Multiple sequence alignment - TraesCS3D01G441800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G441800 chr3D 100.000 5296 0 0 1 5296 551991236 551985941 0.000000e+00 9780.0
1 TraesCS3D01G441800 chr3D 89.677 155 11 5 300 453 87925996 87926146 5.410000e-45 193.0
2 TraesCS3D01G441800 chr3D 100.000 29 0 0 4746 4774 527207731 527207703 3.000000e-03 54.7
3 TraesCS3D01G441800 chr3A 87.833 3263 231 73 2082 5295 688681562 688678417 0.000000e+00 3674.0
4 TraesCS3D01G441800 chr3A 83.908 696 66 25 862 1536 688682799 688682129 1.620000e-174 623.0
5 TraesCS3D01G441800 chr3A 89.058 329 28 4 1590 1911 688681954 688681627 8.260000e-108 401.0
6 TraesCS3D01G441800 chr3A 84.831 178 21 5 994 1167 611009076 611009251 1.960000e-39 174.0
7 TraesCS3D01G441800 chr3B 88.945 2361 164 53 2079 4377 732435283 732432958 0.000000e+00 2824.0
8 TraesCS3D01G441800 chr3B 87.684 1291 117 32 748 2026 732436520 732435260 0.000000e+00 1465.0
9 TraesCS3D01G441800 chr3B 88.534 689 63 10 1 687 732438312 732437638 0.000000e+00 821.0
10 TraesCS3D01G441800 chr3B 89.451 237 8 6 5070 5296 732432655 732432426 3.120000e-72 283.0
11 TraesCS3D01G441800 chr3B 82.524 309 48 4 1 307 43552757 43553061 3.140000e-67 267.0
12 TraesCS3D01G441800 chr3B 82.051 312 48 7 1 307 803485195 803484887 5.260000e-65 259.0
13 TraesCS3D01G441800 chr3B 90.173 173 8 7 4891 5056 732432804 732432634 3.210000e-52 217.0
14 TraesCS3D01G441800 chr3B 92.414 145 10 1 309 453 201028665 201028522 6.950000e-49 206.0
15 TraesCS3D01G441800 chr7D 83.278 299 43 7 12 307 632808820 632809114 8.740000e-68 268.0
16 TraesCS3D01G441800 chr7D 87.356 87 11 0 467 553 51697587 51697501 3.370000e-17 100.0
17 TraesCS3D01G441800 chr7D 86.667 90 9 3 446 533 551502650 551502562 4.370000e-16 97.1
18 TraesCS3D01G441800 chr7D 78.571 126 16 10 4659 4774 605785909 605785785 7.360000e-09 73.1
19 TraesCS3D01G441800 chr2B 83.448 290 46 2 19 307 361655378 361655666 8.740000e-68 268.0
20 TraesCS3D01G441800 chr2B 81.877 309 52 4 1 307 11266526 11266220 1.890000e-64 257.0
21 TraesCS3D01G441800 chr2B 88.976 127 8 1 5152 5272 402089069 402089195 9.190000e-33 152.0
22 TraesCS3D01G441800 chr5B 82.838 303 44 5 11 305 403189269 403189571 1.130000e-66 265.0
23 TraesCS3D01G441800 chr5B 92.414 145 10 1 309 453 607838394 607838537 6.950000e-49 206.0
24 TraesCS3D01G441800 chr5B 91.781 146 11 1 308 453 554821190 554821046 8.990000e-48 202.0
25 TraesCS3D01G441800 chr5B 91.275 149 11 2 305 453 583291741 583291595 8.990000e-48 202.0
26 TraesCS3D01G441800 chr5B 85.294 68 3 6 4711 4771 616731565 616731632 4.430000e-06 63.9
27 TraesCS3D01G441800 chr5B 86.000 50 5 2 4735 4782 563165532 563165483 1.000000e-02 52.8
28 TraesCS3D01G441800 chrUn 81.994 311 48 7 1 306 306349991 306350298 1.890000e-64 257.0
29 TraesCS3D01G441800 chr2A 81.553 309 53 4 1 307 471704510 471704204 8.800000e-63 252.0
30 TraesCS3D01G441800 chr2D 88.136 177 15 4 1001 1173 200393187 200393361 6.950000e-49 206.0
31 TraesCS3D01G441800 chr2D 88.824 170 13 4 1002 1167 42603322 42603489 2.500000e-48 204.0
32 TraesCS3D01G441800 chr2D 81.651 109 14 5 467 570 638287344 638287237 9.450000e-13 86.1
33 TraesCS3D01G441800 chr6B 90.132 152 13 2 302 453 36133668 36133519 4.180000e-46 196.0
34 TraesCS3D01G441800 chr4D 91.034 145 11 2 309 453 479687264 479687406 1.500000e-45 195.0
35 TraesCS3D01G441800 chr4D 88.667 150 15 2 1018 1167 153050985 153051132 1.170000e-41 182.0
36 TraesCS3D01G441800 chr1D 91.034 145 12 1 309 453 435937659 435937516 1.500000e-45 195.0
37 TraesCS3D01G441800 chr1D 90.000 150 13 2 1018 1167 239784197 239784344 5.410000e-45 193.0
38 TraesCS3D01G441800 chr1D 83.193 119 13 4 459 572 423305735 423305851 9.380000e-18 102.0
39 TraesCS3D01G441800 chr1D 78.632 117 18 6 4665 4774 411125655 411125771 2.650000e-08 71.3
40 TraesCS3D01G441800 chr7A 89.116 147 14 2 1021 1167 578332300 578332156 1.170000e-41 182.0
41 TraesCS3D01G441800 chr7A 81.481 108 16 2 467 570 287885373 287885266 9.450000e-13 86.1
42 TraesCS3D01G441800 chr7A 81.481 108 16 4 459 562 631655112 631655005 9.450000e-13 86.1
43 TraesCS3D01G441800 chr4A 86.471 170 18 4 994 1159 675546734 675546902 1.170000e-41 182.0
44 TraesCS3D01G441800 chr1B 85.849 106 11 3 469 571 279191348 279191452 5.610000e-20 110.0
45 TraesCS3D01G441800 chr5D 80.000 140 16 7 4647 4779 218259580 218259446 5.650000e-15 93.5
46 TraesCS3D01G441800 chr5D 81.356 118 15 5 459 570 556621149 556621265 7.310000e-14 89.8
47 TraesCS3D01G441800 chr5D 87.931 58 2 4 4722 4774 57074226 57074169 4.430000e-06 63.9
48 TraesCS3D01G441800 chr5D 93.182 44 2 1 4735 4778 298277589 298277547 4.430000e-06 63.9
49 TraesCS3D01G441800 chr4B 100.000 28 0 0 4744 4771 659479873 659479900 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G441800 chr3D 551985941 551991236 5295 True 9780 9780 100.0000 1 5296 1 chr3D.!!$R2 5295
1 TraesCS3D01G441800 chr3A 688678417 688682799 4382 True 1566 3674 86.9330 862 5295 3 chr3A.!!$R1 4433
2 TraesCS3D01G441800 chr3B 732432426 732438312 5886 True 1122 2824 88.9574 1 5296 5 chr3B.!!$R3 5295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 748 0.038526 TTTCGAGACGAGAAGCCACC 60.039 55.0 0.00 0.0 37.14 4.61 F
1045 2147 0.105246 CTAGCCTGAGGACCATCCCT 60.105 60.0 0.65 0.0 37.19 4.20 F
2274 3532 0.107508 ATCACCCCATGCTTCTGTCG 60.108 55.0 0.00 0.0 0.00 4.35 F
3281 4575 0.040499 TCCATTGTTAAGGGCCACCC 59.960 55.0 6.18 0.0 45.90 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 3315 0.179100 CAGTGACTCGGCCACATAGG 60.179 60.0 2.24 0.0 37.01 2.57 R
3007 4290 0.037303 AGCGCCATATCCATTCCCTG 59.963 55.0 2.29 0.0 0.00 4.45 R
4123 5428 0.038310 AAGGCCTCTGTTTAGGGTGC 59.962 55.0 5.23 0.0 37.11 5.01 R
4889 6248 0.030638 TTGCCAGACAAAAGCTTCGC 59.969 50.0 0.00 0.0 34.56 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 4.584394 GCGGGATTGATACGTTTTTACAG 58.416 43.478 0.00 0.00 0.00 2.74
68 69 4.638865 GGGATTGATACGTTTTTACAGGCT 59.361 41.667 0.00 0.00 0.00 4.58
69 70 5.448632 GGGATTGATACGTTTTTACAGGCTG 60.449 44.000 14.16 14.16 0.00 4.85
100 101 5.687285 GCTGATTGACTTGAAAAATCGTTGT 59.313 36.000 0.00 0.00 33.83 3.32
114 115 0.165079 CGTTGTCCCGGTCAAAATCG 59.835 55.000 10.21 7.13 0.00 3.34
119 120 2.807392 TGTCCCGGTCAAAATCGTAAAC 59.193 45.455 0.00 0.00 0.00 2.01
125 126 5.224135 CCGGTCAAAATCGTAAACCAAATT 58.776 37.500 0.00 0.00 0.00 1.82
219 220 7.923414 ATGGGAGAACTTGATAAAGTGTTAC 57.077 36.000 0.00 0.00 32.47 2.50
230 231 9.191995 CTTGATAAAGTGTTACCCATTCAAAAC 57.808 33.333 0.00 0.00 0.00 2.43
231 232 7.662897 TGATAAAGTGTTACCCATTCAAAACC 58.337 34.615 0.00 0.00 0.00 3.27
234 235 2.624364 GTGTTACCCATTCAAAACCGGT 59.376 45.455 0.00 0.00 0.00 5.28
235 236 2.885894 TGTTACCCATTCAAAACCGGTC 59.114 45.455 8.04 0.00 0.00 4.79
242 243 1.803334 TTCAAAACCGGTCGATCCAG 58.197 50.000 8.04 0.00 35.57 3.86
273 274 3.192422 TGAACACCTCAATTAATTGCGGG 59.808 43.478 30.96 27.76 44.73 6.13
280 281 4.642885 CCTCAATTAATTGCGGGGTCTTAA 59.357 41.667 23.87 4.50 38.62 1.85
284 285 7.616313 TCAATTAATTGCGGGGTCTTAAAAAT 58.384 30.769 21.15 0.00 37.68 1.82
412 413 8.196802 TCTAAAATATGTGTATATGCATCCGC 57.803 34.615 0.19 0.00 39.24 5.54
428 429 4.686972 CATCCGCATATAGTCCATAGTGG 58.313 47.826 0.00 0.00 39.43 4.00
444 445 8.380742 TCCATAGTGGAATCTCTAAAAAGACT 57.619 34.615 0.00 0.00 45.00 3.24
487 488 3.308530 GCTTTGAGAAATTGTTGACCCG 58.691 45.455 0.00 0.00 0.00 5.28
511 512 3.194542 TCAAAATCGGGCGATCCAATTTT 59.805 39.130 0.00 2.35 38.60 1.82
