Multiple sequence alignment - TraesCS3D01G443800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G443800 chr3D 100.000 2550 0 0 1 2550 553177788 553180337 0.000000e+00 4710
1 TraesCS3D01G443800 chr3D 78.483 804 118 37 542 1321 553046127 553046899 2.300000e-130 475
2 TraesCS3D01G443800 chr3D 86.070 201 26 2 656 854 553046028 553046228 5.530000e-52 215
3 TraesCS3D01G443800 chr3D 82.828 198 29 5 2077 2270 478550505 478550309 3.370000e-39 172
4 TraesCS3D01G443800 chr3D 79.310 203 34 6 2329 2527 486862279 486862477 4.430000e-28 135
5 TraesCS3D01G443800 chr3D 79.310 203 34 6 2329 2527 486878479 486878677 4.430000e-28 135
6 TraesCS3D01G443800 chr3D 92.045 88 6 1 1 88 279883200 279883114 3.450000e-24 122
7 TraesCS3D01G443800 chr3D 90.909 88 8 0 1 88 165543255 165543168 4.460000e-23 119
8 TraesCS3D01G443800 chr3A 95.483 1594 67 4 959 2550 689400199 689401789 0.000000e+00 2540
9 TraesCS3D01G443800 chr3A 97.156 422 11 1 542 963 689389867 689390287 0.000000e+00 712
10 TraesCS3D01G443800 chr3A 85.593 236 24 4 636 871 689389823 689390048 3.280000e-59 239
11 TraesCS3D01G443800 chr3A 77.328 247 37 14 1 235 313182018 313181779 7.410000e-26 128
12 TraesCS3D01G443800 chrUn 78.731 804 116 41 542 1321 367929890 367929118 1.060000e-133 486
13 TraesCS3D01G443800 chrUn 86.364 198 25 2 659 854 367929986 367929789 5.530000e-52 215
14 TraesCS3D01G443800 chrUn 94.203 69 4 0 807 875 367929986 367929918 3.470000e-19 106
15 TraesCS3D01G443800 chr3B 78.027 801 123 31 542 1321 733901795 733902563 2.990000e-124 455
16 TraesCS3D01G443800 chr3B 83.000 200 29 4 656 854 733901700 733901895 2.610000e-40 176
17 TraesCS3D01G443800 chr3B 74.394 289 47 14 807 1086 734495130 734495400 5.810000e-17 99
18 TraesCS3D01G443800 chr1D 80.465 215 34 6 2329 2539 473203087 473202877 9.440000e-35 158
19 TraesCS3D01G443800 chr2D 81.818 187 29 3 2329 2514 323188742 323188924 4.390000e-33 152
20 TraesCS3D01G443800 chr2B 82.386 176 27 4 2067 2242 425144748 425144577 1.580000e-32 150
21 TraesCS3D01G443800 chr2B 90.217 92 7 1 1 90 553204402 553204493 4.460000e-23 119
22 TraesCS3D01G443800 chr5D 79.535 215 36 6 2329 2539 175932849 175932639 2.040000e-31 147
23 TraesCS3D01G443800 chr5D 79.535 215 36 6 2329 2539 302236109 302235899 2.040000e-31 147
24 TraesCS3D01G443800 chr5D 78.605 215 38 6 2329 2539 126843600 126843390 4.430000e-28 135
25 TraesCS3D01G443800 chr4D 79.070 215 37 5 2329 2539 243908042 243907832 9.510000e-30 141
26 TraesCS3D01G443800 chr1A 92.135 89 6 1 2 90 218305457 218305370 9.580000e-25 124
27 TraesCS3D01G443800 chr7A 75.433 289 52 16 2148 2427 4490298 4490020 3.450000e-24 122
28 TraesCS3D01G443800 chr6A 91.209 91 6 2 1 90 354884008 354883919 3.450000e-24 122
29 TraesCS3D01G443800 chr6A 90.909 88 7 1 1 88 164498243 164498329 1.600000e-22 117
30 TraesCS3D01G443800 chr4A 91.011 89 7 1 1 88 602085685 602085773 4.460000e-23 119
31 TraesCS3D01G443800 chr1B 90.909 88 7 1 1 88 552388622 552388536 1.600000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G443800 chr3D 553177788 553180337 2549 False 4710.0 4710 100.000000 1 2550 1 chr3D.!!$F3 2549
1 TraesCS3D01G443800 chr3D 553046028 553046899 871 False 345.0 475 82.276500 542 1321 2 chr3D.!!$F4 779
2 TraesCS3D01G443800 chr3A 689400199 689401789 1590 False 2540.0 2540 95.483000 959 2550 1 chr3A.!!$F1 1591
3 TraesCS3D01G443800 chrUn 367929118 367929986 868 True 269.0 486 86.432667 542 1321 3 chrUn.!!$R1 779
4 TraesCS3D01G443800 chr3B 733901700 733902563 863 False 315.5 455 80.513500 542 1321 2 chr3B.!!$F2 779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.033228 GCATCGTGAGAGGAGATGGG 59.967 60.0 6.77 0.0 46.52 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 2049 0.321564 CAAGGCATCCTCGTTGTGGA 60.322 55.0 0.0 0.0 38.06 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.796705 AAAAACTGTGCGCTACTAGTATTT 57.203 33.333 9.73 8.12 0.00 1.40
43 44 7.894376 AAAAACTGTGCGCTACTAGTATTTA 57.106 32.000 9.73 0.00 0.00 1.40
44 45 7.521509 AAAACTGTGCGCTACTAGTATTTAG 57.478 36.000 9.73 0.00 0.00 1.85
45 46 5.184340 ACTGTGCGCTACTAGTATTTAGG 57.816 43.478 9.73 0.00 0.00 2.69
46 47 4.885907 ACTGTGCGCTACTAGTATTTAGGA 59.114 41.667 9.73 0.00 0.00 2.94
47 48 5.535406 ACTGTGCGCTACTAGTATTTAGGAT 59.465 40.000 9.73 0.00 0.00 3.24
48 49 6.713903 ACTGTGCGCTACTAGTATTTAGGATA 59.286 38.462 9.73 0.00 0.00 2.59
49 50 6.906659 TGTGCGCTACTAGTATTTAGGATAC 58.093 40.000 9.73 0.00 0.00 2.24
66 67 5.702349 GGATACTAGTAGCGTGTGGTATT 57.298 43.478 11.81 0.00 0.00 1.89
67 68 6.808008 GGATACTAGTAGCGTGTGGTATTA 57.192 41.667 11.81 0.00 0.00 0.98
68 69 7.388460 GGATACTAGTAGCGTGTGGTATTAT 57.612 40.000 11.81 0.00 0.00 1.28
69 70 8.498054 GGATACTAGTAGCGTGTGGTATTATA 57.502 38.462 11.81 0.00 0.00 0.98
70 71 8.610896 GGATACTAGTAGCGTGTGGTATTATAG 58.389 40.741 11.81 0.00 0.00 1.31
71 72 9.376075 GATACTAGTAGCGTGTGGTATTATAGA 57.624 37.037 8.85 0.00 0.00 1.98
72 73 9.902684 ATACTAGTAGCGTGTGGTATTATAGAT 57.097 33.333 8.85 0.00 0.00 1.98
73 74 8.041829 ACTAGTAGCGTGTGGTATTATAGATG 57.958 38.462 0.00 0.00 0.00 2.90
74 75 5.710984 AGTAGCGTGTGGTATTATAGATGC 58.289 41.667 0.00 0.00 0.00 3.91
75 76 4.600692 AGCGTGTGGTATTATAGATGCA 57.399 40.909 0.00 0.00 0.00 3.96
76 77 5.152623 AGCGTGTGGTATTATAGATGCAT 57.847 39.130 0.00 0.00 0.00 3.96
77 78 5.551233 AGCGTGTGGTATTATAGATGCATT 58.449 37.500 0.00 0.00 0.00 3.56
78 79 6.697395 AGCGTGTGGTATTATAGATGCATTA 58.303 36.000 0.00 0.00 0.00 1.90
79 80 6.590292 AGCGTGTGGTATTATAGATGCATTAC 59.410 38.462 0.00 0.00 0.00 1.89
80 81 6.590292 GCGTGTGGTATTATAGATGCATTACT 59.410 38.462 0.00 0.00 0.00 2.24
81 82 7.758076 GCGTGTGGTATTATAGATGCATTACTA 59.242 37.037 0.00 0.00 0.00 1.82
82 83 9.073368 CGTGTGGTATTATAGATGCATTACTAC 57.927 37.037 0.00 7.06 0.00 2.73
92 93 5.990408 AGATGCATTACTACTATTTTGCGC 58.010 37.500 0.00 0.00 32.90 6.09
93 94 5.760253 AGATGCATTACTACTATTTTGCGCT 59.240 36.000 9.73 0.00 32.90 5.92
94 95 6.929049 AGATGCATTACTACTATTTTGCGCTA 59.071 34.615 9.73 0.00 32.90 4.26
95 96 6.281848 TGCATTACTACTATTTTGCGCTAC 57.718 37.500 9.73 0.00 32.90 3.58
96 97 6.046593 TGCATTACTACTATTTTGCGCTACT 58.953 36.000 9.73 0.00 32.90 2.57
97 98 7.204604 TGCATTACTACTATTTTGCGCTACTA 58.795 34.615 9.73 0.00 32.90 1.82
98 99 7.168637 TGCATTACTACTATTTTGCGCTACTAC 59.831 37.037 9.73 0.00 32.90 2.73
99 100 7.381678 GCATTACTACTATTTTGCGCTACTACT 59.618 37.037 9.73 0.00 0.00 2.57
100 101 9.888878 CATTACTACTATTTTGCGCTACTACTA 57.111 33.333 9.73 0.00 0.00 1.82
102 103 9.722056 TTACTACTATTTTGCGCTACTACTAAC 57.278 33.333 9.73 0.00 0.00 2.34
103 104 7.765307 ACTACTATTTTGCGCTACTACTAACA 58.235 34.615 9.73 0.00 0.00 2.41
104 105 8.411683 ACTACTATTTTGCGCTACTACTAACAT 58.588 33.333 9.73 0.00 0.00 2.71
105 106 9.245962 CTACTATTTTGCGCTACTACTAACATT 57.754 33.333 9.73 0.00 0.00 2.71
107 108 9.760077 ACTATTTTGCGCTACTACTAACATTAT 57.240 29.630 9.73 0.00 0.00 1.28
110 111 9.760077 ATTTTGCGCTACTACTAACATTATAGT 57.240 29.630 9.73 0.00 39.41 2.12
119 120 7.142306 CTACTAACATTATAGTAGGAGCGCA 57.858 40.000 11.47 0.00 46.08 6.09
120 121 6.591750 ACTAACATTATAGTAGGAGCGCAT 57.408 37.500 11.47 0.00 34.40 4.73
121 122 6.390721 ACTAACATTATAGTAGGAGCGCATG 58.609 40.000 11.47 2.47 34.40 4.06
122 123 4.193826 ACATTATAGTAGGAGCGCATGG 57.806 45.455 11.47 0.00 0.00 3.66
123 124 3.578716 ACATTATAGTAGGAGCGCATGGT 59.421 43.478 11.47 0.00 0.00 3.55
124 125 3.660501 TTATAGTAGGAGCGCATGGTG 57.339 47.619 11.47 0.00 0.00 4.17
125 126 0.681733 ATAGTAGGAGCGCATGGTGG 59.318 55.000 11.47 0.00 0.00 4.61
126 127 2.028125 TAGTAGGAGCGCATGGTGGC 62.028 60.000 11.47 0.00 0.00 5.01
