Multiple sequence alignment - TraesCS3D01G441600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G441600 chr3D 100.000 5227 0 0 1 5227 551985260 551980034 0.000000e+00 9653.0
1 TraesCS3D01G441600 chr3B 89.258 1564 117 28 1730 3290 732429922 732428407 0.000000e+00 1910.0
2 TraesCS3D01G441600 chr3B 88.792 1142 72 23 3319 4430 732428410 732427295 0.000000e+00 1349.0
3 TraesCS3D01G441600 chr3B 93.455 382 20 3 4835 5214 732462747 732462369 3.530000e-156 562.0
4 TraesCS3D01G441600 chr3B 88.309 479 31 16 1 471 732431746 732431285 7.650000e-153 551.0
5 TraesCS3D01G441600 chr3B 83.964 555 37 16 421 929 732431279 732430731 7.870000e-133 484.0
6 TraesCS3D01G441600 chr3B 89.140 221 21 3 5010 5227 15305593 15305813 6.670000e-69 272.0
7 TraesCS3D01G441600 chr3B 89.140 221 21 3 5010 5227 15409320 15409540 6.670000e-69 272.0
8 TraesCS3D01G441600 chr3B 89.140 221 21 3 5010 5227 15423163 15423383 6.670000e-69 272.0
9 TraesCS3D01G441600 chr3B 91.176 204 11 4 1232 1432 732430433 732430234 2.400000e-68 270.0
10 TraesCS3D01G441600 chr3B 88.688 221 22 3 5010 5227 15269100 15269320 3.100000e-67 267.0
11 TraesCS3D01G441600 chr3B 94.118 170 10 0 4426 4595 732427212 732427043 5.190000e-65 259.0
12 TraesCS3D01G441600 chr3B 86.538 208 10 4 997 1195 732430700 732430502 4.100000e-51 213.0
13 TraesCS3D01G441600 chr3B 95.745 47 2 0 4594 4640 732425521 732425475 5.610000e-10 76.8
14 TraesCS3D01G441600 chr3A 82.821 1496 121 66 3 1432 688677740 688676315 0.000000e+00 1214.0
15 TraesCS3D01G441600 chr3A 87.000 700 52 23 2589 3276 688674984 688674312 0.000000e+00 752.0
16 TraesCS3D01G441600 chr3A 90.669 568 39 9 3750 4312 688673860 688673302 0.000000e+00 743.0
17 TraesCS3D01G441600 chr3A 86.767 597 56 14 1736 2324 688675913 688675332 1.230000e-180 643.0
18 TraesCS3D01G441600 chr3A 91.155 407 19 8 4611 5015 688673053 688672662 2.140000e-148 536.0
19 TraesCS3D01G441600 chr3A 87.646 429 20 15 3336 3753 688674292 688673886 7.930000e-128 468.0
20 TraesCS3D01G441600 chr3A 93.878 98 6 0 1524 1621 688676134 688676037 1.170000e-31 148.0
21 TraesCS3D01G441600 chr4D 89.593 221 20 3 5010 5227 43326616 43326836 1.430000e-70 278.0
22 TraesCS3D01G441600 chr2B 77.847 483 82 19 954 1424 793499916 793499447 5.160000e-70 276.0
23 TraesCS3D01G441600 chr2B 88.636 220 23 2 5010 5227 417074707 417074926 3.100000e-67 267.0
24 TraesCS3D01G441600 chr5B 89.189 222 21 3 5009 5227 290108477 290108256 1.850000e-69 274.0
25 TraesCS3D01G441600 chr5B 76.879 173 16 15 3217 3389 512547065 512546917 5.610000e-10 76.8
26 TraesCS3D01G441600 chr4A 89.401 217 19 3 5009 5222 188610864 188610649 2.400000e-68 270.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G441600 chr3D 551980034 551985260 5226 True 9653.000000 9653 100.000000 1 5227 1 chr3D.!!$R1 5226
1 TraesCS3D01G441600 chr3B 732425475 732431746 6271 True 639.100000 1910 89.737500 1 4640 8 chr3B.!!$R2 4639
2 TraesCS3D01G441600 chr3A 688672662 688677740 5078 True 643.428571 1214 88.562286 3 5015 7 chr3A.!!$R1 5012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 885 0.110509 TCGAAAACGACGACGAGGAG 60.111 55.0 15.32 1.61 42.66 3.69 F
1284 1480 0.111835 GTTCGTTCGTTCGTGTCTGC 60.112 55.0 2.67 0.00 0.00 4.26 F
2242 2573 0.037232 GTTCCGGACTGGGAGTTCAG 60.037 60.0 1.83 0.00 37.40 3.02 F
2845 3286 1.067295 ACCAGAAACCTGCATGGAGA 58.933 50.0 16.85 0.00 39.71 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 2184 0.178955 TGTTGTCCGGTACCTGGAGA 60.179 55.0 21.17 18.26 35.82 3.71 R
2806 3247 0.107508 ACAGGTGATTGATGCCGAGG 60.108 55.0 0.00 0.00 0.00 4.63 R
3820 4310 0.306228 CAACAATGTTGCCGTCGACA 59.694 50.0 17.16 0.00 40.65 4.35 R
4348 4849 0.108662 TGTGCTCTACTCGCCACATG 60.109 55.0 0.00 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
236 244 1.003355 CTTCAAGGAGGCTGCCGAA 60.003 57.895 13.96 9.26 0.00 4.30
239 247 0.179004 TCAAGGAGGCTGCCGAAAAA 60.179 50.000 13.96 0.00 0.00 1.94
249 257 0.396435 TGCCGAAAAAGAGCAGGAGA 59.604 50.000 0.00 0.00 31.65 3.71
266 280 4.648762 CAGGAGAAGAAGGAGAATGAGCTA 59.351 45.833 0.00 0.00 0.00 3.32
271 285 5.723887 AGAAGAAGGAGAATGAGCTAAAGGA 59.276 40.000 0.00 0.00 0.00 3.36
272 286 5.612725 AGAAGGAGAATGAGCTAAAGGAG 57.387 43.478 0.00 0.00 0.00 3.69
283 297 2.998316 CTAAAGGAGCAGGAGAAGGG 57.002 55.000 0.00 0.00 0.00 3.95
284 298 1.488393 CTAAAGGAGCAGGAGAAGGGG 59.512 57.143 0.00 0.00 0.00 4.79
285 299 0.178861 AAAGGAGCAGGAGAAGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
286 300 0.178861 AAGGAGCAGGAGAAGGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
287 301 0.620121 AGGAGCAGGAGAAGGGGAAG 60.620 60.000 0.00 0.00 0.00 3.46
288 302 0.618968 GGAGCAGGAGAAGGGGAAGA 60.619 60.000 0.00 0.00 0.00 2.87
289 303 1.280457 GAGCAGGAGAAGGGGAAGAA 58.720 55.000 0.00 0.00 0.00 2.52
290 304 1.209261 GAGCAGGAGAAGGGGAAGAAG 59.791 57.143 0.00 0.00 0.00 2.85
291 305 0.254462 GCAGGAGAAGGGGAAGAAGG 59.746 60.000 0.00 0.00 0.00 3.46
292 306 1.958288 CAGGAGAAGGGGAAGAAGGA 58.042 55.000 0.00 0.00 0.00 3.36
293 307 1.836802 CAGGAGAAGGGGAAGAAGGAG 59.163 57.143 0.00 0.00 0.00 3.69
294 308 0.544223 GGAGAAGGGGAAGAAGGAGC 59.456 60.000 0.00 0.00 0.00 4.70
295 309 1.280457 GAGAAGGGGAAGAAGGAGCA 58.720 55.000 0.00 0.00 0.00 4.26
296 310 1.630878 GAGAAGGGGAAGAAGGAGCAA 59.369 52.381 0.00 0.00 0.00 3.91
297 311 2.040412 GAGAAGGGGAAGAAGGAGCAAA 59.960 50.000 0.00 0.00 0.00 3.68
308 322 0.327591 AGGAGCAAAAGGAGCAGGAG 59.672 55.000 0.00 0.00 0.00 3.69
326 364 2.115427 GAGGAGGGGAAGAAGGAGAAG 58.885 57.143 0.00 0.00 0.00 2.85
345 383 1.290732 AGGAGGAAGAGGAGGAGAAGG 59.709 57.143 0.00 0.00 0.00 3.46
346 384 1.289530 GGAGGAAGAGGAGGAGAAGGA 59.710 57.143 0.00 0.00 0.00 3.36
347 385 2.666317 GAGGAAGAGGAGGAGAAGGAG 58.334 57.143 0.00 0.00 0.00 3.69
348 386 2.243736 GAGGAAGAGGAGGAGAAGGAGA 59.756 54.545 0.00 0.00 0.00 3.71
349 387 2.657459 AGGAAGAGGAGGAGAAGGAGAA 59.343 50.000 0.00 0.00 0.00 2.87
350 388 3.031013 GGAAGAGGAGGAGAAGGAGAAG 58.969 54.545 0.00 0.00 0.00 2.85
351 389 2.846665 AGAGGAGGAGAAGGAGAAGG 57.153 55.000 0.00 0.00 0.00 3.46
352 390 2.293246 AGAGGAGGAGAAGGAGAAGGA 58.707 52.381 0.00 0.00 0.00 3.36
353 391 2.244769 AGAGGAGGAGAAGGAGAAGGAG 59.755 54.545 0.00 0.00 0.00 3.69
354 392 2.243736 GAGGAGGAGAAGGAGAAGGAGA 59.756 54.545 0.00 0.00 0.00 3.71
355 393 2.657459 AGGAGGAGAAGGAGAAGGAGAA 59.343 50.000 0.00 0.00 0.00 2.87
356 394 3.031013 GGAGGAGAAGGAGAAGGAGAAG 58.969 54.545 0.00 0.00 0.00 2.85
361 399 2.837591 AGAAGGAGAAGGAGAAGAAGGC 59.162 50.000 0.00 0.00 0.00 4.35
464 558 2.666190 GTCTCGCAGTTGCAGGCA 60.666 61.111 4.84 0.00 42.21 4.75
483 582 4.759693 AGGCACAATAATCAACTGTTCGAA 59.240 37.500 0.00 0.00 0.00 3.71
503 602 0.733150 TGATCGTCGCGATTCTGTCT 59.267 50.000 14.06 0.00 47.00 3.41
550 654 0.672342 GCATGATCTGCCCATGTTCC 59.328 55.000 0.00 0.00 45.66 3.62
636 743 1.423921 AGAAAACATGGTTCCCGGTCT 59.576 47.619 0.00 0.00 0.00 3.85
638 745 0.768622 AAACATGGTTCCCGGTCTCA 59.231 50.000 0.00 0.00 0.00 3.27
644 751 1.592223 GTTCCCGGTCTCAGGAGTG 59.408 63.158 0.00 0.00 32.57 3.51
647 754 2.681778 CCGGTCTCAGGAGTGGCT 60.682 66.667 0.00 0.00 0.00 4.75
730 838 2.959465 AAAAACTCTGACCCAGGAGG 57.041 50.000 0.00 0.00 43.78 4.30
740 848 4.169452 CCAGGAGGGATGGTCCAA 57.831 61.111 0.00 0.00 38.64 3.53
742 850 0.621571 CCAGGAGGGATGGTCCAAGA 60.622 60.000 0.00 0.00 38.64 3.02
743 851 0.543749 CAGGAGGGATGGTCCAAGAC 59.456 60.000 0.00 0.00 38.64 3.01
768 879 2.589014 AGGTACATCGAAAACGACGAC 58.411 47.619 0.00 0.00 42.37 4.34
773 884 0.518636 ATCGAAAACGACGACGAGGA 59.481 50.000 15.32 3.91 42.37 3.71
774 885 0.110509 TCGAAAACGACGACGAGGAG 60.111 55.000 15.32 1.61 42.66 3.69
792 920 1.410882 GAGGCGTCCTATCTTTCAGCT 59.589 52.381 0.00 0.00 31.76 4.24
795 923 2.362717 GGCGTCCTATCTTTCAGCTAGT 59.637 50.000 0.00 0.00 0.00 2.57
797 925 4.434520 GCGTCCTATCTTTCAGCTAGTTT 58.565 43.478 0.00 0.00 0.00 2.66
800 928 5.044558 GTCCTATCTTTCAGCTAGTTTCGG 58.955 45.833 0.00 0.00 0.00 4.30
809 937 1.069668 AGCTAGTTTCGGTCCAAACGT 59.930 47.619 9.75 0.00 40.60 3.99
816 944 2.241880 CGGTCCAAACGTGTCGCTT 61.242 57.895 0.00 0.00 0.00 4.68
820 948 0.462225 TCCAAACGTGTCGCTTTCCA 60.462 50.000 0.00 0.00 0.00 3.53
943 1085 3.653009 GTTCACGCAGCAGCAGCA 61.653 61.111 10.77 0.00 45.49 4.41
970 1112 3.774702 GCGTCGCACGTTCCTTCC 61.775 66.667 13.44 0.00 44.73 3.46