542 543 6.708285 AGACCTTAATTGAATACGACACCTT 58.292 36.000 0.00 0.00 0.00 3.50
547 548 9.550811 CCTTAATTGAATACGACACCTTTAAAC 57.449 33.333 0.00 0.00 0.00 2.01
553 554 3.049708 ACGACACCTTTAAACCTAGGC 57.950 47.619 9.30 0.00 34.79 3.93
564 565 7.163441 CCTTTAAACCTAGGCTAGTGTTACAA 58.837 38.462 19.68 15.49 0.00 2.41
579 580 7.440523 AGTGTTACAAAGGATTAAGCTTCAG 57.559 36.000 0.00 0.00 0.00 3.02
631 632 0.667993 ATTATGATGTTTGCGCCCGG 59.332 50.000 4.18 0.00 0.00 5.73
633 634 0.813610 TATGATGTTTGCGCCCGGAG 60.814 55.000 0.73 0.00 0.00 4.63
640 641 2.951475 TTTGCGCCCGGAGTTTGACT 62.951 55.000 0.73 0.00 0.00 3.41
674 677 8.232913 TCTTGTAATTTGACTAAACTTTGCCT 57.767 30.769 0.00 0.00 0.00 4.75
678 681 8.637986 TGTAATTTGACTAAACTTTGCCTGAAT 58.362 29.630 0.00 0.00 0.00 2.57
687 690 4.307032 ACTTTGCCTGAATGGATGTACT 57.693 40.909 0.00 0.00 38.35 2.73
688 691 4.666512 ACTTTGCCTGAATGGATGTACTT 58.333 39.130 0.00 0.00 38.35 2.24
689 692 4.702131 ACTTTGCCTGAATGGATGTACTTC 59.298 41.667 0.10 0.10 38.35 3.01
690 693 3.281727 TGCCTGAATGGATGTACTTCC 57.718 47.619 18.66 18.66 38.35 3.46
691 694 2.846206 TGCCTGAATGGATGTACTTCCT 59.154 45.455 23.98 8.90 38.35 3.36
692 695 3.118261 TGCCTGAATGGATGTACTTCCTC 60.118 47.826 23.98 16.28 38.35 3.71
693 696 3.745797 GCCTGAATGGATGTACTTCCTCC 60.746 52.174 23.98 14.90 38.35 4.30
694 697 3.713764 CCTGAATGGATGTACTTCCTCCT 59.286 47.826 23.98 11.44 38.35 3.69
695 698 4.164988 CCTGAATGGATGTACTTCCTCCTT 59.835 45.833 23.98 16.00 38.35 3.36
696 699 5.366768 CCTGAATGGATGTACTTCCTCCTTA 59.633 44.000 23.98 8.00 38.35 2.69
697 700 6.126768 CCTGAATGGATGTACTTCCTCCTTAA 60.127 42.308 23.98 7.37 38.35 1.85
698 701 7.265599 TGAATGGATGTACTTCCTCCTTAAA 57.734 36.000 23.98 6.74 36.68 1.52
699 702 7.110155 TGAATGGATGTACTTCCTCCTTAAAC 58.890 38.462 23.98 10.42 36.68 2.01
700 703 6.636454 ATGGATGTACTTCCTCCTTAAACA 57.364 37.500 23.98 5.49 36.68 2.83
701 704 6.442541 TGGATGTACTTCCTCCTTAAACAA 57.557 37.500 23.98 2.06 36.68 2.83
702 705 6.843752 TGGATGTACTTCCTCCTTAAACAAA 58.156 36.000 23.98 1.61 36.68 2.83
703 706 7.466804 TGGATGTACTTCCTCCTTAAACAAAT 58.533 34.615 23.98 0.00 36.68 2.32
704 707 8.607713 TGGATGTACTTCCTCCTTAAACAAATA 58.392 33.333 23.98 1.05 36.68 1.40
705 708 9.628500 GGATGTACTTCCTCCTTAAACAAATAT 57.372 33.333 18.30 0.00 32.68 1.28
711 714 9.397280 ACTTCCTCCTTAAACAAATATAAGAGC 57.603 33.333 0.00 0.00 32.10 4.09
712 715 8.433421 TTCCTCCTTAAACAAATATAAGAGCG 57.567 34.615 0.00 0.00 32.10 5.03
713 716 7.562135 TCCTCCTTAAACAAATATAAGAGCGT 58.438 34.615 0.00 0.00 32.10 5.07
722 725 9.959749 AAACAAATATAAGAGCGTCAAGAAAAA 57.040 25.926 0.00 0.00 0.00 1.94
744 747 1.061485 GTTTCGAGACGAGAAGCCAC 58.939 55.000 0.00 0.00 37.14 5.01
745 748 0.038526 TTTCGAGACGAGAAGCCACC 60.039 55.000 0.00 0.00 37.14 4.61
746 749 2.196382 TTCGAGACGAGAAGCCACCG 62.196 60.000 0.00 0.00 37.14 4.94
765 1851 3.716195 CATCCAGCCACGTCCCCA 61.716 66.667 0.00 0.00 0.00 4.96
785 1871 2.813908 GTGGATGACGTGGACCGC 60.814 66.667 0.00 0.00 41.42 5.68
790 1876 3.338126 ATGACGTGGACCGCGACTC 62.338 63.158 32.86 20.79 39.94 3.36
923 2011 1.463214 TTCCACCCCAAGAGCAGGA 60.463 57.895 0.00 0.00 0.00 3.86
926 2014 2.121963 ACCCCAAGAGCAGGACCA 60.122 61.111 0.00 0.00 0.00 4.02
949 2037 4.083057 AGCTTCTTTCTTCCGCTTGATTTC 60.083 41.667 0.00 0.00 0.00 2.17
1034 2136 2.359169 CGAGCAACCCCTAGCCTGA 61.359 63.158 0.00 0.00 0.00 3.86
1035 2137 1.524482 GAGCAACCCCTAGCCTGAG 59.476 63.158 0.00 0.00 0.00 3.35
1042 2144 1.124477 CCCCTAGCCTGAGGACCATC 61.124 65.000 0.65 0.00 39.15 3.51
1044 2146 1.124477 CCTAGCCTGAGGACCATCCC 61.124 65.000 0.65 0.00 39.15 3.85
1045 2147 0.105246 CTAGCCTGAGGACCATCCCT 60.105 60.000 0.65 0.00 37.19 4.20
1046 2148 0.399091 TAGCCTGAGGACCATCCCTG 60.399 60.000 0.65 0.00 37.19 4.45
1251 2359 1.746615 CATCCTGCACCGGGACAAG 60.747 63.158 6.32 0.00 42.23 3.16
1368 2476 0.677842 ACAGGAAGAAAGGTACGCGT 59.322 50.000 19.17 19.17 0.00 6.01
1381 2489 2.534757 GGTACGCGTATCTCTTCTTTGC 59.465 50.000 23.56 4.38 0.00 3.68
1397 2505 1.179152 TTGCTGCCATTGGTCTCATG 58.821 50.000 4.26 0.00 0.00 3.07
1416 2532 1.686052 TGGCTCCATGTCAAAAACCAC 59.314 47.619 0.00 0.00 0.00 4.16
1430 2546 4.320608 AAAACCACTGCGAAATGAATGT 57.679 36.364 0.00 0.00 0.00 2.71
1443 2559 6.507361 CGAAATGAATGTTTGTTTGATGTCG 58.493 36.000 0.00 0.00 0.00 4.35
1452 2568 3.010624 TGTTTGATGTCGCCATTGTTG 57.989 42.857 0.00 0.00 0.00 3.33
1453 2569 2.288091 TGTTTGATGTCGCCATTGTTGG 60.288 45.455 0.00 0.00 46.66 3.77
1471 2587 4.640201 TGTTGGCAGGAGTATATTCTTTGC 59.360 41.667 13.13 13.13 0.00 3.68
1476 2592 6.055588 GGCAGGAGTATATTCTTTGCAGTAA 58.944 40.000 19.03 0.00 33.31 2.24
1479 2595 7.281100 GCAGGAGTATATTCTTTGCAGTAACTT 59.719 37.037 15.24 0.00 32.55 2.66
1508 2625 7.158021 ACATAGCAATCTGATTCTAGCCTAAC 58.842 38.462 0.00 0.00 0.00 2.34
1512 2629 5.226396 CAATCTGATTCTAGCCTAACGAGG 58.774 45.833 0.00 0.00 46.93 4.63
1518 2635 7.390996 TCTGATTCTAGCCTAACGAGGTTATAG 59.609 40.741 0.00 0.00 45.78 1.31
1524 2641 3.988517 GCCTAACGAGGTTATAGATGTGC 59.011 47.826 0.00 0.00 45.78 4.57
1536 2657 1.675641 GATGTGCCGCTCCTGGTTT 60.676 57.895 0.00 0.00 0.00 3.27
1537 2658 0.392461 GATGTGCCGCTCCTGGTTTA 60.392 55.000 0.00 0.00 0.00 2.01
1539 2660 0.676466 TGTGCCGCTCCTGGTTTATG 60.676 55.000 0.00 0.00 0.00 1.90
1540 2661 0.676782 GTGCCGCTCCTGGTTTATGT 60.677 55.000 0.00 0.00 0.00 2.29
1541 2662 0.676466 TGCCGCTCCTGGTTTATGTG 60.676 55.000 0.00 0.00 0.00 3.21
1544 2665 1.369625 CGCTCCTGGTTTATGTGTCC 58.630 55.000 0.00 0.00 0.00 4.02
1546 2667 2.633488 GCTCCTGGTTTATGTGTCCTC 58.367 52.381 0.00 0.00 0.00 3.71
1547 2668 2.237392 GCTCCTGGTTTATGTGTCCTCT 59.763 50.000 0.00 0.00 0.00 3.69
1548 2669 3.451178 GCTCCTGGTTTATGTGTCCTCTA 59.549 47.826 0.00 0.00 0.00 2.43
1551 2672 5.989477 TCCTGGTTTATGTGTCCTCTATTG 58.011 41.667 0.00 0.00 0.00 1.90
1553 2674 5.110814 TGGTTTATGTGTCCTCTATTGGG 57.889 43.478 0.00 0.00 0.00 4.12
1554 2675 3.883489 GGTTTATGTGTCCTCTATTGGGC 59.117 47.826 0.00 0.00 0.00 5.36
1555 2676 4.385310 GGTTTATGTGTCCTCTATTGGGCT 60.385 45.833 0.00 0.00 31.91 5.19
1560 2681 2.769095 GTGTCCTCTATTGGGCTCTCTT 59.231 50.000 0.00 0.00 31.91 2.85
1563 2684 5.071115 GTGTCCTCTATTGGGCTCTCTTATT 59.929 44.000 0.00 0.00 31.91 1.40
1576 2697 4.399934 GCTCTCTTATTATACGAGGGGGAG 59.600 50.000 7.56 0.00 0.00 4.30
1580 2701 4.527038 TCTTATTATACGAGGGGGAGCAAG 59.473 45.833 0.00 0.00 0.00 4.01
1581 2702 2.464796 TTATACGAGGGGGAGCAAGA 57.535 50.000 0.00 0.00 0.00 3.02
1582 2703 1.996798 TATACGAGGGGGAGCAAGAG 58.003 55.000 0.00 0.00 0.00 2.85
1583 2704 0.261991 ATACGAGGGGGAGCAAGAGA 59.738 55.000 0.00 0.00 0.00 3.10
1585 2706 1.261238 ACGAGGGGGAGCAAGAGAAG 61.261 60.000 0.00 0.00 0.00 2.85
1586 2707 0.972983 CGAGGGGGAGCAAGAGAAGA 60.973 60.000 0.00 0.00 0.00 2.87
1587 2708 0.829990 GAGGGGGAGCAAGAGAAGAG 59.170 60.000 0.00 0.00 0.00 2.85
1588 2709 0.415429 AGGGGGAGCAAGAGAAGAGA 59.585 55.000 0.00 0.00 0.00 3.10
1592 2837 3.308760 GGGGGAGCAAGAGAAGAGATTTT 60.309 47.826 0.00 0.00 0.00 1.82
1665 2910 1.479730 GAGGTTAACGGGGTCGAAGAT 59.520 52.381 0.00 0.00 40.67 2.40
1692 2937 3.529341 TTTCCGCTCGCTCCAAGCA 62.529 57.895 0.00 0.00 42.58 3.91
1707 2952 1.192146 AAGCACTGGCCGTTCCTCTA 61.192 55.000 0.00 0.00 42.56 2.43
1713 2958 0.393808 TGGCCGTTCCTCTAATTGGC 60.394 55.000 0.00 0.00 39.51 4.52
1796 3041 9.912634 GAGTGATTGATTTTCCAAAATACTTGA 57.087 29.630 0.00 0.00 38.64 3.02
1797 3042 9.918630 AGTGATTGATTTTCCAAAATACTTGAG 57.081 29.630 0.00 0.00 38.64 3.02