127 128 3.398310 TAGGAGCGCATGGTGGCA 61.398 61.111 11.47 0.00 0.00 4.92
128 129 2.745308 TAGGAGCGCATGGTGGCAT 61.745 57.895 11.47 0.00 0.00 4.40
129 130 2.665008 TAGGAGCGCATGGTGGCATC 62.665 60.000 11.47 0.00 0.00 3.91
130 131 2.515523 GAGCGCATGGTGGCATCT 60.516 61.111 11.47 0.00 0.00 2.90
131 132 2.827190 AGCGCATGGTGGCATCTG 60.827 61.111 11.47 0.00 0.00 2.90
132 133 4.564116 GCGCATGGTGGCATCTGC 62.564 66.667 0.30 10.83 41.14 4.26
133 134 3.135457 CGCATGGTGGCATCTGCA 61.135 61.111 17.96 0.00 44.36 4.41
134 135 2.493030 GCATGGTGGCATCTGCAC 59.507 61.111 14.58 0.96 44.36 4.57
135 136 2.050350 GCATGGTGGCATCTGCACT 61.050 57.895 14.58 0.00 44.36 4.40
136 137 0.749091 GCATGGTGGCATCTGCACTA 60.749 55.000 14.58 0.00 44.36 2.74
137 138 1.019673 CATGGTGGCATCTGCACTAC 58.980 55.000 0.00 0.32 44.36 2.73
138 139 0.914644 ATGGTGGCATCTGCACTACT 59.085 50.000 0.00 0.00 44.36 2.57
139 140 1.567357 TGGTGGCATCTGCACTACTA 58.433 50.000 0.00 0.00 44.36 1.82
140 141 1.207089 TGGTGGCATCTGCACTACTAC 59.793 52.381 0.00 0.00 44.36 2.73
141 142 1.482593 GGTGGCATCTGCACTACTACT 59.517 52.381 4.33 0.00 44.36 2.57
142 143 2.693591 GGTGGCATCTGCACTACTACTA 59.306 50.000 4.33 0.00 44.36 1.82
143 144 3.132289 GGTGGCATCTGCACTACTACTAA 59.868 47.826 4.33 0.00 44.36 2.24
144 145 4.113354 GTGGCATCTGCACTACTACTAAC 58.887 47.826 4.33 0.00 44.36 2.34
145 146 4.023980 TGGCATCTGCACTACTACTAACT 58.976 43.478 4.33 0.00 44.36 2.24
146 147 4.466370 TGGCATCTGCACTACTACTAACTT 59.534 41.667 4.33 0.00 44.36 2.66
147 148 5.046591 TGGCATCTGCACTACTACTAACTTT 60.047 40.000 4.33 0.00 44.36 2.66
148 149 5.875359 GGCATCTGCACTACTACTAACTTTT 59.125 40.000 4.33 0.00 44.36 2.27
149 150 6.371825 GGCATCTGCACTACTACTAACTTTTT 59.628 38.462 4.33 0.00 44.36 1.94
150 151 7.548075 GGCATCTGCACTACTACTAACTTTTTA 59.452 37.037 4.33 0.00 44.36 1.52
151 152 8.596380 GCATCTGCACTACTACTAACTTTTTAG 58.404 37.037 0.00 0.00 39.80 1.85
152 153 8.596380 CATCTGCACTACTACTAACTTTTTAGC 58.404 37.037 0.00 0.00 38.71 3.09
153 154 7.893658 TCTGCACTACTACTAACTTTTTAGCT 58.106 34.615 0.00 0.00 38.71 3.32
154 155 7.813148 TCTGCACTACTACTAACTTTTTAGCTG 59.187 37.037 0.00 0.00 38.71 4.24
155 156 7.439381 TGCACTACTACTAACTTTTTAGCTGT 58.561 34.615 0.00 0.00 38.71 4.40
156 157 8.579006 TGCACTACTACTAACTTTTTAGCTGTA 58.421 33.333 0.00 0.00 38.71 2.74
157 158 9.415544 GCACTACTACTAACTTTTTAGCTGTAA 57.584 33.333 0.00 0.00 38.71 2.41
159 160 9.617975 ACTACTACTAACTTTTTAGCTGTAACG 57.382 33.333 0.00 0.00 38.71 3.18
160 161 9.617975 CTACTACTAACTTTTTAGCTGTAACGT 57.382 33.333 0.00 0.00 38.71 3.99
161 162 8.512800 ACTACTAACTTTTTAGCTGTAACGTC 57.487 34.615 0.00 0.00 38.71 4.34
162 163 6.443876 ACTAACTTTTTAGCTGTAACGTCG 57.556 37.500 0.00 0.00 38.71 5.12
163 164 5.979517 ACTAACTTTTTAGCTGTAACGTCGT 59.020 36.000 0.00 0.00 38.71 4.34
164 165 7.138736 ACTAACTTTTTAGCTGTAACGTCGTA 58.861 34.615 0.00 0.00 38.71 3.43
165 166 6.443876 AACTTTTTAGCTGTAACGTCGTAG 57.556 37.500 0.00 0.00 0.00 3.51
166 167 5.523369 ACTTTTTAGCTGTAACGTCGTAGT 58.477 37.500 0.00 0.00 0.00 2.73
167 168 6.668323 ACTTTTTAGCTGTAACGTCGTAGTA 58.332 36.000 0.00 0.00 0.00 1.82
168 169 6.798959 ACTTTTTAGCTGTAACGTCGTAGTAG 59.201 38.462 0.00 0.00 0.00 2.57
169 170 5.862924 TTTAGCTGTAACGTCGTAGTAGT 57.137 39.130 0.00 0.00 0.00 2.73
170 171 6.961359 TTTAGCTGTAACGTCGTAGTAGTA 57.039 37.500 0.00 0.00 0.00 1.82
171 172 6.575083 TTAGCTGTAACGTCGTAGTAGTAG 57.425 41.667 0.00 0.00 0.00 2.57
172 173 3.308323 AGCTGTAACGTCGTAGTAGTAGC 59.692 47.826 0.00 3.80 0.00 3.58
173 174 3.062639 GCTGTAACGTCGTAGTAGTAGCA 59.937 47.826 0.00 0.00 0.00 3.49
174 175 4.572845 CTGTAACGTCGTAGTAGTAGCAC 58.427 47.826 0.00 0.00 0.00 4.40
175 176 2.795121 AACGTCGTAGTAGTAGCACG 57.205 50.000 0.00 6.67 37.03 5.34
176 177 1.714794 ACGTCGTAGTAGTAGCACGT 58.285 50.000 0.00 7.71 37.02 4.49
177 178 1.391485 ACGTCGTAGTAGTAGCACGTG 59.609 52.381 12.28 12.28 38.94 4.49
178 179 1.267235 CGTCGTAGTAGTAGCACGTGG 60.267 57.143 18.88 0.00 37.02 4.94
179 180 2.002586 GTCGTAGTAGTAGCACGTGGA 58.997 52.381 18.88 0.00 37.02 4.02
180 181 2.002586 TCGTAGTAGTAGCACGTGGAC 58.997 52.381 18.88 0.66 37.02 4.02
181 182 1.063174 CGTAGTAGTAGCACGTGGACC 59.937 57.143 18.88 0.00 0.00 4.46
182 183 1.403323 GTAGTAGTAGCACGTGGACCC 59.597 57.143 18.88 0.00 0.00 4.46
183 184 0.251474 AGTAGTAGCACGTGGACCCA 60.251 55.000 18.88 0.00 0.00 4.51
184 185 0.822164 GTAGTAGCACGTGGACCCAT 59.178 55.000 18.88 0.00 0.00 4.00
185 186 2.026641 GTAGTAGCACGTGGACCCATA 58.973 52.381 18.88 0.00 0.00 2.74
186 187 0.822164 AGTAGCACGTGGACCCATAC 59.178 55.000 18.88 5.33 0.00 2.39
187 188 0.822164 GTAGCACGTGGACCCATACT 59.178 55.000 18.88 5.49 0.00 2.12
188 189 2.026641 GTAGCACGTGGACCCATACTA 58.973 52.381 18.88 4.44 0.00 1.82
189 190 0.822164 AGCACGTGGACCCATACTAC 59.178 55.000 18.88 0.00 0.00 2.73
190 191 0.822164 GCACGTGGACCCATACTACT 59.178 55.000 18.88 0.00 0.00 2.57
191 192 2.026641 GCACGTGGACCCATACTACTA 58.973 52.381 18.88 0.00 0.00 1.82
192 193 2.034305 GCACGTGGACCCATACTACTAG 59.966 54.545 18.88 0.00 0.00 2.57
193 194 2.034305 CACGTGGACCCATACTACTAGC 59.966 54.545 7.95 0.00 0.00 3.42
194 195 1.612463 CGTGGACCCATACTACTAGCC 59.388 57.143 0.00 0.00 0.00 3.93
195 196 2.674420 GTGGACCCATACTACTAGCCA 58.326 52.381 0.00 0.00 0.00 4.75
196 197 3.036091 GTGGACCCATACTACTAGCCAA 58.964 50.000 0.00 0.00 0.00 4.52
197 198 3.453353 GTGGACCCATACTACTAGCCAAA 59.547 47.826 0.00 0.00 0.00 3.28
198 199 4.102681 GTGGACCCATACTACTAGCCAAAT 59.897 45.833 0.00 0.00 0.00 2.32
199 200 4.724798 TGGACCCATACTACTAGCCAAATT 59.275 41.667 0.00 0.00 0.00 1.82
200 201 5.906495 TGGACCCATACTACTAGCCAAATTA 59.094 40.000 0.00 0.00 0.00 1.40
201 202 6.183361 TGGACCCATACTACTAGCCAAATTAC 60.183 42.308 0.00 0.00 0.00 1.89
202 203 6.183810 ACCCATACTACTAGCCAAATTACC 57.816 41.667 0.00 0.00 0.00 2.85
203 204 5.072736 ACCCATACTACTAGCCAAATTACCC 59.927 44.000 0.00 0.00 0.00 3.69
204 205 5.072600 CCCATACTACTAGCCAAATTACCCA 59.927 44.000 0.00 0.00 0.00 4.51
205 206 6.240176 CCCATACTACTAGCCAAATTACCCAT 60.240 42.308 0.00 0.00 0.00 4.00
206 207 6.655003 CCATACTACTAGCCAAATTACCCATG 59.345 42.308 0.00 0.00 0.00 3.66
207 208 4.461198 ACTACTAGCCAAATTACCCATGC 58.539 43.478 0.00 0.00 0.00 4.06
208 209 3.669939 ACTAGCCAAATTACCCATGCT 57.330 42.857 0.00 0.00 0.00 3.79
209 210 4.788925 ACTAGCCAAATTACCCATGCTA 57.211 40.909 0.00 0.00 0.00 3.49
210 211 4.461198 ACTAGCCAAATTACCCATGCTAC 58.539 43.478 0.00 0.00 0.00 3.58
211 212 3.669939 AGCCAAATTACCCATGCTACT 57.330 42.857 0.00 0.00 0.00 2.57
212 213 4.788925 AGCCAAATTACCCATGCTACTA 57.211 40.909 0.00 0.00 0.00 1.82
213 214 5.124036 AGCCAAATTACCCATGCTACTAA 57.876 39.130 0.00 0.00 0.00 2.24
214 215 5.705400 AGCCAAATTACCCATGCTACTAAT 58.295 37.500 0.00 0.00 0.00 1.73
215 216 6.848069 AGCCAAATTACCCATGCTACTAATA 58.152 36.000 0.00 0.00 0.00 0.98
216 217 6.715264 AGCCAAATTACCCATGCTACTAATAC 59.285 38.462 0.00 0.00 0.00 1.89
217 218 6.072119 GCCAAATTACCCATGCTACTAATACC 60.072 42.308 0.00 0.00 0.00 2.73
218 219 6.433093 CCAAATTACCCATGCTACTAATACCC 59.567 42.308 0.00 0.00 0.00 3.69
219 220 7.231467 CAAATTACCCATGCTACTAATACCCT 58.769 38.462 0.00 0.00 0.00 4.34
220 221 7.402448 AATTACCCATGCTACTAATACCCTT 57.598 36.000 0.00 0.00 0.00 3.95
221 222 6.835029 TTACCCATGCTACTAATACCCTTT 57.165 37.500 0.00 0.00 0.00 3.11
222 223 5.727243 ACCCATGCTACTAATACCCTTTT 57.273 39.130 0.00 0.00 0.00 2.27
223 224 6.087276 ACCCATGCTACTAATACCCTTTTT 57.913 37.500 0.00 0.00 0.00 1.94
224 225 6.127101 ACCCATGCTACTAATACCCTTTTTC 58.873 40.000 0.00 0.00 0.00 2.29
225 226 6.126409 CCCATGCTACTAATACCCTTTTTCA 58.874 40.000 0.00 0.00 0.00 2.69
226 227 6.777580 CCCATGCTACTAATACCCTTTTTCAT 59.222 38.462 0.00 0.00 0.00 2.57