978 1127 2.257371 CGTTCCTTCCTGCGTCGA 59.743 61.111 0.00 0.00 0.00 4.20
989 1138 1.006571 TGCGTCGAGTCCTTGTTCC 60.007 57.895 0.00 0.00 0.00 3.62
992 1141 1.872653 GCGTCGAGTCCTTGTTCCTTT 60.873 52.381 0.00 0.00 0.00 3.11
993 1142 2.059541 CGTCGAGTCCTTGTTCCTTTC 58.940 52.381 0.00 0.00 0.00 2.62
1110 1268 2.356793 GAGGCGGCGGATGATCAG 60.357 66.667 9.78 0.00 0.00 2.90
1137 1295 2.261671 GACAAGAAGGCGCCTCGA 59.738 61.111 32.93 0.00 0.00 4.04
1139 1297 2.048222 CAAGAAGGCGCCTCGACA 60.048 61.111 32.93 0.00 37.34 4.35
1140 1298 1.667830 CAAGAAGGCGCCTCGACAA 60.668 57.895 32.93 0.00 37.34 3.18
1143 1301 4.394712 AAGGCGCCTCGACAAGGG 62.395 66.667 32.93 0.00 46.32 3.95
1195 1356 2.202623 GCCTCACCGTCGCTGTAG 60.203 66.667 0.00 0.00 0.00 2.74
1198 1359 1.136984 CTCACCGTCGCTGTAGGTC 59.863 63.158 0.00 0.00 35.85 3.85
1199 1360 2.181021 CACCGTCGCTGTAGGTCC 59.819 66.667 0.00 0.00 35.85 4.46
1202 1363 2.754658 CGTCGCTGTAGGTCCCCT 60.755 66.667 0.00 0.00 37.71 4.79
1203 1364 2.772691 CGTCGCTGTAGGTCCCCTC 61.773 68.421 0.00 0.00 34.61 4.30
1204 1365 2.043248 TCGCTGTAGGTCCCCTCC 60.043 66.667 0.00 0.00 34.61 4.30
1205 1366 2.363795 CGCTGTAGGTCCCCTCCA 60.364 66.667 0.00 0.00 34.61 3.86
1207 1368 2.722201 GCTGTAGGTCCCCTCCACG 61.722 68.421 0.00 0.00 34.61 4.94
1208 1369 2.038329 TGTAGGTCCCCTCCACGG 59.962 66.667 0.00 0.00 34.61 4.94
1223 1412 2.372504 TCCACGGGTGTTTAATTCCTCA 59.627 45.455 0.00 0.00 0.00 3.86
1224 1413 2.486592 CCACGGGTGTTTAATTCCTCAC 59.513 50.000 0.00 0.00 0.00 3.51
1229 1422 3.763057 GGTGTTTAATTCCTCACCCAGT 58.237 45.455 12.11 0.00 42.90 4.00
1230 1423 3.506067 GGTGTTTAATTCCTCACCCAGTG 59.494 47.826 12.11 0.00 42.90 3.66
1249 1442 2.481952 GTGAGTTTCATGTCTGCCTGAC 59.518 50.000 0.00 0.00 45.54 3.51
1262 1458 0.178990 GCCTGACCCAAGTTCCAACT 60.179 55.000 0.00 0.00 42.04 3.16
1266 1462 1.283613 TGACCCAAGTTCCAACTGTGT 59.716 47.619 0.00 0.00 39.66 3.72
1267 1463 2.291282 TGACCCAAGTTCCAACTGTGTT 60.291 45.455 0.00 0.00 39.66 3.32
1268 1464 2.357952 GACCCAAGTTCCAACTGTGTTC 59.642 50.000 0.00 0.00 39.66 3.18
1279 1475 0.918619 ACTGTGTTCGTTCGTTCGTG 59.081 50.000 2.67 0.00 0.00 4.35
1282 1478 1.194495 GTGTTCGTTCGTTCGTGTCT 58.806 50.000 2.67 0.00 0.00 3.41
1284 1480 0.111835 GTTCGTTCGTTCGTGTCTGC 60.112 55.000 2.67 0.00 0.00 4.26
1287 1483 3.033764 TTCGTTCGTGTCTGCGCC 61.034 61.111 4.18 0.00 0.00 6.53
1432 1628 0.252284 TCCCACTCTCCCTCAAGGTC 60.252 60.000 0.00 0.00 36.75 3.85
1434 1630 1.268283 CCACTCTCCCTCAAGGTCCC 61.268 65.000 0.00 0.00 36.75 4.46
1437 1633 2.184631 TCTCCCTCAAGGTCCCCCT 61.185 63.158 0.00 0.00 45.63 4.79
1445 1641 4.252493 AGGTCCCCCTTCTGAACC 57.748 61.111 0.00 0.00 38.13 3.62
1448 1644 0.253020 GGTCCCCCTTCTGAACCCTA 60.253 60.000 0.00 0.00 0.00 3.53
1449 1645 0.910338 GTCCCCCTTCTGAACCCTAC 59.090 60.000 0.00 0.00 0.00 3.18
1450 1646 0.797579 TCCCCCTTCTGAACCCTACT 59.202 55.000 0.00 0.00 0.00 2.57
1452 1661 1.560146 CCCCCTTCTGAACCCTACTTC 59.440 57.143 0.00 0.00 0.00 3.01
1454 1663 2.552367 CCCTTCTGAACCCTACTTCCT 58.448 52.381 0.00 0.00 0.00 3.36
1457 1666 3.055021 CCTTCTGAACCCTACTTCCTTCC 60.055 52.174 0.00 0.00 0.00 3.46
1458 1667 3.562108 TCTGAACCCTACTTCCTTCCT 57.438 47.619 0.00 0.00 0.00 3.36
1462 1674 3.326880 TGAACCCTACTTCCTTCCTTGTC 59.673 47.826 0.00 0.00 0.00 3.18
1463 1675 2.267192 ACCCTACTTCCTTCCTTGTCC 58.733 52.381 0.00 0.00 0.00 4.02
1465 1677 2.237392 CCCTACTTCCTTCCTTGTCCTG 59.763 54.545 0.00 0.00 0.00 3.86
1477 1742 1.069823 CTTGTCCTGTCAGACTGCAGT 59.930 52.381 21.88 21.88 37.66 4.40
1484 1749 1.136110 TGTCAGACTGCAGTTTCGTCA 59.864 47.619 22.65 12.96 0.00 4.35
1485 1750 1.523095 GTCAGACTGCAGTTTCGTCAC 59.477 52.381 22.65 6.05 0.00 3.67
1489 1786 1.151777 ACTGCAGTTTCGTCACACCG 61.152 55.000 15.25 0.00 0.00 4.94
1514 1811 3.431922 TTGTTCTCAACTTCTCGTCGT 57.568 42.857 0.00 0.00 0.00 4.34
1515 1812 4.556942 TTGTTCTCAACTTCTCGTCGTA 57.443 40.909 0.00 0.00 0.00 3.43
1516 1813 3.881795 TGTTCTCAACTTCTCGTCGTAC 58.118 45.455 0.00 0.00 0.00 3.67
1517 1814 2.869358 TCTCAACTTCTCGTCGTACG 57.131 50.000 9.53 9.53 44.19 3.67
1554 1851 0.249657 GAGAATTCCAGATCGCGGCT 60.250 55.000 6.13 0.45 0.00 5.52
1621 1918 0.529378 GGGATCTTGCTGCAAGGTTG 59.471 55.000 34.49 16.18 41.33 3.77
1642 1939 4.348198 GCTTACAAGAAGCATGGAGAAC 57.652 45.455 4.45 0.00 42.56 3.01
1643 1940 3.753272 GCTTACAAGAAGCATGGAGAACA 59.247 43.478 4.45 0.00 42.56 3.18
1644 1941 4.378874 GCTTACAAGAAGCATGGAGAACAC 60.379 45.833 4.45 0.00 42.56 3.32
1645 1942 3.498774 ACAAGAAGCATGGAGAACACT 57.501 42.857 0.00 0.00 0.00 3.55
1646 1943 3.144506 ACAAGAAGCATGGAGAACACTG 58.855 45.455 0.00 0.00 0.00 3.66
1647 1944 3.181451 ACAAGAAGCATGGAGAACACTGA 60.181 43.478 0.00 0.00 0.00 3.41
1648 1945 3.996921 AGAAGCATGGAGAACACTGAT 57.003 42.857 0.00 0.00 0.00 2.90
1649 1946 3.871485 AGAAGCATGGAGAACACTGATC 58.129 45.455 0.00 0.00 0.00 2.92
1650 1947 3.518705 AGAAGCATGGAGAACACTGATCT 59.481 43.478 0.00 0.00 0.00 2.75
1651 1948 3.263489 AGCATGGAGAACACTGATCTG 57.737 47.619 0.00 0.00 0.00 2.90
1652 1949 2.570752 AGCATGGAGAACACTGATCTGT 59.429 45.455 0.00 0.00 0.00 3.41
1653 1950 3.008813 AGCATGGAGAACACTGATCTGTT 59.991 43.478 1.95 1.03 37.06 3.16
1654 1951 3.755378 GCATGGAGAACACTGATCTGTTT 59.245 43.478 1.95 1.81 34.40 2.83
1657 1954 5.545063 TGGAGAACACTGATCTGTTTACA 57.455 39.130 1.95 0.45 34.40 2.41
1661 1958 5.680619 AGAACACTGATCTGTTTACACCAA 58.319 37.500 1.95 0.00 34.40 3.67
1676 1973 8.780249 TGTTTACACCAATTAGCTTCTTAAGTC 58.220 33.333 1.63 0.00 0.00 3.01
1679 1976 7.010339 ACACCAATTAGCTTCTTAAGTCTCT 57.990 36.000 1.63 0.97 0.00 3.10
1703 2000 6.237901 TCTGTTATACAAATGCCTCTGTGTT 58.762 36.000 0.00 0.00 0.00 3.32
1705 2002 7.230510 TCTGTTATACAAATGCCTCTGTGTTTT 59.769 33.333 0.00 0.00 0.00 2.43
1710 2007 3.996150 AATGCCTCTGTGTTTTGACAG 57.004 42.857 0.00 0.00 44.14 3.51
1716 2014 4.832576 CCTCTGTGTTTTGACAGTGGTCG 61.833 52.174 11.81 0.00 46.08 4.79
1778 2102 2.490509 ACATCAGCAATGTGTCACCATG 59.509 45.455 0.00 0.69 47.00 3.66
1780 2104 2.153645 TCAGCAATGTGTCACCATGTC 58.846 47.619 0.00 0.00 0.00 3.06
1781 2105 1.200716 CAGCAATGTGTCACCATGTCC 59.799 52.381 0.00 0.00 0.00 4.02
1782 2106 1.202915 AGCAATGTGTCACCATGTCCA 60.203 47.619 0.00 0.00 0.00 4.02
1783 2107 1.820519 GCAATGTGTCACCATGTCCAT 59.179 47.619 0.00 0.00 0.00 3.41
1784 2108 3.016031 GCAATGTGTCACCATGTCCATA 58.984 45.455 0.00 0.00 0.00 2.74
1785 2109 3.181497 GCAATGTGTCACCATGTCCATAC 60.181 47.826 0.00 0.00 0.00 2.39
1786 2110 2.378445 TGTGTCACCATGTCCATACG 57.622 50.000 0.00 0.00 0.00 3.06
1818 2142 0.742281 CCCACGCTCCAGATGAACTG 60.742 60.000 0.00 0.00 45.36 3.16
1846 2170 4.002982 TGGAGTTGACATGAAGCACATAC 58.997 43.478 0.00 0.00 37.46 2.39
1857 2181 3.014036 CACATACGATGGTGCGGC 58.986 61.111 0.00 0.00 35.12 6.53
1860 2184 0.463654 ACATACGATGGTGCGGCATT 60.464 50.000 5.72 0.00 35.12 3.56
1872 2196 1.227263 CGGCATTCTCCAGGTACCG 60.227 63.158 6.18 1.26 0.00 4.02
1876 2200 1.191535 CATTCTCCAGGTACCGGACA 58.808 55.000 14.25 5.21 0.00 4.02
1879 2203 0.178955 TCTCCAGGTACCGGACAACA 60.179 55.000 14.25 0.00 0.00 3.33
1882 2206 0.323629 CCAGGTACCGGACAACACAT 59.676 55.000 14.25 0.00 0.00 3.21
1884 2208 2.613691 CAGGTACCGGACAACACATAC 58.386 52.381 9.46 0.00 0.00 2.39
1890 2214 1.677820 CCGGACAACACATACTTCCCC 60.678 57.143 0.00 0.00 0.00 4.81
1892 2216 2.498481 CGGACAACACATACTTCCCCTA 59.502 50.000 0.00 0.00 0.00 3.53
1893 2217 3.134081 CGGACAACACATACTTCCCCTAT 59.866 47.826 0.00 0.00 0.00 2.57
1894 2218 4.342951 CGGACAACACATACTTCCCCTATA 59.657 45.833 0.00 0.00 0.00 1.31
1895 2219 5.011738 CGGACAACACATACTTCCCCTATAT 59.988 44.000 0.00 0.00 0.00 0.86
1927 2251 9.185192 GAAAAGAATGTATGCATTATTACCAGC 57.815 33.333 15.34 0.00 43.28 4.85
1938 2262 6.540551 TGCATTATTACCAGCGAGTGATTTTA 59.459 34.615 0.00 0.00 0.00 1.52
1945 2269 4.142600 ACCAGCGAGTGATTTTATCTTTGC 60.143 41.667 0.00 0.00 0.00 3.68
1946 2270 4.095483 CCAGCGAGTGATTTTATCTTTGCT 59.905 41.667 0.00 0.00 35.87 3.91
1947 2271 5.392380 CCAGCGAGTGATTTTATCTTTGCTT 60.392 40.000 0.00 0.00 34.39 3.91
2010 2334 3.498777 TCATAGAGATCGCGACGAAAGAT 59.501 43.478 12.93 0.00 39.99 2.40
2059 2383 4.763793 CAGGCTTCTTCTCAATTTTCAGGA 59.236 41.667 0.00 0.00 0.00 3.86
2065 2389 7.120432 GCTTCTTCTCAATTTTCAGGATGTACT 59.880 37.037 0.00 0.00 37.40 2.73
2073 2397 3.981071 TTCAGGATGTACTTGTCCCAG 57.019 47.619 8.34 3.76 37.40 4.45