1799 3044 7.818930 TGATTGATTTTCCAAAATACTTGAGCC 59.181 33.333 0.00 0.00 38.64 4.70
1800 3045 6.036577 TGATTTTCCAAAATACTTGAGCCC 57.963 37.500 0.00 0.00 38.64 5.19
1803 3055 2.432444 TCCAAAATACTTGAGCCCACG 58.568 47.619 0.00 0.00 0.00 4.94
1821 3073 1.139058 ACGGGCTTCTGCTAACCTATG 59.861 52.381 0.00 0.00 39.59 2.23
1827 3079 4.944317 GGCTTCTGCTAACCTATGAAGTTT 59.056 41.667 0.00 0.00 37.17 2.66
1844 3096 3.836949 AGTTTTGCAGATTTATGGTGCG 58.163 40.909 0.00 0.00 40.23 5.34
1862 3114 0.603707 CGGAGAAACTTCAGCAGGCA 60.604 55.000 0.00 0.00 0.00 4.75
1907 3159 2.167900 ACCTCTTCTAACGGTATGTGCC 59.832 50.000 0.00 0.00 0.00 5.01
1908 3160 2.167693 CCTCTTCTAACGGTATGTGCCA 59.832 50.000 0.00 0.00 0.00 4.92
1931 3183 2.159170 TGTGGCCAAGTAGTTGCAAAAC 60.159 45.455 7.24 2.49 31.64 2.43
1932 3184 2.103373 TGGCCAAGTAGTTGCAAAACA 58.897 42.857 0.61 0.00 31.64 2.83
1957 3209 8.508875 CATTACTCTATTGCATTGCATGACATA 58.491 33.333 12.95 6.39 38.76 2.29
1959 3211 7.142306 ACTCTATTGCATTGCATGACATATC 57.858 36.000 12.95 0.00 38.76 1.63
1973 3226 3.951680 TGACATATCGTCTGAAGGTAGCA 59.048 43.478 0.00 0.00 45.60 3.49
1986 3239 7.817962 GTCTGAAGGTAGCAAGTAGTCATAAAA 59.182 37.037 0.00 0.00 0.00 1.52
2009 3262 5.869753 CCATACTCTTATATGGCTGCAAC 57.130 43.478 0.50 0.00 43.95 4.17
2010 3263 4.697352 CCATACTCTTATATGGCTGCAACC 59.303 45.833 0.00 0.00 43.95 3.77
2011 3264 3.214696 ACTCTTATATGGCTGCAACCC 57.785 47.619 3.10 0.00 0.00 4.11
2012 3265 2.509548 ACTCTTATATGGCTGCAACCCA 59.490 45.455 3.10 5.92 36.66 4.51
2013 3266 3.139025 ACTCTTATATGGCTGCAACCCAT 59.861 43.478 19.17 19.17 44.85 4.00
2014 3267 4.350816 ACTCTTATATGGCTGCAACCCATA 59.649 41.667 21.53 21.53 46.28 2.74
2015 3268 4.651778 TCTTATATGGCTGCAACCCATAC 58.348 43.478 21.64 0.00 45.36 2.39
2016 3269 4.350816 TCTTATATGGCTGCAACCCATACT 59.649 41.667 21.64 15.18 45.36 2.12
2017 3270 2.346766 TATGGCTGCAACCCATACTG 57.653 50.000 17.49 0.00 42.78 2.74
2018 3271 0.625316 ATGGCTGCAACCCATACTGA 59.375 50.000 15.04 0.00 41.17 3.41
2019 3272 0.403655 TGGCTGCAACCCATACTGAA 59.596 50.000 3.10 0.00 0.00 3.02
2020 3273 1.098050 GGCTGCAACCCATACTGAAG 58.902 55.000 0.50 0.00 0.00 3.02
2021 3274 1.614317 GGCTGCAACCCATACTGAAGT 60.614 52.381 0.50 0.00 0.00 3.01
2022 3275 1.470098 GCTGCAACCCATACTGAAGTG 59.530 52.381 0.00 0.00 0.00 3.16
2023 3276 2.875672 GCTGCAACCCATACTGAAGTGA 60.876 50.000 0.00 0.00 0.00 3.41
2024 3277 3.614092 CTGCAACCCATACTGAAGTGAT 58.386 45.455 0.00 0.00 0.00 3.06
2025 3278 3.346315 TGCAACCCATACTGAAGTGATG 58.654 45.455 0.00 0.00 0.00 3.07
2026 3279 2.684881 GCAACCCATACTGAAGTGATGG 59.315 50.000 9.94 9.94 39.96 3.51
2027 3280 3.622206 GCAACCCATACTGAAGTGATGGA 60.622 47.826 15.07 0.00 42.41 3.41
2028 3281 4.194640 CAACCCATACTGAAGTGATGGAG 58.805 47.826 15.07 10.29 42.41 3.86
2029 3282 3.724478 ACCCATACTGAAGTGATGGAGA 58.276 45.455 15.07 0.00 42.41 3.71
2030 3283 3.708631 ACCCATACTGAAGTGATGGAGAG 59.291 47.826 15.07 6.44 42.41 3.20
2031 3284 3.494048 CCCATACTGAAGTGATGGAGAGC 60.494 52.174 15.07 0.00 42.41 4.09
2032 3285 3.494048 CCATACTGAAGTGATGGAGAGCC 60.494 52.174 10.83 0.00 42.41 4.70
2033 3286 1.949799 ACTGAAGTGATGGAGAGCCT 58.050 50.000 0.00 0.00 34.31 4.58
2034 3287 3.107402 ACTGAAGTGATGGAGAGCCTA 57.893 47.619 0.00 0.00 34.31 3.93
2035 3288 3.445008 ACTGAAGTGATGGAGAGCCTAA 58.555 45.455 0.00 0.00 34.31 2.69
2036 3289 3.840666 ACTGAAGTGATGGAGAGCCTAAA 59.159 43.478 0.00 0.00 34.31 1.85
2037 3290 4.187694 CTGAAGTGATGGAGAGCCTAAAC 58.812 47.826 0.00 0.00 34.31 2.01
2038 3291 3.582647 TGAAGTGATGGAGAGCCTAAACA 59.417 43.478 0.00 0.00 34.31 2.83
2039 3292 3.618690 AGTGATGGAGAGCCTAAACAC 57.381 47.619 0.00 0.00 34.31 3.32
2040 3293 2.906389 AGTGATGGAGAGCCTAAACACA 59.094 45.455 0.00 0.00 34.31 3.72
2041 3294 3.327757 AGTGATGGAGAGCCTAAACACAA 59.672 43.478 0.00 0.00 34.31 3.33
2042 3295 4.072131 GTGATGGAGAGCCTAAACACAAA 58.928 43.478 0.00 0.00 34.31 2.83
2043 3296 4.072131 TGATGGAGAGCCTAAACACAAAC 58.928 43.478 0.00 0.00 34.31 2.93
2044 3297 2.858745 TGGAGAGCCTAAACACAAACC 58.141 47.619 0.00 0.00 34.31 3.27
2045 3298 2.441750 TGGAGAGCCTAAACACAAACCT 59.558 45.455 0.00 0.00 34.31 3.50
2046 3299 3.075148 GGAGAGCCTAAACACAAACCTC 58.925 50.000 0.00 0.00 0.00 3.85
2047 3300 3.244596 GGAGAGCCTAAACACAAACCTCT 60.245 47.826 0.00 0.00 0.00 3.69
2048 3301 4.390264 GAGAGCCTAAACACAAACCTCTT 58.610 43.478 0.00 0.00 0.00 2.85
2049 3302 4.390264 AGAGCCTAAACACAAACCTCTTC 58.610 43.478 0.00 0.00 0.00 2.87
2050 3303 4.103311 AGAGCCTAAACACAAACCTCTTCT 59.897 41.667 0.00 0.00 0.00 2.85
2051 3304 4.793201 AGCCTAAACACAAACCTCTTCTT 58.207 39.130 0.00 0.00 0.00 2.52
2052 3305 5.937111 AGCCTAAACACAAACCTCTTCTTA 58.063 37.500 0.00 0.00 0.00 2.10
2053 3306 5.763698 AGCCTAAACACAAACCTCTTCTTAC 59.236 40.000 0.00 0.00 0.00 2.34
2054 3307 5.333875 GCCTAAACACAAACCTCTTCTTACG 60.334 44.000 0.00 0.00 0.00 3.18
2055 3308 5.178809 CCTAAACACAAACCTCTTCTTACGG 59.821 44.000 0.00 0.00 0.00 4.02
2056 3309 3.832615 ACACAAACCTCTTCTTACGGT 57.167 42.857 0.00 0.00 0.00 4.83
2057 3310 4.942761 ACACAAACCTCTTCTTACGGTA 57.057 40.909 0.00 0.00 0.00 4.02
2058 3311 5.479124 ACACAAACCTCTTCTTACGGTAT 57.521 39.130 0.00 0.00 0.00 2.73
2059 3312 5.235516 ACACAAACCTCTTCTTACGGTATG 58.764 41.667 0.00 0.00 0.00 2.39
2060 3313 4.092968 CACAAACCTCTTCTTACGGTATGC 59.907 45.833 0.00 0.00 0.00 3.14
2061 3314 2.865343 ACCTCTTCTTACGGTATGCG 57.135 50.000 0.00 0.00 0.00 4.73
2062 3315 1.202382 ACCTCTTCTTACGGTATGCGC 60.202 52.381 0.00 0.00 0.00 6.09
2063 3316 1.488527 CTCTTCTTACGGTATGCGCC 58.511 55.000 4.18 0.00 0.00 6.53
2064 3317 1.067212 CTCTTCTTACGGTATGCGCCT 59.933 52.381 4.18 0.00 0.00 5.52
2065 3318 2.292569 CTCTTCTTACGGTATGCGCCTA 59.707 50.000 4.18 0.00 0.00 3.93
2066 3319 2.889045 TCTTCTTACGGTATGCGCCTAT 59.111 45.455 4.18 0.00 0.00 2.57
2067 3320 2.717580 TCTTACGGTATGCGCCTATG 57.282 50.000 4.18 0.00 0.00 2.23
2068 3321 1.958579 TCTTACGGTATGCGCCTATGT 59.041 47.619 4.18 5.39 0.00 2.29
2069 3322 2.058798 CTTACGGTATGCGCCTATGTG 58.941 52.381 4.18 0.00 0.00 3.21
2070 3323 0.315886 TACGGTATGCGCCTATGTGG 59.684 55.000 4.18 0.00 39.35 4.17
2109 3362 3.137544 TGTACTGAAGTGGTGGATTGGTT 59.862 43.478 0.00 0.00 0.00 3.67
2135 3391 8.141909 TGTATATGTCCTTTTAGAAGACGATGG 58.858 37.037 0.00 0.00 34.71 3.51
2168 3424 7.707624 TTTTCTCTTATGAATTGTGGCATCT 57.292 32.000 0.00 0.00 0.00 2.90
2179 3435 6.945435 TGAATTGTGGCATCTCCTAACTTTTA 59.055 34.615 0.00 0.00 35.26 1.52
2183 3439 6.303839 TGTGGCATCTCCTAACTTTTAAACT 58.696 36.000 0.00 0.00 35.26 2.66
2190 3446 9.706691 CATCTCCTAACTTTTAAACTGTAGTCA 57.293 33.333 0.00 0.00 0.00 3.41
2232 3488 6.498304 CGCATTTCTTCCTTACTGCATATTT 58.502 36.000 0.00 0.00 0.00 1.40
2233 3489 6.974622 CGCATTTCTTCCTTACTGCATATTTT 59.025 34.615 0.00 0.00 0.00 1.82
2260 3518 6.291377 TCCACTATGCATTCTTCTAATCACC 58.709 40.000 3.54 0.00 0.00 4.02
2262 3520 5.471456 CACTATGCATTCTTCTAATCACCCC 59.529 44.000 3.54 0.00 0.00 4.95
2271 3529 3.565764 TCTAATCACCCCATGCTTCTG 57.434 47.619 0.00 0.00 0.00 3.02
2274 3532 0.107508 ATCACCCCATGCTTCTGTCG 60.108 55.000 0.00 0.00 0.00 4.35
2279 3537 1.200020 CCCCATGCTTCTGTCGTTTTC 59.800 52.381 0.00 0.00 0.00 2.29
2286 3544 6.183360 CCATGCTTCTGTCGTTTTCATAATCT 60.183 38.462 0.00 0.00 0.00 2.40
2334 3592 3.192422 TGGATGACCCTTTTGTAATTGCG 59.808 43.478 0.00 0.00 35.38 4.85
2359 3617 3.370846 CCTTCTGCCACCATCTGTTATGA 60.371 47.826 0.00 0.00 0.00 2.15
2430 3688 2.863809 ACAAATCCAGTTCTGTCCACC 58.136 47.619 0.00 0.00 0.00 4.61