227 228 7.942341 CCCATGCTACTAATACCCTTTTTCATA 59.058 37.037 0.00 0.00 0.00 2.15
228 229 9.003658 CCATGCTACTAATACCCTTTTTCATAG 57.996 37.037 0.00 0.00 0.00 2.23
229 230 9.561069 CATGCTACTAATACCCTTTTTCATAGT 57.439 33.333 0.00 0.00 0.00 2.12
235 236 9.886132 ACTAATACCCTTTTTCATAGTAGTGTG 57.114 33.333 0.00 0.00 29.80 3.82
236 237 9.326413 CTAATACCCTTTTTCATAGTAGTGTGG 57.674 37.037 0.00 0.00 0.00 4.17
237 238 5.578157 ACCCTTTTTCATAGTAGTGTGGT 57.422 39.130 0.00 0.00 0.00 4.16
238 239 5.557866 ACCCTTTTTCATAGTAGTGTGGTC 58.442 41.667 0.00 0.00 0.00 4.02
239 240 5.309806 ACCCTTTTTCATAGTAGTGTGGTCT 59.690 40.000 0.00 0.00 0.00 3.85
240 241 5.875359 CCCTTTTTCATAGTAGTGTGGTCTC 59.125 44.000 0.00 0.00 0.00 3.36
241 242 5.875359 CCTTTTTCATAGTAGTGTGGTCTCC 59.125 44.000 0.00 0.00 0.00 3.71
242 243 5.416271 TTTTCATAGTAGTGTGGTCTCCC 57.584 43.478 0.00 0.00 0.00 4.30
243 244 4.332683 TTCATAGTAGTGTGGTCTCCCT 57.667 45.455 0.00 0.00 0.00 4.20
244 245 3.899726 TCATAGTAGTGTGGTCTCCCTC 58.100 50.000 0.00 0.00 0.00 4.30
245 246 2.414994 TAGTAGTGTGGTCTCCCTCG 57.585 55.000 0.00 0.00 0.00 4.63
246 247 0.966370 AGTAGTGTGGTCTCCCTCGC 60.966 60.000 0.00 0.00 35.44 5.03
247 248 1.681327 TAGTGTGGTCTCCCTCGCC 60.681 63.158 0.00 0.00 35.75 5.54
248 249 4.436998 GTGTGGTCTCCCTCGCCG 62.437 72.222 0.00 0.00 0.00 6.46
265 266 4.854784 GCGCGCATCGTGAGAGGA 62.855 66.667 29.10 0.00 46.52 3.71
266 267 2.653448 CGCGCATCGTGAGAGGAG 60.653 66.667 8.75 0.00 46.52 3.69
267 268 2.801421 GCGCATCGTGAGAGGAGA 59.199 61.111 0.30 0.00 46.52 3.71
268 269 1.361993 GCGCATCGTGAGAGGAGAT 59.638 57.895 0.30 0.00 46.52 2.75
269 270 0.938637 GCGCATCGTGAGAGGAGATG 60.939 60.000 0.30 0.77 46.52 2.90
270 271 0.318529 CGCATCGTGAGAGGAGATGG 60.319 60.000 6.77 0.00 46.52 3.51
271 272 0.033228 GCATCGTGAGAGGAGATGGG 59.967 60.000 6.77 0.00 46.52 4.00
272 273 0.033228 CATCGTGAGAGGAGATGGGC 59.967 60.000 0.00 0.00 46.52 5.36
273 274 1.000359 TCGTGAGAGGAGATGGGCA 60.000 57.895 0.00 0.00 34.84 5.36
274 275 0.614697 TCGTGAGAGGAGATGGGCAA 60.615 55.000 0.00 0.00 34.84 4.52
275 276 0.250234 CGTGAGAGGAGATGGGCAAA 59.750 55.000 0.00 0.00 0.00 3.68
276 277 1.134280 CGTGAGAGGAGATGGGCAAAT 60.134 52.381 0.00 0.00 0.00 2.32
277 278 2.103094 CGTGAGAGGAGATGGGCAAATA 59.897 50.000 0.00 0.00 0.00 1.40
278 279 3.737850 GTGAGAGGAGATGGGCAAATAG 58.262 50.000 0.00 0.00 0.00 1.73
279 280 2.707791 TGAGAGGAGATGGGCAAATAGG 59.292 50.000 0.00 0.00 0.00 2.57
280 281 2.039613 GAGAGGAGATGGGCAAATAGGG 59.960 54.545 0.00 0.00 0.00 3.53
281 282 2.057922 GAGGAGATGGGCAAATAGGGA 58.942 52.381 0.00 0.00 0.00 4.20
282 283 2.039613 GAGGAGATGGGCAAATAGGGAG 59.960 54.545 0.00 0.00 0.00 4.30
283 284 1.546548 GGAGATGGGCAAATAGGGAGC 60.547 57.143 0.00 0.00 0.00 4.70
284 285 0.109342 AGATGGGCAAATAGGGAGCG 59.891 55.000 0.00 0.00 0.00 5.03
285 286 0.890996 GATGGGCAAATAGGGAGCGG 60.891 60.000 0.00 0.00 0.00 5.52
286 287 2.203351 GGGCAAATAGGGAGCGGG 60.203 66.667 0.00 0.00 0.00 6.13
287 288 2.752807 GGGCAAATAGGGAGCGGGA 61.753 63.158 0.00 0.00 0.00 5.14
288 289 1.226262 GGCAAATAGGGAGCGGGAA 59.774 57.895 0.00 0.00 0.00 3.97
289 290 0.395173 GGCAAATAGGGAGCGGGAAA 60.395 55.000 0.00 0.00 0.00 3.13
290 291 1.025041 GCAAATAGGGAGCGGGAAAG 58.975 55.000 0.00 0.00 0.00 2.62
291 292 1.682087 GCAAATAGGGAGCGGGAAAGT 60.682 52.381 0.00 0.00 0.00 2.66
292 293 2.017049 CAAATAGGGAGCGGGAAAGTG 58.983 52.381 0.00 0.00 0.00 3.16
293 294 0.546598 AATAGGGAGCGGGAAAGTGG 59.453 55.000 0.00 0.00 0.00 4.00
294 295 0.326238 ATAGGGAGCGGGAAAGTGGA 60.326 55.000 0.00 0.00 0.00 4.02
295 296 0.976073 TAGGGAGCGGGAAAGTGGAG 60.976 60.000 0.00 0.00 0.00 3.86
296 297 2.269241 GGAGCGGGAAAGTGGAGG 59.731 66.667 0.00 0.00 0.00 4.30
297 298 2.593956 GGAGCGGGAAAGTGGAGGT 61.594 63.158 0.00 0.00 0.00 3.85
298 299 1.079057 GAGCGGGAAAGTGGAGGTC 60.079 63.158 0.00 0.00 0.00 3.85
299 300 2.046217 GCGGGAAAGTGGAGGTCC 60.046 66.667 0.00 0.00 0.00 4.46
300 301 2.890766 GCGGGAAAGTGGAGGTCCA 61.891 63.158 0.00 0.00 45.30 4.02
308 309 3.009275 TGGAGGTCCATGGCCATG 58.991 61.111 34.82 34.82 42.01 3.66
327 328 3.680786 GGCCGAAACCCAACAGGC 61.681 66.667 0.00 0.00 46.51 4.85
328 329 4.038080 GCCGAAACCCAACAGGCG 62.038 66.667 0.00 0.00 40.58 5.52
329 330 2.281208 CCGAAACCCAACAGGCGA 60.281 61.111 0.00 0.00 40.58 5.54
330 331 1.674322 CCGAAACCCAACAGGCGAT 60.674 57.895 0.00 0.00 40.58 4.58
331 332 1.501741 CGAAACCCAACAGGCGATG 59.498 57.895 0.00 0.00 40.58 3.84
332 333 1.883021 GAAACCCAACAGGCGATGG 59.117 57.895 0.00 0.02 40.58 3.51
333 334 2.212900 GAAACCCAACAGGCGATGGC 62.213 60.000 0.00 0.00 40.58 4.40
345 346 3.344215 GATGGCGCTGGCGATCTG 61.344 66.667 19.31 0.00 46.97 2.90
355 356 3.622756 GCGATCTGCCTCGATGTG 58.377 61.111 4.81 0.00 41.12 3.21
356 357 1.953138 GCGATCTGCCTCGATGTGG 60.953 63.158 4.81 0.00 41.12 4.17
364 365 4.457496 CTCGATGTGGCAGGCGGT 62.457 66.667 0.00 0.00 0.00 5.68
365 366 4.758251 TCGATGTGGCAGGCGGTG 62.758 66.667 0.00 0.00 0.00 4.94
380 381 4.430765 GTGGCGTGATCCGTCCGT 62.431 66.667 5.87 0.00 41.60 4.69
381 382 3.687102 TGGCGTGATCCGTCCGTT 61.687 61.111 5.87 0.00 41.60 4.44
382 383 2.884207 GGCGTGATCCGTCCGTTC 60.884 66.667 5.66 0.00 39.32 3.95
383 384 2.884207 GCGTGATCCGTCCGTTCC 60.884 66.667 5.66 0.00 39.32 3.62
384 385 2.578713 CGTGATCCGTCCGTTCCG 60.579 66.667 0.00 0.00 0.00 4.30
385 386 2.884207 GTGATCCGTCCGTTCCGC 60.884 66.667 0.00 0.00 0.00 5.54
386 387 4.137872 TGATCCGTCCGTTCCGCC 62.138 66.667 0.00 0.00 0.00 6.13
417 418 3.382832 CCCGACGGCTTCCTCACT 61.383 66.667 8.86 0.00 0.00 3.41
418 419 2.050350 CCCGACGGCTTCCTCACTA 61.050 63.158 8.86 0.00 0.00 2.74
419 420 1.139095 CCGACGGCTTCCTCACTAC 59.861 63.158 0.00 0.00 0.00 2.73
420 421 1.226323 CGACGGCTTCCTCACTACG 60.226 63.158 0.00 0.00 0.00 3.51
421 422 1.642037 CGACGGCTTCCTCACTACGA 61.642 60.000 0.00 0.00 0.00 3.43
422 423 0.179169 GACGGCTTCCTCACTACGAC 60.179 60.000 0.00 0.00 0.00 4.34
423 424 0.892358 ACGGCTTCCTCACTACGACA 60.892 55.000 0.00 0.00 0.00 4.35
424 425 0.242825 CGGCTTCCTCACTACGACAA 59.757 55.000 0.00 0.00 0.00 3.18
425 426 1.711206 GGCTTCCTCACTACGACAAC 58.289 55.000 0.00 0.00 0.00 3.32
426 427 1.337821 GCTTCCTCACTACGACAACG 58.662 55.000 0.00 0.00 45.75 4.10
442 443 3.760035 CGTCCTCGTGGGAGTGGG 61.760 72.222 3.23 0.00 46.10 4.61
443 444 3.391382 GTCCTCGTGGGAGTGGGG 61.391 72.222 3.23 0.00 46.10 4.96
453 454 4.382320 GAGTGGGGCGCGGTGTTA 62.382 66.667 8.83 0.00 0.00 2.41
454 455 3.675619 GAGTGGGGCGCGGTGTTAT 62.676 63.158 8.83 0.00 0.00 1.89
455 456 2.187424 GTGGGGCGCGGTGTTATA 59.813 61.111 8.83 0.00 0.00 0.98
456 457 2.175621 GTGGGGCGCGGTGTTATAC 61.176 63.158 8.83 0.00 0.00 1.47
457 458 2.187424 GGGGCGCGGTGTTATACA 59.813 61.111 8.83 0.00 0.00 2.29
458 459 1.449956 GGGGCGCGGTGTTATACAA 60.450 57.895 8.83 0.00 0.00 2.41
459 460 1.433837 GGGGCGCGGTGTTATACAAG 61.434 60.000 8.83 0.00 0.00 3.16
460 461 1.350665 GGCGCGGTGTTATACAAGC 59.649 57.895 8.83 0.00 32.85 4.01
461 462 1.363145 GGCGCGGTGTTATACAAGCA 61.363 55.000 8.83 0.00 34.89 3.91
462 463 0.247537 GCGCGGTGTTATACAAGCAC 60.248 55.000 8.83 0.00 34.89 4.40
463 464 1.072391 CGCGGTGTTATACAAGCACA 58.928 50.000 0.00 0.00 34.89 4.57
464 465 1.663643 CGCGGTGTTATACAAGCACAT 59.336 47.619 0.00 0.00 34.89 3.21
465 466 2.536728 CGCGGTGTTATACAAGCACATG 60.537 50.000 0.00 0.00 34.89 3.21
466 467 2.223249 GCGGTGTTATACAAGCACATGG 60.223 50.000 0.00 0.00 35.17 3.66
467 468 2.223249 CGGTGTTATACAAGCACATGGC 60.223 50.000 0.00 0.00 45.30 4.40
483 484 3.864686 GCGGTGCGGCTACATGTG 61.865 66.667 9.11 0.00 0.00 3.21
484 485 3.195002 CGGTGCGGCTACATGTGG 61.195 66.667 9.11 6.75 0.00 4.17
