAAATAACAGACGCTCTTAGCC 59.129 41.667 0.00 0.00 38.18 3.93
3202 7674 2.892784 ATAACAGACGCTCTTAGCCC 57.107 50.000 0.00 0.00 38.18 5.19
3204 7676 0.685097 AACAGACGCTCTTAGCCCAA 59.315 50.000 0.00 0.00 38.18 4.12
3205 7677 0.905357 ACAGACGCTCTTAGCCCAAT 59.095 50.000 0.00 0.00 38.18 3.16
3207 7679 2.500098 ACAGACGCTCTTAGCCCAATAA 59.500 45.455 0.00 0.00 38.18 1.40
3208 7680 2.866762 CAGACGCTCTTAGCCCAATAAC 59.133 50.000 0.00 0.00 38.18 1.89
3209 7681 2.158943 AGACGCTCTTAGCCCAATAACC 60.159 50.000 0.00 0.00 38.18 2.85
3210 7682 1.557832 ACGCTCTTAGCCCAATAACCA 59.442 47.619 0.00 0.00 38.18 3.67
3211 7683 2.172717 ACGCTCTTAGCCCAATAACCAT 59.827 45.455 0.00 0.00 38.18 3.55
3212 7684 2.549754 CGCTCTTAGCCCAATAACCATG 59.450 50.000 0.00 0.00 38.18 3.66
3213 7685 3.555966 GCTCTTAGCCCAATAACCATGT 58.444 45.455 0.00 0.00 34.48 3.21
3214 7686 3.565902 GCTCTTAGCCCAATAACCATGTC 59.434 47.826 0.00 0.00 34.48 3.06
3215 7687 4.687219 GCTCTTAGCCCAATAACCATGTCT 60.687 45.833 0.00 0.00 34.48 3.41
3216 7688 5.036117 TCTTAGCCCAATAACCATGTCTC 57.964 43.478 0.00 0.00 0.00 3.36
3218 7690 3.737559 AGCCCAATAACCATGTCTCAA 57.262 42.857 0.00 0.00 0.00 3.02
3220 7692 3.266772 AGCCCAATAACCATGTCTCAAGA 59.733 43.478 0.00 0.00 0.00 3.02
3221 7693 3.378427 GCCCAATAACCATGTCTCAAGAC 59.622 47.826 3.13 3.13 44.97 3.01
3222 7694 3.947834 CCCAATAACCATGTCTCAAGACC 59.052 47.826 7.66 0.00 44.15 3.85
3223 7695 3.947834 CCAATAACCATGTCTCAAGACCC 59.052 47.826 7.66 0.00 44.15 4.46
3226 7698 6.414732 CAATAACCATGTCTCAAGACCCTAA 58.585 40.000 7.66 0.00 44.15 2.69
3228 7700 7.931015 ATAACCATGTCTCAAGACCCTAATA 57.069 36.000 7.66 0.00 44.15 0.98
3233 7705 5.515797 TGTCTCAAGACCCTAATATGTCG 57.484 43.478 7.66 0.00 44.15 4.35
3235 7707 5.833667 TGTCTCAAGACCCTAATATGTCGAT 59.166 40.000 7.66 0.00 44.15 3.59
3243 8687 6.781014 AGACCCTAATATGTCGATGTCCTTTA 59.219 38.462 0.00 0.00 36.61 1.85
3250 8694 2.238646 TGTCGATGTCCTTTATTGGCCT 59.761 45.455 3.32 0.00 0.00 5.19
3251 8695 2.872858 GTCGATGTCCTTTATTGGCCTC 59.127 50.000 3.32 0.00 0.00 4.70
3252 8696 2.503765 TCGATGTCCTTTATTGGCCTCA 59.496 45.455 3.32 0.00 0.00 3.86
3254 8698 3.682718 CGATGTCCTTTATTGGCCTCAGT 60.683 47.826 3.32 0.00 0.00 3.41
3255 8699 3.071874 TGTCCTTTATTGGCCTCAGTG 57.928 47.619 3.32 0.00 0.00 3.66
3258 8702 2.019984 CCTTTATTGGCCTCAGTGCTC 58.980 52.381 3.32 0.00 0.00 4.26
3260 8704 2.113860 TTATTGGCCTCAGTGCTCAC 57.886 50.000 3.32 0.00 0.00 3.51
3274 8718 2.341168 GTGCTCACACAACAAAAACACG 59.659 45.455 0.00 0.00 46.61 4.49
3276 8720 2.983803 GCTCACACAACAAAAACACGTT 59.016 40.909 0.00 0.00 0.00 3.99
3277 8721 3.427193 GCTCACACAACAAAAACACGTTT 59.573 39.130 0.00 0.00 0.00 3.60
3278 8722 4.662891 GCTCACACAACAAAAACACGTTTG 60.663 41.667 0.00 0.00 42.93 2.93
3280 8724 5.041287 TCACACAACAAAAACACGTTTGAA 58.959 33.333 4.77 0.00 40.29 2.69
3283 8727 5.692204 ACACAACAAAAACACGTTTGAATCA 59.308 32.000 4.77 0.00 40.29 2.57
3286 8730 7.061210 CACAACAAAAACACGTTTGAATCACTA 59.939 33.333 4.77 0.00 40.29 2.74
3288 8732 6.613233 ACAAAAACACGTTTGAATCACTACA 58.387 32.000 4.77 0.00 40.29 2.74
3289 8733 7.085116 ACAAAAACACGTTTGAATCACTACAA 58.915 30.769 4.77 0.00 40.29 2.41
3290 8734 7.272515 ACAAAAACACGTTTGAATCACTACAAG 59.727 33.333 4.77 0.00 40.29 3.16
3291 8735 5.418310 AACACGTTTGAATCACTACAAGG 57.582 39.130 0.00 0.00 0.00 3.61
3292 8736 4.699637 ACACGTTTGAATCACTACAAGGA 58.300 39.130 0.00 0.00 0.00 3.36
3294 8738 5.763204 ACACGTTTGAATCACTACAAGGATT 59.237 36.000 0.00 0.00 36.49 3.01
3295 8739 6.073222 ACACGTTTGAATCACTACAAGGATTC 60.073 38.462 7.28 7.28 46.04 2.52
3296 8740 6.147821 CACGTTTGAATCACTACAAGGATTCT 59.852 38.462 13.55 0.00 46.03 2.40
3297 8741 6.147821 ACGTTTGAATCACTACAAGGATTCTG 59.852 38.462 13.55 5.81 46.03 3.02
3298 8742 6.402550 CGTTTGAATCACTACAAGGATTCTGG 60.403 42.308 13.55 0.00 46.03 3.86
3299 8743 5.762179 TGAATCACTACAAGGATTCTGGT 57.238 39.130 13.55 0.00 46.03 4.00
3300 8744 5.734720 TGAATCACTACAAGGATTCTGGTC 58.265 41.667 13.55 0.00 46.03 4.02
3301 8745 5.485353 TGAATCACTACAAGGATTCTGGTCT 59.515 40.000 13.55 0.00 46.03 3.85
3302 8746 6.667848 TGAATCACTACAAGGATTCTGGTCTA 59.332 38.462 13.55 0.00 46.03 2.59
3303 8747 7.345653 TGAATCACTACAAGGATTCTGGTCTAT 59.654 37.037 13.55 0.00 46.03 1.98
3305 8749 6.878317 TCACTACAAGGATTCTGGTCTATTG 58.122 40.000 0.00 0.00 0.00 1.90
3306 8750 5.525378 CACTACAAGGATTCTGGTCTATTGC 59.475 44.000 0.00 0.00 0.00 3.56