2529 3787 6.475596 TTACTGTATGTAGGGGTCTAAAGC 57.524 41.667 0.00 0.00 32.08 3.51
2678 3938 3.941483 CCAGTATCACATTGTTGGGAGAC 59.059 47.826 0.00 0.00 45.82 3.36
2683 3943 1.800586 CACATTGTTGGGAGACACTCG 59.199 52.381 0.00 0.00 0.00 4.18
2770 4041 9.097257 ACATCCTTGTATTCAAAACAAAGTTTG 57.903 29.630 14.13 14.13 36.46 2.93
2786 4061 8.268850 ACAAAGTTTGAGCTACCTGTAATATG 57.731 34.615 22.23 0.00 0.00 1.78
2787 4062 6.927294 AAGTTTGAGCTACCTGTAATATGC 57.073 37.500 0.00 0.00 0.00 3.14
2803 4078 1.028330 ATGCAGTGCCTCATCGTTGG 61.028 55.000 13.72 0.00 0.00 3.77
2825 4100 6.126409 TGGTAGAAATTCACAAGAGGTTTGT 58.874 36.000 0.00 0.00 0.00 2.83
2873 4156 5.688766 GCTCCAATCTGCTAAGGGTCTTAAT 60.689 44.000 0.00 0.00 0.00 1.40
2880 4163 3.388024 TGCTAAGGGTCTTAATCGAGCAT 59.612 43.478 0.00 0.00 33.95 3.79
2894 4177 2.094026 TCGAGCATTGTAGACTGCACAT 60.094 45.455 5.01 0.00 40.88 3.21
2905 4188 4.298103 AGACTGCACATCATCTTTCCTT 57.702 40.909 0.00 0.00 0.00 3.36
2915 4198 6.656693 CACATCATCTTTCCTTGTTCTACCTT 59.343 38.462 0.00 0.00 0.00 3.50
2922 4205 7.940850 TCTTTCCTTGTTCTACCTTTGAAATG 58.059 34.615 0.00 0.00 0.00 2.32
2928 4211 9.014297 CCTTGTTCTACCTTTGAAATGAATAGT 57.986 33.333 0.00 0.00 0.00 2.12
2930 4213 9.567776 TTGTTCTACCTTTGAAATGAATAGTGA 57.432 29.630 0.00 0.00 0.00 3.41
2942 4225 8.650490 TGAAATGAATAGTGAGGATGCAGTATA 58.350 33.333 0.00 0.00 34.23 1.47
2958 4241 5.046231 TGCAGTATACCTGTACATGGTTGAA 60.046 40.000 18.25 6.45 43.55 2.69
2960 4243 6.017934 GCAGTATACCTGTACATGGTTGAATG 60.018 42.308 18.25 15.98 43.55 2.67
2962 4245 7.011389 CAGTATACCTGTACATGGTTGAATGTG 59.989 40.741 18.25 8.52 36.61 3.21
2995 4278 5.362717 TCTCTTCACAGAACACCACTCTTTA 59.637 40.000 0.00 0.00 0.00 1.85
2998 4281 7.054124 TCTTCACAGAACACCACTCTTTATTT 58.946 34.615 0.00 0.00 0.00 1.40
3000 4283 7.259290 TCACAGAACACCACTCTTTATTTTC 57.741 36.000 0.00 0.00 0.00 2.29
3002 4285 5.147162 CAGAACACCACTCTTTATTTTCGC 58.853 41.667 0.00 0.00 0.00 4.70
3007 4290 5.147162 CACCACTCTTTATTTTCGCTGTTC 58.853 41.667 0.00 0.00 0.00 3.18
3057 4340 5.539955 GCTTAATAATGGTGGATGGGTTCAT 59.460 40.000 0.00 0.00 36.09 2.57
3083 4366 3.830744 TCCTGAAGGAAGTCGTTCAAA 57.169 42.857 15.14 6.27 46.06 2.69
3087 4370 4.319177 CTGAAGGAAGTCGTTCAAAGGAT 58.681 43.478 15.14 0.00 46.06 3.24
3136 4419 4.040584 AGAGAGGTGTTGGAAGGTTAGAAC 59.959 45.833 0.00 0.00 0.00 3.01
3137 4420 3.714798 AGAGGTGTTGGAAGGTTAGAACA 59.285 43.478 0.00 0.00 0.00 3.18
3156 4439 7.145932 AGAACATTATTTCCTTGTACTGTGC 57.854 36.000 0.00 0.00 0.00 4.57
3157 4440 6.942576 AGAACATTATTTCCTTGTACTGTGCT 59.057 34.615 0.00 0.00 0.00 4.40
3158 4441 8.100791 AGAACATTATTTCCTTGTACTGTGCTA 58.899 33.333 0.00 0.00 0.00 3.49
3159 4442 8.807948 AACATTATTTCCTTGTACTGTGCTAT 57.192 30.769 0.00 0.00 0.00 2.97
3180 4463 7.801752 GCTATCTGCAATTATTAGTGAACTCC 58.198 38.462 0.00 0.00 42.31 3.85
3184 4467 7.624549 TCTGCAATTATTAGTGAACTCCTCTT 58.375 34.615 0.00 0.00 0.00 2.85
3185 4468 7.550551 TCTGCAATTATTAGTGAACTCCTCTTG 59.449 37.037 0.00 0.00 0.00 3.02
3196 4479 7.339482 AGTGAACTCCTCTTGACTTACTTTTT 58.661 34.615 0.00 0.00 0.00 1.94
3243 4526 6.667370 TGCATATATGTATCAGTTTTTGCGG 58.333 36.000 14.14 0.00 0.00 5.69
3244 4527 6.262049 TGCATATATGTATCAGTTTTTGCGGT 59.738 34.615 14.14 0.00 0.00 5.68
3247 4530 8.559536 CATATATGTATCAGTTTTTGCGGTCTT 58.440 33.333 4.43 0.00 0.00 3.01
3248 4531 5.705609 ATGTATCAGTTTTTGCGGTCTTT 57.294 34.783 0.00 0.00 0.00 2.52
3249 4532 4.854399 TGTATCAGTTTTTGCGGTCTTTG 58.146 39.130 0.00 0.00 0.00 2.77
3271 4565 9.360093 CTTTGTTGTAGTTTTTGTCCATTGTTA 57.640 29.630 0.00 0.00 0.00 2.41
3275 4569 7.045126 TGTAGTTTTTGTCCATTGTTAAGGG 57.955 36.000 0.00 0.00 0.00 3.95
3276 4570 4.956085 AGTTTTTGTCCATTGTTAAGGGC 58.044 39.130 0.00 0.00 30.92 5.19
3281 4575 0.040499 TCCATTGTTAAGGGCCACCC 59.960 55.000 6.18 0.00 45.90 4.61
3291 4585 1.216977 GGGCCACCCGTTTAATTGC 59.783 57.895 4.39 0.00 32.13 3.56
3295 4589 1.544246 GCCACCCGTTTAATTGCTCTT 59.456 47.619 0.00 0.00 0.00 2.85
3299 4593 4.684242 CCACCCGTTTAATTGCTCTTTTTC 59.316 41.667 0.00 0.00 0.00 2.29
3304 4598 6.582672 CCCGTTTAATTGCTCTTTTTCTTCTC 59.417 38.462 0.00 0.00 0.00 2.87
3317 4612 6.942576 TCTTTTTCTTCTCCTTACCAGATTGG 59.057 38.462 0.00 0.00 45.02 3.16
3525 4824 2.200373 AGGTGATAGTGGTTGTTGGC 57.800 50.000 0.00 0.00 0.00 4.52
3642 4941 4.400109 CAGCGGCTGCAGCAACTG 62.400 66.667 37.63 34.77 46.23 3.16
3694 4993 0.606673 GAAGGCCGAGCTCCAAAACT 60.607 55.000 8.47 0.00 0.00 2.66
3780 5082 1.408683 GGCATAGGGAACATGCTGTCA 60.409 52.381 7.20 0.00 46.44 3.58
3781 5083 1.945394 GCATAGGGAACATGCTGTCAG 59.055 52.381 0.00 0.00 44.35 3.51
3813 5115 2.543067 ATTCGTCAGCCCAAGAGCCC 62.543 60.000 0.00 0.00 0.00 5.19
3858 5163 2.252260 CTGGCGGAACAAAGCGTG 59.748 61.111 0.00 0.00 0.00 5.34
3936 5241 1.667154 CTCCAATCTCTCGCGTCCCA 61.667 60.000 5.77 0.00 0.00 4.37
4110 5415 2.937689 ATGCCCAGGTGGAGCACT 60.938 61.111 12.60 2.96 41.69 4.40
4117 5422 0.954449 CAGGTGGAGCACTGCTTGAG 60.954 60.000 4.67 0.00 39.88 3.02
4118 5423 1.123861 AGGTGGAGCACTGCTTGAGA 61.124 55.000 4.67 0.00 39.88 3.27
4123 5428 1.202627 GGAGCACTGCTTGAGATAGGG 60.203 57.143 4.67 0.00 39.88 3.53
4125 5430 0.107508 GCACTGCTTGAGATAGGGCA 60.108 55.000 0.00 0.00 40.50 5.36
4156 5465 2.039879 GAGGCCTTCCCTTTTGTACAGA 59.960 50.000 6.77 0.00 46.60 3.41
4162 5471 5.631481 GCCTTCCCTTTTGTACAGATATCCA 60.631 44.000 0.00 0.00 0.00 3.41
4183 5492 1.445582 AAGGACGCCGACACGAATC 60.446 57.895 0.00 0.00 36.70 2.52
4196 5505 5.452777 CGACACGAATCTAGATAGAATGCA 58.547 41.667 5.46 0.00 35.69 3.96
4207 5517 7.923888 TCTAGATAGAATGCATCTGTTTTTGC 58.076 34.615 0.00 0.00 39.30 3.68
4215 5525 2.222445 GCATCTGTTTTTGCTTTGCTGG 59.778 45.455 0.00 0.00 35.95 4.85
4237 5548 1.884067 GCTGGCAGTTTTGGAGCTAGT 60.884 52.381 17.16 0.00 38.85 2.57
4239 5550 3.003480 CTGGCAGTTTTGGAGCTAGTAC 58.997 50.000 6.28 0.00 32.94 2.73
4324 5643 5.316167 TGAAGTCAGGTTTGATGTAAGCAT 58.684 37.500 0.00 0.00 35.39 3.79
4343 5664 3.374058 GCATATGTCGGCTTGTTAAGTGT 59.626 43.478 4.29 0.00 0.00 3.55
4411 5747 1.904537 TCTTGCCAGAGAAGATGAGCA 59.095 47.619 0.00 0.00 0.00 4.26
4423 5759 4.765856 AGAAGATGAGCATGCACTCTTTTT 59.234 37.500 21.98 9.11 37.58 1.94
4438 5775 6.974622 GCACTCTTTTTGAAAATGAAGTCTCA 59.025 34.615 7.51 0.00 35.56 3.27
4509 5846 3.604582 CACCATTCTCTGAGGTTTCTCC 58.395 50.000 4.59 0.00 39.23 3.71
4543 5880 8.029642 TCGTGATCAATTTTCTTTCTAGAACC 57.970 34.615 4.18 0.00 40.04 3.62
4584 5921 7.086376 CAGTAGCAGTTGCATCTGTTATTTTT 58.914 34.615 22.50 8.57 45.16 1.94
4624 5961 5.249780 TCTTTTCAATAAGGGTGTGGCTA 57.750 39.130 0.00 0.00 0.00 3.93
4625 5962 5.253330 TCTTTTCAATAAGGGTGTGGCTAG 58.747 41.667 0.00 0.00 0.00 3.42
4626 5963 3.644966 TTCAATAAGGGTGTGGCTAGG 57.355 47.619 0.00 0.00 0.00 3.02
4629 5966 3.332485 TCAATAAGGGTGTGGCTAGGTTT 59.668 43.478 0.00 0.00 0.00 3.27
4631 5968 2.767644 AAGGGTGTGGCTAGGTTTTT 57.232 45.000 0.00 0.00 0.00 1.94
4632 5969 1.995376 AGGGTGTGGCTAGGTTTTTG 58.005 50.000 0.00 0.00 0.00 2.44
4633 5970 1.497286 AGGGTGTGGCTAGGTTTTTGA 59.503 47.619 0.00 0.00 0.00 2.69
4634 5971 1.886542 GGGTGTGGCTAGGTTTTTGAG 59.113 52.381 0.00 0.00 0.00 3.02
4635 5972 2.488347 GGGTGTGGCTAGGTTTTTGAGA 60.488 50.000 0.00 0.00 0.00 3.27
4637 5974 3.477530 GTGTGGCTAGGTTTTTGAGACT 58.522 45.455 0.00 0.00 0.00 3.24
4638 5975 3.883489 GTGTGGCTAGGTTTTTGAGACTT 59.117 43.478 0.00 0.00 0.00 3.01
4639 5976 4.023963 GTGTGGCTAGGTTTTTGAGACTTC 60.024 45.833 0.00 0.00 0.00 3.01
4640 5977 3.186613 GTGGCTAGGTTTTTGAGACTTCG 59.813 47.826 0.00 0.00 0.00 3.79