2090 2414 7.124573 TGTCCCAGTGGTATATATGCATATC 57.875 40.000 22.33 9.10 0.00 1.63
2093 2417 6.327365 TCCCAGTGGTATATATGCATATCCAG 59.673 42.308 22.33 12.23 31.02 3.86
2095 2419 7.212976 CCAGTGGTATATATGCATATCCAGAC 58.787 42.308 22.33 13.09 31.02 3.51
2096 2420 7.212976 CAGTGGTATATATGCATATCCAGACC 58.787 42.308 22.33 20.80 31.02 3.85
2097 2421 7.070447 CAGTGGTATATATGCATATCCAGACCT 59.930 40.741 23.97 16.05 31.02 3.85
2098 2422 7.625280 AGTGGTATATATGCATATCCAGACCTT 59.375 37.037 23.97 14.77 31.02 3.50
2099 2423 8.267894 GTGGTATATATGCATATCCAGACCTTT 58.732 37.037 23.97 5.06 31.02 3.11
2100 2424 8.835734 TGGTATATATGCATATCCAGACCTTTT 58.164 33.333 23.97 4.64 29.04 2.27
2101 2425 9.686683 GGTATATATGCATATCCAGACCTTTTT 57.313 33.333 22.33 0.00 0.00 1.94
2147 2478 7.306399 GCATTGCAGATTTCACATACTAATTGC 60.306 37.037 3.15 0.00 0.00 3.56
2151 2482 4.275936 AGATTTCACATACTAATTGCGGCC 59.724 41.667 0.00 0.00 0.00 6.13
2186 2517 3.369756 CAAGGATTGTTGCATGTTGCATC 59.630 43.478 2.61 3.45 45.61 3.91
2198 2529 5.839621 GCATGTTGCATCCTTTTGATCTAT 58.160 37.500 0.00 0.00 44.26 1.98
2210 2541 6.659242 TCCTTTTGATCTATTTGTCCCTTGTC 59.341 38.462 0.00 0.00 0.00 3.18
2242 2573 0.037232 GTTCCGGACTGGGAGTTCAG 60.037 60.000 1.83 0.00 37.40 3.02
2255 2586 1.197721 GAGTTCAGGGTGCGAAATGTG 59.802 52.381 0.00 0.00 0.00 3.21
2263 2594 1.073025 TGCGAAATGTGGACAGCCT 59.927 52.632 0.00 0.00 34.31 4.58
2264 2595 1.236616 TGCGAAATGTGGACAGCCTG 61.237 55.000 0.00 0.00 34.31 4.85
2300 2631 8.522178 AAGTTTTAACAGTATGAGACTTCTCG 57.478 34.615 1.86 0.00 45.72 4.04
2349 2687 7.990541 TTTTCTTGTGAGATTGTTGATGTTG 57.009 32.000 0.00 0.00 0.00 3.33
2406 2803 6.619173 GCATCGTATTGCATGCTGAATTAGC 61.619 44.000 20.33 10.39 46.14 3.09
2421 2818 5.762045 TGAATTAGCTGAGTCAAAGTTTGC 58.238 37.500 6.13 6.35 0.00 3.68
2433 2830 9.719355 TGAGTCAAAGTTTGCATAGATAGTTTA 57.281 29.630 10.90 0.00 0.00 2.01
2435 2832 9.502091 AGTCAAAGTTTGCATAGATAGTTTACA 57.498 29.630 10.90 0.00 0.00 2.41
2544 2941 3.635331 CCATGACAAGCTGAACAAACTG 58.365 45.455 0.00 0.00 0.00 3.16
2657 3095 2.346766 ACTCAAACTGTGCCATGACA 57.653 45.000 0.00 0.00 0.00 3.58
2681 3122 4.673311 GTGTTATTGTTTTGCACCTGTACG 59.327 41.667 0.00 0.00 0.00 3.67
2806 3247 4.102035 AGGTTACATCGACCGTAAAGTC 57.898 45.455 10.06 4.98 42.11 3.01
2845 3286 1.067295 ACCAGAAACCTGCATGGAGA 58.933 50.000 16.85 0.00 39.71 3.71
2894 3335 6.709145 TTGCAGATAACAAAACATTCATGC 57.291 33.333 0.00 0.00 0.00 4.06
2974 3420 3.041946 GGACTGTACTGATGATTCCCCT 58.958 50.000 6.77 0.00 0.00 4.79
2975 3421 3.456277 GGACTGTACTGATGATTCCCCTT 59.544 47.826 6.77 0.00 0.00 3.95
3089 3535 3.196254 GCATGTCAATGGTGGGATTTCTT 59.804 43.478 0.00 0.00 34.09 2.52
3099 3545 5.684704 TGGTGGGATTTCTTATCATCTGAC 58.315 41.667 0.00 0.00 0.00 3.51
3103 3549 6.642950 GTGGGATTTCTTATCATCTGACGTAG 59.357 42.308 0.00 0.00 0.00 3.51
3138 3584 4.868171 TCACTGTTCTGTGTTGTAGTTCAC 59.132 41.667 9.04 0.00 38.90 3.18
3153 3599 4.207891 AGTTCACTGTTGACACTGTTCT 57.792 40.909 0.00 0.00 33.01 3.01
3161 3607 7.335673 TCACTGTTGACACTGTTCTTTGATAAA 59.664 33.333 0.00 0.00 33.01 1.40
3162 3608 7.967854 CACTGTTGACACTGTTCTTTGATAAAA 59.032 33.333 0.00 0.00 33.01 1.52
3186 3632 1.086696 GCAGCTCATTTTCAGCGGTA 58.913 50.000 0.00 0.00 42.14 4.02
3284 3730 5.334182 GCTTTTTCTGTTGGTGTAGAGTAGC 60.334 44.000 0.00 0.00 0.00 3.58
3287 3733 4.311520 TCTGTTGGTGTAGAGTAGCCTA 57.688 45.455 0.00 0.00 0.00 3.93
3306 3752 4.497291 CTACTCTGAGTAGGGACTGACT 57.503 50.000 29.06 0.00 43.37 3.41
3307 3753 5.617528 CTACTCTGAGTAGGGACTGACTA 57.382 47.826 29.06 3.16 43.37 2.59
3308 3754 4.224991 ACTCTGAGTAGGGACTGACTAC 57.775 50.000 8.91 0.00 41.52 2.73
3309 3755 3.587951 ACTCTGAGTAGGGACTGACTACA 59.412 47.826 8.91 0.00 42.47 2.74
3310 3756 4.043059 ACTCTGAGTAGGGACTGACTACAA 59.957 45.833 8.91 0.00 42.47 2.41
3311 3757 4.333690 TCTGAGTAGGGACTGACTACAAC 58.666 47.826 5.52 0.75 42.47 3.32
3312 3758 4.079970 CTGAGTAGGGACTGACTACAACA 58.920 47.826 5.52 4.56 42.47 3.33
3313 3759 3.825014 TGAGTAGGGACTGACTACAACAC 59.175 47.826 5.52 0.00 42.47 3.32
3314 3760 3.825014 GAGTAGGGACTGACTACAACACA 59.175 47.826 5.52 0.00 42.47 3.72
3315 3761 4.417437 AGTAGGGACTGACTACAACACAT 58.583 43.478 5.52 0.00 42.47 3.21
3316 3762 5.577100 AGTAGGGACTGACTACAACACATA 58.423 41.667 5.52 0.00 42.47 2.29
3317 3763 6.014647 AGTAGGGACTGACTACAACACATAA 58.985 40.000 5.52 0.00 42.47 1.90
3318 3764 6.668283 AGTAGGGACTGACTACAACACATAAT 59.332 38.462 5.52 0.00 42.47 1.28
3319 3765 5.734720 AGGGACTGACTACAACACATAATG 58.265 41.667 0.00 0.00 37.18 1.90
3320 3766 4.332819 GGGACTGACTACAACACATAATGC 59.667 45.833 0.00 0.00 0.00 3.56
3321 3767 5.178797 GGACTGACTACAACACATAATGCT 58.821 41.667 0.00 0.00 0.00 3.79
3340 3786 9.740239 ATAATGCTGATTGTTGACATGTTTATC 57.260 29.630 0.00 0.20 0.00 1.75
3341 3787 6.572167 TGCTGATTGTTGACATGTTTATCA 57.428 33.333 0.00 4.73 0.00 2.15
3349 3795 4.880886 TGACATGTTTATCATTCCTGCG 57.119 40.909 0.00 0.00 34.09 5.18
3454 3900 4.464597 ACTTCTCTCATGGTAACCAGAGTC 59.535 45.833 6.72 0.00 36.75 3.36
3457 3903 3.099905 TCTCATGGTAACCAGAGTCCAG 58.900 50.000 0.00 0.00 36.75 3.86
3464 3910 3.830755 GGTAACCAGAGTCCAGAGTACAA 59.169 47.826 0.00 0.00 0.00 2.41
3466 3912 5.221581 GGTAACCAGAGTCCAGAGTACAAAA 60.222 44.000 0.00 0.00 0.00 2.44
3468 3914 6.681729 AACCAGAGTCCAGAGTACAAAATA 57.318 37.500 0.00 0.00 0.00 1.40
3469 3915 6.038997 ACCAGAGTCCAGAGTACAAAATAC 57.961 41.667 0.00 0.00 0.00 1.89
3472 3918 6.455647 CAGAGTCCAGAGTACAAAATACACA 58.544 40.000 0.00 0.00 0.00 3.72
3473 3919 7.099764 CAGAGTCCAGAGTACAAAATACACAT 58.900 38.462 0.00 0.00 0.00 3.21
3474 3920 7.604164 CAGAGTCCAGAGTACAAAATACACATT 59.396 37.037 0.00 0.00 0.00 2.71
3475 3921 7.819900 AGAGTCCAGAGTACAAAATACACATTC 59.180 37.037 0.00 0.00 0.00 2.67
3476 3922 7.450074 AGTCCAGAGTACAAAATACACATTCA 58.550 34.615 0.00 0.00 0.00 2.57
3477 3923 8.103305 AGTCCAGAGTACAAAATACACATTCAT 58.897 33.333 0.00 0.00 0.00 2.57
3478 3924 8.391106 GTCCAGAGTACAAAATACACATTCATC 58.609 37.037 0.00 0.00 0.00 2.92
3479 3925 8.100164 TCCAGAGTACAAAATACACATTCATCA 58.900 33.333 0.00 0.00 0.00 3.07
3480 3926 8.393366 CCAGAGTACAAAATACACATTCATCAG 58.607 37.037 0.00 0.00 0.00 2.90
3581 4031 1.396301 GCAGCGATTCCTCTGAACAAG 59.604 52.381 5.14 0.00 32.13 3.16
3752 4242 8.893219 AAAAAGAGAATTTTCAAATCCTCCAC 57.107 30.769 0.00 0.00 30.91 4.02
3772 4262 3.626217 CACATGACATTCCATGAGTCCAG 59.374 47.826 10.42 0.00 44.98 3.86
3812 4302 2.775960 TGATCTTCCATGGCTGACATCT 59.224 45.455 6.96 0.00 37.84 2.90
3820 4310 2.502142 TGGCTGACATCTTGAGCATT 57.498 45.000 0.00 0.00 34.20 3.56
3828 4318 1.325640 CATCTTGAGCATTGTCGACGG 59.674 52.381 11.62 4.16 0.00 4.79
3847 4337 1.866601 GGCAACATTGTTGAAACCTGC 59.133 47.619 29.04 14.78 0.00 4.85
3865 4355 2.204291 TGGCTTCCCCAGGTGGAT 60.204 61.111 0.00 0.00 39.18 3.41
3891 4381 1.226974 GCCTGCGCTATGTCTTCGA 60.227 57.895 9.73 0.00 0.00 3.71
3989 4479 2.103736 GCTGGTACTACGACGGGC 59.896 66.667 0.00 0.00 0.00 6.13
3994 4484 1.140375 GTACTACGACGGGCCCAAG 59.860 63.158 24.92 14.78 0.00 3.61
4011 4501 3.433031 CCCAAGAACACACTGGTAACTGA 60.433 47.826 0.00 0.00 39.15 3.41
4012 4502 3.809832 CCAAGAACACACTGGTAACTGAG 59.190 47.826 0.00 0.00 39.15 3.35
4070 4571 2.061773 ACACGCTGAGAAATTCTGTCG 58.938 47.619 0.00 3.56 33.75 4.35
4184 4685 4.093291 CTGCTCTGGGCGCTCCTT 62.093 66.667 3.94 0.00 45.43 3.36
4227 4728 2.358405 GGGGTCTACTGGAAGCTCTAGT 60.358 54.545 7.21 7.21 41.27 2.57
4289 4790 6.485313 TGTGTTGGAACTTAGAATTGTGTAGG 59.515 38.462 0.00 0.00 0.00 3.18
4302 4803 7.624549 AGAATTGTGTAGGATGTGTGTAAGAT 58.375 34.615 0.00 0.00 0.00 2.40
4313 4814 6.428159 GGATGTGTGTAAGATGACAAGAAACT 59.572 38.462 0.00 0.00 0.00 2.66
4348 4849 1.451028 GGCTCACTGACTGCCCATC 60.451 63.158 0.00 0.00 40.71 3.51
4376 4883 2.724454 GAGTAGAGCACACCTACCAGA 58.276 52.381 0.00 0.00 37.74 3.86
4399 4906 3.054065 GGGAGTGGGAGATCAAAGTCATT 60.054 47.826 0.00 0.00 0.00 2.57
4412 4919 5.263599 TCAAAGTCATTGACTGCCCATTAT 58.736 37.500 19.65 0.00 42.59 1.28
4441 5035 8.813282 TGCTATAACAAGTACGTACATTTCATG 58.187 33.333 26.55 16.21 0.00 3.07
4463 5057 7.608376 TCATGGAAAATGATAAGTTGTCGGTTA 59.392 33.333 0.00 0.00 0.00 2.85
4465 5059 8.167605 TGGAAAATGATAAGTTGTCGGTTAAA 57.832 30.769 0.00 0.00 0.00 1.52
4503 5097 3.244976 CGCAAAAGGATTCCAACATGAC 58.755 45.455 5.29 0.00 0.00 3.06