3307 8751 4.574674 ACAAGGATTCTGGTCTATTGCA 57.425 40.909 0.00 0.00 0.00 4.08
3308 8752 4.922206 ACAAGGATTCTGGTCTATTGCAA 58.078 39.130 0.00 0.00 0.00 4.08
3309 8753 4.702131 ACAAGGATTCTGGTCTATTGCAAC 59.298 41.667 0.00 0.00 0.00 4.17
3316 8760 7.603784 GGATTCTGGTCTATTGCAACAAAATTT 59.396 33.333 0.00 0.00 0.00 1.82
3317 8761 9.638239 GATTCTGGTCTATTGCAACAAAATTTA 57.362 29.630 0.00 0.00 0.00 1.40
3319 8763 9.995003 TTCTGGTCTATTGCAACAAAATTTATT 57.005 25.926 0.00 0.00 0.00 1.40
3320 8764 9.421806 TCTGGTCTATTGCAACAAAATTTATTG 57.578 29.630 0.00 9.66 36.37 1.90
3330 8774 7.634522 GCAACAAAATTTATTGCTACAACCAA 58.365 30.769 23.29 0.00 44.26 3.67
3331 8775 7.798052 GCAACAAAATTTATTGCTACAACCAAG 59.202 33.333 23.29 0.00 44.26 3.61
3333 8777 7.505258 ACAAAATTTATTGCTACAACCAAGGT 58.495 30.769 0.00 0.00 33.52 3.50
3334 8778 7.990314 ACAAAATTTATTGCTACAACCAAGGTT 59.010 29.630 0.00 0.00 34.69 3.50
3335 8779 8.835439 CAAAATTTATTGCTACAACCAAGGTTT 58.165 29.630 0.79 0.00 36.00 3.27
3336 8780 7.961325 AATTTATTGCTACAACCAAGGTTTG 57.039 32.000 0.79 1.27 36.00 2.93
3337 8781 6.472686 TTTATTGCTACAACCAAGGTTTGT 57.527 33.333 0.79 6.97 36.00 2.83
3340 8784 2.159170 TGCTACAACCAAGGTTTGTTGC 60.159 45.455 21.30 21.30 37.79 4.17
3342 8786 3.677424 GCTACAACCAAGGTTTGTTGCAA 60.677 43.478 22.22 0.00 37.55 4.08
3343 8787 3.625649 ACAACCAAGGTTTGTTGCAAT 57.374 38.095 0.59 0.00 36.00 3.56
3346 8790 5.491982 ACAACCAAGGTTTGTTGCAATAAA 58.508 33.333 16.34 16.34 36.00 1.40
3347 8791 5.940470 ACAACCAAGGTTTGTTGCAATAAAA 59.060 32.000 21.03 13.32 36.00 1.52
3348 8792 6.128145 ACAACCAAGGTTTGTTGCAATAAAAC 60.128 34.615 24.40 24.40 36.00 2.43
3349 8793 4.568760 ACCAAGGTTTGTTGCAATAAAACG 59.431 37.500 25.08 16.34 35.18 3.60
3350 8794 4.513581 CAAGGTTTGTTGCAATAAAACGC 58.486 39.130 25.08 18.85 35.18 4.84
3352 8796 4.184629 AGGTTTGTTGCAATAAAACGCAA 58.815 34.783 25.08 10.87 45.45 4.85
3363 8807 7.090808 TGCAATAAAACGCAATATTACCACAA 58.909 30.769 0.00 0.00 34.59 3.33
3364 8808 7.598869 TGCAATAAAACGCAATATTACCACAAA 59.401 29.630 0.00 0.00 34.59 2.83
3369 8813 8.460831 AAAACGCAATATTACCACAAATTCTC 57.539 30.769 0.00 0.00 0.00 2.87
3370 8814 6.131544 ACGCAATATTACCACAAATTCTCC 57.868 37.500 0.00 0.00 0.00 3.71
3371 8815 5.204833 CGCAATATTACCACAAATTCTCCG 58.795 41.667 0.00 0.00 0.00 4.63
3374 8818 6.405397 GCAATATTACCACAAATTCTCCGGTT 60.405 38.462 0.00 0.00 0.00 4.44
3375 8819 6.693315 ATATTACCACAAATTCTCCGGTTG 57.307 37.500 0.00 0.00 0.00 3.77
3376 8820 2.358322 ACCACAAATTCTCCGGTTGT 57.642 45.000 0.00 0.58 35.91 3.32
3378 8822 2.704725 CACAAATTCTCCGGTTGTGG 57.295 50.000 21.29 7.93 45.35 4.17
3380 8824 3.142951 CACAAATTCTCCGGTTGTGGTA 58.857 45.455 21.29 0.00 45.35 3.25
3381 8825 3.566322 CACAAATTCTCCGGTTGTGGTAA 59.434 43.478 21.29 0.96 45.35 2.85
3382 8826 4.217550 CACAAATTCTCCGGTTGTGGTAAT 59.782 41.667 21.29 2.96 45.35 1.89
3383 8827 5.413213 CACAAATTCTCCGGTTGTGGTAATA 59.587 40.000 21.29 0.00 45.35 0.98
3384 8828 5.646360 ACAAATTCTCCGGTTGTGGTAATAG 59.354 40.000 6.59 0.00 34.28 1.73
3385 8829 3.899052 TTCTCCGGTTGTGGTAATAGG 57.101 47.619 0.00 0.00 0.00 2.57
3387 8831 0.542805 TCCGGTTGTGGTAATAGGCC 59.457 55.000 0.00 0.00 0.00 5.19
3388 8832 0.812412 CCGGTTGTGGTAATAGGCCG 60.812 60.000 0.00 0.00 37.72 6.13
3389 8833 1.433837 CGGTTGTGGTAATAGGCCGC 61.434 60.000 0.00 0.00 37.06 6.53
3390 8834 0.393267 GGTTGTGGTAATAGGCCGCA 60.393 55.000 0.00 0.00 43.84 5.69
3391 8835 0.730840 GTTGTGGTAATAGGCCGCAC 59.269 55.000 0.00 0.00 45.00 5.34
3392 8836 0.325272 TTGTGGTAATAGGCCGCACA 59.675 50.000 0.00 0.00 45.00 4.57
3393 8837 0.544223 TGTGGTAATAGGCCGCACAT 59.456 50.000 0.00 0.00 41.07 3.21
3395 8839 2.370519 TGTGGTAATAGGCCGCACATAT 59.629 45.455 0.00 0.00 41.07 1.78
3397 8841 3.188460 GTGGTAATAGGCCGCACATATTG 59.812 47.826 0.00 0.00 36.58 1.90
3411 8855 6.391227 GCACATATTGCCATAACCTAGTTT 57.609 37.500 0.00 0.00 46.63 2.66
3412 8856 6.208644 GCACATATTGCCATAACCTAGTTTG 58.791 40.000 0.00 0.00 46.63 2.93
3413 8857 6.735694 GCACATATTGCCATAACCTAGTTTGG 60.736 42.308 0.00 0.00 46.63 3.28
3415 8859 6.546034 ACATATTGCCATAACCTAGTTTGGTC 59.454 38.462 9.09 4.68 39.83 4.02
3416 8860 4.374689 TTGCCATAACCTAGTTTGGTCA 57.625 40.909 9.09 6.33 39.83 4.02
3417 8861 3.681593 TGCCATAACCTAGTTTGGTCAC 58.318 45.455 9.09 0.00 39.83 3.67