4641 5978 2.159824 GGCTAGGTTTTTGAGACTTCGC 59.840 50.000 0.00 0.00 0.00 4.70
4642 5979 2.159827 GCTAGGTTTTTGAGACTTCGCG 60.160 50.000 0.00 0.00 0.00 5.87
4645 5992 1.398578 GGTTTTTGAGACTTCGCGAGC 60.399 52.381 9.59 2.99 0.00 5.03
4653 6000 0.737715 GACTTCGCGAGCCAAGTGAT 60.738 55.000 15.43 0.00 32.83 3.06
4657 6004 0.737367 TCGCGAGCCAAGTGATTGAG 60.737 55.000 3.71 0.00 0.00 3.02
4663 6010 3.059120 CGAGCCAAGTGATTGAGCATATG 60.059 47.826 0.00 0.00 0.00 1.78
4672 6019 8.403236 CAAGTGATTGAGCATATGAAAAGATGA 58.597 33.333 6.97 0.00 0.00 2.92
4673 6020 8.515695 AGTGATTGAGCATATGAAAAGATGAA 57.484 30.769 6.97 0.00 0.00 2.57
4674 6021 8.963725 AGTGATTGAGCATATGAAAAGATGAAA 58.036 29.630 6.97 0.00 0.00 2.69
4675 6022 9.234384 GTGATTGAGCATATGAAAAGATGAAAG 57.766 33.333 6.97 0.00 0.00 2.62
4676 6023 9.181061 TGATTGAGCATATGAAAAGATGAAAGA 57.819 29.630 6.97 0.00 0.00 2.52
4773 6120 6.116680 CAGTTGACTGAGATTTAGCAATCC 57.883 41.667 5.19 0.00 46.59 3.01
4837 6184 7.184022 AGGGGAATTCAGTAAATTAGGTACAGT 59.816 37.037 7.93 0.00 37.70 3.55
4859 6218 7.672239 ACAGTAGATCTCAAGAGTTACTTCCTT 59.328 37.037 0.00 0.00 36.61 3.36
4860 6219 8.188139 CAGTAGATCTCAAGAGTTACTTCCTTC 58.812 40.741 0.00 0.00 36.61 3.46
4864 6223 9.315363 AGATCTCAAGAGTTACTTCCTTCTTTA 57.685 33.333 0.00 0.00 36.61 1.85
4865 6224 9.930693 GATCTCAAGAGTTACTTCCTTCTTTAA 57.069 33.333 0.00 0.00 36.61 1.52
4878 6237 7.862873 ACTTCCTTCTTTAATTTTTCTTGAGCG 59.137 33.333 0.00 0.00 0.00 5.03
4879 6238 7.504924 TCCTTCTTTAATTTTTCTTGAGCGA 57.495 32.000 0.00 0.00 0.00 4.93
4880 6239 7.936584 TCCTTCTTTAATTTTTCTTGAGCGAA 58.063 30.769 0.00 0.00 0.00 4.70
4881 6240 8.410141 TCCTTCTTTAATTTTTCTTGAGCGAAA 58.590 29.630 0.00 0.00 0.00 3.46
4882 6241 9.196552 CCTTCTTTAATTTTTCTTGAGCGAAAT 57.803 29.630 0.00 0.00 33.33 2.17
4885 6244 8.901748 TCTTTAATTTTTCTTGAGCGAAATTCG 58.098 29.630 11.47 11.47 43.89 3.34
4912 6271 1.661509 GCTTTTGTCTGGCAACGGC 60.662 57.895 0.00 0.00 45.18 5.68
4919 6278 0.594796 GTCTGGCAACGGCACAAAAG 60.595 55.000 0.00 0.00 45.18 2.27
4927 6286 3.564511 CAACGGCACAAAAGGTAATCAG 58.435 45.455 0.00 0.00 0.00 2.90
5053 6418 3.431725 CGCCGCAAACCCTTCCTC 61.432 66.667 0.00 0.00 0.00 3.71
5055 6420 2.434331 CCGCAAACCCTTCCTCCA 59.566 61.111 0.00 0.00 0.00 3.86
5068 6438 1.438469 TCCTCCATCCATCCATCCAC 58.562 55.000 0.00 0.00 0.00 4.02
5117 6491 1.144913 CTCTCCTCCCTCCGAATCTCT 59.855 57.143 0.00 0.00 0.00 3.10
5146 6522 0.393402 TCCATCAGCAAGCAAGCGAT 60.393 50.000 0.00 0.00 40.15 4.58
5150 6526 2.821366 AGCAAGCAAGCGATCCCG 60.821 61.111 0.00 0.00 40.15 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.273449 CACCCTCCCACCATCTGC 59.727 66.667 0.00 0.00 0.00 4.26
65 66 0.961019 TCAATCAGCAACAACCAGCC 59.039 50.000 0.00 0.00 0.00 4.85
68 69 3.286353 TCAAGTCAATCAGCAACAACCA 58.714 40.909 0.00 0.00 0.00 3.67
69 70 3.988379 TCAAGTCAATCAGCAACAACC 57.012 42.857 0.00 0.00 0.00 3.77
100 101 2.224475 TGGTTTACGATTTTGACCGGGA 60.224 45.455 6.32 0.00 33.07 5.14
198 199 6.235664 TGGGTAACACTTTATCAAGTTCTCC 58.764 40.000 0.00 0.00 40.66 3.71
201 202 8.106247 TGAATGGGTAACACTTTATCAAGTTC 57.894 34.615 0.00 0.00 40.66 3.01
219 220 1.400494 GATCGACCGGTTTTGAATGGG 59.600 52.381 9.42 0.00 0.00 4.00
231 232 4.430007 TCAATTTAGAACTGGATCGACCG 58.570 43.478 0.00 0.00 42.61 4.79
234 235 5.642063 GGTGTTCAATTTAGAACTGGATCGA 59.358 40.000 9.35 0.00 46.19 3.59
235 236 5.643777 AGGTGTTCAATTTAGAACTGGATCG 59.356 40.000 9.35 0.00 46.19 3.69
270 271 6.578163 TGGTTCTTAATTTTTAAGACCCCG 57.422 37.500 16.36 0.00 35.88 5.73
335 336 8.651389 CATGTAGTCCCCTATTGAAATCTCTAA 58.349 37.037 0.00 0.00 0.00 2.10
352 353 1.448985 TTTTGCTCCGCATGTAGTCC 58.551 50.000 0.00 0.00 38.76 3.85
361 362 2.421424 AGATTCACTCATTTTGCTCCGC 59.579 45.455 0.00 0.00 0.00 5.54
405 406 4.115516 CACTATGGACTATATGCGGATGC 58.884 47.826 0.00 0.00 43.20 3.91
457 458 7.888021 TCAACAATTTCTCAAAGCCCTCTATTA 59.112 33.333 0.00 0.00 0.00 0.98
461 462 4.279420 GTCAACAATTTCTCAAAGCCCTCT 59.721 41.667 0.00 0.00 0.00 3.69
487 488 0.746563 TGGATCGCCCGATTTTGACC 60.747 55.000 4.53 1.99 37.93 4.02
496 497 6.416750 GTCTTTAATTAAAATTGGATCGCCCG 59.583 38.462 11.62 0.00 37.93 6.13
497 498 6.700081 GGTCTTTAATTAAAATTGGATCGCCC 59.300 38.462 11.62 0.93 0.00 6.13
530 531 5.046087 AGCCTAGGTTTAAAGGTGTCGTATT 60.046 40.000 11.31 0.00 35.16 1.89
532 533 3.834231 AGCCTAGGTTTAAAGGTGTCGTA 59.166 43.478 11.31 0.00 35.16 3.43
534 535 3.329929 AGCCTAGGTTTAAAGGTGTCG 57.670 47.619 11.31 0.00 35.16 4.35
539 540 6.704310 TGTAACACTAGCCTAGGTTTAAAGG 58.296 40.000 11.31 0.00 35.86 3.11
542 543 7.016465 TCCTTTGTAACACTAGCCTAGGTTTAA 59.984 37.037 11.31 2.37 0.00 1.52
547 548 5.615925 ATCCTTTGTAACACTAGCCTAGG 57.384 43.478 3.67 3.67 0.00 3.02
553 554 8.547967 TGAAGCTTAATCCTTTGTAACACTAG 57.452 34.615 0.00 0.00 0.00 2.57
590 591 7.692460 AATATTGATTCACTCAAACTGCTCA 57.308 32.000 0.00 0.00 46.62 4.26
615 616 2.045438 TCCGGGCGCAAACATCAT 60.045 55.556 10.83 0.00 0.00 2.45
647 648 9.308318 GGCAAAGTTTAGTCAAATTACAAGAAA 57.692 29.630 0.00 0.00 0.00 2.52
650 651 8.134895 TCAGGCAAAGTTTAGTCAAATTACAAG 58.865 33.333 0.00 0.00 0.00 3.16
652 653 7.575414 TCAGGCAAAGTTTAGTCAAATTACA 57.425 32.000 0.00 0.00 0.00 2.41
687 690 8.044908 ACGCTCTTATATTTGTTTAAGGAGGAA 58.955 33.333 0.00 0.00 0.00 3.36
688 691 7.562135 ACGCTCTTATATTTGTTTAAGGAGGA 58.438 34.615 0.00 0.00 0.00 3.71
689 692 7.494625 TGACGCTCTTATATTTGTTTAAGGAGG 59.505 37.037 0.00 0.00 0.00 4.30
690 693 8.420374 TGACGCTCTTATATTTGTTTAAGGAG 57.580 34.615 0.00 0.00 0.00 3.69
691 694 8.780846 TTGACGCTCTTATATTTGTTTAAGGA 57.219 30.769 0.00 0.00 0.00 3.36
692 695 8.879759 TCTTGACGCTCTTATATTTGTTTAAGG 58.120 33.333 0.00 0.00 0.00 2.69
696 699 9.959749 TTTTTCTTGACGCTCTTATATTTGTTT 57.040 25.926 0.00 0.00 0.00 2.83
722 725 2.223971 TGGCTTCTCGTCTCGAAACTTT 60.224 45.455 0.00 0.00 34.74 2.66
730 733 1.153997 GACGGTGGCTTCTCGTCTC 60.154 63.158 7.68 0.00 46.49 3.36
744 747 2.509336 GACGTGGCTGGATGACGG 60.509 66.667 0.00 0.00 37.42 4.79
745 748 2.509336 GGACGTGGCTGGATGACG 60.509 66.667 0.00 0.00 39.03 4.35
746 749 2.125106 GGGACGTGGCTGGATGAC 60.125 66.667 0.00 0.00 0.00 3.06
853 1940 2.137528 TGGGCGCGAGGAATGGATA 61.138 57.895 12.10 0.00 0.00 2.59
923 2011 0.398318 AGCGGAAGAAAGAAGCTGGT 59.602 50.000 0.00 0.00 36.73 4.00
926 2014 2.550830 TCAAGCGGAAGAAAGAAGCT 57.449 45.000 0.00 0.00 40.20 3.74
972 2061 4.847516 CGTTCCGATCCGCGCTGA 62.848 66.667 5.56 4.40 39.11 4.26
1023 2125 1.074167 ATGGTCCTCAGGCTAGGGG 60.074 63.158 9.28 3.89 37.24 4.79
1034 2136 1.074926 ATCGAGCAGGGATGGTCCT 60.075 57.895 0.00 0.00 36.57 3.85
1035 2137 1.070445 CATCGAGCAGGGATGGTCC 59.930 63.158 0.00 0.00 38.07 4.46
1042 2144 2.825836 GTTGGCCATCGAGCAGGG 60.826 66.667 6.09 0.00 0.00 4.45
1044 2146 2.825836 GGGTTGGCCATCGAGCAG 60.826 66.667 6.09 0.00 36.17 4.24
1045 2147 4.424711 GGGGTTGGCCATCGAGCA 62.425 66.667 6.09 0.00 36.17 4.26
1046 2148 4.115199 AGGGGTTGGCCATCGAGC 62.115 66.667 6.09 0.09 36.17 5.03
1338 2446 4.528596 CCTTTCTTCCTGTAGAACCTGAGA 59.471 45.833 0.00 0.00 34.04 3.27
1368 2476 3.949754 CCAATGGCAGCAAAGAAGAGATA 59.050 43.478 0.00 0.00 0.00 1.98
1397 2505 1.963515 AGTGGTTTTTGACATGGAGCC 59.036 47.619 0.00 0.00 0.00 4.70
1416 2532 5.886715 TCAAACAAACATTCATTTCGCAG 57.113 34.783 0.00 0.00 0.00 5.18
1452 2568 4.455606 ACTGCAAAGAATATACTCCTGCC 58.544 43.478 4.08 0.00 31.77 4.85
1453 2569 6.763610 AGTTACTGCAAAGAATATACTCCTGC 59.236 38.462 0.00 0.21 32.72 4.85