4579 5173 5.091261 AGATGTATGGTGAAGAGGTGAAC 57.909 43.478 0.00 0.00 0.00 3.18
4589 5183 3.510360 TGAAGAGGTGAACTAGTGTAGCC 59.490 47.826 0.00 0.00 0.00 3.93
4597 6714 3.958798 TGAACTAGTGTAGCCTATGGGAC 59.041 47.826 0.00 0.00 33.58 4.46
4677 6795 6.321848 TGCTTATGATTAGCACATCCATTG 57.678 37.500 1.49 0.00 43.30 2.82
4687 6805 4.220724 AGCACATCCATTGGCTTATGATT 58.779 39.130 9.25 0.00 30.55 2.57
4691 6809 6.152323 GCACATCCATTGGCTTATGATTATCT 59.848 38.462 9.25 0.00 0.00 1.98
4721 6839 9.566432 GTCTGATCCAACTTTCCAGAAATATAT 57.434 33.333 0.00 0.00 35.89 0.86
4782 6900 7.825681 TCTTTGATTTTCTGAAACTGTTCACA 58.174 30.769 1.58 0.00 38.88 3.58
4833 6951 0.822164 AAATCCAATGCCAGCTGAGC 59.178 50.000 17.39 17.32 0.00 4.26
4836 6954 1.980232 CCAATGCCAGCTGAGCCAA 60.980 57.895 17.39 2.48 0.00 4.52
4870 6988 3.377485 AGCAAGCTACAAATCATCAGCTG 59.623 43.478 7.63 7.63 43.39 4.24
4880 6998 0.462581 TCATCAGCTGGAATCACGCC 60.463 55.000 15.13 0.00 0.00 5.68
4893 7012 3.698029 ATCACGCCATCATGCTTTTAC 57.302 42.857 0.00 0.00 0.00 2.01
4937 7056 9.783081 AAACATCTACTATATGCAATGATGTGA 57.217 29.630 0.00 0.91 41.09 3.58
4938 7057 9.955102 AACATCTACTATATGCAATGATGTGAT 57.045 29.630 0.00 2.77 41.09 3.06
4966 7085 9.524106 CATTTATGCTGTGATGTTACAATCATT 57.476 29.630 0.00 0.00 38.76 2.57
5016 7135 2.914379 GGTGTGAAACCGAGAGTGG 58.086 57.895 0.00 0.00 39.81 4.00
5017 7136 0.602905 GGTGTGAAACCGAGAGTGGG 60.603 60.000 0.00 0.00 39.81 4.61
5018 7137 0.106149 GTGTGAAACCGAGAGTGGGT 59.894 55.000 0.00 0.00 40.20 4.51
5023 7142 2.256117 AAACCGAGAGTGGGTTCTTG 57.744 50.000 0.00 0.00 46.75 3.02
5024 7143 1.202770 AAACCGAGAGTGGGTTCTTGG 60.203 52.381 7.59 7.59 46.75 3.61
5027 7146 1.797025 CGAGAGTGGGTTCTTGGAAC 58.203 55.000 2.19 2.19 0.00 3.62
5028 7147 1.070134 CGAGAGTGGGTTCTTGGAACA 59.930 52.381 11.67 0.00 0.00 3.18
5029 7148 2.289694 CGAGAGTGGGTTCTTGGAACAT 60.290 50.000 11.67 0.00 39.30 2.71
5030 7149 3.077359 GAGAGTGGGTTCTTGGAACATG 58.923 50.000 11.67 0.00 39.30 3.21
5031 7150 2.162681 GAGTGGGTTCTTGGAACATGG 58.837 52.381 11.67 0.00 39.30 3.66
5032 7151 1.203050 AGTGGGTTCTTGGAACATGGG 60.203 52.381 11.67 0.00 39.30 4.00
5033 7152 0.856982 TGGGTTCTTGGAACATGGGT 59.143 50.000 11.67 0.00 39.30 4.51
5034 7153 1.256812 GGGTTCTTGGAACATGGGTG 58.743 55.000 11.67 0.00 39.30 4.61
5035 7154 0.603065 GGTTCTTGGAACATGGGTGC 59.397 55.000 11.67 0.00 39.30 5.01
5036 7155 1.327303 GTTCTTGGAACATGGGTGCA 58.673 50.000 0.00 0.00 39.30 4.57
5037 7156 1.895131 GTTCTTGGAACATGGGTGCAT 59.105 47.619 0.00 0.00 39.30 3.96
5038 7157 2.299867 GTTCTTGGAACATGGGTGCATT 59.700 45.455 0.00 0.00 39.30 3.56
5039 7158 1.894466 TCTTGGAACATGGGTGCATTG 59.106 47.619 0.00 0.00 39.30 2.82
5040 7159 0.975135 TTGGAACATGGGTGCATTGG 59.025 50.000 0.00 0.00 39.30 3.16
5041 7160 0.113972 TGGAACATGGGTGCATTGGA 59.886 50.000 0.00 0.00 0.00 3.53
5042 7161 0.819582 GGAACATGGGTGCATTGGAG 59.180 55.000 0.00 0.00 0.00 3.86
5043 7162 0.819582 GAACATGGGTGCATTGGAGG 59.180 55.000 0.00 0.00 0.00 4.30
5044 7163 0.409092 AACATGGGTGCATTGGAGGA 59.591 50.000 0.00 0.00 0.00 3.71
5045 7164 0.323725 ACATGGGTGCATTGGAGGAC 60.324 55.000 0.00 0.00 0.00 3.85
5046 7165 0.033796 CATGGGTGCATTGGAGGACT 60.034 55.000 0.00 0.00 0.00 3.85
5047 7166 0.706433 ATGGGTGCATTGGAGGACTT 59.294 50.000 0.00 0.00 0.00 3.01
5048 7167 0.482446 TGGGTGCATTGGAGGACTTT 59.518 50.000 0.00 0.00 0.00 2.66
5049 7168 1.707989 TGGGTGCATTGGAGGACTTTA 59.292 47.619 0.00 0.00 0.00 1.85
5050 7169 2.311542 TGGGTGCATTGGAGGACTTTAT 59.688 45.455 0.00 0.00 0.00 1.40
5051 7170 3.245586 TGGGTGCATTGGAGGACTTTATT 60.246 43.478 0.00 0.00 0.00 1.40
5052 7171 3.769300 GGGTGCATTGGAGGACTTTATTT 59.231 43.478 0.00 0.00 0.00 1.40
5053 7172 4.222810 GGGTGCATTGGAGGACTTTATTTT 59.777 41.667 0.00 0.00 0.00 1.82
5054 7173 5.420739 GGGTGCATTGGAGGACTTTATTTTA 59.579 40.000 0.00 0.00 0.00 1.52
5055 7174 6.071051 GGGTGCATTGGAGGACTTTATTTTAA 60.071 38.462 0.00 0.00 0.00 1.52
5056 7175 7.382898 GGTGCATTGGAGGACTTTATTTTAAA 58.617 34.615 0.00 0.00 0.00 1.52
5057 7176 8.040727 GGTGCATTGGAGGACTTTATTTTAAAT 58.959 33.333 0.00 0.00 0.00 1.40
5131 7250 9.842775 ACATGATCATATGGATGGATATTACAC 57.157 33.333 8.15 0.00 36.00 2.90
5132 7251 9.281371 CATGATCATATGGATGGATATTACACC 57.719 37.037 8.15 0.00 36.00 4.16
5133 7252 7.805163 TGATCATATGGATGGATATTACACCC 58.195 38.462 2.13 0.00 36.00 4.61
5134 7253 6.233905 TCATATGGATGGATATTACACCCG 57.766 41.667 2.13 0.00 33.49 5.28
5135 7254 5.724370 TCATATGGATGGATATTACACCCGT 59.276 40.000 2.13 0.00 33.49 5.28
5136 7255 3.762407 TGGATGGATATTACACCCGTG 57.238 47.619 0.00 0.00 0.00 4.94
5137 7256 3.042682 TGGATGGATATTACACCCGTGT 58.957 45.455 5.69 5.69 46.87 4.49
5138 7257 4.224762 TGGATGGATATTACACCCGTGTA 58.775 43.478 3.57 3.57 44.42 2.90
5147 7266 2.351706 ACACCCGTGTAATGTTTGGT 57.648 45.000 0.00 0.00 42.90 3.67
5148 7267 1.950909 ACACCCGTGTAATGTTTGGTG 59.049 47.619 0.00 5.01 46.70 4.17
5149 7268 2.222886 CACCCGTGTAATGTTTGGTGA 58.777 47.619 0.00 0.00 44.69 4.02
5150 7269 2.031508 CACCCGTGTAATGTTTGGTGAC 60.032 50.000 0.00 0.00 44.69 3.67
5151 7270 1.195900 CCCGTGTAATGTTTGGTGACG 59.804 52.381 0.00 0.00 0.00 4.35
5152 7271 2.136728 CCGTGTAATGTTTGGTGACGA 58.863 47.619 0.00 0.00 0.00 4.20
5153 7272 2.544686 CCGTGTAATGTTTGGTGACGAA 59.455 45.455 0.00 0.00 0.00 3.85
5154 7273 3.002451 CCGTGTAATGTTTGGTGACGAAA 59.998 43.478 0.00 0.00 34.87 3.46
5155 7274 4.319911 CCGTGTAATGTTTGGTGACGAAAT 60.320 41.667 0.00 0.00 34.87 2.17
5156 7275 5.107026 CCGTGTAATGTTTGGTGACGAAATA 60.107 40.000 0.00 0.00 34.87 1.40
5157 7276 6.364261 CGTGTAATGTTTGGTGACGAAATAA 58.636 36.000 0.00 0.00 34.87 1.40
5158 7277 6.518395 CGTGTAATGTTTGGTGACGAAATAAG 59.482 38.462 0.00 0.00 34.87 1.73
5159 7278 7.357303 GTGTAATGTTTGGTGACGAAATAAGT 58.643 34.615 0.00 0.00 34.87 2.24
5160 7279 8.497554 GTGTAATGTTTGGTGACGAAATAAGTA 58.502 33.333 0.00 0.00 34.87 2.24
5161 7280 9.053840 TGTAATGTTTGGTGACGAAATAAGTAA 57.946 29.630 0.00 0.00 34.87 2.24
5162 7281 9.881529 GTAATGTTTGGTGACGAAATAAGTAAA 57.118 29.630 0.00 0.00 34.87 2.01
5163 7282 8.791355 AATGTTTGGTGACGAAATAAGTAAAC 57.209 30.769 0.00 0.00 34.87 2.01
5164 7283 7.317842 TGTTTGGTGACGAAATAAGTAAACA 57.682 32.000 0.00 0.00 34.87 2.83
5165 7284 7.932335 TGTTTGGTGACGAAATAAGTAAACAT 58.068 30.769 0.00 0.00 34.87 2.71
5166 7285 7.858382 TGTTTGGTGACGAAATAAGTAAACATG 59.142 33.333 0.00 0.00 34.87 3.21
5167 7286 7.499321 TTGGTGACGAAATAAGTAAACATGT 57.501 32.000 0.00 0.00 0.00 3.21
5168 7287 6.893759 TGGTGACGAAATAAGTAAACATGTG 58.106 36.000 0.00 0.00 0.00 3.21
5169 7288 6.706716 TGGTGACGAAATAAGTAAACATGTGA 59.293 34.615 0.00 0.00 0.00 3.58
5170 7289 7.095397 TGGTGACGAAATAAGTAAACATGTGAG 60.095 37.037 0.00 0.00 0.00 3.51
5171 7290 6.736853 GTGACGAAATAAGTAAACATGTGAGC 59.263 38.462 0.00 0.00 0.00 4.26
5172 7291 6.649141 TGACGAAATAAGTAAACATGTGAGCT 59.351 34.615 0.00 0.00 0.00 4.09
5173 7292 7.815549 TGACGAAATAAGTAAACATGTGAGCTA 59.184 33.333 0.00 0.00 0.00 3.32
5174 7293 8.718102 ACGAAATAAGTAAACATGTGAGCTAT 57.282 30.769 0.00 0.00 0.00 2.97
5175 7294 8.604035 ACGAAATAAGTAAACATGTGAGCTATG 58.396 33.333 0.00 0.00 0.00 2.23
5176 7295 8.604035 CGAAATAAGTAAACATGTGAGCTATGT 58.396 33.333 0.00 0.00 40.30 2.29
5185 7304 8.970691 AAACATGTGAGCTATGTAAAAATGAC 57.029 30.769 0.00 0.00 37.77 3.06
5186 7305 7.686438 ACATGTGAGCTATGTAAAAATGACA 57.314 32.000 0.00 0.00 37.02 3.58
5187 7306 8.109705 ACATGTGAGCTATGTAAAAATGACAA 57.890 30.769 0.00 0.00 37.02 3.18
5188 7307 8.575589 ACATGTGAGCTATGTAAAAATGACAAA 58.424 29.630 0.00 0.00 37.02 2.83
5189 7308 9.409312 CATGTGAGCTATGTAAAAATGACAAAA 57.591 29.630 0.00 0.00 0.00 2.44
5191 7310 9.409312 TGTGAGCTATGTAAAAATGACAAAATG 57.591 29.630 0.00 0.00 0.00 2.32
5192 7311 9.624697 GTGAGCTATGTAAAAATGACAAAATGA 57.375 29.630 0.00 0.00 0.00 2.57
5193 7312 9.624697 TGAGCTATGTAAAAATGACAAAATGAC 57.375 29.630 0.00 0.00 0.00 3.06
5194 7313 8.673626 AGCTATGTAAAAATGACAAAATGACG 57.326 30.769 0.00 0.00 0.00 4.35
5195 7314 8.511321 AGCTATGTAAAAATGACAAAATGACGA 58.489 29.630 0.00 0.00 0.00 4.20
5196 7315 8.575454 GCTATGTAAAAATGACAAAATGACGAC 58.425 33.333 0.00 0.00 0.00 4.34
5197 7316 9.605955 CTATGTAAAAATGACAAAATGACGACA 57.394 29.630 0.00 0.00 0.00 4.35
5199 7318 8.500837 TGTAAAAATGACAAAATGACGACATC 57.499 30.769 0.00 0.00 35.50 3.06