3419 8863 3.618019 GCCATAACCTAGTTTGGTCACGA 60.618 47.826 0.00 0.00 39.83 4.35
3420 8864 4.766375 CCATAACCTAGTTTGGTCACGAT 58.234 43.478 0.00 0.00 39.83 3.73
3422 8866 6.342906 CCATAACCTAGTTTGGTCACGATAA 58.657 40.000 0.00 0.00 39.83 1.75
3423 8867 6.819649 CCATAACCTAGTTTGGTCACGATAAA 59.180 38.462 0.00 0.00 39.83 1.40
3424 8868 7.497909 CCATAACCTAGTTTGGTCACGATAAAT 59.502 37.037 0.00 0.00 39.83 1.40
3426 8870 7.838771 AACCTAGTTTGGTCACGATAAATAC 57.161 36.000 0.00 0.00 39.83 1.89
3427 8871 7.179076 ACCTAGTTTGGTCACGATAAATACT 57.821 36.000 0.00 0.00 34.86 2.12
3428 8872 8.297470 ACCTAGTTTGGTCACGATAAATACTA 57.703 34.615 0.00 0.00 34.86 1.82
3430 8874 9.590451 CCTAGTTTGGTCACGATAAATACTAAA 57.410 33.333 0.00 0.00 0.00 1.85
3438 8882 9.006215 GGTCACGATAAATACTAAATTTGTTGC 57.994 33.333 0.00 0.00 0.00 4.17
3439 8883 9.549509 GTCACGATAAATACTAAATTTGTTGCA 57.450 29.630 0.00 0.00 0.00 4.08
3447 8891 5.084818 ACTAAATTTGTTGCAATAGGGGC 57.915 39.130 0.59 0.00 0.00 5.80
3448 8892 3.348647 AAATTTGTTGCAATAGGGGCC 57.651 42.857 0.59 0.00 0.00 5.80
3449 8893 2.252535 ATTTGTTGCAATAGGGGCCT 57.747 45.000 0.59 0.00 0.00 5.19
3450 8894 1.555967 TTTGTTGCAATAGGGGCCTC 58.444 50.000 0.59 0.00 0.00 4.70
3454 8898 2.446666 TGTTGCAATAGGGGCCTCATAT 59.553 45.455 4.79 0.00 0.00 1.78
3456 8900 3.159213 TGCAATAGGGGCCTCATATTG 57.841 47.619 23.26 23.26 46.78 1.90
3459 8903 3.499338 CAATAGGGGCCTCATATTGCAA 58.501 45.455 18.98 0.00 41.29 4.08
3460 8904 2.656947 TAGGGGCCTCATATTGCAAC 57.343 50.000 4.79 0.00 0.00 4.17
3461 8905 0.466189 AGGGGCCTCATATTGCAACG 60.466 55.000 4.79 0.00 0.00 4.10
3466 8910 3.202906 GGCCTCATATTGCAACGAAGTA 58.797 45.455 0.00 0.00 45.00 2.24
3467 8911 3.815401 GGCCTCATATTGCAACGAAGTAT 59.185 43.478 0.00 0.00 45.00 2.12
3468 8912 4.319766 GGCCTCATATTGCAACGAAGTATG 60.320 45.833 0.00 5.96 45.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.143183 GGACATCCGCCATGTACGT 59.857 57.895 0.00 0.00 46.53 3.57
84 85 4.905456 TCGTCTAGGTATCCAAAATCCCAT 59.095 41.667 0.00 0.00 0.00 4.00
103 104 7.007099 GTGGTCATAAATTTGTTCGAATTCGTC 59.993 37.037 25.93 19.64 40.80 4.20
106 107 7.807907 ACTGTGGTCATAAATTTGTTCGAATTC 59.192 33.333 0.00 0.00 0.00 2.17
113 114 6.695278 CGTTCAACTGTGGTCATAAATTTGTT 59.305 34.615 0.00 0.00 0.00 2.83
122 123 3.478857 TTACCGTTCAACTGTGGTCAT 57.521 42.857 0.00 0.00 35.93 3.06
123 124 2.983907 TTACCGTTCAACTGTGGTCA 57.016 45.000 0.00 0.00 35.93 4.02
124 125 4.619437 TTTTTACCGTTCAACTGTGGTC 57.381 40.909 0.00 0.00 35.93 4.02
172 183 3.129287 ACTTCAATGCGGATCATCAAACC 59.871 43.478 0.00 0.00 33.40 3.27
173 184 4.361451 ACTTCAATGCGGATCATCAAAC 57.639 40.909 0.00 0.00 33.40 2.93
220 231 3.886505 ACAATTGTTCCCTTTTCTGCGTA 59.113 39.130 4.92 0.00 0.00 4.42
271 282 8.739039 TCATTCTTGTCCAGGTTAATTAATGTG 58.261 33.333 0.31 2.42 0.00 3.21
321 1609 4.767255 GCGGTCTGGCCTGACTGG 62.767 72.222 37.89 29.46 42.06 4.00
370 1658 7.519002 AGTCAACTATTCAAACTGTTATTCGC 58.481 34.615 0.00 0.00 0.00 4.70
374 1662 8.932791 CGGTAAGTCAACTATTCAAACTGTTAT 58.067 33.333 0.00 0.00 0.00 1.89
375 1663 7.385752 CCGGTAAGTCAACTATTCAAACTGTTA 59.614 37.037 0.00 0.00 0.00 2.41
378 1666 5.121768 CCCGGTAAGTCAACTATTCAAACTG 59.878 44.000 0.00 0.00 0.00 3.16
380 1668 4.142752 GCCCGGTAAGTCAACTATTCAAAC 60.143 45.833 0.00 0.00 0.00 2.93
381 1669 4.004982 GCCCGGTAAGTCAACTATTCAAA 58.995 43.478 0.00 0.00 0.00 2.69
382 1670 3.602483 GCCCGGTAAGTCAACTATTCAA 58.398 45.455 0.00 0.00 0.00 2.69
383 1671 2.417651 CGCCCGGTAAGTCAACTATTCA 60.418 50.000 0.00 0.00 0.00 2.57
384 1672 2.199236 CGCCCGGTAAGTCAACTATTC 58.801 52.381 0.00 0.00 0.00 1.75
385 1673 1.551883 ACGCCCGGTAAGTCAACTATT 59.448 47.619 0.00 0.00 0.00 1.73
386 1674 1.135721 GACGCCCGGTAAGTCAACTAT 59.864 52.381 13.97 0.00 35.19 2.12
388 1676 1.291272 GACGCCCGGTAAGTCAACT 59.709 57.895 13.97 0.00 35.19 3.16
389 1677 1.005867 TGACGCCCGGTAAGTCAAC 60.006 57.895 17.76 0.00 41.30 3.18
394 1938 0.675522 AATTGGTGACGCCCGGTAAG 60.676 55.000 0.00 0.00 36.04 2.34
416 1960 2.125147 ATGGATGGGTGACACGCG 60.125 61.111 16.82 3.53 33.25 6.01
470 2014 0.326927 ACCACCTATTTGGACACCGG 59.673 55.000 0.00 0.00 39.24 5.28
487 2031 5.340439 AGTCCTTACTATTACAGCACACC 57.660 43.478 0.00 0.00 32.84 4.16
552 2097 4.001618 TCATTGGACATGAGAACAACGA 57.998 40.909 0.00 0.00 0.00 3.85
649 2195 4.063689 AGAGTCACAAGAGCATGAACTTG 58.936 43.478 21.96 21.96 45.85 3.16