1454 2570 8.723942 AAGTTACTGCAAAGAATATACTCCTG 57.276 34.615 0.00 0.00 0.00 3.86
1479 2595 9.040259 AGGCTAGAATCAGATTGCTATGTATAA 57.960 33.333 0.00 0.00 0.00 0.98
1483 2599 5.822132 AGGCTAGAATCAGATTGCTATGT 57.178 39.130 0.00 0.00 0.00 2.29
1488 2604 4.621991 TCGTTAGGCTAGAATCAGATTGC 58.378 43.478 0.00 0.00 0.00 3.56
1508 2625 1.000163 AGCGGCACATCTATAACCTCG 60.000 52.381 1.45 0.00 0.00 4.63
1512 2629 2.408050 CAGGAGCGGCACATCTATAAC 58.592 52.381 1.45 0.00 0.00 1.89
1518 2635 0.392461 TAAACCAGGAGCGGCACATC 60.392 55.000 1.45 0.00 0.00 3.06
1524 2641 1.369625 GACACATAAACCAGGAGCGG 58.630 55.000 0.00 0.00 0.00 5.52
1536 2657 3.898123 GAGAGCCCAATAGAGGACACATA 59.102 47.826 0.00 0.00 0.00 2.29
1537 2658 2.703007 GAGAGCCCAATAGAGGACACAT 59.297 50.000 0.00 0.00 0.00 3.21
1539 2660 2.393646 AGAGAGCCCAATAGAGGACAC 58.606 52.381 0.00 0.00 0.00 3.67
1540 2661 2.856760 AGAGAGCCCAATAGAGGACA 57.143 50.000 0.00 0.00 0.00 4.02
1541 2662 5.816955 AATAAGAGAGCCCAATAGAGGAC 57.183 43.478 0.00 0.00 0.00 3.85
1544 2665 8.282455 TCGTATAATAAGAGAGCCCAATAGAG 57.718 38.462 0.00 0.00 0.00 2.43
1546 2667 7.416890 CCCTCGTATAATAAGAGAGCCCAATAG 60.417 44.444 3.46 0.00 36.57 1.73
1547 2668 6.380274 CCCTCGTATAATAAGAGAGCCCAATA 59.620 42.308 3.46 0.00 36.57 1.90
1548 2669 5.187967 CCCTCGTATAATAAGAGAGCCCAAT 59.812 44.000 3.46 0.00 36.57 3.16
1551 2672 3.447944 CCCCTCGTATAATAAGAGAGCCC 59.552 52.174 3.46 0.00 36.57 5.19
1553 2674 4.342359 TCCCCCTCGTATAATAAGAGAGC 58.658 47.826 3.46 0.00 36.57 4.09
1554 2675 4.399934 GCTCCCCCTCGTATAATAAGAGAG 59.600 50.000 3.46 0.00 36.57 3.20
1555 2676 4.202641 TGCTCCCCCTCGTATAATAAGAGA 60.203 45.833 3.46 0.00 36.57 3.10
1560 2681 4.087182 CTCTTGCTCCCCCTCGTATAATA 58.913 47.826 0.00 0.00 0.00 0.98
1563 2684 1.497716 TCTCTTGCTCCCCCTCGTATA 59.502 52.381 0.00 0.00 0.00 1.47
1585 2706 5.948992 ACTGGTGCAAAGAGTAAAATCTC 57.051 39.130 4.72 0.00 34.96 2.75
1586 2707 6.547510 AGAAACTGGTGCAAAGAGTAAAATCT 59.452 34.615 4.72 0.64 0.00 2.40
1587 2708 6.739112 AGAAACTGGTGCAAAGAGTAAAATC 58.261 36.000 4.72 0.00 0.00 2.17
1588 2709 6.715347 AGAAACTGGTGCAAAGAGTAAAAT 57.285 33.333 4.72 0.00 0.00 1.82
1592 2837 6.147164 CGATTTAGAAACTGGTGCAAAGAGTA 59.853 38.462 4.72 0.00 0.00 2.59
1647 2892 2.274437 GAATCTTCGACCCCGTTAACC 58.726 52.381 0.00 0.00 37.05 2.85
1665 2910 1.632046 GCGAGCGGAAAATCACGGAA 61.632 55.000 0.00 0.00 0.00 4.30
1692 2937 1.065418 CCAATTAGAGGAACGGCCAGT 60.065 52.381 2.24 0.00 40.02 4.00
1723 2968 5.416326 AGTTAAGGCCGTGCATAAAAACATA 59.584 36.000 0.00 0.00 0.00 2.29
1799 3044 1.745489 GGTTAGCAGAAGCCCGTGG 60.745 63.158 0.00 0.00 43.56 4.94
1800 3045 0.535335 TAGGTTAGCAGAAGCCCGTG 59.465 55.000 0.00 0.00 43.56 4.94
1803 3055 3.118223 ACTTCATAGGTTAGCAGAAGCCC 60.118 47.826 9.81 0.00 43.56 5.19
1821 3073 4.324402 CGCACCATAAATCTGCAAAACTTC 59.676 41.667 0.00 0.00 0.00 3.01
1827 3079 2.016318 CTCCGCACCATAAATCTGCAA 58.984 47.619 0.00 0.00 0.00 4.08
1844 3096 1.831580 ATGCCTGCTGAAGTTTCTCC 58.168 50.000 0.00 0.00 0.00 3.71
1862 3114 6.374417 TTGTCTTTAGGCCTCTCTTGTAAT 57.626 37.500 9.68 0.00 0.00 1.89
1907 3159 1.612950 TGCAACTACTTGGCCACATTG 59.387 47.619 3.88 7.10 0.00 2.82
1908 3160 1.993956 TGCAACTACTTGGCCACATT 58.006 45.000 3.88 0.00 0.00 2.71
1915 3167 6.970484 AGAGTAATGTTTTGCAACTACTTGG 58.030 36.000 0.00 0.00 32.96 3.61
1919 3171 8.020819 TGCAATAGAGTAATGTTTTGCAACTAC 58.979 33.333 13.99 0.73 44.39 2.73
1931 3183 6.731164 TGTCATGCAATGCAATAGAGTAATG 58.269 36.000 13.45 2.36 46.21 1.90
1932 3184 6.947644 TGTCATGCAATGCAATAGAGTAAT 57.052 33.333 13.45 0.00 46.21 1.89
1957 3209 4.017808 ACTACTTGCTACCTTCAGACGAT 58.982 43.478 0.00 0.00 0.00 3.73
1959 3211 3.190744 TGACTACTTGCTACCTTCAGACG 59.809 47.826 0.00 0.00 0.00 4.18
2002 3255 1.470098 CACTTCAGTATGGGTTGCAGC 59.530 52.381 0.00 0.00 36.16 5.25
2003 3256 3.057969 TCACTTCAGTATGGGTTGCAG 57.942 47.619 0.00 0.00 36.16 4.41
2004 3257 3.346315 CATCACTTCAGTATGGGTTGCA 58.654 45.455 0.00 0.00 36.16 4.08
2005 3258 2.684881 CCATCACTTCAGTATGGGTTGC 59.315 50.000 0.00 0.00 37.17 4.17
2006 3259 4.080919 TCTCCATCACTTCAGTATGGGTTG 60.081 45.833 12.05 6.63 40.53 3.77
2007 3260 4.104086 TCTCCATCACTTCAGTATGGGTT 58.896 43.478 12.05 0.00 40.53 4.11
2008 3261 3.708631 CTCTCCATCACTTCAGTATGGGT 59.291 47.826 12.05 0.00 40.53 4.51
2009 3262 3.494048 GCTCTCCATCACTTCAGTATGGG 60.494 52.174 12.05 1.60 40.53 4.00
2010 3263 3.494048 GGCTCTCCATCACTTCAGTATGG 60.494 52.174 0.00 0.00 41.33 2.74
2011 3264 3.387374 AGGCTCTCCATCACTTCAGTATG 59.613 47.826 0.00 0.00 33.11 2.39
2012 3265 3.652055 AGGCTCTCCATCACTTCAGTAT 58.348 45.455 0.00 0.00 33.74 2.12
2013 3266 3.107402 AGGCTCTCCATCACTTCAGTA 57.893 47.619 0.00 0.00 33.74 2.74
2014 3267 1.949799 AGGCTCTCCATCACTTCAGT 58.050 50.000 0.00 0.00 33.74 3.41
2015 3268 4.187694 GTTTAGGCTCTCCATCACTTCAG 58.812 47.826 0.00 0.00 33.74 3.02
2016 3269 3.582647 TGTTTAGGCTCTCCATCACTTCA 59.417 43.478 0.00 0.00 33.74 3.02
2017 3270 3.935828 GTGTTTAGGCTCTCCATCACTTC 59.064 47.826 0.00 0.00 33.74 3.01
2018 3271 3.327757 TGTGTTTAGGCTCTCCATCACTT 59.672 43.478 0.00 0.00 33.74 3.16
2019 3272 2.906389 TGTGTTTAGGCTCTCCATCACT 59.094 45.455 0.00 0.00 33.74 3.41
2020 3273 3.334583 TGTGTTTAGGCTCTCCATCAC 57.665 47.619 0.00 0.00 33.74 3.06
2021 3274 4.072131 GTTTGTGTTTAGGCTCTCCATCA 58.928 43.478 0.00 0.00 33.74 3.07
2022 3275 3.440522 GGTTTGTGTTTAGGCTCTCCATC 59.559 47.826 0.00 0.00 33.74 3.51
2023 3276 3.074538 AGGTTTGTGTTTAGGCTCTCCAT 59.925 43.478 0.00 0.00 33.74 3.41
2024 3277 2.441750 AGGTTTGTGTTTAGGCTCTCCA 59.558 45.455 0.00 0.00 33.74 3.86
2025 3278 3.075148 GAGGTTTGTGTTTAGGCTCTCC 58.925 50.000 0.00 0.00 0.00 3.71
2026 3279 4.009370 AGAGGTTTGTGTTTAGGCTCTC 57.991 45.455 0.00 0.00 0.00 3.20
2027 3280 4.103311 AGAAGAGGTTTGTGTTTAGGCTCT 59.897 41.667 0.00 0.00 0.00 4.09
2028 3281 4.390264 AGAAGAGGTTTGTGTTTAGGCTC 58.610 43.478 0.00 0.00 0.00 4.70
2029 3282 4.439253 AGAAGAGGTTTGTGTTTAGGCT 57.561 40.909 0.00 0.00 0.00 4.58
2030 3283 5.333875 CGTAAGAAGAGGTTTGTGTTTAGGC 60.334 44.000 0.00 0.00 43.02 3.93
2031 3284 5.178809 CCGTAAGAAGAGGTTTGTGTTTAGG 59.821 44.000 0.00 0.00 43.02 2.69
2032 3285 5.756833 ACCGTAAGAAGAGGTTTGTGTTTAG 59.243 40.000 0.00 0.00 43.02 1.85
2033 3286 5.673514 ACCGTAAGAAGAGGTTTGTGTTTA 58.326 37.500 0.00 0.00 43.02 2.01
2034 3287 4.520179 ACCGTAAGAAGAGGTTTGTGTTT 58.480 39.130 0.00 0.00 43.02 2.83
2035 3288 4.146745 ACCGTAAGAAGAGGTTTGTGTT 57.853 40.909 0.00 0.00 43.02 3.32
2036 3289 3.832615 ACCGTAAGAAGAGGTTTGTGT 57.167 42.857 0.00 0.00 43.02 3.72
2037 3290 4.092968 GCATACCGTAAGAAGAGGTTTGTG 59.907 45.833 6.27 0.00 38.60 3.33
2038 3291 4.251268 GCATACCGTAAGAAGAGGTTTGT 58.749 43.478 6.27 0.00 38.60 2.83
2039 3292 3.306166 CGCATACCGTAAGAAGAGGTTTG 59.694 47.826 0.00 0.00 39.10 2.93
2040 3293 3.518590 CGCATACCGTAAGAAGAGGTTT 58.481 45.455 0.00 0.00 39.31 3.27
2041 3294 2.737679 GCGCATACCGTAAGAAGAGGTT 60.738 50.000 0.30 0.00 39.31 3.50
2042 3295 1.202382 GCGCATACCGTAAGAAGAGGT 60.202 52.381 0.30 0.00 41.73 3.85
2043 3296 1.488527 GCGCATACCGTAAGAAGAGG 58.511 55.000 0.30 0.00 43.02 3.69
2044 3297 1.067212 AGGCGCATACCGTAAGAAGAG 59.933 52.381 10.83 0.00 43.02 2.85
2045 3298 1.108776 AGGCGCATACCGTAAGAAGA 58.891 50.000 10.83 0.00 43.02 2.87
2046 3299 2.787601 TAGGCGCATACCGTAAGAAG 57.212 50.000 10.83 0.00 43.02 2.85
2047 3300 2.363038 ACATAGGCGCATACCGTAAGAA 59.637 45.455 10.83 0.00 43.02 2.52
2048 3301 1.958579 ACATAGGCGCATACCGTAAGA 59.041 47.619 10.83 0.00 43.02 2.10