5200 7319 8.349245 TGTAAAAATGACAAAATGACGACATCT 58.651 29.630 0.00 0.00 35.50 2.90
5201 7320 9.820229 GTAAAAATGACAAAATGACGACATCTA 57.180 29.630 0.00 0.00 35.50 1.98
5203 7322 9.743057 AAAAATGACAAAATGACGACATCTAAA 57.257 25.926 0.00 0.00 35.50 1.85
5204 7323 9.912634 AAAATGACAAAATGACGACATCTAAAT 57.087 25.926 0.00 0.00 35.50 1.40
5207 7326 8.771920 TGACAAAATGACGACATCTAAATAGT 57.228 30.769 0.00 0.00 35.50 2.12
5208 7327 8.655970 TGACAAAATGACGACATCTAAATAGTG 58.344 33.333 0.00 0.00 35.50 2.74
5209 7328 8.771920 ACAAAATGACGACATCTAAATAGTGA 57.228 30.769 0.00 0.00 35.50 3.41
5210 7329 9.214957 ACAAAATGACGACATCTAAATAGTGAA 57.785 29.630 0.00 0.00 35.50 3.18
5218 7337 9.197694 ACGACATCTAAATAGTGAATAAGATGC 57.802 33.333 9.43 3.40 39.56 3.91
5219 7338 9.196552 CGACATCTAAATAGTGAATAAGATGCA 57.803 33.333 9.43 0.00 39.56 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 238 0.396435 TCTCCTGCTCTTTTTCGGCA 59.604 50.000 0.00 0.00 34.66 5.69
236 244 3.906846 TCTCCTTCTTCTCCTGCTCTTTT 59.093 43.478 0.00 0.00 0.00 2.27
239 247 2.917713 TCTCCTTCTTCTCCTGCTCT 57.082 50.000 0.00 0.00 0.00 4.09
249 257 5.988287 CTCCTTTAGCTCATTCTCCTTCTT 58.012 41.667 0.00 0.00 0.00 2.52
266 280 0.178861 TCCCCTTCTCCTGCTCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
271 285 1.284313 CTTCTTCCCCTTCTCCTGCT 58.716 55.000 0.00 0.00 0.00 4.24
272 286 0.254462 CCTTCTTCCCCTTCTCCTGC 59.746 60.000 0.00 0.00 0.00 4.85
273 287 1.836802 CTCCTTCTTCCCCTTCTCCTG 59.163 57.143 0.00 0.00 0.00 3.86
274 288 1.903955 GCTCCTTCTTCCCCTTCTCCT 60.904 57.143 0.00 0.00 0.00 3.69
275 289 0.544223 GCTCCTTCTTCCCCTTCTCC 59.456 60.000 0.00 0.00 0.00 3.71
276 290 1.280457 TGCTCCTTCTTCCCCTTCTC 58.720 55.000 0.00 0.00 0.00 2.87
277 291 1.747444 TTGCTCCTTCTTCCCCTTCT 58.253 50.000 0.00 0.00 0.00 2.85
278 292 2.586648 TTTGCTCCTTCTTCCCCTTC 57.413 50.000 0.00 0.00 0.00 3.46
279 293 2.491640 CCTTTTGCTCCTTCTTCCCCTT 60.492 50.000 0.00 0.00 0.00 3.95
280 294 1.076187 CCTTTTGCTCCTTCTTCCCCT 59.924 52.381 0.00 0.00 0.00 4.79
281 295 1.075536 TCCTTTTGCTCCTTCTTCCCC 59.924 52.381 0.00 0.00 0.00 4.81
282 296 2.441410 CTCCTTTTGCTCCTTCTTCCC 58.559 52.381 0.00 0.00 0.00 3.97
283 297 1.815613 GCTCCTTTTGCTCCTTCTTCC 59.184 52.381 0.00 0.00 0.00 3.46
284 298 2.487372 CTGCTCCTTTTGCTCCTTCTTC 59.513 50.000 0.00 0.00 0.00 2.87
285 299 2.512705 CTGCTCCTTTTGCTCCTTCTT 58.487 47.619 0.00 0.00 0.00 2.52
286 300 1.271817 CCTGCTCCTTTTGCTCCTTCT 60.272 52.381 0.00 0.00 0.00 2.85
287 301 1.172175 CCTGCTCCTTTTGCTCCTTC 58.828 55.000 0.00 0.00 0.00 3.46
288 302 0.773644 TCCTGCTCCTTTTGCTCCTT 59.226 50.000 0.00 0.00 0.00 3.36
289 303 0.327591 CTCCTGCTCCTTTTGCTCCT 59.672 55.000 0.00 0.00 0.00 3.69
290 304 0.679321 CCTCCTGCTCCTTTTGCTCC 60.679 60.000 0.00 0.00 0.00 4.70
291 305 0.326264 TCCTCCTGCTCCTTTTGCTC 59.674 55.000 0.00 0.00 0.00 4.26
292 306 0.327591 CTCCTCCTGCTCCTTTTGCT 59.672 55.000 0.00 0.00 0.00 3.91
293 307 0.679321 CCTCCTCCTGCTCCTTTTGC 60.679 60.000 0.00 0.00 0.00 3.68
294 308 0.034670 CCCTCCTCCTGCTCCTTTTG 60.035 60.000 0.00 0.00 0.00 2.44
295 309 1.210885 CCCCTCCTCCTGCTCCTTTT 61.211 60.000 0.00 0.00 0.00 2.27
296 310 1.617839 CCCCTCCTCCTGCTCCTTT 60.618 63.158 0.00 0.00 0.00 3.11
297 311 2.041928 CCCCTCCTCCTGCTCCTT 59.958 66.667 0.00 0.00 0.00 3.36
308 322 1.208706 CCTTCTCCTTCTTCCCCTCC 58.791 60.000 0.00 0.00 0.00 4.30
326 364 1.289530 TCCTTCTCCTCCTCTTCCTCC 59.710 57.143 0.00 0.00 0.00 4.30
345 383 2.418609 GCTCTGCCTTCTTCTCCTTCTC 60.419 54.545 0.00 0.00 0.00 2.87
346 384 1.554617 GCTCTGCCTTCTTCTCCTTCT 59.445 52.381 0.00 0.00 0.00 2.85
347 385 1.406751 GGCTCTGCCTTCTTCTCCTTC 60.407 57.143 0.73 0.00 46.69 3.46
348 386 0.617935 GGCTCTGCCTTCTTCTCCTT 59.382 55.000 0.73 0.00 46.69 3.36
349 387 2.295904 GGCTCTGCCTTCTTCTCCT 58.704 57.895 0.73 0.00 46.69 3.69
350 388 4.952704 GGCTCTGCCTTCTTCTCC 57.047 61.111 0.73 0.00 46.69 3.71
383 421 4.767255 CACAGGCTCTCCCACGCC 62.767 72.222 0.00 0.00 46.65 5.68
483 582 1.335182 AGACAGAATCGCGACGATCAT 59.665 47.619 12.93 2.90 46.30 2.45
503 602 1.860326 CATGCATCACTACGAATCGCA 59.140 47.619 1.15 0.00 33.49 5.10
550 654 6.515272 AACACCAATAATTTGAGCCTACTG 57.485 37.500 0.00 0.00 34.60 2.74
603 708 9.612620 GAACCATGTTTTCTTCAACTGTAATAG 57.387 33.333 0.00 0.00 0.00 1.73
636 743 0.830648 CGGGAAATAGCCACTCCTGA 59.169 55.000 0.00 0.00 37.77 3.86
638 745 0.326238 TCCGGGAAATAGCCACTCCT 60.326 55.000 0.00 0.00 0.00 3.69
644 751 3.945981 TTTTTGTTCCGGGAAATAGCC 57.054 42.857 11.82 0.00 0.00 3.93
669 777 0.371645 GCTGAATTTCCTGAGCGACG 59.628 55.000 0.00 0.00 0.00 5.12
738 846 7.811759 CGTTTTCGATGTACCTACAGGTCTTG 61.812 46.154 3.65 0.00 45.81 3.02
739 847 5.848880 CGTTTTCGATGTACCTACAGGTCTT 60.849 44.000 3.65 0.00 45.81 3.01
740 848 4.380233 CGTTTTCGATGTACCTACAGGTCT 60.380 45.833 3.65 0.00 45.81 3.85
768 879 1.001158 GAAAGATAGGACGCCTCCTCG 60.001 57.143 7.61 0.00 44.59 4.63
773 884 1.490574 AGCTGAAAGATAGGACGCCT 58.509 50.000 3.87 3.87 34.07 5.52
781 909 4.464951 TGGACCGAAACTAGCTGAAAGATA 59.535 41.667 0.00 0.00 34.07 1.98
792 920 2.472816 GACACGTTTGGACCGAAACTA 58.527 47.619 13.91 0.00 34.26 2.24
795 923 1.764180 GCGACACGTTTGGACCGAAA 61.764 55.000 0.00 0.00 0.00 3.46
797 925 2.632136 AAGCGACACGTTTGGACCGA 62.632 55.000 0.00 0.00 0.00 4.69
800 928 0.041576 GGAAAGCGACACGTTTGGAC 60.042 55.000 0.00 0.00 29.69 4.02
809 937 4.361253 GCTCACTGGAAAGCGACA 57.639 55.556 0.00 0.00 0.00 4.35
816 944 1.112916 TCACCACTCGCTCACTGGAA 61.113 55.000 0.00 0.00 0.00 3.53
820 948 0.900182 TGGATCACCACTCGCTCACT 60.900 55.000 0.00 0.00 41.77 3.41
956 1098 2.357034 GCAGGAAGGAACGTGCGA 60.357 61.111 0.00 0.00 40.70 5.10
961 1103 1.801913 CTCGACGCAGGAAGGAACG 60.802 63.158 0.00 0.00 0.00 3.95
964 1106 2.341101 GGACTCGACGCAGGAAGGA 61.341 63.158 0.00 0.00 0.00 3.36
968 1110 1.461091 AACAAGGACTCGACGCAGGA 61.461 55.000 0.00 0.00 0.00 3.86
970 1112 1.009389 GGAACAAGGACTCGACGCAG 61.009 60.000 0.00 0.00 0.00 5.18
978 1127 5.373812 TCAAGAAGAAAGGAACAAGGACT 57.626 39.130 0.00 0.00 0.00 3.85
989 1138 2.359900 CCCCGTCCATCAAGAAGAAAG 58.640 52.381 0.00 0.00 0.00 2.62
992 1141 1.910580 GCCCCCGTCCATCAAGAAGA 61.911 60.000 0.00 0.00 0.00 2.87
993 1142 1.452108 GCCCCCGTCCATCAAGAAG 60.452 63.158 0.00 0.00 0.00 2.85
1088 1246 4.240103 CATCCGCCGCCTCATGGA 62.240 66.667 0.00 0.00 34.57 3.41
1110 1268 2.049802 TTCTTGTCGCCGTCGTCC 60.050 61.111 0.00 0.00 36.96 4.79
1158 1319 3.271014 CGGAAGACGTCGAGGGAA 58.729 61.111 10.46 0.00 37.93 3.97
1202 1363 2.372504 TGAGGAATTAAACACCCGTGGA 59.627 45.455 0.00 0.00 34.19 4.02
1203 1364 2.486592 GTGAGGAATTAAACACCCGTGG 59.513 50.000 0.00 0.00 34.19 4.94
1204 1365 2.486592 GGTGAGGAATTAAACACCCGTG 59.513 50.000 13.20 0.00 44.59 4.94
1205 1366 2.786777 GGTGAGGAATTAAACACCCGT 58.213 47.619 13.20 0.00 44.59 5.28
1209 1370 4.394729 TCACTGGGTGAGGAATTAAACAC 58.605 43.478 0.00 0.00 37.67 3.32
1223 1412 2.811873 GCAGACATGAAACTCACTGGGT 60.812 50.000 0.00 0.00 0.00 4.51
1224 1413 1.808945 GCAGACATGAAACTCACTGGG 59.191 52.381 0.00 0.00 0.00 4.45
1228 1421 2.481952 GTCAGGCAGACATGAAACTCAC 59.518 50.000 5.03 0.00 46.77 3.51
1229 1422 2.771089 GTCAGGCAGACATGAAACTCA 58.229 47.619 5.03 0.00 46.77 3.41
1249 1442 1.333619 CGAACACAGTTGGAACTTGGG 59.666 52.381 0.00 0.00 37.08 4.12
1262 1458 0.915904 GACACGAACGAACGAACACA 59.084 50.000 11.97 0.00 37.03 3.72
1266 1462 1.533988 CGCAGACACGAACGAACGAA 61.534 55.000 11.97 0.00 37.03 3.85
1267 1463 2.007114 CGCAGACACGAACGAACGA 61.007 57.895 11.97 0.00 37.03 3.85
1268 1464 2.459904 CGCAGACACGAACGAACG 59.540 61.111 0.14 0.00 39.31 3.95
1282 1478 3.444014 TATCATCAGCTGCGGCGCA 62.444 57.895 34.06 34.06 44.37 6.09
1284 1480 1.300465 AGTATCATCAGCTGCGGCG 60.300 57.895 12.87 0.51 44.37 6.46
1287 1483 1.215244 CACCAGTATCATCAGCTGCG 58.785 55.000 9.47 2.31 0.00 5.18
1417 1613 4.899243 GGGACCTTGAGGGAGAGT 57.101 61.111 1.54 0.00 40.27 3.24
1432 1628 1.560146 GAAGTAGGGTTCAGAAGGGGG 59.440 57.143 0.00 0.00 0.00 5.40
1434 1630 2.552367 AGGAAGTAGGGTTCAGAAGGG 58.448 52.381 0.00 0.00 0.00 3.95
1437 1633 3.870559 AGGAAGGAAGTAGGGTTCAGAA 58.129 45.455 0.00 0.00 0.00 3.02
1439 1635 3.328050 ACAAGGAAGGAAGTAGGGTTCAG 59.672 47.826 0.00 0.00 0.00 3.02
1440 1636 3.323775 ACAAGGAAGGAAGTAGGGTTCA 58.676 45.455 0.00 0.00 0.00 3.18
1441 1637 3.307550 GGACAAGGAAGGAAGTAGGGTTC 60.308 52.174 0.00 0.00 0.00 3.62