485 486 2.046314 GGTGCGGCTACATGTGGT 60.046 61.111 9.11 0.00 0.00 4.16
486 487 2.106683 GGTGCGGCTACATGTGGTC 61.107 63.158 9.11 6.09 0.00 4.02
487 488 1.079127 GTGCGGCTACATGTGGTCT 60.079 57.895 12.26 0.00 0.00 3.85
488 489 0.673644 GTGCGGCTACATGTGGTCTT 60.674 55.000 12.26 0.00 0.00 3.01
489 490 0.391130 TGCGGCTACATGTGGTCTTC 60.391 55.000 12.26 4.33 0.00 2.87
490 491 1.090052 GCGGCTACATGTGGTCTTCC 61.090 60.000 12.26 3.08 0.00 3.46
491 492 0.537188 CGGCTACATGTGGTCTTCCT 59.463 55.000 12.26 0.00 34.23 3.36
492 493 1.066143 CGGCTACATGTGGTCTTCCTT 60.066 52.381 12.26 0.00 34.23 3.36
493 494 2.359900 GGCTACATGTGGTCTTCCTTG 58.640 52.381 9.11 0.00 34.23 3.61
494 495 2.359900 GCTACATGTGGTCTTCCTTGG 58.640 52.381 9.11 0.00 34.23 3.61
495 496 2.941415 GCTACATGTGGTCTTCCTTGGG 60.941 54.545 9.11 0.00 34.23 4.12
496 497 1.149101 ACATGTGGTCTTCCTTGGGT 58.851 50.000 0.00 0.00 34.23 4.51
497 498 1.073923 ACATGTGGTCTTCCTTGGGTC 59.926 52.381 0.00 0.00 34.23 4.46
498 499 0.698818 ATGTGGTCTTCCTTGGGTCC 59.301 55.000 0.00 0.00 34.23 4.46
499 500 0.696143 TGTGGTCTTCCTTGGGTCCA 60.696 55.000 0.00 0.00 34.23 4.02
500 501 0.250770 GTGGTCTTCCTTGGGTCCAC 60.251 60.000 0.00 0.00 38.47 4.02
501 502 1.003718 GGTCTTCCTTGGGTCCACG 60.004 63.158 0.00 0.00 0.00 4.94
502 503 1.671379 GTCTTCCTTGGGTCCACGC 60.671 63.158 0.00 0.00 0.00 5.34
503 504 2.359975 CTTCCTTGGGTCCACGCC 60.360 66.667 0.00 0.00 0.00 5.68
504 505 4.323477 TTCCTTGGGTCCACGCCG 62.323 66.667 0.00 0.00 0.00 6.46
527 528 4.148825 GACACTGCCGATCGCCCT 62.149 66.667 10.32 0.00 36.24 5.19
528 529 4.148825 ACACTGCCGATCGCCCTC 62.149 66.667 10.32 0.00 36.24 4.30
529 530 4.147449 CACTGCCGATCGCCCTCA 62.147 66.667 10.32 3.65 36.24 3.86
530 531 3.390521 ACTGCCGATCGCCCTCAA 61.391 61.111 10.32 0.00 36.24 3.02
531 532 2.109799 CTGCCGATCGCCCTCAAT 59.890 61.111 10.32 0.00 36.24 2.57
532 533 1.958205 CTGCCGATCGCCCTCAATC 60.958 63.158 10.32 0.00 36.24 2.67
533 534 2.666526 GCCGATCGCCCTCAATCC 60.667 66.667 10.32 0.00 0.00 3.01
534 535 2.356313 CCGATCGCCCTCAATCCG 60.356 66.667 10.32 0.00 0.00 4.18
535 536 2.728180 CGATCGCCCTCAATCCGA 59.272 61.111 0.26 0.00 35.29 4.55
536 537 1.372251 CGATCGCCCTCAATCCGAG 60.372 63.158 0.26 0.00 41.89 4.63
537 538 1.742768 GATCGCCCTCAATCCGAGT 59.257 57.895 0.00 0.00 40.48 4.18
538 539 0.319125 GATCGCCCTCAATCCGAGTC 60.319 60.000 0.00 0.00 40.48 3.36
539 540 1.749334 ATCGCCCTCAATCCGAGTCC 61.749 60.000 0.00 0.00 40.48 3.85
540 541 2.107141 GCCCTCAATCCGAGTCCG 59.893 66.667 0.00 0.00 40.48 4.79
541 542 2.722201 GCCCTCAATCCGAGTCCGT 61.722 63.158 0.00 0.00 40.48 4.69
542 543 1.898154 CCCTCAATCCGAGTCCGTT 59.102 57.895 0.00 0.00 40.48 4.44
543 544 0.460284 CCCTCAATCCGAGTCCGTTG 60.460 60.000 0.00 0.00 40.48 4.10
544 545 1.084370 CCTCAATCCGAGTCCGTTGC 61.084 60.000 0.00 0.00 40.48 4.17
545 546 0.389817 CTCAATCCGAGTCCGTTGCA 60.390 55.000 0.00 0.00 36.94 4.08
555 556 3.301579 CGAGTCCGTTGCATTTATACACG 60.302 47.826 0.00 0.00 0.00 4.49
592 593 9.743581 ACATGTATATCTGGCATTTTGATATCA 57.256 29.630 0.00 0.00 35.68 2.15
626 628 9.834628 GTAGTGTTAAAGCACTTGCATTTATAA 57.165 29.630 4.76 0.00 46.45 0.98
627 629 8.970691 AGTGTTAAAGCACTTGCATTTATAAG 57.029 30.769 3.62 0.00 46.45 1.73
634 721 7.502120 AGCACTTGCATTTATAAGATACCAG 57.498 36.000 3.62 0.00 45.16 4.00
635 722 7.056635 AGCACTTGCATTTATAAGATACCAGT 58.943 34.615 3.62 0.00 45.16 4.00
665 752 8.190122 TCCAACACTTTGATATCATGTATTTGC 58.810 33.333 6.17 0.00 34.24 3.68
667 754 9.356433 CAACACTTTGATATCATGTATTTGCAA 57.644 29.630 6.17 0.00 34.24 4.08
697 784 6.764308 AGCACTTGCATTTATACACAAGAT 57.236 33.333 8.46 0.00 45.16 2.40
699 786 7.923888 AGCACTTGCATTTATACACAAGATAG 58.076 34.615 8.46 0.37 45.16 2.08
755 842 9.176181 CACGTATTTGCAGTATTAAAACACTTT 57.824 29.630 0.00 0.00 0.00 2.66
756 843 9.389570 ACGTATTTGCAGTATTAAAACACTTTC 57.610 29.630 0.00 0.00 0.00 2.62
806 893 8.587952 TGTATATCCAACACTTTGATATCACG 57.412 34.615 4.48 2.25 34.24 4.35
813 900 7.389330 TCCAACACTTTGATATCACGTATTTGT 59.611 33.333 4.48 0.81 34.24 2.83
847 934 8.375608 AGCACTTGCATTTATACAAGAGATAG 57.624 34.615 9.54 0.00 44.89 2.08
848 935 8.206867 AGCACTTGCATTTATACAAGAGATAGA 58.793 33.333 9.54 0.00 44.89 1.98
878 965 9.507329 ACATGTATATCTGACATTTGTATTCCC 57.493 33.333 0.00 0.00 35.31 3.97
879 966 9.506018 CATGTATATCTGACATTTGTATTCCCA 57.494 33.333 0.00 0.00 35.31 4.37
880 967 8.902540 TGTATATCTGACATTTGTATTCCCAC 57.097 34.615 0.00 0.00 0.00 4.61
881 968 8.490311 TGTATATCTGACATTTGTATTCCCACA 58.510 33.333 0.00 0.00 0.00 4.17
883 970 6.949352 ATCTGACATTTGTATTCCCACATC 57.051 37.500 0.00 0.00 0.00 3.06
884 971 4.875536 TCTGACATTTGTATTCCCACATCG 59.124 41.667 0.00 0.00 0.00 3.84
885 972 4.837972 TGACATTTGTATTCCCACATCGA 58.162 39.130 0.00 0.00 0.00 3.59
886 973 4.634004 TGACATTTGTATTCCCACATCGAC 59.366 41.667 0.00 0.00 0.00 4.20
888 975 2.702592 TTGTATTCCCACATCGACCC 57.297 50.000 0.00 0.00 0.00 4.46
889 976 1.574263 TGTATTCCCACATCGACCCA 58.426 50.000 0.00 0.00 0.00 4.51
890 977 2.123589 TGTATTCCCACATCGACCCAT 58.876 47.619 0.00 0.00 0.00 4.00
891 978 2.104111 TGTATTCCCACATCGACCCATC 59.896 50.000 0.00 0.00 0.00 3.51
892 979 1.511613 ATTCCCACATCGACCCATCT 58.488 50.000 0.00 0.00 0.00 2.90
893 980 1.285280 TTCCCACATCGACCCATCTT 58.715 50.000 0.00 0.00 0.00 2.40
894 981 0.541392 TCCCACATCGACCCATCTTG 59.459 55.000 0.00 0.00 0.00 3.02
895 982 0.464373 CCCACATCGACCCATCTTGG 60.464 60.000 0.00 0.00 37.25 3.61
906 993 2.762327 ACCCATCTTGGACATTCAATGC 59.238 45.455 0.00 0.00 40.96 3.56
910 997 4.158949 CCATCTTGGACATTCAATGCAAGA 59.841 41.667 17.68 17.68 40.96 3.02
916 1003 5.472148 TGGACATTCAATGCAAGATCAAAC 58.528 37.500 0.00 0.00 0.00 2.93
925 1012 6.371271 TCAATGCAAGATCAAACGAACATCTA 59.629 34.615 0.00 0.00 0.00 1.98
937 1024 9.594478 TCAAACGAACATCTATATAAAGAGCAA 57.406 29.630 0.00 0.00 0.00 3.91
938 1025 9.855361 CAAACGAACATCTATATAAAGAGCAAG 57.145 33.333 0.00 0.00 0.00 4.01
941 1028 7.169982 ACGAACATCTATATAAAGAGCAAGCAC 59.830 37.037 0.00 0.00 0.00 4.40
949 1036 2.472695 AAGAGCAAGCACATCGGTTA 57.527 45.000 0.00 0.00 32.89 2.85
950 1037 1.726853 AGAGCAAGCACATCGGTTAC 58.273 50.000 0.00 0.00 32.89 2.50
1031 1123 0.383231 AGAGCACAACTGTTGCTTGC 59.617 50.000 21.65 21.65 39.21 4.01
1057 1149 0.671781 CACTCTGGGTTTGCTCCTCG 60.672 60.000 0.00 0.00 0.00 4.63
1203 1312 3.848272 ATCAGTGTAAACATTTGGCCG 57.152 42.857 0.00 0.00 0.00 6.13
1323 1434 7.173218 TCACTCCATTAGCAAGACTTACAAAAG 59.827 37.037 0.00 0.00 38.77 2.27
1383 1494 3.085443 ACGCGAGAACTTCTATGATGG 57.915 47.619 15.93 0.00 0.00 3.51
1393 1504 3.181456 ACTTCTATGATGGCTTCTGCTCC 60.181 47.826 1.86 0.00 39.59 4.70
1408 1519 3.133542 TCTGCTCCGACATTGAGATTGAT 59.866 43.478 0.00 0.00 31.26 2.57
1466 1577 1.003972 CACTGCCGCCACAATATAACG 60.004 52.381 0.00 0.00 0.00 3.18
1517 1628 0.883833 AGAAGCAAAAGTCATGCCCG 59.116 50.000 0.00 0.00 44.91 6.13
1553 1664 6.363882 TCCATAGGCATGTACAATTGATTGA 58.636 36.000 13.59 0.00 40.14 2.57
1606 1717 7.202016 TGTTCAGTTTGTAAGATGAATCACC 57.798 36.000 0.00 0.00 34.45 4.02
1663 1774 7.853929 TCAATTTAAGTCGTTGCTTAAGTGAAC 59.146 33.333 4.02 6.86 40.62 3.18
1670 1781 3.064820 CGTTGCTTAAGTGAACTGTGGTT 59.935 43.478 4.02 0.00 38.52 3.67
1671 1782 4.351192 GTTGCTTAAGTGAACTGTGGTTG 58.649 43.478 4.02 0.00 35.58 3.77
1753 1864 4.692625 ACATCTGCTACAAACACAAGCTAG 59.307 41.667 0.00 0.00 37.16 3.42
1799 1910 3.081804 ACATGAAAGCCTTTAGGAACCG 58.918 45.455 0.00 0.00 37.39 4.44
1878 1989 9.430623 TCGTTGATTCTCACAATTCAATAGTAA 57.569 29.630 0.00 0.00 0.00 2.24
1900 2011 3.421844 AGATAGTTTGAACAAGGTGGGC 58.578 45.455 0.00 0.00 0.00 5.36
1917 2028 4.173256 GTGGGCGATTGATTTGTAAAAGG 58.827 43.478 0.00 0.00 0.00 3.11