2049 3302 2.058798 CACATAGGCGCATACCGTAAG 58.941 52.381 10.83 0.00 39.71 2.34
2050 3303 1.269883 CCACATAGGCGCATACCGTAA 60.270 52.381 10.83 0.00 39.71 3.18
2051 3304 0.315886 CCACATAGGCGCATACCGTA 59.684 55.000 10.83 0.00 39.71 4.02
2052 3305 1.069090 CCACATAGGCGCATACCGT 59.931 57.895 10.83 4.76 39.71 4.83
2053 3306 3.951332 CCACATAGGCGCATACCG 58.049 61.111 10.83 4.01 40.75 4.02
2062 3315 0.179100 CAGTGACTCGGCCACATAGG 60.179 60.000 2.24 0.00 37.01 2.57
2063 3316 0.807667 GCAGTGACTCGGCCACATAG 60.808 60.000 2.24 0.00 37.01 2.23
2064 3317 1.218047 GCAGTGACTCGGCCACATA 59.782 57.895 2.24 0.00 37.01 2.29
2065 3318 2.046892 GCAGTGACTCGGCCACAT 60.047 61.111 2.24 0.00 37.01 3.21
2066 3319 3.100503 TTGCAGTGACTCGGCCACA 62.101 57.895 2.24 0.00 37.01 4.17
2067 3320 2.280797 TTGCAGTGACTCGGCCAC 60.281 61.111 2.24 0.00 36.45 5.01
2068 3321 2.280797 GTTGCAGTGACTCGGCCA 60.281 61.111 2.24 0.00 36.45 5.36
2069 3322 1.598130 AAGTTGCAGTGACTCGGCC 60.598 57.895 0.00 0.00 36.45 6.13
2070 3323 1.160329 ACAAGTTGCAGTGACTCGGC 61.160 55.000 1.81 0.00 37.73 5.54
2071 3324 1.792949 GTACAAGTTGCAGTGACTCGG 59.207 52.381 1.81 0.00 0.00 4.63
2072 3325 2.472861 CAGTACAAGTTGCAGTGACTCG 59.527 50.000 5.11 0.00 0.00 4.18
2073 3326 3.717707 TCAGTACAAGTTGCAGTGACTC 58.282 45.455 9.20 0.00 0.00 3.36
2074 3327 3.819564 TCAGTACAAGTTGCAGTGACT 57.180 42.857 9.20 0.43 0.00 3.41
2075 3328 3.871594 ACTTCAGTACAAGTTGCAGTGAC 59.128 43.478 12.33 0.00 32.34 3.67
2076 3329 3.871006 CACTTCAGTACAAGTTGCAGTGA 59.129 43.478 9.20 9.20 39.77 3.41
2077 3330 3.002656 CCACTTCAGTACAAGTTGCAGTG 59.997 47.826 1.81 3.49 37.99 3.66
2109 3362 8.141909 CCATCGTCTTCTAAAAGGACATATACA 58.858 37.037 0.00 0.00 33.03 2.29
2135 3391 8.139989 ACAATTCATAAGAGAAAATATGCAGGC 58.860 33.333 0.00 0.00 31.11 4.85
2195 3451 3.836949 AGAAATGCGCCATGTAAAACTG 58.163 40.909 4.18 0.00 0.00 3.16
2232 3488 8.267183 TGATTAGAAGAATGCATAGTGGAGAAA 58.733 33.333 0.00 0.00 0.00 2.52
2233 3489 7.712639 GTGATTAGAAGAATGCATAGTGGAGAA 59.287 37.037 0.00 0.00 0.00 2.87
2260 3518 1.879380 TGAAAACGACAGAAGCATGGG 59.121 47.619 0.00 0.00 0.00 4.00
2262 3520 6.779117 AGATTATGAAAACGACAGAAGCATG 58.221 36.000 0.00 0.00 29.26 4.06
2271 3529 6.312918 TGCTGACCTAAGATTATGAAAACGAC 59.687 38.462 0.00 0.00 0.00 4.34
2274 3532 8.677300 TGATTGCTGACCTAAGATTATGAAAAC 58.323 33.333 0.00 0.00 0.00 2.43
2279 3537 5.755375 ACGTGATTGCTGACCTAAGATTATG 59.245 40.000 0.00 0.00 0.00 1.90
2286 3544 1.943968 GCCACGTGATTGCTGACCTAA 60.944 52.381 19.30 0.00 0.00 2.69
2334 3592 0.393537 CAGATGGTGGCAGAAGGGAC 60.394 60.000 0.00 0.00 0.00 4.46
2359 3617 2.867624 TCTCAGCTTTTGTGCTTCCAT 58.132 42.857 0.00 0.00 41.98 3.41
2430 3688 6.719365 CAACACTTTAACAGACCTGAAGAAG 58.281 40.000 3.76 6.72 0.00 2.85
2631 3889 7.489113 GGTTTAAATGGCATCATTAGTCACAAG 59.511 37.037 0.00 0.00 42.29 3.16
2644 3904 7.093377 ACAATGTGATACTGGTTTAAATGGCAT 60.093 33.333 0.00 0.00 0.00 4.40
2678 3938 3.741476 GGCAAAGCCCAGCGAGTG 61.741 66.667 0.00 0.00 44.06 3.51
2770 4041 3.743396 GCACTGCATATTACAGGTAGCTC 59.257 47.826 0.00 0.00 39.55 4.09
2786 4061 0.391130 TACCAACGATGAGGCACTGC 60.391 55.000 0.00 0.00 41.55 4.40
2787 4062 1.204704 TCTACCAACGATGAGGCACTG 59.795 52.381 0.00 0.00 41.55 3.66
2825 4100 6.514870 GCACTGATCCAAACATACAAACTTCA 60.515 38.462 0.00 0.00 0.00 3.02
2826 4101 5.858581 GCACTGATCCAAACATACAAACTTC 59.141 40.000 0.00 0.00 0.00 3.01
2873 4156 1.272212 TGTGCAGTCTACAATGCTCGA 59.728 47.619 0.00 0.00 42.98 4.04
2880 4163 4.937620 GGAAAGATGATGTGCAGTCTACAA 59.062 41.667 0.00 0.00 0.00 2.41
2894 4177 6.837312 TCAAAGGTAGAACAAGGAAAGATGA 58.163 36.000 0.00 0.00 0.00 2.92
2905 4188 9.219603 CTCACTATTCATTTCAAAGGTAGAACA 57.780 33.333 0.00 0.00 0.00 3.18
2915 4198 6.182627 ACTGCATCCTCACTATTCATTTCAA 58.817 36.000 0.00 0.00 0.00 2.69
2922 4205 6.393990 CAGGTATACTGCATCCTCACTATTC 58.606 44.000 2.25 0.00 40.97 1.75
2942 4225 4.098914 ACACATTCAACCATGTACAGGT 57.901 40.909 6.79 8.77 42.34 4.00
2958 4241 6.115446 TCTGTGAAGAGAAAACTCAACACAT 58.885 36.000 19.69 0.00 39.13 3.21
2960 4243 6.128282 TGTTCTGTGAAGAGAAAACTCAACAC 60.128 38.462 0.44 0.44 33.73 3.32
2962 4245 6.251549 GTGTTCTGTGAAGAGAAAACTCAAC 58.748 40.000 3.80 0.00 37.26 3.18
2995 4278 2.493278 CCATTCCCTGAACAGCGAAAAT 59.507 45.455 6.10 0.00 30.10 1.82
2998 4281 0.690192 TCCATTCCCTGAACAGCGAA 59.310 50.000 4.72 4.72 30.76 4.70
3000 4283 2.620251 TATCCATTCCCTGAACAGCG 57.380 50.000 0.00 0.00 0.00 5.18
3002 4285 3.152341 GCCATATCCATTCCCTGAACAG 58.848 50.000 0.00 0.00 0.00 3.16
3007 4290 0.037303 AGCGCCATATCCATTCCCTG 59.963 55.000 2.29 0.00 0.00 4.45
3045 4328 6.778542 TCAGGAAATATATGAACCCATCCA 57.221 37.500 0.00 0.00 34.31 3.41
3083 4366 2.889756 GCAATGGTTTTCCCTCCATCCT 60.890 50.000 0.00 0.00 42.73 3.24
3087 4370 1.549950 GGAGCAATGGTTTTCCCTCCA 60.550 52.381 0.00 0.00 41.37 3.86
3136 4419 8.554528 CAGATAGCACAGTACAAGGAAATAATG 58.445 37.037 0.00 0.00 0.00 1.90
3137 4420 7.227512 GCAGATAGCACAGTACAAGGAAATAAT 59.772 37.037 0.00 0.00 44.79 1.28
3155 4438 7.659390 AGGAGTTCACTAATAATTGCAGATAGC 59.341 37.037 0.00 0.00 45.96 2.97
3156 4439 9.202273 GAGGAGTTCACTAATAATTGCAGATAG 57.798 37.037 0.00 0.00 0.00 2.08
3157 4440 8.928448 AGAGGAGTTCACTAATAATTGCAGATA 58.072 33.333 0.00 0.00 0.00 1.98
3158 4441 7.800092 AGAGGAGTTCACTAATAATTGCAGAT 58.200 34.615 0.00 0.00 0.00 2.90
3159 4442 7.187824 AGAGGAGTTCACTAATAATTGCAGA 57.812 36.000 0.00 0.00 0.00 4.26
3167 4450 8.880991 AGTAAGTCAAGAGGAGTTCACTAATA 57.119 34.615 0.00 0.00 39.80 0.98
3169 4452 7.598759 AAGTAAGTCAAGAGGAGTTCACTAA 57.401 36.000 0.00 0.00 39.80 2.24
3226 4509 5.009610 ACAAAGACCGCAAAAACTGATACAT 59.990 36.000 0.00 0.00 0.00 2.29
3227 4510 4.336993 ACAAAGACCGCAAAAACTGATACA 59.663 37.500 0.00 0.00 0.00 2.29
3228 4511 4.855531 ACAAAGACCGCAAAAACTGATAC 58.144 39.130 0.00 0.00 0.00 2.24
3237 4520 4.705337 AAACTACAACAAAGACCGCAAA 57.295 36.364 0.00 0.00 0.00 3.68
3238 4521 4.705337 AAAACTACAACAAAGACCGCAA 57.295 36.364 0.00 0.00 0.00 4.85
3240 4523 4.417506 ACAAAAACTACAACAAAGACCGC 58.582 39.130 0.00 0.00 0.00 5.68
3241 4524 5.032220 GGACAAAAACTACAACAAAGACCG 58.968 41.667 0.00 0.00 0.00 4.79
3243 4526 7.544217 ACAATGGACAAAAACTACAACAAAGAC 59.456 33.333 0.00 0.00 0.00 3.01
3244 4527 7.607250 ACAATGGACAAAAACTACAACAAAGA 58.393 30.769 0.00 0.00 0.00 2.52
3247 4530 9.360093 CTTAACAATGGACAAAAACTACAACAA 57.640 29.630 0.00 0.00 0.00 2.83
3248 4531 7.976734 CCTTAACAATGGACAAAAACTACAACA 59.023 33.333 0.00 0.00 0.00 3.33
3249 4532 7.436970 CCCTTAACAATGGACAAAAACTACAAC 59.563 37.037 0.00 0.00 0.00 3.32
3271 4565 1.262417 CAATTAAACGGGTGGCCCTT 58.738 50.000 0.00 0.00 42.67 3.95
3275 4569 1.173913 AGAGCAATTAAACGGGTGGC 58.826 50.000 0.00 0.00 0.00 5.01
3276 4570 3.934457 AAAGAGCAATTAAACGGGTGG 57.066 42.857 0.00 0.00 0.00 4.61
3281 4575 7.363431 AGGAGAAGAAAAAGAGCAATTAAACG 58.637 34.615 0.00 0.00 0.00 3.60
3290 4584 5.552178 TCTGGTAAGGAGAAGAAAAAGAGC 58.448 41.667 0.00 0.00 0.00 4.09
3291 4585 7.120432 CCAATCTGGTAAGGAGAAGAAAAAGAG 59.880 40.741 0.00 0.00 31.35 2.85
3317 4612 2.338577 AGGCTGTCAGCATCCATTAC 57.661 50.000 25.68 6.27 44.75 1.89
3493 4792 5.817816 CCACTATCACCTACAGAACCAAATC 59.182 44.000 0.00 0.00 0.00 2.17
3494 4793 5.250774 ACCACTATCACCTACAGAACCAAAT 59.749 40.000 0.00 0.00 0.00 2.32
3495 4794 4.595781 ACCACTATCACCTACAGAACCAAA 59.404 41.667 0.00 0.00 0.00 3.28
3496 4795 4.164981 ACCACTATCACCTACAGAACCAA 58.835 43.478 0.00 0.00 0.00 3.67
3499 4798 5.148651 ACAACCACTATCACCTACAGAAC 57.851 43.478 0.00 0.00 0.00 3.01