673 2219 1.271840 TGGTTCTTCTCCCCGGATGG 61.272 60.000 0.73 0.00 0.00 3.51
724 2271 2.348666 CGCCATGCAAACTACAGTAGAC 59.651 50.000 14.94 1.76 0.00 2.59
727 2274 2.073056 CACGCCATGCAAACTACAGTA 58.927 47.619 0.00 0.00 0.00 2.74
728 2275 0.874390 CACGCCATGCAAACTACAGT 59.126 50.000 0.00 0.00 0.00 3.55
729 2276 3.681705 CACGCCATGCAAACTACAG 57.318 52.632 0.00 0.00 0.00 2.74
766 2313 1.696884 GCACCCAATCCCTTCCAAAAA 59.303 47.619 0.00 0.00 0.00 1.94
767 2314 1.347062 GCACCCAATCCCTTCCAAAA 58.653 50.000 0.00 0.00 0.00 2.44
768 2315 0.544120 GGCACCCAATCCCTTCCAAA 60.544 55.000 0.00 0.00 0.00 3.28
769 2316 1.078347 GGCACCCAATCCCTTCCAA 59.922 57.895 0.00 0.00 0.00 3.53
770 2317 1.442886 AAGGCACCCAATCCCTTCCA 61.443 55.000 0.00 0.00 33.88 3.53
771 2318 0.629058 TAAGGCACCCAATCCCTTCC 59.371 55.000 0.00 0.00 39.54 3.46
775 2322 1.762370 CCAATTAAGGCACCCAATCCC 59.238 52.381 0.00 0.00 0.00 3.85
894 2450 8.984855 TGCTACCAACTACCAACTACTAATTAT 58.015 33.333 0.00 0.00 0.00 1.28
895 2451 8.365060 TGCTACCAACTACCAACTACTAATTA 57.635 34.615 0.00 0.00 0.00 1.40
896 2452 7.248743 TGCTACCAACTACCAACTACTAATT 57.751 36.000 0.00 0.00 0.00 1.40
898 2454 6.669125 TTGCTACCAACTACCAACTACTAA 57.331 37.500 0.00 0.00 0.00 2.24
900 2456 5.757099 ATTGCTACCAACTACCAACTACT 57.243 39.130 0.00 0.00 32.95 2.57
924 3895 6.809196 CCGGTCTTAGATATAGCAACTGATTC 59.191 42.308 0.00 0.00 0.00 2.52
934 3905 6.057321 AGGAGAGACCGGTCTTAGATATAG 57.943 45.833 36.55 0.00 44.74 1.31
940 3911 2.018515 GTGAGGAGAGACCGGTCTTAG 58.981 57.143 36.55 0.00 44.74 2.18
988 3974 3.961480 TGAACTCATGGTGTCGAATCT 57.039 42.857 0.00 0.00 0.00 2.40
990 3976 4.186926 CTGATGAACTCATGGTGTCGAAT 58.813 43.478 0.00 0.00 36.57 3.34
1050 4036 3.451178 TGATGGCTAGGAAGTTGTCTACC 59.549 47.826 0.00 0.00 0.00 3.18
1190 4179 0.320683 CATGGTGAGTGCGGAGACAA 60.321 55.000 0.00 0.00 0.00 3.18
1197 4186 5.513141 CGATATTAGATACATGGTGAGTGCG 59.487 44.000 0.00 0.00 0.00 5.34
1201 4190 5.037385 CCGCGATATTAGATACATGGTGAG 58.963 45.833 8.23 0.00 0.00 3.51
1315 4304 3.064931 CCTCGTTGAAAGTGGGTACTTC 58.935 50.000 0.00 0.00 46.14 3.01
1318 4307 1.609841 CCCCTCGTTGAAAGTGGGTAC 60.610 57.143 15.27 0.00 39.97 3.34
1404 4393 2.518587 GGGATGTAAAGGGCCGGC 60.519 66.667 21.18 21.18 0.00 6.13
1422 4411 2.667318 CGTGCAGTACTTGTGCGGG 61.667 63.158 0.00 0.00 44.35 6.13
1902 4891 3.090037 CTCCTGGTATATGGACCGGTAG 58.910 54.545 7.34 0.00 43.45 3.18
2148 5140 4.082523 ATGACCGCTGACCCACCG 62.083 66.667 0.00 0.00 0.00 4.94
2157 5149 2.267681 GAACCTCGTCGATGACCGCT 62.268 60.000 2.39 0.00 38.37 5.52
2435 5427 5.278957 GGCTTTGCTTTTGGAGACTTAATCA 60.279 40.000 0.00 0.00 0.00 2.57
2456 5448 0.810031 CACTACTTATTGCCGCGGCT 60.810 55.000 45.79 31.94 42.51 5.52
2491 6510 6.602803 ACATGCACACACATTAAGAATATCCA 59.397 34.615 0.00 0.00 0.00 3.41
2498 6517 5.472820 TCAATCACATGCACACACATTAAGA 59.527 36.000 0.00 0.00 0.00 2.10
2504 6523 4.037684 TGAATTCAATCACATGCACACACA 59.962 37.500 5.45 0.00 0.00 3.72
2505 6524 4.548494 TGAATTCAATCACATGCACACAC 58.452 39.130 5.45 0.00 0.00 3.82
2512 6531 5.257082 TGGAGCATGAATTCAATCACATG 57.743 39.130 13.09 6.17 41.72 3.21
2513 6532 5.394883 GGTTGGAGCATGAATTCAATCACAT 60.395 40.000 13.09 0.00 30.82 3.21
2556 6575 8.820933 CATGTTGAAATATATTGTCTGTCGAGT 58.179 33.333 0.00 0.00 0.00 4.18
2557 6576 8.820933 ACATGTTGAAATATATTGTCTGTCGAG 58.179 33.333 0.00 0.00 0.00 4.04
2558 6577 8.603181 CACATGTTGAAATATATTGTCTGTCGA 58.397 33.333 0.00 0.00 0.00 4.20
2559 6578 8.390354 ACACATGTTGAAATATATTGTCTGTCG 58.610 33.333 0.00 0.00 0.00 4.35
2586 6613 8.783093 CACCAGTGAGTCATTATCTTTTACAAA 58.217 33.333 0.00 0.00 0.00 2.83
2595 6963 5.237815 TGACAACACCAGTGAGTCATTATC 58.762 41.667 19.31 0.08 40.84 1.75
2598 6966 3.558931 TGACAACACCAGTGAGTCATT 57.441 42.857 19.31 0.00 40.84 2.57
2599 6967 3.777106 ATGACAACACCAGTGAGTCAT 57.223 42.857 24.30 24.30 45.08 3.06
2605 6973 3.784338 AGCAAAAATGACAACACCAGTG 58.216 40.909 0.00 0.00 0.00 3.66
2607 6975 4.431809 TGAAGCAAAAATGACAACACCAG 58.568 39.130 0.00 0.00 0.00 4.00
2608 6976 4.462508 TGAAGCAAAAATGACAACACCA 57.537 36.364 0.00 0.00 0.00 4.17
2707 7075 2.084546 AGCAAACGATGGCTTTACCTC 58.915 47.619 0.00 0.00 36.92 3.85
2748 7116 7.096640 CGATTTTATTATCCCATTGCAACGAAC 60.097 37.037 0.00 0.00 0.00 3.95
2873 7241 4.641541 CCCATTGTGAGCATGTTAGAATGA 59.358 41.667 13.46 0.00 0.00 2.57
2923 7292 9.856162 TTAAAGTTGAAGTAAATTACTCACCCT 57.144 29.630 6.09 0.00 38.26 4.34