1938 2049 3.118592 GGAGATCTCGGTTTTGGTCATCT 60.119 47.826 16.46 0.00 0.00 2.90
1939 2050 4.116238 GAGATCTCGGTTTTGGTCATCTC 58.884 47.826 7.04 0.00 0.00 2.75
1945 2056 2.031157 CGGTTTTGGTCATCTCCACAAC 60.031 50.000 6.29 6.29 43.38 3.32
1970 2081 4.299796 CCTTGTGGGGTGGGGGTG 62.300 72.222 0.00 0.00 0.00 4.61
2029 2140 5.623956 TCGTATCATTAGGGGATGTTTGT 57.376 39.130 0.00 0.00 0.00 2.83
2130 2241 2.810274 CCTCACACACCATTCAGAACTG 59.190 50.000 0.00 0.00 0.00 3.16
2149 2260 0.960861 GCTGCCACCTTACCTTGGTC 60.961 60.000 0.00 0.00 35.28 4.02
2172 2283 1.329599 ACCGTTTGCGTCTTTTGTCTC 59.670 47.619 0.00 0.00 36.15 3.36
2197 2308 7.696872 TCGAACTTATATGAATATGTCGCTAGC 59.303 37.037 4.06 4.06 0.00 3.42
2213 2324 4.935205 TCGCTAGCAAATACATGACAAAGT 59.065 37.500 16.45 0.00 0.00 2.66
2215 2326 6.072728 TCGCTAGCAAATACATGACAAAGTTT 60.073 34.615 16.45 0.00 0.00 2.66
2222 2333 7.096065 GCAAATACATGACAAAGTTTCCAGTTC 60.096 37.037 0.00 0.00 0.00 3.01
2229 2340 3.315191 ACAAAGTTTCCAGTTCGACATGG 59.685 43.478 8.52 8.52 37.97 3.66
2253 2364 0.035739 TTGTAAACCAGGACGGGCTC 59.964 55.000 0.00 0.00 40.22 4.70
2267 2378 2.505819 ACGGGCTCAATCATAAAGAGGT 59.494 45.455 0.00 0.00 0.00 3.85
2322 2433 0.810031 ACACTGTGTTCGTGAGCCAC 60.810 55.000 7.80 0.00 36.29 5.01
2403 2514 2.228343 AGCGAGTGTACAACTAGGTGTC 59.772 50.000 18.76 9.90 40.24 3.67
2408 2519 4.850134 GAGTGTACAACTAGGTGTCGAACC 60.850 50.000 18.76 4.87 44.45 3.62
2440 2551 6.691754 ACCGTGCATTTCAATAATCATACA 57.308 33.333 0.00 0.00 0.00 2.29
2452 2563 9.949174 TTCAATAATCATACACACATTATGCAC 57.051 29.630 0.00 0.00 0.00 4.57
2472 2583 5.089396 CACGTGATGTGTTGATACAACAA 57.911 39.130 10.90 9.41 43.88 2.83
2478 2589 7.464358 GTGATGTGTTGATACAACAAGGTATC 58.536 38.462 16.89 16.45 46.31 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.473066 TTTTTCCCACGCTACTACTAACT 57.527 39.130 0.00 0.00 0.00 2.24
20 21 6.534079 CCTAAATACTAGTAGCGCACAGTTTT 59.466 38.462 11.47 11.44 0.00 2.43
21 22 6.040878 CCTAAATACTAGTAGCGCACAGTTT 58.959 40.000 11.47 4.25 0.00 2.66
23 24 4.885907 TCCTAAATACTAGTAGCGCACAGT 59.114 41.667 11.47 9.29 0.00 3.55
24 25 5.434352 TCCTAAATACTAGTAGCGCACAG 57.566 43.478 11.47 2.82 0.00 3.66
27 28 8.489990 CTAGTATCCTAAATACTAGTAGCGCA 57.510 38.462 11.47 0.00 44.31 6.09
35 36 9.212641 CACACGCTACTAGTATCCTAAATACTA 57.787 37.037 2.33 5.16 36.38 1.82
36 37 7.174599 CCACACGCTACTAGTATCCTAAATACT 59.825 40.741 2.33 3.45 38.32 2.12
37 38 7.040823 ACCACACGCTACTAGTATCCTAAATAC 60.041 40.741 2.33 0.00 0.00 1.89
38 39 7.000472 ACCACACGCTACTAGTATCCTAAATA 59.000 38.462 2.33 0.00 0.00 1.40
39 40 5.832060 ACCACACGCTACTAGTATCCTAAAT 59.168 40.000 2.33 0.00 0.00 1.40
40 41 5.195940 ACCACACGCTACTAGTATCCTAAA 58.804 41.667 2.33 0.00 0.00 1.85
41 42 4.785301 ACCACACGCTACTAGTATCCTAA 58.215 43.478 2.33 0.00 0.00 2.69
42 43 4.428294 ACCACACGCTACTAGTATCCTA 57.572 45.455 2.33 0.00 0.00 2.94
43 44 3.294038 ACCACACGCTACTAGTATCCT 57.706 47.619 2.33 0.00 0.00 3.24
44 45 5.702349 AATACCACACGCTACTAGTATCC 57.298 43.478 2.33 0.00 0.00 2.59
45 46 9.376075 TCTATAATACCACACGCTACTAGTATC 57.624 37.037 2.33 0.00 0.00 2.24
46 47 9.902684 ATCTATAATACCACACGCTACTAGTAT 57.097 33.333 2.33 0.00 0.00 2.12
47 48 9.159364 CATCTATAATACCACACGCTACTAGTA 57.841 37.037 1.89 1.89 0.00 1.82
48 49 7.361885 GCATCTATAATACCACACGCTACTAGT 60.362 40.741 0.00 0.00 0.00 2.57
49 50 6.967767 GCATCTATAATACCACACGCTACTAG 59.032 42.308 0.00 0.00 0.00 2.57
50 51 6.431852 TGCATCTATAATACCACACGCTACTA 59.568 38.462 0.00 0.00 0.00 1.82
51 52 5.243060 TGCATCTATAATACCACACGCTACT 59.757 40.000 0.00 0.00 0.00 2.57
52 53 5.466819 TGCATCTATAATACCACACGCTAC 58.533 41.667 0.00 0.00 0.00 3.58
53 54 5.715434 TGCATCTATAATACCACACGCTA 57.285 39.130 0.00 0.00 0.00 4.26
54 55 4.600692 TGCATCTATAATACCACACGCT 57.399 40.909 0.00 0.00 0.00 5.07
55 56 5.862924 AATGCATCTATAATACCACACGC 57.137 39.130 0.00 0.00 0.00 5.34
56 57 9.073368 GTAGTAATGCATCTATAATACCACACG 57.927 37.037 0.00 0.00 0.00 4.49
66 67 8.869897 GCGCAAAATAGTAGTAATGCATCTATA 58.130 33.333 0.30 0.00 33.55 1.31
67 68 7.604164 AGCGCAAAATAGTAGTAATGCATCTAT 59.396 33.333 11.47 0.00 33.55 1.98
68 69 6.929049 AGCGCAAAATAGTAGTAATGCATCTA 59.071 34.615 11.47 0.00 33.55 1.98
69 70 5.760253 AGCGCAAAATAGTAGTAATGCATCT 59.240 36.000 11.47 0.00 33.55 2.90
70 71 5.990408 AGCGCAAAATAGTAGTAATGCATC 58.010 37.500 11.47 0.00 33.55 3.91
71 72 6.706270 AGTAGCGCAAAATAGTAGTAATGCAT 59.294 34.615 11.47 0.00 33.55 3.96
72 73 6.046593 AGTAGCGCAAAATAGTAGTAATGCA 58.953 36.000 11.47 0.00 33.55 3.96
73 74 6.526566 AGTAGCGCAAAATAGTAGTAATGC 57.473 37.500 11.47 4.23 0.00 3.56
74 75 8.798748 AGTAGTAGCGCAAAATAGTAGTAATG 57.201 34.615 11.47 0.00 0.00 1.90
76 77 9.722056 GTTAGTAGTAGCGCAAAATAGTAGTAA 57.278 33.333 11.47 10.69 0.00 2.24
77 78 8.892723 TGTTAGTAGTAGCGCAAAATAGTAGTA 58.107 33.333 11.47 5.03 0.00 1.82
78 79 7.765307 TGTTAGTAGTAGCGCAAAATAGTAGT 58.235 34.615 11.47 6.03 0.00 2.73
79 80 8.798748 ATGTTAGTAGTAGCGCAAAATAGTAG 57.201 34.615 11.47 0.00 0.00 2.57
81 82 9.760077 ATAATGTTAGTAGTAGCGCAAAATAGT 57.240 29.630 11.47 6.49 0.00 2.12
84 85 9.760077 ACTATAATGTTAGTAGTAGCGCAAAAT 57.240 29.630 11.47 0.00 30.65 1.82
86 87 9.888878 CTACTATAATGTTAGTAGTAGCGCAAA 57.111 33.333 11.47 0.00 43.34 3.68
87 88 8.509690 CCTACTATAATGTTAGTAGTAGCGCAA 58.490 37.037 11.47 0.00 45.35 4.85
88 89 7.879677 TCCTACTATAATGTTAGTAGTAGCGCA 59.120 37.037 11.47 0.00 45.35 6.09
89 90 8.261492 TCCTACTATAATGTTAGTAGTAGCGC 57.739 38.462 0.00 0.00 45.35 5.92
90 91 8.389603 GCTCCTACTATAATGTTAGTAGTAGCG 58.610 40.741 17.00 6.90 46.03 4.26
92 93 8.389603 GCGCTCCTACTATAATGTTAGTAGTAG 58.610 40.741 15.83 12.49 45.35 2.57
93 94 7.879677 TGCGCTCCTACTATAATGTTAGTAGTA 59.120 37.037 9.73 5.21 45.35 1.82
94 95 6.713903 TGCGCTCCTACTATAATGTTAGTAGT 59.286 38.462 9.73 1.52 45.35 2.73
95 96 7.142306 TGCGCTCCTACTATAATGTTAGTAG 57.858 40.000 9.73 12.39 45.94 2.57
96 97 7.362660 CCATGCGCTCCTACTATAATGTTAGTA 60.363 40.741 9.73 0.00 34.35 1.82
97 98 6.390721 CATGCGCTCCTACTATAATGTTAGT 58.609 40.000 9.73 0.00 36.43 2.24
98 99 5.807520 CCATGCGCTCCTACTATAATGTTAG 59.192 44.000 9.73 0.00 0.00 2.34
99 100 5.245301 ACCATGCGCTCCTACTATAATGTTA 59.755 40.000 9.73 0.00 0.00 2.41
100 101 4.040461 ACCATGCGCTCCTACTATAATGTT 59.960 41.667 9.73 0.00 0.00 2.71
101 102 3.578716 ACCATGCGCTCCTACTATAATGT 59.421 43.478 9.73 0.00 0.00 2.71
102 103 3.928992 CACCATGCGCTCCTACTATAATG 59.071 47.826 9.73 0.00 0.00 1.90
103 104 3.055819 CCACCATGCGCTCCTACTATAAT 60.056 47.826 9.73 0.00 0.00 1.28
104 105 2.299013 CCACCATGCGCTCCTACTATAA 59.701 50.000 9.73 0.00 0.00 0.98
105 106 1.893137 CCACCATGCGCTCCTACTATA 59.107 52.381 9.73 0.00 0.00 1.31
106 107 0.681733 CCACCATGCGCTCCTACTAT 59.318 55.000 9.73 0.00 0.00 2.12
107 108 2.028125 GCCACCATGCGCTCCTACTA 62.028 60.000 9.73 0.00 0.00 1.82
108 109 2.903357 CCACCATGCGCTCCTACT 59.097 61.111 9.73 0.00 0.00 2.57
109 110 2.897350 GCCACCATGCGCTCCTAC 60.897 66.667 9.73 0.00 0.00 3.18
110 111 2.665008 GATGCCACCATGCGCTCCTA 62.665 60.000 9.73 0.00 0.00 2.94
111 112 4.119363 ATGCCACCATGCGCTCCT 62.119 61.111 9.73 0.00 0.00 3.69
112 113 3.589881 GATGCCACCATGCGCTCC 61.590 66.667 9.73 0.00 0.00 4.70
113 114 2.515523 AGATGCCACCATGCGCTC 60.516 61.111 9.73 0.00 0.00 5.03
114 115 2.827190 CAGATGCCACCATGCGCT 60.827 61.111 9.73 0.00 0.00 5.92
115 116 4.564116 GCAGATGCCACCATGCGC 62.564 66.667 0.00 0.00 34.31 6.09
116 117 3.135457 TGCAGATGCCACCATGCG 61.135 61.111 1.72 0.00 41.18 4.73
117 118 0.749091 TAGTGCAGATGCCACCATGC 60.749 55.000 1.72 0.00 41.18 4.06
118 119 1.019673 GTAGTGCAGATGCCACCATG 58.980 55.000 1.72 0.00 41.18 3.66