1442 1638 2.643304 GGACAAGGAAGGAAGTAGGGTT 59.357 50.000 0.00 0.00 0.00 4.11
1445 1641 2.907042 ACAGGACAAGGAAGGAAGTAGG 59.093 50.000 0.00 0.00 0.00 3.18
1448 1644 2.370189 CTGACAGGACAAGGAAGGAAGT 59.630 50.000 0.00 0.00 0.00 3.01
1449 1645 2.634940 TCTGACAGGACAAGGAAGGAAG 59.365 50.000 1.81 0.00 0.00 3.46
1450 1646 2.368875 GTCTGACAGGACAAGGAAGGAA 59.631 50.000 1.81 0.00 36.35 3.36
1452 1661 1.974236 AGTCTGACAGGACAAGGAAGG 59.026 52.381 10.88 0.00 38.57 3.46
1454 1663 1.070758 GCAGTCTGACAGGACAAGGAA 59.929 52.381 10.88 0.00 38.57 3.36
1457 1666 1.069823 ACTGCAGTCTGACAGGACAAG 59.930 52.381 15.25 1.64 38.25 3.16
1458 1667 1.123077 ACTGCAGTCTGACAGGACAA 58.877 50.000 15.25 0.00 38.25 3.18
1462 1674 1.143305 CGAAACTGCAGTCTGACAGG 58.857 55.000 21.95 1.80 38.25 4.00
1463 1675 1.789464 GACGAAACTGCAGTCTGACAG 59.211 52.381 21.95 17.50 39.86 3.51
1465 1677 1.523095 GTGACGAAACTGCAGTCTGAC 59.477 52.381 21.95 13.25 36.01 3.51
1477 1742 0.646381 CAACGAACGGTGTGACGAAA 59.354 50.000 3.99 0.00 37.61 3.46
1485 1750 2.362668 GTTGAGAACAACGAACGGTG 57.637 50.000 10.72 10.72 45.06 4.94
1512 1809 4.202326 TGCACGTTTGTTTTATTCGTACG 58.798 39.130 9.53 9.53 33.49 3.67
1513 1810 5.433855 TCTGCACGTTTGTTTTATTCGTAC 58.566 37.500 0.00 0.00 33.49 3.67
1514 1811 5.462729 TCTCTGCACGTTTGTTTTATTCGTA 59.537 36.000 0.00 0.00 33.49 3.43
1515 1812 4.271533 TCTCTGCACGTTTGTTTTATTCGT 59.728 37.500 0.00 0.00 35.12 3.85
1516 1813 4.768145 TCTCTGCACGTTTGTTTTATTCG 58.232 39.130 0.00 0.00 0.00 3.34
1517 1814 7.148967 GGAATTCTCTGCACGTTTGTTTTATTC 60.149 37.037 5.23 0.00 0.00 1.75
1518 1815 6.640907 GGAATTCTCTGCACGTTTGTTTTATT 59.359 34.615 5.23 0.00 0.00 1.40
1519 1816 6.149633 GGAATTCTCTGCACGTTTGTTTTAT 58.850 36.000 5.23 0.00 0.00 1.40
1520 1817 5.066634 TGGAATTCTCTGCACGTTTGTTTTA 59.933 36.000 5.23 0.00 0.00 1.52
1521 1818 4.142271 TGGAATTCTCTGCACGTTTGTTTT 60.142 37.500 5.23 0.00 0.00 2.43
1522 1819 3.380004 TGGAATTCTCTGCACGTTTGTTT 59.620 39.130 5.23 0.00 0.00 2.83
1568 1865 3.437049 GCTTCAGTGTTCTTATGACCACC 59.563 47.826 3.12 0.00 36.44 4.61
1621 1918 3.753272 TGTTCTCCATGCTTCTTGTAAGC 59.247 43.478 2.81 2.81 43.29 3.09
1624 1921 4.040339 TCAGTGTTCTCCATGCTTCTTGTA 59.960 41.667 0.00 0.00 0.00 2.41
1626 1923 3.405831 TCAGTGTTCTCCATGCTTCTTG 58.594 45.455 0.00 0.00 0.00 3.02
1629 1926 3.622163 CAGATCAGTGTTCTCCATGCTTC 59.378 47.826 0.48 0.00 0.00 3.86
1630 1927 3.008813 ACAGATCAGTGTTCTCCATGCTT 59.991 43.478 0.48 0.00 0.00 3.91
1632 1929 2.983229 ACAGATCAGTGTTCTCCATGC 58.017 47.619 0.48 0.00 0.00 4.06
1633 1930 5.934043 TGTAAACAGATCAGTGTTCTCCATG 59.066 40.000 0.48 0.00 39.82 3.66
1634 1931 5.934625 GTGTAAACAGATCAGTGTTCTCCAT 59.065 40.000 0.48 0.00 39.82 3.41
1636 1933 4.691216 GGTGTAAACAGATCAGTGTTCTCC 59.309 45.833 0.48 0.00 39.82 3.71
1637 1934 5.297547 TGGTGTAAACAGATCAGTGTTCTC 58.702 41.667 0.48 0.03 39.82 2.87
1638 1935 5.290493 TGGTGTAAACAGATCAGTGTTCT 57.710 39.130 1.21 0.00 39.82 3.01
1639 1936 6.560253 ATTGGTGTAAACAGATCAGTGTTC 57.440 37.500 1.21 0.00 39.82 3.18
1640 1937 6.959639 AATTGGTGTAAACAGATCAGTGTT 57.040 33.333 0.00 0.00 42.62 3.32
1641 1938 6.149474 GCTAATTGGTGTAAACAGATCAGTGT 59.851 38.462 0.00 0.00 0.00 3.55
1642 1939 6.372659 AGCTAATTGGTGTAAACAGATCAGTG 59.627 38.462 0.00 0.00 0.00 3.66
1643 1940 6.476378 AGCTAATTGGTGTAAACAGATCAGT 58.524 36.000 0.00 0.00 0.00 3.41
1644 1941 6.992063 AGCTAATTGGTGTAAACAGATCAG 57.008 37.500 0.00 0.00 0.00 2.90
1645 1942 7.168219 AGAAGCTAATTGGTGTAAACAGATCA 58.832 34.615 0.00 0.00 0.00 2.92
1646 1943 7.617041 AGAAGCTAATTGGTGTAAACAGATC 57.383 36.000 0.00 0.00 0.00 2.75
1647 1944 9.515226 TTAAGAAGCTAATTGGTGTAAACAGAT 57.485 29.630 0.00 0.00 0.00 2.90
1648 1945 8.911918 TTAAGAAGCTAATTGGTGTAAACAGA 57.088 30.769 0.00 0.00 0.00 3.41
1649 1946 8.784043 ACTTAAGAAGCTAATTGGTGTAAACAG 58.216 33.333 10.09 0.00 0.00 3.16
1650 1947 8.685838 ACTTAAGAAGCTAATTGGTGTAAACA 57.314 30.769 10.09 0.00 0.00 2.83
1651 1948 9.000486 AGACTTAAGAAGCTAATTGGTGTAAAC 58.000 33.333 10.09 0.00 0.00 2.01
1652 1949 9.216117 GAGACTTAAGAAGCTAATTGGTGTAAA 57.784 33.333 10.09 0.00 0.00 2.01
1653 1950 8.594550 AGAGACTTAAGAAGCTAATTGGTGTAA 58.405 33.333 10.09 0.00 0.00 2.41
1654 1951 8.135382 AGAGACTTAAGAAGCTAATTGGTGTA 57.865 34.615 10.09 0.00 0.00 2.90
1657 1954 7.038658 ACAGAGAGACTTAAGAAGCTAATTGGT 60.039 37.037 10.09 0.00 0.00 3.67
1676 1973 6.257411 CACAGAGGCATTTGTATAACAGAGAG 59.743 42.308 0.00 0.00 0.00 3.20
1679 1976 5.804639 ACACAGAGGCATTTGTATAACAGA 58.195 37.500 0.00 0.00 0.00 3.41
1687 1984 3.446873 TGTCAAAACACAGAGGCATTTGT 59.553 39.130 0.00 0.00 33.76 2.83
1688 1985 4.044336 TGTCAAAACACAGAGGCATTTG 57.956 40.909 0.00 0.00 33.43 2.32
1703 2000 1.495584 GCTTCGCGACCACTGTCAAA 61.496 55.000 9.15 0.00 41.85 2.69
1705 2002 2.355837 GCTTCGCGACCACTGTCA 60.356 61.111 9.15 0.00 41.85 3.58
1728 2026 1.511613 TCCTCTTTGCAGATAGGGGG 58.488 55.000 8.59 0.00 32.57 5.40
1729 2027 3.652057 TTTCCTCTTTGCAGATAGGGG 57.348 47.619 8.59 6.93 33.01 4.79
1730 2028 5.444176 AGAATTTCCTCTTTGCAGATAGGG 58.556 41.667 8.59 0.00 0.00 3.53
1731 2029 7.554118 TGTTAGAATTTCCTCTTTGCAGATAGG 59.446 37.037 2.45 2.45 0.00 2.57
1732 2030 8.394121 GTGTTAGAATTTCCTCTTTGCAGATAG 58.606 37.037 0.00 0.00 0.00 2.08
1733 2031 7.882791 TGTGTTAGAATTTCCTCTTTGCAGATA 59.117 33.333 0.00 0.00 0.00 1.98
1734 2032 6.716628 TGTGTTAGAATTTCCTCTTTGCAGAT 59.283 34.615 0.00 0.00 0.00 2.90
1786 2110 2.269241 GTGGGAGTAGCCACCTGC 59.731 66.667 0.00 0.00 38.95 4.85
1803 2127 2.376808 AAGTCAGTTCATCTGGAGCG 57.623 50.000 0.00 0.00 43.76 5.03
1818 2142 4.937620 TGCTTCATGTCAACTCCATAAGTC 59.062 41.667 0.00 0.00 37.17 3.01
1821 2145 4.650734 TGTGCTTCATGTCAACTCCATAA 58.349 39.130 0.00 0.00 0.00 1.90
1846 2170 2.537560 GGAGAATGCCGCACCATCG 61.538 63.158 0.00 0.00 0.00 3.84
1854 2178 1.227263 CGGTACCTGGAGAATGCCG 60.227 63.158 10.90 0.00 0.00 5.69
1857 2181 1.191535 TGTCCGGTACCTGGAGAATG 58.808 55.000 21.17 0.00 35.82 2.67
1860 2184 0.178955 TGTTGTCCGGTACCTGGAGA 60.179 55.000 21.17 18.26 35.82 3.71
1872 2196 4.772886 ATAGGGGAAGTATGTGTTGTCC 57.227 45.455 0.00 0.00 0.00 4.02
1876 2200 9.220906 TCAAGTAATATAGGGGAAGTATGTGTT 57.779 33.333 0.00 0.00 0.00 3.32
1918 2242 8.826710 CAAAGATAAAATCACTCGCTGGTAATA 58.173 33.333 0.00 0.00 0.00 0.98
1919 2243 7.679638 GCAAAGATAAAATCACTCGCTGGTAAT 60.680 37.037 0.00 0.00 0.00 1.89
1920 2244 6.403200 GCAAAGATAAAATCACTCGCTGGTAA 60.403 38.462 0.00 0.00 0.00 2.85
1927 2251 7.746929 AGAAGAAGCAAAGATAAAATCACTCG 58.253 34.615 0.00 0.00 0.00 4.18
1938 2262 5.495926 TCCTCTGAAGAAGAAGCAAAGAT 57.504 39.130 0.00 0.00 33.37 2.40
1945 2269 3.054508 AGGGCAATCCTCTGAAGAAGAAG 60.055 47.826 0.00 0.00 44.06 2.85
1946 2270 2.915604 AGGGCAATCCTCTGAAGAAGAA 59.084 45.455 0.00 0.00 44.06 2.52
1947 2271 2.555664 AGGGCAATCCTCTGAAGAAGA 58.444 47.619 0.00 0.00 44.06 2.87
2010 2334 0.904865 ACTGATCCTGAACCCTCGCA 60.905 55.000 0.00 0.00 0.00 5.10
2059 2383 7.527196 GCATATATACCACTGGGACAAGTACAT 60.527 40.741 0.00 0.00 38.70 2.29
2065 2389 5.841267 ATGCATATATACCACTGGGACAA 57.159 39.130 0.00 0.00 38.70 3.18
2073 2397 7.366847 AGGTCTGGATATGCATATATACCAC 57.633 40.000 25.70 16.54 31.11 4.16
2090 2414 7.636150 ATTCAGATGACATAAAAAGGTCTGG 57.364 36.000 0.00 0.00 35.11 3.86
2093 2417 8.514594 TCACAATTCAGATGACATAAAAAGGTC 58.485 33.333 0.00 0.00 34.63 3.85
2095 2419 9.350357 CTTCACAATTCAGATGACATAAAAAGG 57.650 33.333 0.00 0.00 0.00 3.11
2096 2420 8.857216 GCTTCACAATTCAGATGACATAAAAAG 58.143 33.333 0.00 0.00 0.00 2.27
2097 2421 8.358895 TGCTTCACAATTCAGATGACATAAAAA 58.641 29.630 0.00 0.00 0.00 1.94
2098 2422 7.884257 TGCTTCACAATTCAGATGACATAAAA 58.116 30.769 0.00 0.00 0.00 1.52
2099 2423 7.451501 TGCTTCACAATTCAGATGACATAAA 57.548 32.000 0.00 0.00 0.00 1.40
2100 2424 7.634671 ATGCTTCACAATTCAGATGACATAA 57.365 32.000 0.00 0.00 0.00 1.90
2101 2425 7.477494 CAATGCTTCACAATTCAGATGACATA 58.523 34.615 0.00 0.00 0.00 2.29
2147 2478 2.223829 CCTTGTAGATACACAGAGGCCG 60.224 54.545 0.00 0.00 35.64 6.13
2151 2482 6.036517 GCAACAATCCTTGTAGATACACAGAG 59.963 42.308 0.00 0.00 44.59 3.35
2186 2517 6.660949 AGACAAGGGACAAATAGATCAAAAGG 59.339 38.462 0.00 0.00 0.00 3.11
2189 2520 6.816640 CGTAGACAAGGGACAAATAGATCAAA 59.183 38.462 0.00 0.00 0.00 2.69
2190 2521 6.338146 CGTAGACAAGGGACAAATAGATCAA 58.662 40.000 0.00 0.00 0.00 2.57