2934 7303 9.233649 TGAAACTGACCTTAAAGTTGAAGTAAA 57.766 29.630 0.00 0.00 36.75 2.01
2935 7304 8.795842 TGAAACTGACCTTAAAGTTGAAGTAA 57.204 30.769 0.00 0.00 36.75 2.24
2936 7305 8.795842 TTGAAACTGACCTTAAAGTTGAAGTA 57.204 30.769 0.00 0.00 36.75 2.24
2937 7306 7.696992 TTGAAACTGACCTTAAAGTTGAAGT 57.303 32.000 0.00 0.00 36.75 3.01
2938 7307 8.405531 TCATTGAAACTGACCTTAAAGTTGAAG 58.594 33.333 0.00 0.00 36.75 3.02
2939 7308 8.188139 GTCATTGAAACTGACCTTAAAGTTGAA 58.812 33.333 0.00 0.00 37.61 2.69
2940 7309 7.338196 TGTCATTGAAACTGACCTTAAAGTTGA 59.662 33.333 1.37 0.00 41.87 3.18
2941 7310 7.479980 TGTCATTGAAACTGACCTTAAAGTTG 58.520 34.615 1.37 0.00 41.87 3.16
2942 7311 7.556275 TCTGTCATTGAAACTGACCTTAAAGTT 59.444 33.333 1.37 0.00 41.87 2.66
2943 7312 7.012421 GTCTGTCATTGAAACTGACCTTAAAGT 59.988 37.037 1.37 0.00 41.87 2.66
2944 7313 7.355778 GTCTGTCATTGAAACTGACCTTAAAG 58.644 38.462 1.37 0.00 41.87 1.85
2945 7314 6.018262 CGTCTGTCATTGAAACTGACCTTAAA 60.018 38.462 8.80 0.00 41.87 1.52
2946 7315 5.465390 CGTCTGTCATTGAAACTGACCTTAA 59.535 40.000 8.80 0.00 41.87 1.85
2947 7316 4.988540 CGTCTGTCATTGAAACTGACCTTA 59.011 41.667 8.80 0.00 41.87 2.69
2948 7317 3.809832 CGTCTGTCATTGAAACTGACCTT 59.190 43.478 8.80 0.00 41.87 3.50
2949 7318 3.069586 TCGTCTGTCATTGAAACTGACCT 59.930 43.478 8.80 0.00 41.87 3.85
2950 7319 3.390135 TCGTCTGTCATTGAAACTGACC 58.610 45.455 8.80 0.00 41.87 4.02
2951 7320 5.403897 TTTCGTCTGTCATTGAAACTGAC 57.596 39.130 0.00 0.00 42.68 3.51
2952 7321 6.429791 TTTTTCGTCTGTCATTGAAACTGA 57.570 33.333 0.00 0.00 30.66 3.41
2953 7322 7.431960 TGAATTTTTCGTCTGTCATTGAAACTG 59.568 33.333 0.00 0.00 30.66 3.16
2954 7323 7.479980 TGAATTTTTCGTCTGTCATTGAAACT 58.520 30.769 0.00 0.00 30.66 2.66
2955 7324 7.643764 TCTGAATTTTTCGTCTGTCATTGAAAC 59.356 33.333 0.00 0.00 30.66 2.78
2956 7325 7.702386 TCTGAATTTTTCGTCTGTCATTGAAA 58.298 30.769 0.00 0.00 0.00 2.69
2957 7326 7.226523 TCTCTGAATTTTTCGTCTGTCATTGAA 59.773 33.333 0.00 0.00 0.00 2.69
2958 7327 6.705825 TCTCTGAATTTTTCGTCTGTCATTGA 59.294 34.615 0.00 0.00 0.00 2.57
2959 7328 6.891624 TCTCTGAATTTTTCGTCTGTCATTG 58.108 36.000 0.00 0.00 0.00 2.82
2960 7329 7.496529 TTCTCTGAATTTTTCGTCTGTCATT 57.503 32.000 0.00 0.00 0.00 2.57
2961 7330 7.012327 TGTTTCTCTGAATTTTTCGTCTGTCAT 59.988 33.333 0.00 0.00 0.00 3.06
2962 7331 6.315144 TGTTTCTCTGAATTTTTCGTCTGTCA 59.685 34.615 0.00 0.00 0.00 3.58
2963 7332 6.715464 TGTTTCTCTGAATTTTTCGTCTGTC 58.285 36.000 0.00 0.00 0.00 3.51
2964 7333 6.677781 TGTTTCTCTGAATTTTTCGTCTGT 57.322 33.333 0.00 0.00 0.00 3.41
2965 7334 8.566008 AATTGTTTCTCTGAATTTTTCGTCTG 57.434 30.769 0.00 0.00 0.00 3.51
3001 7370 3.181491 CGCCTTCCACAAGTGAAGAAAAA 60.181 43.478 0.94 0.00 0.00 1.94
3002 7371 2.357637 CGCCTTCCACAAGTGAAGAAAA 59.642 45.455 0.94 0.00 0.00 2.29
3003 7372 1.946768 CGCCTTCCACAAGTGAAGAAA 59.053 47.619 0.94 0.00 0.00 2.52
3004 7373 1.593196 CGCCTTCCACAAGTGAAGAA 58.407 50.000 0.94 0.00 0.00 2.52
3005 7374 0.250295 CCGCCTTCCACAAGTGAAGA 60.250 55.000 0.94 0.00 0.00 2.87
3006 7375 1.237285 CCCGCCTTCCACAAGTGAAG 61.237 60.000 0.94 4.05 0.00 3.02
3007 7376 1.228124 CCCGCCTTCCACAAGTGAA 60.228 57.895 0.94 0.00 0.00 3.18
3008 7377 2.429930 CCCGCCTTCCACAAGTGA 59.570 61.111 0.94 0.00 0.00 3.41
3009 7378 2.672996 CCCCGCCTTCCACAAGTG 60.673 66.667 0.00 0.00 0.00 3.16
3010 7379 3.175710 ACCCCGCCTTCCACAAGT 61.176 61.111 0.00 0.00 0.00 3.16
3011 7380 2.672996 CACCCCGCCTTCCACAAG 60.673 66.667 0.00 0.00 0.00 3.16
3012 7381 4.278513 CCACCCCGCCTTCCACAA 62.279 66.667 0.00 0.00 0.00 3.33
3015 7384 4.660611 TACCCACCCCGCCTTCCA 62.661 66.667 0.00 0.00 0.00 3.53
3016 7385 2.619941 GATTACCCACCCCGCCTTCC 62.620 65.000 0.00 0.00 0.00 3.46
3017 7386 1.153025 GATTACCCACCCCGCCTTC 60.153 63.158 0.00 0.00 0.00 3.46
3018 7387 0.326808 TAGATTACCCACCCCGCCTT 60.327 55.000 0.00 0.00 0.00 4.35
3019 7388 1.052694 GTAGATTACCCACCCCGCCT 61.053 60.000 0.00 0.00 0.00 5.52
3020 7389 1.052694 AGTAGATTACCCACCCCGCC 61.053 60.000 0.00 0.00 0.00 6.13
3021 7390 0.835276 AAGTAGATTACCCACCCCGC 59.165 55.000 0.00 0.00 0.00 6.13
3022 7391 2.112998 TGAAGTAGATTACCCACCCCG 58.887 52.381 0.00 0.00 0.00 5.73
3035 7404 6.590234 AAACTGCCCCTAAAATTGAAGTAG 57.410 37.500 0.00 0.00 0.00 2.57
3146 7618 1.796796 GCACGGGCTCTTTTGCTAG 59.203 57.895 0.00 0.00 36.96 3.42