119 120 0.914644 AGTAGTGCAGATGCCACCAT 59.085 50.000 1.72 0.00 41.18 3.55
120 121 1.207089 GTAGTAGTGCAGATGCCACCA 59.793 52.381 1.72 0.00 41.18 4.17
121 122 1.482593 AGTAGTAGTGCAGATGCCACC 59.517 52.381 1.72 0.00 41.18 4.61
122 123 2.969628 AGTAGTAGTGCAGATGCCAC 57.030 50.000 1.72 1.22 41.18 5.01
123 124 4.023980 AGTTAGTAGTAGTGCAGATGCCA 58.976 43.478 1.72 0.00 41.18 4.92
124 125 4.657436 AGTTAGTAGTAGTGCAGATGCC 57.343 45.455 1.72 0.00 41.18 4.40
125 126 6.969828 AAAAGTTAGTAGTAGTGCAGATGC 57.030 37.500 0.00 0.00 42.50 3.91
126 127 8.596380 GCTAAAAAGTTAGTAGTAGTGCAGATG 58.404 37.037 0.00 0.00 39.23 2.90
127 128 8.532819 AGCTAAAAAGTTAGTAGTAGTGCAGAT 58.467 33.333 0.00 0.00 39.23 2.90
128 129 7.813148 CAGCTAAAAAGTTAGTAGTAGTGCAGA 59.187 37.037 0.00 0.00 39.23 4.26
129 130 7.599245 ACAGCTAAAAAGTTAGTAGTAGTGCAG 59.401 37.037 0.00 0.00 39.23 4.41
130 131 7.439381 ACAGCTAAAAAGTTAGTAGTAGTGCA 58.561 34.615 0.00 0.00 39.23 4.57
131 132 7.886405 ACAGCTAAAAAGTTAGTAGTAGTGC 57.114 36.000 0.00 0.00 39.23 4.40
133 134 9.617975 CGTTACAGCTAAAAAGTTAGTAGTAGT 57.382 33.333 0.00 0.00 39.23 2.73
134 135 9.617975 ACGTTACAGCTAAAAAGTTAGTAGTAG 57.382 33.333 0.00 0.00 39.23 2.57
135 136 9.612620 GACGTTACAGCTAAAAAGTTAGTAGTA 57.387 33.333 0.00 0.00 39.23 1.82
136 137 7.324616 CGACGTTACAGCTAAAAAGTTAGTAGT 59.675 37.037 0.00 0.00 39.23 2.73
137 138 7.324616 ACGACGTTACAGCTAAAAAGTTAGTAG 59.675 37.037 0.00 0.00 39.23 2.57
138 139 7.138736 ACGACGTTACAGCTAAAAAGTTAGTA 58.861 34.615 0.00 0.00 39.23 1.82
139 140 5.979517 ACGACGTTACAGCTAAAAAGTTAGT 59.020 36.000 0.00 0.00 39.23 2.24
140 141 6.443876 ACGACGTTACAGCTAAAAAGTTAG 57.556 37.500 0.00 0.00 39.90 2.34
141 142 7.138736 ACTACGACGTTACAGCTAAAAAGTTA 58.861 34.615 5.50 0.00 0.00 2.24
142 143 5.979517 ACTACGACGTTACAGCTAAAAAGTT 59.020 36.000 5.50 0.00 0.00 2.66
143 144 5.523369 ACTACGACGTTACAGCTAAAAAGT 58.477 37.500 5.50 0.00 0.00 2.66
144 145 6.798959 ACTACTACGACGTTACAGCTAAAAAG 59.201 38.462 5.50 0.00 0.00 2.27
145 146 6.668323 ACTACTACGACGTTACAGCTAAAAA 58.332 36.000 5.50 0.00 0.00 1.94
146 147 6.241207 ACTACTACGACGTTACAGCTAAAA 57.759 37.500 5.50 0.00 0.00 1.52
147 148 5.862924 ACTACTACGACGTTACAGCTAAA 57.137 39.130 5.50 0.00 0.00 1.85
148 149 5.005779 GCTACTACTACGACGTTACAGCTAA 59.994 44.000 5.50 0.00 0.00 3.09
149 150 4.504461 GCTACTACTACGACGTTACAGCTA 59.496 45.833 5.50 0.00 0.00 3.32
150 151 3.308323 GCTACTACTACGACGTTACAGCT 59.692 47.826 5.50 0.00 0.00 4.24
151 152 3.062639 TGCTACTACTACGACGTTACAGC 59.937 47.826 5.50 7.67 0.00 4.40
152 153 4.572845 GTGCTACTACTACGACGTTACAG 58.427 47.826 5.50 0.00 0.00 2.74
153 154 3.060761 CGTGCTACTACTACGACGTTACA 59.939 47.826 5.50 0.00 40.01 2.41
154 155 3.060895 ACGTGCTACTACTACGACGTTAC 59.939 47.826 5.50 0.00 40.01 2.50
155 156 3.060761 CACGTGCTACTACTACGACGTTA 59.939 47.826 5.50 0.00 37.92 3.18
156 157 2.069273 ACGTGCTACTACTACGACGTT 58.931 47.619 5.50 0.00 40.01 3.99
157 158 1.391485 CACGTGCTACTACTACGACGT 59.609 52.381 0.82 5.52 40.45 4.34
158 159 1.267235 CCACGTGCTACTACTACGACG 60.267 57.143 10.91 0.00 40.01 5.12
159 160 2.002586 TCCACGTGCTACTACTACGAC 58.997 52.381 10.91 0.00 40.01 4.34
160 161 2.002586 GTCCACGTGCTACTACTACGA 58.997 52.381 10.91 0.00 40.01 3.43
161 162 1.063174 GGTCCACGTGCTACTACTACG 59.937 57.143 10.91 0.00 42.98 3.51
162 163 1.403323 GGGTCCACGTGCTACTACTAC 59.597 57.143 10.91 0.00 0.00 2.73
163 164 1.004628 TGGGTCCACGTGCTACTACTA 59.995 52.381 10.91 0.00 0.00 1.82
164 165 0.251474 TGGGTCCACGTGCTACTACT 60.251 55.000 10.91 0.00 0.00 2.57
165 166 0.822164 ATGGGTCCACGTGCTACTAC 59.178 55.000 10.91 8.43 0.00 2.73
166 167 2.026641 GTATGGGTCCACGTGCTACTA 58.973 52.381 10.91 0.00 0.00 1.82
167 168 0.822164 GTATGGGTCCACGTGCTACT 59.178 55.000 10.91 0.00 0.00 2.57
168 169 0.822164 AGTATGGGTCCACGTGCTAC 59.178 55.000 10.91 10.35 0.00 3.58
169 170 2.026641 GTAGTATGGGTCCACGTGCTA 58.973 52.381 10.91 0.31 0.00 3.49
170 171 0.822164 GTAGTATGGGTCCACGTGCT 59.178 55.000 10.91 1.38 0.00 4.40
171 172 0.822164 AGTAGTATGGGTCCACGTGC 59.178 55.000 10.91 0.00 0.00 5.34
172 173 2.034305 GCTAGTAGTATGGGTCCACGTG 59.966 54.545 9.08 9.08 0.00 4.49
173 174 2.305009 GCTAGTAGTATGGGTCCACGT 58.695 52.381 0.00 0.00 0.00 4.49
174 175 1.612463 GGCTAGTAGTATGGGTCCACG 59.388 57.143 0.00 0.00 0.00 4.94
175 176 2.674420 TGGCTAGTAGTATGGGTCCAC 58.326 52.381 0.00 0.00 0.00 4.02
176 177 3.408157 TTGGCTAGTAGTATGGGTCCA 57.592 47.619 0.00 0.00 0.00 4.02
177 178 4.976540 ATTTGGCTAGTAGTATGGGTCC 57.023 45.455 0.00 0.00 0.00 4.46
178 179 6.228995 GGTAATTTGGCTAGTAGTATGGGTC 58.771 44.000 0.00 0.00 0.00 4.46
179 180 5.072736 GGGTAATTTGGCTAGTAGTATGGGT 59.927 44.000 0.00 0.00 0.00 4.51
180 181 5.072600 TGGGTAATTTGGCTAGTAGTATGGG 59.927 44.000 0.00 0.00 0.00 4.00
181 182 6.182507 TGGGTAATTTGGCTAGTAGTATGG 57.817 41.667 0.00 0.00 0.00 2.74
182 183 6.149474 GCATGGGTAATTTGGCTAGTAGTATG 59.851 42.308 0.00 0.00 0.00 2.39
183 184 6.044404 AGCATGGGTAATTTGGCTAGTAGTAT 59.956 38.462 0.00 0.00 0.00 2.12
184 185 5.368523 AGCATGGGTAATTTGGCTAGTAGTA 59.631 40.000 0.00 0.00 0.00 1.82
185 186 4.166144 AGCATGGGTAATTTGGCTAGTAGT 59.834 41.667 0.00 0.00 0.00 2.73
186 187 4.718961 AGCATGGGTAATTTGGCTAGTAG 58.281 43.478 0.00 0.00 0.00 2.57
187 188 4.788925 AGCATGGGTAATTTGGCTAGTA 57.211 40.909 0.00 0.00 0.00 1.82
188 189 3.669939 AGCATGGGTAATTTGGCTAGT 57.330 42.857 0.00 0.00 0.00 2.57
189 190 4.718961 AGTAGCATGGGTAATTTGGCTAG 58.281 43.478 0.00 0.00 34.83 3.42
190 191 4.788925 AGTAGCATGGGTAATTTGGCTA 57.211 40.909 0.00 0.00 33.10 3.93
191 192 3.669939 AGTAGCATGGGTAATTTGGCT 57.330 42.857 0.00 0.00 35.50 4.75
192 193 6.072119 GGTATTAGTAGCATGGGTAATTTGGC 60.072 42.308 0.00 0.00 0.00 4.52
193 194 6.433093 GGGTATTAGTAGCATGGGTAATTTGG 59.567 42.308 0.00 0.00 0.00 3.28
194 195 7.231467 AGGGTATTAGTAGCATGGGTAATTTG 58.769 38.462 0.00 0.00 0.00 2.32
195 196 7.402448 AGGGTATTAGTAGCATGGGTAATTT 57.598 36.000 0.00 0.00 0.00 1.82
196 197 7.402448 AAGGGTATTAGTAGCATGGGTAATT 57.598 36.000 0.00 0.00 0.00 1.40
197 198 7.402448 AAAGGGTATTAGTAGCATGGGTAAT 57.598 36.000 0.00 0.00 0.00 1.89
198 199 6.835029 AAAGGGTATTAGTAGCATGGGTAA 57.165 37.500 0.00 0.00 0.00 2.85
199 200 6.835029 AAAAGGGTATTAGTAGCATGGGTA 57.165 37.500 0.00 0.00 0.00 3.69
200 201 5.727243 AAAAGGGTATTAGTAGCATGGGT 57.273 39.130 0.00 0.00 0.00 4.51
201 202 6.126409 TGAAAAAGGGTATTAGTAGCATGGG 58.874 40.000 0.00 0.00 0.00 4.00
202 203 7.823745 ATGAAAAAGGGTATTAGTAGCATGG 57.176 36.000 0.00 0.00 0.00 3.66
203 204 9.561069 ACTATGAAAAAGGGTATTAGTAGCATG 57.439 33.333 0.00 0.00 0.00 4.06
209 210 9.886132 CACACTACTATGAAAAAGGGTATTAGT 57.114 33.333 0.00 0.00 0.00 2.24
210 211 9.326413 CCACACTACTATGAAAAAGGGTATTAG 57.674 37.037 0.00 0.00 0.00 1.73
211 212 8.828751 ACCACACTACTATGAAAAAGGGTATTA 58.171 33.333 0.00 0.00 0.00 0.98
212 213 7.696017 ACCACACTACTATGAAAAAGGGTATT 58.304 34.615 0.00 0.00 0.00 1.89
213 214 7.182206 AGACCACACTACTATGAAAAAGGGTAT 59.818 37.037 0.00 0.00 0.00 2.73
214 215 6.499350 AGACCACACTACTATGAAAAAGGGTA 59.501 38.462 0.00 0.00 0.00 3.69
215 216 5.309806 AGACCACACTACTATGAAAAAGGGT 59.690 40.000 0.00 0.00 0.00 4.34
216 217 5.805728 AGACCACACTACTATGAAAAAGGG 58.194 41.667 0.00 0.00 0.00 3.95
217 218 5.875359 GGAGACCACACTACTATGAAAAAGG 59.125 44.000 0.00 0.00 0.00 3.11
218 219 6.969828 GGAGACCACACTACTATGAAAAAG 57.030 41.667 0.00 0.00 0.00 2.27
248 249 4.854784 TCCTCTCACGATGCGCGC 62.855 66.667 27.26 27.26 46.04 6.86
250 251 0.938637 CATCTCCTCTCACGATGCGC 60.939 60.000 0.00 0.00 0.00 6.09
251 252 0.318529 CCATCTCCTCTCACGATGCG 60.319 60.000 0.00 0.00 34.63 4.73
252 253 0.033228 CCCATCTCCTCTCACGATGC 59.967 60.000 0.00 0.00 34.63 3.91