2242 2573 1.875963 CTGTCCACATTTCGCACCC 59.124 57.895 0.00 0.00 0.00 4.61
2263 2594 7.341445 ACTGTTAAAACTTTGCCATAGTTCA 57.659 32.000 0.92 0.00 34.88 3.18
2264 2595 9.341899 CATACTGTTAAAACTTTGCCATAGTTC 57.658 33.333 0.92 0.00 34.88 3.01
2300 2631 5.635417 AAGAAAGTAAAATGGCAGAGCTC 57.365 39.130 5.27 5.27 0.00 4.09
2336 2674 6.036083 ACGAGTAGTATGCAACATCAACAATC 59.964 38.462 0.00 0.00 0.00 2.67
2349 2687 2.527100 ACGCTCAAACGAGTAGTATGC 58.473 47.619 0.00 0.00 36.70 3.14
2399 2796 5.762045 TGCAAACTTTGACTCAGCTAATTC 58.238 37.500 5.65 0.00 0.00 2.17
2406 2803 7.840342 ACTATCTATGCAAACTTTGACTCAG 57.160 36.000 5.65 0.00 0.00 3.35
2455 2852 7.254050 GCGATATGCTTGCAAAATCATTTTGTA 60.254 33.333 21.35 15.78 45.04 2.41
2473 2870 2.641559 GCTTGCCCAGCGATATGC 59.358 61.111 0.00 0.00 46.98 3.14
2544 2941 7.028962 TGAGTTATACATTGCTGTTGAAATGC 58.971 34.615 0.00 0.00 41.79 3.56
2657 3095 5.504994 CGTACAGGTGCAAAACAATAACACT 60.505 40.000 0.00 0.00 0.00 3.55
2681 3122 9.567848 TTCAACTTTCACAAAACTACTTTGATC 57.432 29.630 4.32 0.00 46.35 2.92
2806 3247 0.107508 ACAGGTGATTGATGCCGAGG 60.108 55.000 0.00 0.00 0.00 4.63
2873 3314 5.290158 CAGGCATGAATGTTTTGTTATCTGC 59.710 40.000 0.00 0.00 0.00 4.26
2894 3335 7.492344 AGTTTGAAAATAACTGCAAAGAACAGG 59.508 33.333 0.00 0.00 39.55 4.00
3067 3513 2.762327 AGAAATCCCACCATTGACATGC 59.238 45.455 0.00 0.00 0.00 4.06
3109 3555 7.948357 ACTACAACACAGAACAGTGAACTATA 58.052 34.615 0.00 0.00 42.05 1.31
3110 3556 6.817184 ACTACAACACAGAACAGTGAACTAT 58.183 36.000 0.00 0.00 42.05 2.12
3112 3558 5.086104 ACTACAACACAGAACAGTGAACT 57.914 39.130 0.00 0.00 42.05 3.01
3113 3559 5.350365 TGAACTACAACACAGAACAGTGAAC 59.650 40.000 0.00 0.00 42.05 3.18
3114 3560 5.350365 GTGAACTACAACACAGAACAGTGAA 59.650 40.000 0.00 0.00 42.05 3.18
3116 3562 4.870426 AGTGAACTACAACACAGAACAGTG 59.130 41.667 0.00 0.00 44.93 3.66
3117 3563 4.870426 CAGTGAACTACAACACAGAACAGT 59.130 41.667 0.00 0.00 39.18 3.55
3118 3564 4.870426 ACAGTGAACTACAACACAGAACAG 59.130 41.667 0.00 0.00 39.18 3.16
3119 3565 4.827692 ACAGTGAACTACAACACAGAACA 58.172 39.130 0.00 0.00 39.18 3.18
3120 3566 5.350365 TCAACAGTGAACTACAACACAGAAC 59.650 40.000 0.00 0.00 39.18 3.01
3121 3567 5.350365 GTCAACAGTGAACTACAACACAGAA 59.650 40.000 0.00 0.00 39.18 3.02
3122 3568 4.868171 GTCAACAGTGAACTACAACACAGA 59.132 41.667 0.00 0.00 39.18 3.41
3123 3569 4.629634 TGTCAACAGTGAACTACAACACAG 59.370 41.667 0.00 0.00 39.18 3.66
3124 3570 4.390603 GTGTCAACAGTGAACTACAACACA 59.609 41.667 0.00 0.00 39.18 3.72
3125 3571 4.630069 AGTGTCAACAGTGAACTACAACAC 59.370 41.667 0.00 1.81 34.87 3.32
3126 3572 4.827692 AGTGTCAACAGTGAACTACAACA 58.172 39.130 0.00 0.00 34.87 3.33
3138 3584 9.520204 AATTTTATCAAAGAACAGTGTCAACAG 57.480 29.630 0.00 0.00 0.00 3.16
3153 3599 9.881529 GAAAATGAGCTGCAAAATTTTATCAAA 57.118 25.926 15.31 0.00 33.54 2.69
3161 3607 3.430895 CGCTGAAAATGAGCTGCAAAATT 59.569 39.130 1.02 0.00 34.03 1.82
3162 3608 2.991190 CGCTGAAAATGAGCTGCAAAAT 59.009 40.909 1.02 0.00 34.03 1.82
3186 3632 3.637998 ACGCCGATGATCGTACTTAAT 57.362 42.857 14.27 0.00 38.40 1.40
3287 3733 3.587951 TGTAGTCAGTCCCTACTCAGAGT 59.412 47.826 8.50 8.50 36.56 3.24
3290 3736 4.079970 TGTTGTAGTCAGTCCCTACTCAG 58.920 47.826 0.00 0.00 36.56 3.35
3291 3737 3.825014 GTGTTGTAGTCAGTCCCTACTCA 59.175 47.826 0.00 0.00 36.56 3.41
3292 3738 3.825014 TGTGTTGTAGTCAGTCCCTACTC 59.175 47.826 0.00 0.00 36.56 2.59
3293 3739 3.840991 TGTGTTGTAGTCAGTCCCTACT 58.159 45.455 0.00 0.00 36.56 2.57
3294 3740 4.803098 ATGTGTTGTAGTCAGTCCCTAC 57.197 45.455 0.00 0.00 36.23 3.18
3295 3741 6.629515 GCATTATGTGTTGTAGTCAGTCCCTA 60.630 42.308 0.00 0.00 0.00 3.53
3296 3742 5.734720 CATTATGTGTTGTAGTCAGTCCCT 58.265 41.667 0.00 0.00 0.00 4.20
3297 3743 4.332819 GCATTATGTGTTGTAGTCAGTCCC 59.667 45.833 0.00 0.00 0.00 4.46
3298 3744 5.063944 CAGCATTATGTGTTGTAGTCAGTCC 59.936 44.000 0.00 0.00 34.67 3.85
3299 3745 5.869344 TCAGCATTATGTGTTGTAGTCAGTC 59.131 40.000 0.00 0.00 39.73 3.51
3300 3746 5.793817 TCAGCATTATGTGTTGTAGTCAGT 58.206 37.500 0.00 0.00 39.73 3.41
3301 3747 6.915544 ATCAGCATTATGTGTTGTAGTCAG 57.084 37.500 0.00 0.00 39.73 3.51
3302 3748 6.654582 ACAATCAGCATTATGTGTTGTAGTCA 59.345 34.615 0.00 0.00 39.73 3.41
3303 3749 7.076842 ACAATCAGCATTATGTGTTGTAGTC 57.923 36.000 0.00 0.00 39.73 2.59
3304 3750 7.174772 TCAACAATCAGCATTATGTGTTGTAGT 59.825 33.333 18.46 0.17 43.86 2.73
3305 3751 7.482743 GTCAACAATCAGCATTATGTGTTGTAG 59.517 37.037 18.46 2.29 43.86 2.74
3306 3752 7.040823 TGTCAACAATCAGCATTATGTGTTGTA 60.041 33.333 18.46 10.71 43.86 2.41
3307 3753 6.151691 GTCAACAATCAGCATTATGTGTTGT 58.848 36.000 18.46 10.91 43.86 3.32
3308 3754 6.151004 TGTCAACAATCAGCATTATGTGTTG 58.849 36.000 15.15 15.15 44.47 3.33
3309 3755 6.330004 TGTCAACAATCAGCATTATGTGTT 57.670 33.333 0.00 0.00 0.00 3.32
3310 3756 5.963176 TGTCAACAATCAGCATTATGTGT 57.037 34.783 0.00 0.00 0.00 3.72
3311 3757 6.327154 ACATGTCAACAATCAGCATTATGTG 58.673 36.000 0.00 0.00 0.00 3.21
3312 3758 6.519679 ACATGTCAACAATCAGCATTATGT 57.480 33.333 0.00 0.00 0.00 2.29
3313 3759 7.821595 AAACATGTCAACAATCAGCATTATG 57.178 32.000 0.00 0.00 0.00 1.90
3314 3760 9.740239 GATAAACATGTCAACAATCAGCATTAT 57.260 29.630 0.00 0.00 0.00 1.28
3315 3761 8.738106 TGATAAACATGTCAACAATCAGCATTA 58.262 29.630 0.00 0.00 0.00 1.90
3316 3762 7.604549 TGATAAACATGTCAACAATCAGCATT 58.395 30.769 0.00 0.00 0.00 3.56
3317 3763 7.160547 TGATAAACATGTCAACAATCAGCAT 57.839 32.000 0.00 0.00 0.00 3.79
3318 3764 6.572167 TGATAAACATGTCAACAATCAGCA 57.428 33.333 0.00 0.00 0.00 4.41
3319 3765 7.221452 GGAATGATAAACATGTCAACAATCAGC 59.779 37.037 0.00 2.02 39.39 4.26
3320 3766 8.464404 AGGAATGATAAACATGTCAACAATCAG 58.536 33.333 0.00 0.00 39.39 2.90
3321 3767 8.245491 CAGGAATGATAAACATGTCAACAATCA 58.755 33.333 0.00 5.04 39.39 2.57
3340 3786 4.083110 ACTCTGAAATTTCACGCAGGAATG 60.083 41.667 16.91 4.55 32.90 2.67
3341 3787 4.074970 ACTCTGAAATTTCACGCAGGAAT 58.925 39.130 16.91 0.00 32.90 3.01
3349 3795 7.201679 CCTGTCCATATGACTCTGAAATTTCAC 60.202 40.741 16.91 8.04 44.75 3.18
3454 3900 8.267620 TGATGAATGTGTATTTTGTACTCTGG 57.732 34.615 0.00 0.00 0.00 3.86
3457 3903 8.492673 TCCTGATGAATGTGTATTTTGTACTC 57.507 34.615 0.00 0.00 0.00 2.59
3732 4191 7.031975 GTCATGTGGAGGATTTGAAAATTCTC 58.968 38.462 13.59 13.59 46.06 2.87
3734 4193 6.690530 TGTCATGTGGAGGATTTGAAAATTC 58.309 36.000 0.00 0.00 0.00 2.17
3737 4196 6.295236 GGAATGTCATGTGGAGGATTTGAAAA 60.295 38.462 0.00 0.00 0.00 2.29
3738 4197 5.185635 GGAATGTCATGTGGAGGATTTGAAA 59.814 40.000 0.00 0.00 0.00 2.69
3739 4198 4.706476 GGAATGTCATGTGGAGGATTTGAA 59.294 41.667 0.00 0.00 0.00 2.69
3740 4199 4.263860 TGGAATGTCATGTGGAGGATTTGA 60.264 41.667 0.00 0.00 0.00 2.69
3741 4200 4.018490 TGGAATGTCATGTGGAGGATTTG 58.982 43.478 0.00 0.00 0.00 2.32
3752 4242 3.882444 ACTGGACTCATGGAATGTCATG 58.118 45.455 0.00 0.00 46.80 3.07
3772 4262 6.445267 GATCACATACACTCATGATCGAAC 57.555 41.667 0.00 0.00 38.45 3.95
3812 4302 0.882484 TTGCCGTCGACAATGCTCAA 60.882 50.000 17.16 6.69 0.00 3.02
3820 4310 0.306228 CAACAATGTTGCCGTCGACA 59.694 50.000 17.16 0.00 40.65 4.35
3828 4318 2.540931 CAGCAGGTTTCAACAATGTTGC 59.459 45.455 20.34 8.45 0.00 4.17
3847 4337 2.311854 ATCCACCTGGGGAAGCCAG 61.312 63.158 0.00 0.00 41.12 4.85
3862 4352 2.887568 CGCAGGCTCACGACATCC 60.888 66.667 0.22 0.00 0.00 3.51
3989 4479 2.878406 CAGTTACCAGTGTGTTCTTGGG 59.122 50.000 0.00 0.00 0.00 4.12
3994 4484 4.945246 TCTTCTCAGTTACCAGTGTGTTC 58.055 43.478 0.00 0.00 0.00 3.18
4011 4501 2.166664 GTCGATGCAGGTAGGTTCTTCT 59.833 50.000 0.00 0.00 0.00 2.85
4012 4502 2.541556 GTCGATGCAGGTAGGTTCTTC 58.458 52.381 0.00 0.00 0.00 2.87
4050 4545 2.061773 CGACAGAATTTCTCAGCGTGT 58.938 47.619 0.00 0.00 0.00 4.49
4070 4571 1.244019 CCCAGTAAACCTGCAGTGGC 61.244 60.000 13.81 0.00 40.06 5.01
4110 4611 3.314331 CTCCGAGTGCCACACCCT 61.314 66.667 0.00 0.00 34.49 4.34
4227 4728 2.060383 CCGATGTCCTCCTGGCTGA 61.060 63.158 0.00 0.00 0.00 4.26
4289 4790 7.426929 AGTTTCTTGTCATCTTACACACATC 57.573 36.000 0.00 0.00 0.00 3.06
4302 4803 9.613428 TCAATCTTTTCTTCTAGTTTCTTGTCA 57.387 29.630 0.00 0.00 0.00 3.58
4313 4814 6.652481 CAGTGAGCCTTCAATCTTTTCTTCTA 59.348 38.462 0.00 0.00 34.49 2.10
4348 4849 0.108662 TGTGCTCTACTCGCCACATG 60.109 55.000 0.00 0.00 0.00 3.21
4359 4860 1.342076 CCCTCTGGTAGGTGTGCTCTA 60.342 57.143 0.00 0.00 44.90 2.43