3147 7619 2.032634 CGCACGGGCTCTTTTGCTA 61.033 57.895 8.62 0.00 38.10 3.49
3148 7620 3.357079 CGCACGGGCTCTTTTGCT 61.357 61.111 8.62 0.00 38.10 3.91
3152 7624 2.725203 TAGCAACGCACGGGCTCTTT 62.725 55.000 8.62 0.00 39.01 2.52
3153 7625 3.234630 TAGCAACGCACGGGCTCTT 62.235 57.895 8.62 0.00 39.01 2.85
3154 7626 3.691342 TAGCAACGCACGGGCTCT 61.691 61.111 8.62 1.65 39.01 4.09
3155 7627 3.488090 GTAGCAACGCACGGGCTC 61.488 66.667 8.62 0.00 39.01 4.70
3166 7638 5.046878 TCTGTTATTTTCTCTCCCGTAGCAA 60.047 40.000 0.00 0.00 0.00 3.91
3167 7639 4.464951 TCTGTTATTTTCTCTCCCGTAGCA 59.535 41.667 0.00 0.00 0.00 3.49
3169 7641 5.035443 CGTCTGTTATTTTCTCTCCCGTAG 58.965 45.833 0.00 0.00 0.00 3.51
3170 7642 4.676196 GCGTCTGTTATTTTCTCTCCCGTA 60.676 45.833 0.00 0.00 0.00 4.02
3171 7643 3.846360 CGTCTGTTATTTTCTCTCCCGT 58.154 45.455 0.00 0.00 0.00 5.28
3172 7644 2.603560 GCGTCTGTTATTTTCTCTCCCG 59.396 50.000 0.00 0.00 0.00 5.14
3175 7647 6.020201 GCTAAGAGCGTCTGTTATTTTCTCTC 60.020 42.308 0.00 0.00 0.00 3.20
3176 7648 5.808030 GCTAAGAGCGTCTGTTATTTTCTCT 59.192 40.000 0.00 0.00 0.00 3.10
3180 7652 3.939592 GGGCTAAGAGCGTCTGTTATTTT 59.060 43.478 0.00 0.00 43.62 1.82
3182 7654 2.500098 TGGGCTAAGAGCGTCTGTTATT 59.500 45.455 0.00 0.00 43.62 1.40
3183 7655 2.108168 TGGGCTAAGAGCGTCTGTTAT 58.892 47.619 0.00 0.00 43.62 1.89
3184 7656 1.552578 TGGGCTAAGAGCGTCTGTTA 58.447 50.000 0.00 0.00 43.62 2.41
3185 7657 0.685097 TTGGGCTAAGAGCGTCTGTT 59.315 50.000 0.00 0.00 43.62 3.16
3186 7658 0.905357 ATTGGGCTAAGAGCGTCTGT 59.095 50.000 0.00 0.00 43.62 3.41
3187 7659 2.866762 GTTATTGGGCTAAGAGCGTCTG 59.133 50.000 0.00 0.00 43.62 3.51
3188 7660 2.158943 GGTTATTGGGCTAAGAGCGTCT 60.159 50.000 0.00 0.00 43.62 4.18
3191 7663 2.325583 TGGTTATTGGGCTAAGAGCG 57.674 50.000 0.00 0.00 43.62 5.03
3192 7664 3.555966 ACATGGTTATTGGGCTAAGAGC 58.444 45.455 0.00 0.00 41.46 4.09
3193 7665 5.041191 AGACATGGTTATTGGGCTAAGAG 57.959 43.478 0.00 0.00 0.00 2.85
3194 7666 4.473196 TGAGACATGGTTATTGGGCTAAGA 59.527 41.667 0.00 0.00 0.00 2.10
3195 7667 4.780815 TGAGACATGGTTATTGGGCTAAG 58.219 43.478 0.00 0.00 0.00 2.18
3196 7668 4.853468 TGAGACATGGTTATTGGGCTAA 57.147 40.909 0.00 0.00 0.00 3.09
3197 7669 4.473196 TCTTGAGACATGGTTATTGGGCTA 59.527 41.667 0.00 0.00 0.00 3.93
3198 7670 3.266772 TCTTGAGACATGGTTATTGGGCT 59.733 43.478 0.00 0.00 0.00 5.19
3199 7671 3.378427 GTCTTGAGACATGGTTATTGGGC 59.622 47.826 6.28 0.00 44.18 5.36
3200 7672 3.947834 GGTCTTGAGACATGGTTATTGGG 59.052 47.826 12.76 0.00 46.47 4.12
3201 7673 3.947834 GGGTCTTGAGACATGGTTATTGG 59.052 47.826 12.76 0.00 46.47 3.16
3202 7674 4.848357 AGGGTCTTGAGACATGGTTATTG 58.152 43.478 12.76 0.00 46.47 1.90
3204 7676 6.831664 ATTAGGGTCTTGAGACATGGTTAT 57.168 37.500 12.76 0.00 46.47 1.89
3205 7677 7.347222 ACATATTAGGGTCTTGAGACATGGTTA 59.653 37.037 12.76 0.57 46.47 2.85
3207 7679 5.667626 ACATATTAGGGTCTTGAGACATGGT 59.332 40.000 12.76 0.04 46.47 3.55
3208 7680 6.179906 ACATATTAGGGTCTTGAGACATGG 57.820 41.667 12.76 0.00 46.47 3.66
3209 7681 5.923114 CGACATATTAGGGTCTTGAGACATG 59.077 44.000 12.76 8.79 46.47 3.21
3210 7682 5.833667 TCGACATATTAGGGTCTTGAGACAT 59.166 40.000 12.76 3.88 46.47 3.06
3211 7683 5.198207 TCGACATATTAGGGTCTTGAGACA 58.802 41.667 12.76 0.00 46.47 3.41
3212 7684 5.769484 TCGACATATTAGGGTCTTGAGAC 57.231 43.478 2.51 2.51 44.04 3.36
3213 7685 5.833667 ACATCGACATATTAGGGTCTTGAGA 59.166 40.000 0.00 0.00 31.88 3.27
3214 7686 6.090483 ACATCGACATATTAGGGTCTTGAG 57.910 41.667 0.00 0.00 31.88 3.02
3215 7687 5.010719 GGACATCGACATATTAGGGTCTTGA 59.989 44.000 0.00 0.00 31.88 3.02
3216 7688 5.011125 AGGACATCGACATATTAGGGTCTTG 59.989 44.000 0.00 0.00 31.88 3.02
3218 7690 4.742012 AGGACATCGACATATTAGGGTCT 58.258 43.478 0.00 0.00 31.88 3.85
3220 7692 5.888982 AAAGGACATCGACATATTAGGGT 57.111 39.130 0.00 0.00 0.00 4.34
3221 7693 7.334421 CCAATAAAGGACATCGACATATTAGGG 59.666 40.741 0.00 0.00 0.00 3.53
3222 7694 7.148407 GCCAATAAAGGACATCGACATATTAGG 60.148 40.741 0.00 0.00 0.00 2.69
3223 7695 7.148407 GGCCAATAAAGGACATCGACATATTAG 60.148 40.741 0.00 0.00 36.38 1.73
3226 7698 5.003804 GGCCAATAAAGGACATCGACATAT 58.996 41.667 0.00 0.00 36.38 1.78
3228 7700 3.117888 AGGCCAATAAAGGACATCGACAT 60.118 43.478 5.01 0.00 40.05 3.06
3233 7705 3.629398 CACTGAGGCCAATAAAGGACATC 59.371 47.826 5.01 0.00 40.05 3.06
3235 7707 2.879756 GCACTGAGGCCAATAAAGGACA 60.880 50.000 5.01 0.00 40.05 4.02