253 254 0.033228 GCCCATCTCCTCTCACGATG 59.967 60.000 0.00 0.00 35.48 3.84
254 255 0.397675 TGCCCATCTCCTCTCACGAT 60.398 55.000 0.00 0.00 0.00 3.73
255 256 0.614697 TTGCCCATCTCCTCTCACGA 60.615 55.000 0.00 0.00 0.00 4.35
256 257 0.250234 TTTGCCCATCTCCTCTCACG 59.750 55.000 0.00 0.00 0.00 4.35
257 258 2.725221 ATTTGCCCATCTCCTCTCAC 57.275 50.000 0.00 0.00 0.00 3.51
258 259 2.707791 CCTATTTGCCCATCTCCTCTCA 59.292 50.000 0.00 0.00 0.00 3.27
259 260 2.039613 CCCTATTTGCCCATCTCCTCTC 59.960 54.545 0.00 0.00 0.00 3.20
260 261 2.061061 CCCTATTTGCCCATCTCCTCT 58.939 52.381 0.00 0.00 0.00 3.69
261 262 2.039613 CTCCCTATTTGCCCATCTCCTC 59.960 54.545 0.00 0.00 0.00 3.71
262 263 2.061061 CTCCCTATTTGCCCATCTCCT 58.939 52.381 0.00 0.00 0.00 3.69
263 264 1.546548 GCTCCCTATTTGCCCATCTCC 60.547 57.143 0.00 0.00 0.00 3.71
264 265 1.879796 CGCTCCCTATTTGCCCATCTC 60.880 57.143 0.00 0.00 0.00 2.75
265 266 0.109342 CGCTCCCTATTTGCCCATCT 59.891 55.000 0.00 0.00 0.00 2.90
266 267 0.890996 CCGCTCCCTATTTGCCCATC 60.891 60.000 0.00 0.00 0.00 3.51
267 268 1.151450 CCGCTCCCTATTTGCCCAT 59.849 57.895 0.00 0.00 0.00 4.00
268 269 2.595095 CCGCTCCCTATTTGCCCA 59.405 61.111 0.00 0.00 0.00 5.36
269 270 2.203351 CCCGCTCCCTATTTGCCC 60.203 66.667 0.00 0.00 0.00 5.36
270 271 0.395173 TTTCCCGCTCCCTATTTGCC 60.395 55.000 0.00 0.00 0.00 4.52
271 272 1.025041 CTTTCCCGCTCCCTATTTGC 58.975 55.000 0.00 0.00 0.00 3.68
272 273 2.017049 CACTTTCCCGCTCCCTATTTG 58.983 52.381 0.00 0.00 0.00 2.32
273 274 1.064685 CCACTTTCCCGCTCCCTATTT 60.065 52.381 0.00 0.00 0.00 1.40
274 275 0.546598 CCACTTTCCCGCTCCCTATT 59.453 55.000 0.00 0.00 0.00 1.73
275 276 0.326238 TCCACTTTCCCGCTCCCTAT 60.326 55.000 0.00 0.00 0.00 2.57
276 277 0.976073 CTCCACTTTCCCGCTCCCTA 60.976 60.000 0.00 0.00 0.00 3.53
277 278 2.203938 TCCACTTTCCCGCTCCCT 60.204 61.111 0.00 0.00 0.00 4.20
278 279 2.269241 CTCCACTTTCCCGCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
279 280 2.269241 CCTCCACTTTCCCGCTCC 59.731 66.667 0.00 0.00 0.00 4.70
280 281 1.079057 GACCTCCACTTTCCCGCTC 60.079 63.158 0.00 0.00 0.00 5.03
281 282 2.593956 GGACCTCCACTTTCCCGCT 61.594 63.158 0.00 0.00 35.64 5.52
282 283 2.046217 GGACCTCCACTTTCCCGC 60.046 66.667 0.00 0.00 35.64 6.13
283 284 3.478780 TGGACCTCCACTTTCCCG 58.521 61.111 0.00 0.00 42.01 5.14
310 311 3.680786 GCCTGTTGGGTTTCGGCC 61.681 66.667 0.00 0.00 37.43 6.13
311 312 4.038080 CGCCTGTTGGGTTTCGGC 62.038 66.667 0.00 0.00 37.43 5.54
312 313 1.674322 ATCGCCTGTTGGGTTTCGG 60.674 57.895 0.00 0.00 37.43 4.30
313 314 1.501741 CATCGCCTGTTGGGTTTCG 59.498 57.895 0.00 0.00 37.43 3.46
314 315 1.883021 CCATCGCCTGTTGGGTTTC 59.117 57.895 0.00 0.00 37.43 2.78
315 316 2.275380 GCCATCGCCTGTTGGGTTT 61.275 57.895 0.00 0.00 35.79 3.27
316 317 2.676471 GCCATCGCCTGTTGGGTT 60.676 61.111 0.00 0.00 35.79 4.11
327 328 4.957684 AGATCGCCAGCGCCATCG 62.958 66.667 2.29 4.93 39.59 3.84
328 329 3.344215 CAGATCGCCAGCGCCATC 61.344 66.667 2.29 6.39 39.59 3.51
338 339 1.953138 CCACATCGAGGCAGATCGC 60.953 63.158 0.00 1.55 42.43 4.58
339 340 4.333095 CCACATCGAGGCAGATCG 57.667 61.111 0.00 0.00 44.07 3.69
347 348 4.457496 ACCGCCTGCCACATCGAG 62.457 66.667 0.00 0.00 0.00 4.04
348 349 4.758251 CACCGCCTGCCACATCGA 62.758 66.667 0.00 0.00 0.00 3.59
400 401 2.050350 TAGTGAGGAAGCCGTCGGG 61.050 63.158 14.38 0.00 0.00 5.14
401 402 1.139095 GTAGTGAGGAAGCCGTCGG 59.861 63.158 6.99 6.99 0.00 4.79
402 403 1.226323 CGTAGTGAGGAAGCCGTCG 60.226 63.158 0.00 0.00 0.00 5.12
403 404 0.179169 GTCGTAGTGAGGAAGCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
404 405 0.892358 TGTCGTAGTGAGGAAGCCGT 60.892 55.000 0.00 0.00 0.00 5.68
405 406 0.242825 TTGTCGTAGTGAGGAAGCCG 59.757 55.000 0.00 0.00 0.00 5.52
406 407 1.711206 GTTGTCGTAGTGAGGAAGCC 58.289 55.000 0.00 0.00 0.00 4.35
407 408 1.337821 CGTTGTCGTAGTGAGGAAGC 58.662 55.000 0.00 0.00 0.00 3.86
425 426 3.760035 CCCACTCCCACGAGGACG 61.760 72.222 0.00 0.00 40.93 4.79
426 427 3.391382 CCCCACTCCCACGAGGAC 61.391 72.222 0.00 0.00 40.93 3.85
436 437 2.300850 TATAACACCGCGCCCCACTC 62.301 60.000 0.00 0.00 0.00 3.51
437 438 2.360767 TATAACACCGCGCCCCACT 61.361 57.895 0.00 0.00 0.00 4.00
438 439 2.175621 GTATAACACCGCGCCCCAC 61.176 63.158 0.00 0.00 0.00 4.61
439 440 2.181445 TTGTATAACACCGCGCCCCA 62.181 55.000 0.00 0.00 0.00 4.96
440 441 1.433837 CTTGTATAACACCGCGCCCC 61.434 60.000 0.00 0.00 0.00 5.80
441 442 2.011453 CTTGTATAACACCGCGCCC 58.989 57.895 0.00 0.00 0.00 6.13
442 443 1.350665 GCTTGTATAACACCGCGCC 59.649 57.895 0.00 0.00 0.00 6.53
443 444 0.247537 GTGCTTGTATAACACCGCGC 60.248 55.000 0.00 0.00 31.39 6.86
444 445 1.072391 TGTGCTTGTATAACACCGCG 58.928 50.000 0.00 0.00 33.30 6.46
445 446 2.223249 CCATGTGCTTGTATAACACCGC 60.223 50.000 0.00 0.00 33.30 5.68
446 447 2.223249 GCCATGTGCTTGTATAACACCG 60.223 50.000 0.00 0.00 36.87 4.94
447 448 2.223249 CGCCATGTGCTTGTATAACACC 60.223 50.000 4.92 0.00 38.05 4.16
448 449 2.223249 CCGCCATGTGCTTGTATAACAC 60.223 50.000 4.92 0.00 38.05 3.32
449 450 2.013400 CCGCCATGTGCTTGTATAACA 58.987 47.619 4.92 0.00 38.05 2.41
450 451 2.014128 ACCGCCATGTGCTTGTATAAC 58.986 47.619 4.92 0.00 38.05 1.89
451 452 2.013400 CACCGCCATGTGCTTGTATAA 58.987 47.619 4.92 0.00 38.05 0.98
452 453 1.662517 CACCGCCATGTGCTTGTATA 58.337 50.000 4.92 0.00 38.05 1.47
453 454 2.481212 CACCGCCATGTGCTTGTAT 58.519 52.632 4.92 0.00 38.05 2.29
454 455 3.979789 CACCGCCATGTGCTTGTA 58.020 55.556 4.92 0.00 38.05 2.41
463 464 4.175337 ATGTAGCCGCACCGCCAT 62.175 61.111 0.00 0.00 0.00 4.40
466 467 3.864686 CACATGTAGCCGCACCGC 61.865 66.667 0.00 0.00 0.00 5.68
467 468 3.195002 CCACATGTAGCCGCACCG 61.195 66.667 0.00 0.00 0.00 4.94
468 469 2.046314 ACCACATGTAGCCGCACC 60.046 61.111 0.00 0.00 0.00 5.01
469 470 0.673644 AAGACCACATGTAGCCGCAC 60.674 55.000 0.00 0.00 0.00 5.34
470 471 0.391130 GAAGACCACATGTAGCCGCA 60.391 55.000 0.00 0.00 0.00 5.69
471 472 1.090052 GGAAGACCACATGTAGCCGC 61.090 60.000 0.00 0.00 35.97 6.53
472 473 0.537188 AGGAAGACCACATGTAGCCG 59.463 55.000 0.00 0.00 38.94 5.52
473 474 2.359900 CAAGGAAGACCACATGTAGCC 58.640 52.381 0.00 0.00 38.94 3.93
474 475 2.359900 CCAAGGAAGACCACATGTAGC 58.640 52.381 0.00 0.00 38.94 3.58
475 476 2.305927 ACCCAAGGAAGACCACATGTAG 59.694 50.000 0.00 0.00 38.94 2.74
476 477 2.304761 GACCCAAGGAAGACCACATGTA 59.695 50.000 0.00 0.00 38.94 2.29
477 478 1.073923 GACCCAAGGAAGACCACATGT 59.926 52.381 0.00 0.00 38.94 3.21
478 479 1.614317 GGACCCAAGGAAGACCACATG 60.614 57.143 0.00 0.00 38.94 3.21
479 480 0.698818 GGACCCAAGGAAGACCACAT 59.301 55.000 0.00 0.00 38.94 3.21
480 481 0.696143 TGGACCCAAGGAAGACCACA 60.696 55.000 0.00 0.00 38.94 4.17
481 482 0.250770 GTGGACCCAAGGAAGACCAC 60.251 60.000 0.00 0.00 40.33 4.16
482 483 1.764571 CGTGGACCCAAGGAAGACCA 61.765 60.000 0.00 0.00 38.94 4.02
483 484 1.003718 CGTGGACCCAAGGAAGACC 60.004 63.158 0.00 0.00 0.00 3.85
484 485 1.671379 GCGTGGACCCAAGGAAGAC 60.671 63.158 4.27 0.00 0.00 3.01
485 486 2.747686 GCGTGGACCCAAGGAAGA 59.252 61.111 4.27 0.00 0.00 2.87
486 487 2.359975 GGCGTGGACCCAAGGAAG 60.360 66.667 4.27 0.00 0.00 3.46
487 488 4.323477 CGGCGTGGACCCAAGGAA 62.323 66.667 0.00 0.00 0.00 3.36
510 511 4.148825 AGGGCGATCGGCAGTGTC 62.149 66.667 37.72 22.57 46.16 3.67
511 512 4.148825 GAGGGCGATCGGCAGTGT 62.149 66.667 37.72 21.64 46.16 3.55
512 513 2.930385 ATTGAGGGCGATCGGCAGTG 62.930 60.000 37.72 1.01 46.16 3.66
513 514 2.650813 GATTGAGGGCGATCGGCAGT 62.651 60.000 37.72 26.49 46.16 4.40
514 515 1.958205 GATTGAGGGCGATCGGCAG 60.958 63.158 37.72 2.21 46.16 4.85
515 516 2.108976 GATTGAGGGCGATCGGCA 59.891 61.111 37.72 21.38 46.16 5.69