4376 4883 2.192263 GACTTTGATCTCCCACTCCCT 58.808 52.381 0.00 0.00 0.00 4.20
4399 4906 4.712051 ATAGCAAGATAATGGGCAGTCA 57.288 40.909 0.00 0.00 0.00 3.41
4412 4919 8.991243 AAATGTACGTACTTGTTATAGCAAGA 57.009 30.769 29.33 14.24 46.34 3.02
4441 5035 9.285770 GATTTAACCGACAACTTATCATTTTCC 57.714 33.333 0.00 0.00 0.00 3.13
4463 5057 2.932187 GCGCCCTTTCAGCAAATGATTT 60.932 45.455 0.00 0.00 37.89 2.17
4465 5059 0.174162 GCGCCCTTTCAGCAAATGAT 59.826 50.000 0.00 0.00 37.89 2.45
4503 5097 4.033776 TCCCGCTTCTGCTTGGGG 62.034 66.667 0.00 0.00 39.42 4.96
4579 5173 4.707448 CCATAGTCCCATAGGCTACACTAG 59.293 50.000 0.00 0.00 0.00 2.57
4670 6788 8.609483 ACTGTAGATAATCATAAGCCAATGGAT 58.391 33.333 2.05 0.00 0.00 3.41
4677 6795 7.978975 GGATCAGACTGTAGATAATCATAAGCC 59.021 40.741 1.59 0.00 0.00 4.35
4687 6805 6.667848 TGGAAAGTTGGATCAGACTGTAGATA 59.332 38.462 1.59 0.00 0.00 1.98
4691 6809 4.838423 TCTGGAAAGTTGGATCAGACTGTA 59.162 41.667 1.59 0.00 30.58 2.74
4738 6856 4.013267 AGATGGCTTACTACATGCATCC 57.987 45.455 0.00 0.00 0.00 3.51
4744 6862 8.680903 CAGAAAATCAAAGATGGCTTACTACAT 58.319 33.333 0.00 0.00 32.98 2.29
4782 6900 0.615850 GCCTAACAGTCCTCTGCCTT 59.384 55.000 0.00 0.00 44.77 4.35
4808 6926 1.338389 GCTGGCATTGGATTTGCTTGT 60.338 47.619 0.00 0.00 40.03 3.16
4836 6954 2.544726 GCTTGCTAGCAACGGAAGT 58.455 52.632 26.06 0.00 46.95 3.01
4870 6988 1.027357 AAGCATGATGGCGTGATTCC 58.973 50.000 0.00 0.00 34.79 3.01
4880 6998 8.605746 CACAAAAATATGGGTAAAAGCATGATG 58.394 33.333 0.00 0.00 0.00 3.07
4966 7085 4.716784 AGGCCAAGACAGTAGTATCATCAA 59.283 41.667 5.01 0.00 0.00 2.57
4982 7101 1.756538 ACACCACAAAAAGAGGCCAAG 59.243 47.619 5.01 0.00 0.00 3.61
5009 7128 2.930826 TGTTCCAAGAACCCACTCTC 57.069 50.000 5.09 0.00 0.00 3.20
5010 7129 2.224867 CCATGTTCCAAGAACCCACTCT 60.225 50.000 5.09 0.00 0.00 3.24
5011 7130 2.162681 CCATGTTCCAAGAACCCACTC 58.837 52.381 5.09 0.00 0.00 3.51
5012 7131 1.203050 CCCATGTTCCAAGAACCCACT 60.203 52.381 5.09 0.00 0.00 4.00
5013 7132 1.256812 CCCATGTTCCAAGAACCCAC 58.743 55.000 5.09 0.00 0.00 4.61
5014 7133 0.856982 ACCCATGTTCCAAGAACCCA 59.143 50.000 5.09 0.00 0.00 4.51
5015 7134 1.256812 CACCCATGTTCCAAGAACCC 58.743 55.000 5.09 0.00 0.00 4.11
5016 7135 0.603065 GCACCCATGTTCCAAGAACC 59.397 55.000 5.09 0.00 0.00 3.62
5017 7136 1.327303 TGCACCCATGTTCCAAGAAC 58.673 50.000 0.47 0.47 0.00 3.01
5018 7137 2.299582 CAATGCACCCATGTTCCAAGAA 59.700 45.455 0.00 0.00 0.00 2.52
5019 7138 1.894466 CAATGCACCCATGTTCCAAGA 59.106 47.619 0.00 0.00 0.00 3.02
5020 7139 1.066716 CCAATGCACCCATGTTCCAAG 60.067 52.381 0.00 0.00 0.00 3.61
5021 7140 0.975135 CCAATGCACCCATGTTCCAA 59.025 50.000 0.00 0.00 0.00 3.53
5022 7141 0.113972 TCCAATGCACCCATGTTCCA 59.886 50.000 0.00 0.00 0.00 3.53
5023 7142 0.819582 CTCCAATGCACCCATGTTCC 59.180 55.000 0.00 0.00 0.00 3.62
5024 7143 0.819582 CCTCCAATGCACCCATGTTC 59.180 55.000 0.00 0.00 0.00 3.18
5025 7144 0.409092 TCCTCCAATGCACCCATGTT 59.591 50.000 0.00 0.00 0.00 2.71
5026 7145 0.323725 GTCCTCCAATGCACCCATGT 60.324 55.000 0.00 0.00 0.00 3.21
5027 7146 0.033796 AGTCCTCCAATGCACCCATG 60.034 55.000 0.00 0.00 0.00 3.66
5028 7147 0.706433 AAGTCCTCCAATGCACCCAT 59.294 50.000 0.00 0.00 0.00 4.00
5029 7148 0.482446 AAAGTCCTCCAATGCACCCA 59.518 50.000 0.00 0.00 0.00 4.51
5030 7149 2.507407 TAAAGTCCTCCAATGCACCC 57.493 50.000 0.00 0.00 0.00 4.61
5031 7150 5.405935 AAAATAAAGTCCTCCAATGCACC 57.594 39.130 0.00 0.00 0.00 5.01
5105 7224 9.842775 GTGTAATATCCATCCATATGATCATGT 57.157 33.333 18.72 8.98 34.84 3.21
5106 7225 9.281371 GGTGTAATATCCATCCATATGATCATG 57.719 37.037 18.72 3.77 34.84 3.07
5107 7226 8.443176 GGGTGTAATATCCATCCATATGATCAT 58.557 37.037 13.81 13.81 34.84 2.45
5108 7227 7.418942 CGGGTGTAATATCCATCCATATGATCA 60.419 40.741 3.65 0.00 32.28 2.92
5109 7228 6.931281 CGGGTGTAATATCCATCCATATGATC 59.069 42.308 3.65 0.00 32.28 2.92
5110 7229 6.386927 ACGGGTGTAATATCCATCCATATGAT 59.613 38.462 3.65 0.00 32.28 2.45
5111 7230 5.724370 ACGGGTGTAATATCCATCCATATGA 59.276 40.000 3.65 0.00 32.28 2.15
5112 7231 5.817296 CACGGGTGTAATATCCATCCATATG 59.183 44.000 0.00 0.00 32.28 1.78
5113 7232 5.487488 ACACGGGTGTAATATCCATCCATAT 59.513 40.000 1.96 0.00 42.90 1.78
5114 7233 4.841813 ACACGGGTGTAATATCCATCCATA 59.158 41.667 1.96 0.00 42.90 2.74
5115 7234 3.650942 ACACGGGTGTAATATCCATCCAT 59.349 43.478 1.96 0.00 42.90 3.41
5116 7235 3.042682 ACACGGGTGTAATATCCATCCA 58.957 45.455 1.96 0.00 42.90 3.41
5117 7236 3.764237 ACACGGGTGTAATATCCATCC 57.236 47.619 1.96 0.00 42.90 3.51
5127 7246 3.139850 CACCAAACATTACACGGGTGTA 58.860 45.455 0.00 7.55 44.42 2.90
5128 7247 1.950909 CACCAAACATTACACGGGTGT 59.049 47.619 0.00 9.66 46.87 4.16
5129 7248 2.031508 GTCACCAAACATTACACGGGTG 60.032 50.000 0.00 0.00 45.45 4.61
5130 7249 2.223745 GTCACCAAACATTACACGGGT 58.776 47.619 0.00 0.00 0.00 5.28
5131 7250 1.195900 CGTCACCAAACATTACACGGG 59.804 52.381 0.00 0.00 0.00 5.28
5132 7251 2.136728 TCGTCACCAAACATTACACGG 58.863 47.619 0.00 0.00 0.00 4.94
5133 7252 3.863396 TTCGTCACCAAACATTACACG 57.137 42.857 0.00 0.00 0.00 4.49
5134 7253 7.357303 ACTTATTTCGTCACCAAACATTACAC 58.643 34.615 0.00 0.00 0.00 2.90
5135 7254 7.499321 ACTTATTTCGTCACCAAACATTACA 57.501 32.000 0.00 0.00 0.00 2.41
5136 7255 9.881529 TTTACTTATTTCGTCACCAAACATTAC 57.118 29.630 0.00 0.00 0.00 1.89
5137 7256 9.881529 GTTTACTTATTTCGTCACCAAACATTA 57.118 29.630 0.00 0.00 0.00 1.90
5138 7257 8.407064 TGTTTACTTATTTCGTCACCAAACATT 58.593 29.630 0.00 0.00 30.74 2.71
5139 7258 7.932335 TGTTTACTTATTTCGTCACCAAACAT 58.068 30.769 0.00 0.00 30.74 2.71
5140 7259 7.317842 TGTTTACTTATTTCGTCACCAAACA 57.682 32.000 0.00 0.00 32.63 2.83
5141 7260 7.858879 ACATGTTTACTTATTTCGTCACCAAAC 59.141 33.333 0.00 0.00 0.00 2.93
5142 7261 7.858382 CACATGTTTACTTATTTCGTCACCAAA 59.142 33.333 0.00 0.00 0.00 3.28
5143 7262 7.226918 TCACATGTTTACTTATTTCGTCACCAA 59.773 33.333 0.00 0.00 0.00 3.67
5144 7263 6.706716 TCACATGTTTACTTATTTCGTCACCA 59.293 34.615 0.00 0.00 0.00 4.17
5145 7264 7.124347 TCACATGTTTACTTATTTCGTCACC 57.876 36.000 0.00 0.00 0.00 4.02
5146 7265 6.736853 GCTCACATGTTTACTTATTTCGTCAC 59.263 38.462 0.00 0.00 0.00 3.67
5147 7266 6.649141 AGCTCACATGTTTACTTATTTCGTCA 59.351 34.615 0.00 0.00 0.00 4.35
5148 7267 7.061752 AGCTCACATGTTTACTTATTTCGTC 57.938 36.000 0.00 0.00 0.00 4.20
5149 7268 8.604035 CATAGCTCACATGTTTACTTATTTCGT 58.396 33.333 0.00 0.00 0.00 3.85
5150 7269 8.604035 ACATAGCTCACATGTTTACTTATTTCG 58.396 33.333 0.00 0.00 32.72 3.46
5160 7279 8.575589 TGTCATTTTTACATAGCTCACATGTTT 58.424 29.630 5.94 0.00 37.74 2.83
5161 7280 8.109705 TGTCATTTTTACATAGCTCACATGTT 57.890 30.769 5.94 0.00 37.74 2.71
5162 7281 7.686438 TGTCATTTTTACATAGCTCACATGT 57.314 32.000 5.92 5.92 39.82 3.21
5163 7282 8.969121 TTTGTCATTTTTACATAGCTCACATG 57.031 30.769 0.00 0.00 0.00 3.21
5165 7284 9.409312 CATTTTGTCATTTTTACATAGCTCACA 57.591 29.630 0.00 0.00 0.00 3.58
5166 7285 9.624697 TCATTTTGTCATTTTTACATAGCTCAC 57.375 29.630 0.00 0.00 0.00 3.51
5167 7286 9.624697 GTCATTTTGTCATTTTTACATAGCTCA 57.375 29.630 0.00 0.00 0.00 4.26
5168 7287 8.788813 CGTCATTTTGTCATTTTTACATAGCTC 58.211 33.333 0.00 0.00 0.00 4.09
5169 7288 8.511321 TCGTCATTTTGTCATTTTTACATAGCT 58.489 29.630 0.00 0.00 0.00 3.32
5170 7289 8.575454 GTCGTCATTTTGTCATTTTTACATAGC 58.425 33.333 0.00 0.00 0.00 2.97
5171 7290 9.605955 TGTCGTCATTTTGTCATTTTTACATAG 57.394 29.630 0.00 0.00 0.00 2.23
5173 7292 9.128107 GATGTCGTCATTTTGTCATTTTTACAT 57.872 29.630 0.00 0.00 34.06 2.29
5174 7293 8.349245 AGATGTCGTCATTTTGTCATTTTTACA 58.651 29.630 0.00 0.00 34.06 2.41
5175 7294 8.728088 AGATGTCGTCATTTTGTCATTTTTAC 57.272 30.769 0.00 0.00 34.06 2.01
5177 7296 9.743057 TTTAGATGTCGTCATTTTGTCATTTTT 57.257 25.926 0.00 0.00 34.06 1.94
5178 7297 9.912634 ATTTAGATGTCGTCATTTTGTCATTTT 57.087 25.926 0.00 0.00 34.06 1.82
5181 7300 9.383519 ACTATTTAGATGTCGTCATTTTGTCAT 57.616 29.630 0.00 0.00 34.06 3.06
5182 7301 8.655970 CACTATTTAGATGTCGTCATTTTGTCA 58.344 33.333 0.00 0.00 34.06 3.58
5183 7302 8.869897 TCACTATTTAGATGTCGTCATTTTGTC 58.130 33.333 0.00 0.00 34.06 3.18
5184 7303 8.771920 TCACTATTTAGATGTCGTCATTTTGT 57.228 30.769 0.00 0.00 34.06 2.83
5192 7311 9.197694 GCATCTTATTCACTATTTAGATGTCGT 57.802 33.333 0.00 0.00 40.50 4.34
5193 7312 9.196552 TGCATCTTATTCACTATTTAGATGTCG 57.803 33.333 0.00 0.00 40.50 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.