3243 8687 0.607489 GTGTGAGCACTGAGGCCAAT 60.607 55.000 5.01 0.00 42.13 3.16
3250 8694 3.254411 TGTTTTTGTTGTGTGAGCACTGA 59.746 39.130 1.99 0.00 45.44 3.41
3251 8695 3.364621 GTGTTTTTGTTGTGTGAGCACTG 59.635 43.478 1.99 0.00 45.44 3.66
3252 8696 3.574614 GTGTTTTTGTTGTGTGAGCACT 58.425 40.909 1.99 0.00 45.44 4.40
3254 8698 2.030717 ACGTGTTTTTGTTGTGTGAGCA 60.031 40.909 0.00 0.00 0.00 4.26
3255 8699 2.591133 ACGTGTTTTTGTTGTGTGAGC 58.409 42.857 0.00 0.00 0.00 4.26
3258 8702 4.956034 TCAAACGTGTTTTTGTTGTGTG 57.044 36.364 0.00 0.00 37.66 3.82
3260 8704 6.006482 GTGATTCAAACGTGTTTTTGTTGTG 58.994 36.000 0.00 0.00 37.66 3.33
3263 8707 7.085116 TGTAGTGATTCAAACGTGTTTTTGTT 58.915 30.769 0.00 0.00 37.66 2.83
3264 8708 6.613233 TGTAGTGATTCAAACGTGTTTTTGT 58.387 32.000 0.00 0.00 37.66 2.83
3266 8710 6.750039 CCTTGTAGTGATTCAAACGTGTTTTT 59.250 34.615 0.00 0.00 0.00 1.94
3267 8711 6.094325 TCCTTGTAGTGATTCAAACGTGTTTT 59.906 34.615 0.00 0.00 0.00 2.43
3268 8712 5.587043 TCCTTGTAGTGATTCAAACGTGTTT 59.413 36.000 0.00 0.00 0.00 2.83
3269 8713 5.120399 TCCTTGTAGTGATTCAAACGTGTT 58.880 37.500 0.00 0.00 0.00 3.32
3270 8714 4.699637 TCCTTGTAGTGATTCAAACGTGT 58.300 39.130 0.00 0.00 0.00 4.49
3271 8715 5.862924 ATCCTTGTAGTGATTCAAACGTG 57.137 39.130 0.00 0.00 0.00 4.49
3272 8716 6.147821 CAGAATCCTTGTAGTGATTCAAACGT 59.852 38.462 13.02 0.00 45.94 3.99
3274 8718 6.431234 ACCAGAATCCTTGTAGTGATTCAAAC 59.569 38.462 13.02 0.00 45.94 2.93
3276 8720 6.013379 AGACCAGAATCCTTGTAGTGATTCAA 60.013 38.462 13.02 0.00 45.94 2.69
3277 8721 5.485353 AGACCAGAATCCTTGTAGTGATTCA 59.515 40.000 13.02 0.00 45.94 2.57
3278 8722 5.983540 AGACCAGAATCCTTGTAGTGATTC 58.016 41.667 4.48 4.48 44.58 2.52
3280 8724 7.504403 CAATAGACCAGAATCCTTGTAGTGAT 58.496 38.462 0.00 0.00 0.00 3.06
3283 8727 5.189736 TGCAATAGACCAGAATCCTTGTAGT 59.810 40.000 0.00 0.00 0.00 2.73
3286 8730 4.574674 TGCAATAGACCAGAATCCTTGT 57.425 40.909 0.00 0.00 0.00 3.16
3288 8732 4.922206 TGTTGCAATAGACCAGAATCCTT 58.078 39.130 0.59 0.00 0.00 3.36
3289 8733 4.574674 TGTTGCAATAGACCAGAATCCT 57.425 40.909 0.59 0.00 0.00 3.24
3290 8734 5.643379 TTTGTTGCAATAGACCAGAATCC 57.357 39.130 0.59 0.00 0.00 3.01
3291 8735 8.538409 AAATTTTGTTGCAATAGACCAGAATC 57.462 30.769 0.59 0.00 0.00 2.52
3294 8738 9.421806 CAATAAATTTTGTTGCAATAGACCAGA 57.578 29.630 0.59 0.00 0.00 3.86
3306 8750 8.281893 CCTTGGTTGTAGCAATAAATTTTGTTG 58.718 33.333 12.68 12.68 34.84 3.33
3307 8751 7.990314 ACCTTGGTTGTAGCAATAAATTTTGTT 59.010 29.630 0.00 0.00 34.84 2.83
3308 8752 7.505258 ACCTTGGTTGTAGCAATAAATTTTGT 58.495 30.769 0.00 0.00 34.84 2.83
3309 8753 7.961325 ACCTTGGTTGTAGCAATAAATTTTG 57.039 32.000 0.00 0.00 34.84 2.44
3316 8760 5.737635 GCAACAAACCTTGGTTGTAGCAATA 60.738 40.000 5.74 0.00 44.70 1.90
3317 8761 4.692228 CAACAAACCTTGGTTGTAGCAAT 58.308 39.130 5.74 0.00 38.24 3.56
3318 8762 3.677424 GCAACAAACCTTGGTTGTAGCAA 60.677 43.478 5.74 0.00 44.70 3.91
3319 8763 2.159170 GCAACAAACCTTGGTTGTAGCA 60.159 45.455 5.74 0.00 44.70 3.49
3320 8764 2.159170 TGCAACAAACCTTGGTTGTAGC 60.159 45.455 5.74 8.69 44.70 3.58
3321 8765 3.791973 TGCAACAAACCTTGGTTGTAG 57.208 42.857 5.74 2.61 44.70 2.74
3322 8766 4.744795 ATTGCAACAAACCTTGGTTGTA 57.255 36.364 0.00 0.35 44.70 2.41
3323 8767 3.625649 ATTGCAACAAACCTTGGTTGT 57.374 38.095 0.00 0.00 44.70 3.32
3324 8768 6.254480 GTTTTATTGCAACAAACCTTGGTTG 58.746 36.000 19.04 0.00 45.44 3.77
3325 8769 5.064071 CGTTTTATTGCAACAAACCTTGGTT 59.936 36.000 21.87 0.00 34.12 3.67
3326 8770 4.568760 CGTTTTATTGCAACAAACCTTGGT 59.431 37.500 21.87 0.00 34.12 3.67
3327 8771 4.551797 GCGTTTTATTGCAACAAACCTTGG 60.552 41.667 21.87 13.41 34.12 3.61
3330 8774 3.786635 TGCGTTTTATTGCAACAAACCT 58.213 36.364 21.87 2.54 38.34 3.50
3331 8775 4.522297 TTGCGTTTTATTGCAACAAACC 57.478 36.364 21.87 16.97 45.45 3.27
3343 8787 9.562583 GAGAATTTGTGGTAATATTGCGTTTTA 57.437 29.630 0.00 0.00 0.00 1.52
3346 8790 6.560711 GGAGAATTTGTGGTAATATTGCGTT 58.439 36.000 0.00 0.00 0.00 4.84
3347 8791 5.220777 CGGAGAATTTGTGGTAATATTGCGT 60.221 40.000 0.00 0.00 0.00 5.24
3348 8792 5.204833 CGGAGAATTTGTGGTAATATTGCG 58.795 41.667 0.00 0.00 0.00 4.85
3349 8793 5.067283 ACCGGAGAATTTGTGGTAATATTGC 59.933 40.000 9.46 0.00 0.00 3.56
3350 8794 6.693315 ACCGGAGAATTTGTGGTAATATTG 57.307 37.500 9.46 0.00 0.00 1.90
3352 8796 6.094881 CACAACCGGAGAATTTGTGGTAATAT 59.905 38.462 21.29 0.00 44.18 1.28