3525 4824 2.096417 GTCGTCAAAGTTGATTGGGTCG 60.096 50.000 0.00 0.00 39.73 4.79
3564 4863 6.338146 TCTAGAAATATGTTGGGAGTCGTTG 58.662 40.000 0.00 0.00 0.00 4.10
3642 4941 1.187087 ATCTGTCGACCTCCACCTTC 58.813 55.000 14.12 0.00 0.00 3.46
3694 4993 1.227234 CTGTGTCGGCTGTGTGACA 60.227 57.895 0.00 0.00 42.49 3.58
3706 5005 0.311790 TACCCGTCGTTGACTGTGTC 59.688 55.000 0.00 0.00 0.00 3.67
3790 5092 0.391661 TCTTGGGCTGACGAATGCTC 60.392 55.000 0.00 0.00 0.00 4.26
3791 5093 0.392193 CTCTTGGGCTGACGAATGCT 60.392 55.000 0.00 0.00 0.00 3.79
3792 5094 1.986575 GCTCTTGGGCTGACGAATGC 61.987 60.000 0.00 0.00 0.00 3.56
3801 5103 3.192630 TTTGGGGGCTCTTGGGCT 61.193 61.111 0.00 0.00 40.65 5.19
3813 5115 1.651240 CGTGCTGGATCTGCTTTGGG 61.651 60.000 11.30 0.00 0.00 4.12
3936 5241 3.872603 TGCCGGCTGAACCAGTGT 61.873 61.111 29.70 0.00 39.03 3.55
3966 5271 2.514824 GCGAACCCCATGAGCTCC 60.515 66.667 12.15 0.00 0.00 4.70
3996 5301 2.741092 GACCTGCCGTTCCTGACA 59.259 61.111 0.00 0.00 0.00 3.58
4000 5305 2.671070 CATGGACCTGCCGTTCCT 59.329 61.111 0.00 0.00 40.66 3.36
4110 5415 0.621571 AGGGTGCCCTATCTCAAGCA 60.622 55.000 8.24 0.00 46.14 3.91
4117 5422 2.104963 CCTCTGTTTAGGGTGCCCTATC 59.895 54.545 16.99 13.35 46.84 2.08
4118 5423 2.127708 CCTCTGTTTAGGGTGCCCTAT 58.872 52.381 16.99 0.00 46.84 2.57
4123 5428 0.038310 AAGGCCTCTGTTTAGGGTGC 59.962 55.000 5.23 0.00 37.11 5.01
4125 5430 0.992695 GGAAGGCCTCTGTTTAGGGT 59.007 55.000 5.23 0.00 37.11 4.34
4133 5438 2.224769 TGTACAAAAGGGAAGGCCTCTG 60.225 50.000 5.23 0.00 0.00 3.35
4134 5439 2.040412 CTGTACAAAAGGGAAGGCCTCT 59.960 50.000 5.23 0.00 0.00 3.69
4136 5441 2.062636 TCTGTACAAAAGGGAAGGCCT 58.937 47.619 0.00 0.00 0.00 5.19
4137 5442 2.579410 TCTGTACAAAAGGGAAGGCC 57.421 50.000 0.00 0.00 0.00 5.19
4162 5471 2.632136 TTCGTGTCGGCGTCCTTGTT 62.632 55.000 6.85 0.00 0.00 2.83
4183 5492 7.928103 AGCAAAAACAGATGCATTCTATCTAG 58.072 34.615 0.00 0.00 44.95 2.43
4196 5505 3.460103 CACCAGCAAAGCAAAAACAGAT 58.540 40.909 0.00 0.00 0.00 2.90
4207 5517 1.741327 AACTGCCAGCACCAGCAAAG 61.741 55.000 0.00 0.00 45.49 2.77
4215 5525 1.006922 GCTCCAAAACTGCCAGCAC 60.007 57.895 0.00 0.00 0.00 4.40
4237 5548 3.737266 GTCCAGTTCATTGTTCGTTCGTA 59.263 43.478 0.00 0.00 0.00 3.43
4239 5550 2.542178 TGTCCAGTTCATTGTTCGTTCG 59.458 45.455 0.00 0.00 0.00 3.95
4324 5643 6.028146 TCTTACACTTAACAAGCCGACATA 57.972 37.500 0.00 0.00 0.00 2.29
4404 5740 4.430137 TCAAAAAGAGTGCATGCTCATC 57.570 40.909 20.33 13.58 37.94 2.92
4409 5745 5.910637 TCATTTTCAAAAAGAGTGCATGC 57.089 34.783 11.82 11.82 0.00 4.06
4411 5747 7.495055 AGACTTCATTTTCAAAAAGAGTGCAT 58.505 30.769 0.00 0.00 0.00 3.96
4438 5775 0.323178 CTGCCTCACTGCCTCCAAAT 60.323 55.000 0.00 0.00 0.00 2.32
4509 5846 5.523916 AGAAAATTGATCACGAGATAACCGG 59.476 40.000 0.00 0.00 33.72 5.28
4558 5895 1.446907 ACAGATGCAACTGCTACTGC 58.553 50.000 22.56 0.00 43.02 4.40
4601 5938 4.479158 AGCCACACCCTTATTGAAAAGAA 58.521 39.130 0.00 0.00 0.00 2.52
4602 5939 4.112634 AGCCACACCCTTATTGAAAAGA 57.887 40.909 0.00 0.00 0.00 2.52
4604 5941 4.202631 ACCTAGCCACACCCTTATTGAAAA 60.203 41.667 0.00 0.00 0.00 2.29
4605 5942 3.332485 ACCTAGCCACACCCTTATTGAAA 59.668 43.478 0.00 0.00 0.00 2.69
4606 5943 2.916934 ACCTAGCCACACCCTTATTGAA 59.083 45.455 0.00 0.00 0.00 2.69
4608 5945 3.366052 AACCTAGCCACACCCTTATTG 57.634 47.619 0.00 0.00 0.00 1.90
4609 5946 4.397919 AAAACCTAGCCACACCCTTATT 57.602 40.909 0.00 0.00 0.00 1.40
4610 5947 4.086457 CAAAAACCTAGCCACACCCTTAT 58.914 43.478 0.00 0.00 0.00 1.73
4611 5948 3.138653 TCAAAAACCTAGCCACACCCTTA 59.861 43.478 0.00 0.00 0.00 2.69
4613 5950 1.497286 TCAAAAACCTAGCCACACCCT 59.503 47.619 0.00 0.00 0.00 4.34
4614 5951 1.886542 CTCAAAAACCTAGCCACACCC 59.113 52.381 0.00 0.00 0.00 4.61
4616 5953 3.477530 AGTCTCAAAAACCTAGCCACAC 58.522 45.455 0.00 0.00 0.00 3.82
4617 5954 3.857157 AGTCTCAAAAACCTAGCCACA 57.143 42.857 0.00 0.00 0.00 4.17
4618 5955 3.186613 CGAAGTCTCAAAAACCTAGCCAC 59.813 47.826 0.00 0.00 0.00 5.01
4620 5957 2.159824 GCGAAGTCTCAAAAACCTAGCC 59.840 50.000 0.00 0.00 0.00 3.93
4624 5961 2.135933 CTCGCGAAGTCTCAAAAACCT 58.864 47.619 11.33 0.00 0.00 3.50
4625 5962 1.398578 GCTCGCGAAGTCTCAAAAACC 60.399 52.381 11.33 0.00 0.00 3.27
4626 5963 1.398578 GGCTCGCGAAGTCTCAAAAAC 60.399 52.381 11.33 0.00 0.00 2.43
4629 5966 0.249699 TTGGCTCGCGAAGTCTCAAA 60.250 50.000 11.33 0.00 0.00 2.69
4631 5968 1.080501 CTTGGCTCGCGAAGTCTCA 60.081 57.895 11.33 1.21 0.00 3.27
4632 5969 1.080434 ACTTGGCTCGCGAAGTCTC 60.080 57.895 11.33 0.00 40.12 3.36
4633 5970 1.373497 CACTTGGCTCGCGAAGTCT 60.373 57.895 11.33 0.00 41.77 3.24
4634 5971 0.737715 ATCACTTGGCTCGCGAAGTC 60.738 55.000 11.33 6.75 41.77 3.01
4635 5972 0.320771 AATCACTTGGCTCGCGAAGT 60.321 50.000 11.33 12.58 43.87 3.01
4637 5974 0.320334 TCAATCACTTGGCTCGCGAA 60.320 50.000 11.33 0.00 32.95 4.70
4638 5975 0.737367 CTCAATCACTTGGCTCGCGA 60.737 55.000 9.26 9.26 32.95 5.87
4639 5976 1.712081 CTCAATCACTTGGCTCGCG 59.288 57.895 0.00 0.00 32.95 5.87
4640 5977 1.300971 TGCTCAATCACTTGGCTCGC 61.301 55.000 0.00 0.00 32.81 5.03
4641 5978 1.376543 ATGCTCAATCACTTGGCTCG 58.623 50.000 0.00 0.00 32.81 5.03
4642 5979 4.132336 TCATATGCTCAATCACTTGGCTC 58.868 43.478 0.00 0.00 32.81 4.70
4645 5992 7.092137 TCTTTTCATATGCTCAATCACTTGG 57.908 36.000 0.00 0.00 32.95 3.61
4750 6097 5.879223 AGGATTGCTAAATCTCAGTCAACTG 59.121 40.000 3.69 3.69 41.74 3.16
4751 6098 5.879223 CAGGATTGCTAAATCTCAGTCAACT 59.121 40.000 0.00 0.00 41.74 3.16
4752 6099 5.645497 ACAGGATTGCTAAATCTCAGTCAAC 59.355 40.000 0.00 0.00 41.74 3.18
4753 6100 5.809001 ACAGGATTGCTAAATCTCAGTCAA 58.191 37.500 0.00 0.00 41.74 3.18
4754 6101 5.426689 ACAGGATTGCTAAATCTCAGTCA 57.573 39.130 0.00 0.00 41.74 3.41
4806 6153 9.831682 ACCTAATTTACTGAATTCCCCTAAAAA 57.168 29.630 2.27 0.00 38.80 1.94
4837 6184 8.887264 AAGAAGGAAGTAACTCTTGAGATCTA 57.113 34.615 4.49 0.00 36.40 1.98
4852 6211 7.862873 CGCTCAAGAAAAATTAAAGAAGGAAGT 59.137 33.333 0.00 0.00 0.00 3.01
4859 6218 8.901748 CGAATTTCGCTCAAGAAAAATTAAAGA 58.098 29.630 5.78 0.00 42.52 2.52
4886 6245 0.239347 CCAGACAAAAGCTTCGCCAG 59.761 55.000 0.00 0.00 0.00 4.85
4887 6246 1.795170 GCCAGACAAAAGCTTCGCCA 61.795 55.000 0.00 0.00 0.00 5.69
4888 6247 1.081175 GCCAGACAAAAGCTTCGCC 60.081 57.895 0.00 0.00 0.00 5.54
4889 6248 0.030638 TTGCCAGACAAAAGCTTCGC 59.969 50.000 0.00 0.00 34.56 4.70
4890 6249 1.758783 GTTGCCAGACAAAAGCTTCG 58.241 50.000 0.00 0.00 40.82 3.79
4891 6250 1.600413 CCGTTGCCAGACAAAAGCTTC 60.600 52.381 0.00 0.00 40.82 3.86
4892 6251 0.385390 CCGTTGCCAGACAAAAGCTT 59.615 50.000 0.00 0.00 40.82 3.74
4893 6252 2.032981 CCGTTGCCAGACAAAAGCT 58.967 52.632 0.00 0.00 40.82 3.74
4894 6253 1.661509 GCCGTTGCCAGACAAAAGC 60.662 57.895 0.00 0.00 40.82 3.51
4895 6254 0.594796 GTGCCGTTGCCAGACAAAAG 60.595 55.000 0.00 0.00 40.82 2.27
4912 6271 2.420022 CGGGCTCTGATTACCTTTTGTG 59.580 50.000 0.00 0.00 0.00 3.33
4919 6278 0.946221 CGATGCGGGCTCTGATTACC 60.946 60.000 0.00 0.00 0.00 2.85
5010 6370 4.941873 GTCGGAGTTTAAAATGTGGAGGAT 59.058 41.667 0.00 0.00 0.00 3.24
5053 6418 1.168407 GCGTGTGGATGGATGGATGG 61.168 60.000 0.00 0.00 0.00 3.51
5055 6420 1.149174 GGCGTGTGGATGGATGGAT 59.851 57.895 0.00 0.00 0.00 3.41
5090 6461 1.135960 GGAGGGAGGAGAGATTTGGG 58.864 60.000 0.00 0.00 0.00 4.12
5117 6491 1.144716 GCTGATGGATGGAGACGCA 59.855 57.895 0.00 0.00 0.00 5.24
5150 6526 4.129148 GAGGGCCATGGGTGGGAC 62.129 72.222 15.13 0.00 46.14 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.