516 517 2.666526 GGATTGAGGGCGATCGGC 60.667 66.667 31.57 31.57 36.02 5.54
517 518 2.356313 CGGATTGAGGGCGATCGG 60.356 66.667 18.30 0.00 36.02 4.18
518 519 1.372251 CTCGGATTGAGGGCGATCG 60.372 63.158 11.69 11.69 41.29 3.69
519 520 4.663444 CTCGGATTGAGGGCGATC 57.337 61.111 0.00 0.00 41.29 3.69
527 528 0.249120 ATGCAACGGACTCGGATTGA 59.751 50.000 0.00 0.00 41.39 2.57
528 529 1.086696 AATGCAACGGACTCGGATTG 58.913 50.000 0.00 0.00 41.39 2.67
529 530 1.821216 AAATGCAACGGACTCGGATT 58.179 45.000 0.00 0.00 41.39 3.01
530 531 2.684001 TAAATGCAACGGACTCGGAT 57.316 45.000 0.00 0.00 41.39 4.18
531 532 2.684001 ATAAATGCAACGGACTCGGA 57.316 45.000 0.00 0.00 41.39 4.55
532 533 3.000925 GTGTATAAATGCAACGGACTCGG 59.999 47.826 0.00 0.00 41.39 4.63
533 534 3.301579 CGTGTATAAATGCAACGGACTCG 60.302 47.826 0.00 0.00 43.02 4.18
534 535 3.861113 TCGTGTATAAATGCAACGGACTC 59.139 43.478 5.13 0.00 0.00 3.36
535 536 3.852286 TCGTGTATAAATGCAACGGACT 58.148 40.909 5.13 0.00 0.00 3.85
536 537 3.861113 TCTCGTGTATAAATGCAACGGAC 59.139 43.478 5.13 0.00 0.00 4.79
537 538 4.112716 TCTCGTGTATAAATGCAACGGA 57.887 40.909 5.13 0.00 0.00 4.69
538 539 6.706055 ATATCTCGTGTATAAATGCAACGG 57.294 37.500 5.13 0.00 0.00 4.44
611 613 7.264373 ACTGGTATCTTATAAATGCAAGTGC 57.736 36.000 0.00 0.00 42.50 4.40
626 628 8.319057 TCAAAGTGTTGGATATACTGGTATCT 57.681 34.615 0.00 0.00 35.29 1.98
699 786 9.955208 TCAAAATGTCAGATATACATGCATTTC 57.045 29.630 0.00 0.00 37.62 2.17
854 941 9.507329 GTGGGAATACAAATGTCAGATATACAT 57.493 33.333 0.00 0.00 39.22 2.29
855 942 8.490311 TGTGGGAATACAAATGTCAGATATACA 58.510 33.333 0.00 0.00 0.00 2.29
856 943 8.902540 TGTGGGAATACAAATGTCAGATATAC 57.097 34.615 0.00 0.00 0.00 1.47
865 952 3.945285 GGTCGATGTGGGAATACAAATGT 59.055 43.478 0.00 0.00 33.69 2.71
871 958 2.368875 AGATGGGTCGATGTGGGAATAC 59.631 50.000 0.00 0.00 0.00 1.89
872 959 2.689658 AGATGGGTCGATGTGGGAATA 58.310 47.619 0.00 0.00 0.00 1.75
878 965 1.066215 TGTCCAAGATGGGTCGATGTG 60.066 52.381 0.00 0.00 38.32 3.21
879 966 1.275666 TGTCCAAGATGGGTCGATGT 58.724 50.000 0.00 0.00 38.32 3.06
880 967 2.627515 ATGTCCAAGATGGGTCGATG 57.372 50.000 0.00 0.00 38.32 3.84
881 968 2.505407 TGAATGTCCAAGATGGGTCGAT 59.495 45.455 0.00 0.00 38.32 3.59
883 970 2.401583 TGAATGTCCAAGATGGGTCG 57.598 50.000 0.00 0.00 38.32 4.79
884 971 3.181483 GCATTGAATGTCCAAGATGGGTC 60.181 47.826 7.05 0.00 38.32 4.46
885 972 2.762327 GCATTGAATGTCCAAGATGGGT 59.238 45.455 7.05 0.00 38.32 4.51
886 973 2.761767 TGCATTGAATGTCCAAGATGGG 59.238 45.455 7.05 0.00 38.32 4.00
888 975 5.319140 TCTTGCATTGAATGTCCAAGATG 57.681 39.130 18.17 2.32 0.00 2.90
889 976 5.655090 TGATCTTGCATTGAATGTCCAAGAT 59.345 36.000 26.59 26.59 39.63 2.40
890 977 5.011586 TGATCTTGCATTGAATGTCCAAGA 58.988 37.500 21.85 21.85 0.00 3.02
891 978 5.319140 TGATCTTGCATTGAATGTCCAAG 57.681 39.130 15.16 15.16 0.00 3.61
892 979 5.725325 TTGATCTTGCATTGAATGTCCAA 57.275 34.783 7.05 2.90 0.00 3.53
893 980 5.472148 GTTTGATCTTGCATTGAATGTCCA 58.528 37.500 7.05 0.00 0.00 4.02
894 981 4.560035 CGTTTGATCTTGCATTGAATGTCC 59.440 41.667 7.05 0.00 0.00 4.02
895 982 5.393124 TCGTTTGATCTTGCATTGAATGTC 58.607 37.500 7.05 0.19 0.00 3.06
910 997 9.764363 TGCTCTTTATATAGATGTTCGTTTGAT 57.236 29.630 0.00 0.00 0.00 2.57
916 1003 7.169813 TGTGCTTGCTCTTTATATAGATGTTCG 59.830 37.037 0.00 0.00 0.00 3.95
925 1012 4.708177 ACCGATGTGCTTGCTCTTTATAT 58.292 39.130 0.00 0.00 0.00 0.86
932 1019 0.727398 GGTAACCGATGTGCTTGCTC 59.273 55.000 0.00 0.00 0.00 4.26
937 1024 2.779755 TTGATGGTAACCGATGTGCT 57.220 45.000 0.00 0.00 0.00 4.40
938 1025 2.290641 GGATTGATGGTAACCGATGTGC 59.709 50.000 0.00 0.00 0.00 4.57
941 1028 3.207265 TGGGATTGATGGTAACCGATG 57.793 47.619 0.00 0.00 0.00 3.84
949 1036 2.762327 GTGCTTTGATGGGATTGATGGT 59.238 45.455 0.00 0.00 0.00 3.55
950 1037 3.028850 AGTGCTTTGATGGGATTGATGG 58.971 45.455 0.00 0.00 0.00 3.51
996 1088 2.103094 TGCTCTATTGAACGCCATAGCT 59.897 45.455 0.00 0.00 36.60 3.32
1031 1123 1.242076 CAAACCCAGAGTGAAGGCAG 58.758 55.000 0.00 0.00 0.00 4.85
1111 1205 3.634448 GGAGCTAGTGAGATGAGCTTACA 59.366 47.826 0.00 0.00 46.42 2.41
1192 1301 1.626686 TGGTCAATCGGCCAAATGTT 58.373 45.000 2.24 0.00 0.00 2.71
1247 1357 6.368516 CCTGCATACAAAATTTAACACCCAAG 59.631 38.462 0.00 0.00 0.00 3.61
1276 1387 2.110011 ACAAAACCCATGGTAAGCCTCT 59.890 45.455 11.73 0.00 33.12 3.69
1323 1434 3.873952 GTCCTCCTTGTCAGTGCATATTC 59.126 47.826 0.00 0.00 0.00 1.75
1383 1494 1.005340 CTCAATGTCGGAGCAGAAGC 58.995 55.000 0.00 0.00 42.56 3.86
1393 1504 4.505556 ACGTGATGATCAATCTCAATGTCG 59.494 41.667 0.00 2.00 36.15 4.35
1466 1577 1.078426 ATGGCGCCAACTCTGGTAC 60.078 57.895 36.33 0.00 45.53 3.34
1494 1605 3.428589 GGGCATGACTTTTGCTTCTGATC 60.429 47.826 0.00 0.00 40.03 2.92
1517 1628 3.347216 TGCCTATGGAGACTTTTCTTGC 58.653 45.455 0.00 0.00 29.47 4.01
1553 1664 8.562052 CCTACTGAAACGTAAAAATTAACCACT 58.438 33.333 0.00 0.00 0.00 4.00
1566 1677 6.092955 ACTGAACATTCCTACTGAAACGTA 57.907 37.500 0.00 0.00 36.33 3.57
1568 1679 5.924475 AACTGAACATTCCTACTGAAACG 57.076 39.130 0.00 0.00 36.33 3.60
1663 1774 7.703058 AGGAGATTATAAAAACCAACCACAG 57.297 36.000 0.00 0.00 0.00 3.66
1670 1781 9.137459 TGACAACAAAGGAGATTATAAAAACCA 57.863 29.630 0.00 0.00 0.00 3.67
1753 1864 7.209471 TGGTGTTTATTGTTGGATTGAGTAC 57.791 36.000 0.00 0.00 0.00 2.73
1799 1910 6.721571 TGATAGTTTCGTTGATTTGAGTCC 57.278 37.500 0.00 0.00 0.00 3.85
1878 1989 3.826729 GCCCACCTTGTTCAAACTATCTT 59.173 43.478 0.00 0.00 0.00 2.40
1900 2011 7.340699 CGAGATCTCCTTTTACAAATCAATCG 58.659 38.462 17.13 0.00 0.00 3.34
1917 2028 4.116238 GAGATGACCAAAACCGAGATCTC 58.884 47.826 13.05 13.05 0.00 2.75
1938 2049 0.321564 CAAGGCATCCTCGTTGTGGA 60.322 55.000 0.00 0.00 38.06 4.02
1939 2050 0.606401 ACAAGGCATCCTCGTTGTGG 60.606 55.000 1.73 0.00 41.65 4.17
1945 2056 2.124570 CCCCACAAGGCATCCTCG 60.125 66.667 0.00 0.00 30.89 4.63
1968 2079 2.383601 CCCACTATCCCACCCCCAC 61.384 68.421 0.00 0.00 0.00 4.61
1970 2081 2.776963 CCCCACTATCCCACCCCC 60.777 72.222 0.00 0.00 0.00 5.40
2029 2140 4.124238 CCCGACAGAAAGTTACACTCAAA 58.876 43.478 0.00 0.00 0.00 2.69
2066 2177 7.435192 TGATTTGTTACATGCTAGATCTACGTG 59.565 37.037 16.52 16.52 0.00 4.49
2130 2241 0.960861 GACCAAGGTAAGGTGGCAGC 60.961 60.000 9.02 9.02 40.09 5.25
2149 2260 0.656205 CAAAAGACGCAAACGGTCCG 60.656 55.000 10.48 10.48 46.04 4.79
2172 2283 7.484959 TGCTAGCGACATATTCATATAAGTTCG 59.515 37.037 10.77 0.00 0.00 3.95
2197 2308 7.113404 CGAACTGGAAACTTTGTCATGTATTTG 59.887 37.037 0.00 0.00 0.00 2.32
2213 2324 4.345859 ACTAACCATGTCGAACTGGAAA 57.654 40.909 18.69 7.24 36.35 3.13
2215 2326 3.070446 ACAACTAACCATGTCGAACTGGA 59.930 43.478 18.69 0.00 36.35 3.86
2229 2340 3.069289 CCCGTCCTGGTTTACAACTAAC 58.931 50.000 0.00 0.00 35.15 2.34
2248 2359 4.526970 TCAACCTCTTTATGATTGAGCCC 58.473 43.478 0.00 0.00 0.00 5.19
2253 2364 6.320171 CACTGCTTCAACCTCTTTATGATTG 58.680 40.000 0.00 0.00 0.00 2.67
2289 2400 1.599071 ACAGTGTTCGAGCAACATGTG 59.401 47.619 2.60 1.90 46.90 3.21
2318 2429 1.946283 GCCCTTGTAGTTCTCTGTGGC 60.946 57.143 0.00 0.00 0.00 5.01
2322 2433 3.736433 CGATGAGCCCTTGTAGTTCTCTG 60.736 52.174 0.00 0.00 0.00 3.35
2375 2486 0.319555 TTGTACACTCGCTGGCACTC 60.320 55.000 0.00 0.00 0.00 3.51
2403 2514 1.017177 CACGGTATGTGTGGGGTTCG 61.017 60.000 0.00 0.00 43.88 3.95
2440 2551 3.745332 CACATCACGTGCATAATGTGT 57.255 42.857 27.38 14.46 44.79 3.72
2452 2563 4.213270 ACCTTGTTGTATCAACACATCACG 59.787 41.667 13.68 2.89 34.61 4.35
2472 2583 8.921353 AGTCGTAGAGTTATGTTATGATACCT 57.079 34.615 0.00 0.00 36.34 3.08
2478 2589 9.355215 ACTTTTGAGTCGTAGAGTTATGTTATG 57.645 33.333 0.00 0.00 42.24 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.