3354 8798 4.217550 CACAACCGGAGAATTTGTGGTAAT 59.782 41.667 21.29 0.00 44.18 1.89
3355 8799 3.566322 CACAACCGGAGAATTTGTGGTAA 59.434 43.478 21.29 0.00 44.18 2.85
3356 8800 3.142951 CACAACCGGAGAATTTGTGGTA 58.857 45.455 21.29 0.00 44.18 3.25
3358 8802 2.704725 CACAACCGGAGAATTTGTGG 57.295 50.000 21.29 7.93 44.18 4.17
3359 8803 1.953686 ACCACAACCGGAGAATTTGTG 59.046 47.619 21.83 21.83 46.39 3.33
3360 8804 2.358322 ACCACAACCGGAGAATTTGT 57.642 45.000 9.46 4.71 33.69 2.83
3363 8807 4.777463 CCTATTACCACAACCGGAGAATT 58.223 43.478 9.46 0.00 0.00 2.17
3364 8808 3.433173 GCCTATTACCACAACCGGAGAAT 60.433 47.826 9.46 0.00 0.00 2.40
3366 8810 1.483415 GCCTATTACCACAACCGGAGA 59.517 52.381 9.46 0.00 0.00 3.71
3367 8811 1.474498 GGCCTATTACCACAACCGGAG 60.474 57.143 9.46 1.96 0.00 4.63
3368 8812 0.542805 GGCCTATTACCACAACCGGA 59.457 55.000 9.46 0.00 0.00 5.14
3369 8813 0.812412 CGGCCTATTACCACAACCGG 60.812 60.000 0.00 0.00 35.63 5.28
3370 8814 1.433837 GCGGCCTATTACCACAACCG 61.434 60.000 0.00 0.00 41.97 4.44
3371 8815 0.393267 TGCGGCCTATTACCACAACC 60.393 55.000 0.00 0.00 0.00 3.77
3374 8818 0.544223 ATGTGCGGCCTATTACCACA 59.456 50.000 0.00 5.00 40.26 4.17
3375 8819 2.536761 TATGTGCGGCCTATTACCAC 57.463 50.000 0.00 0.00 0.00 4.16
3376 8820 3.407698 CAATATGTGCGGCCTATTACCA 58.592 45.455 0.00 0.00 0.00 3.25
3377 8821 2.161609 GCAATATGTGCGGCCTATTACC 59.838 50.000 0.00 0.00 45.10 2.85
3378 8822 3.471495 GCAATATGTGCGGCCTATTAC 57.529 47.619 0.00 0.00 45.10 1.89
3388 8832 9.030776 ACCAAACTAGGTTATGGCAATATGTGC 62.031 40.741 0.00 2.40 46.26 4.57
3389 8833 6.321181 ACCAAACTAGGTTATGGCAATATGTG 59.679 38.462 0.00 0.00 39.34 3.21
3390 8834 6.431722 ACCAAACTAGGTTATGGCAATATGT 58.568 36.000 0.00 0.00 39.34 2.29
3391 8835 6.545666 TGACCAAACTAGGTTATGGCAATATG 59.454 38.462 0.00 0.00 43.38 1.78
3392 8836 6.546034 GTGACCAAACTAGGTTATGGCAATAT 59.454 38.462 0.00 0.00 43.38 1.28
3393 8837 5.883673 GTGACCAAACTAGGTTATGGCAATA 59.116 40.000 0.00 0.00 43.38 1.90
3395 8839 4.076394 GTGACCAAACTAGGTTATGGCAA 58.924 43.478 0.00 0.00 43.38 4.52
3397 8841 2.676342 CGTGACCAAACTAGGTTATGGC 59.324 50.000 0.00 0.00 43.38 4.40
3398 8842 4.196626 TCGTGACCAAACTAGGTTATGG 57.803 45.455 0.00 0.00 43.38 2.74
3400 8844 9.538508 GTATTTATCGTGACCAAACTAGGTTAT 57.461 33.333 0.00 0.00 43.38 1.89
3401 8845 8.752187 AGTATTTATCGTGACCAAACTAGGTTA 58.248 33.333 0.00 0.00 43.38 2.85
3402 8846 7.618137 AGTATTTATCGTGACCAAACTAGGTT 58.382 34.615 0.00 0.00 43.38 3.50
3404 8848 9.590451 TTTAGTATTTATCGTGACCAAACTAGG 57.410 33.333 0.00 0.00 0.00 3.02
3412 8856 9.006215 GCAACAAATTTAGTATTTATCGTGACC 57.994 33.333 0.00 0.00 0.00 4.02
3413 8857 9.549509 TGCAACAAATTTAGTATTTATCGTGAC 57.450 29.630 0.00 0.00 0.00 3.67
3422 8866 7.272244 GCCCCTATTGCAACAAATTTAGTATT 58.728 34.615 0.00 0.00 0.00 1.89
3423 8867 6.183360 GGCCCCTATTGCAACAAATTTAGTAT 60.183 38.462 0.00 0.00 0.00 2.12
3424 8868 5.128008 GGCCCCTATTGCAACAAATTTAGTA 59.872 40.000 0.00 0.00 0.00 1.82
3426 8870 4.162131 AGGCCCCTATTGCAACAAATTTAG 59.838 41.667 0.00 0.00 0.00 1.85
3427 8871 4.100373 AGGCCCCTATTGCAACAAATTTA 58.900 39.130 0.00 0.00 0.00 1.40
3428 8872 2.912295 AGGCCCCTATTGCAACAAATTT 59.088 40.909 0.00 0.00 0.00 1.82
3430 8874 2.110578 GAGGCCCCTATTGCAACAAAT 58.889 47.619 0.00 0.00 0.00 2.32
3431 8875 1.203112 TGAGGCCCCTATTGCAACAAA 60.203 47.619 0.00 0.00 0.00 2.83
3433 8877 0.630673 ATGAGGCCCCTATTGCAACA 59.369 50.000 0.00 0.00 0.00 3.33
3434 8878 2.656947 TATGAGGCCCCTATTGCAAC 57.343 50.000 0.00 0.00 0.00 4.17
3435 8879 3.499338 CAATATGAGGCCCCTATTGCAA 58.501 45.455 0.00 0.00 0.00 4.08
3436 8880 3.159213 CAATATGAGGCCCCTATTGCA 57.841 47.619 13.55 0.00 0.00 4.08
3438 8882 3.159213 TGCAATATGAGGCCCCTATTG 57.841 47.619 18.52 18.52 36.42 1.90
3439 8883 3.500343 GTTGCAATATGAGGCCCCTATT 58.500 45.455 0.59 0.00 0.00 1.73
3440 8884 2.553028 CGTTGCAATATGAGGCCCCTAT 60.553 50.000 0.59 0.00 0.00 2.57
3441 8885 1.202758 CGTTGCAATATGAGGCCCCTA 60.203 52.381 0.59 0.00 0.00 3.53
3442 8886 0.466189 CGTTGCAATATGAGGCCCCT 60.466 55.000 0.59 0.00 0.00 4.79
3443 8887 0.465460 TCGTTGCAATATGAGGCCCC 60.465 55.000 0.59 0.00 0.00 5.80
3445 8889 2.017049 ACTTCGTTGCAATATGAGGCC 58.983 47.619 0.59 0.00 0.00 5.19
3447 8891 5.991328 ACATACTTCGTTGCAATATGAGG 57.009 39.130 19.08 13.03 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.