Multiple sequence alignment - TraesCS3D01G441000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G441000 chr3D 100.000 3163 0 0 1 3163 551347292 551344130 0.000000e+00 5842.0
1 TraesCS3D01G441000 chr3D 91.467 1418 54 28 593 1995 551429960 551431325 0.000000e+00 1886.0
2 TraesCS3D01G441000 chr3D 87.989 716 42 8 1993 2698 551432586 551433267 0.000000e+00 806.0
3 TraesCS3D01G441000 chr3D 95.965 347 13 1 2818 3163 510917804 510918150 2.130000e-156 562.0
4 TraesCS3D01G441000 chr3D 91.837 49 1 2 146 194 551347075 551347030 7.320000e-07 65.8
5 TraesCS3D01G441000 chr3D 91.837 49 1 2 218 263 551347147 551347099 7.320000e-07 65.8
6 TraesCS3D01G441000 chr3B 89.269 2134 109 57 593 2698 731096200 731094159 0.000000e+00 2562.0
7 TraesCS3D01G441000 chr3B 95.238 42 2 0 148 189 59467242 59467283 2.040000e-07 67.6
8 TraesCS3D01G441000 chr3A 91.405 1559 72 28 777 2316 688592222 688590707 0.000000e+00 2080.0
9 TraesCS3D01G441000 chr3A 90.526 285 27 0 2414 2698 688590610 688590326 8.280000e-101 377.0
10 TraesCS3D01G441000 chr3A 98.214 112 2 0 593 704 688592341 688592230 2.490000e-46 196.0
11 TraesCS3D01G441000 chr3A 97.087 103 1 2 2696 2796 619105075 619104973 4.190000e-39 172.0
12 TraesCS3D01G441000 chr3A 92.920 113 7 1 2302 2413 688590685 688590573 2.520000e-36 163.0
13 TraesCS3D01G441000 chr3A 76.172 256 46 12 2324 2578 688589588 688589347 1.540000e-23 121.0
14 TraesCS3D01G441000 chr4D 86.020 1731 140 47 1018 2698 7874061 7872383 0.000000e+00 1762.0
15 TraesCS3D01G441000 chr4D 97.327 449 10 2 146 592 373846852 373847300 0.000000e+00 761.0
16 TraesCS3D01G441000 chr4D 96.552 348 10 2 2818 3163 503386334 503386681 2.740000e-160 575.0
17 TraesCS3D01G441000 chr4D 95.690 348 13 2 2818 3163 20182238 20181891 2.760000e-155 558.0
18 TraesCS3D01G441000 chr4D 95.113 266 7 4 1 263 373846638 373846900 6.310000e-112 414.0
19 TraesCS3D01G441000 chr4D 77.933 571 54 44 593 1141 7874485 7873965 1.110000e-74 291.0
20 TraesCS3D01G441000 chr4D 97.273 110 3 0 2687 2796 345006499 345006608 1.500000e-43 187.0
21 TraesCS3D01G441000 chr4D 91.837 49 1 2 146 194 373846924 373846969 7.320000e-07 65.8
22 TraesCS3D01G441000 chr4A 83.075 2133 157 89 593 2611 595442480 595444522 0.000000e+00 1751.0
23 TraesCS3D01G441000 chr4B 85.670 1612 138 34 1138 2694 14054812 14056385 0.000000e+00 1611.0
24 TraesCS3D01G441000 chr4B 79.024 553 52 42 601 1114 14054225 14054752 1.420000e-83 320.0
25 TraesCS3D01G441000 chr7A 82.379 891 107 23 1154 2010 636629237 636630111 0.000000e+00 730.0
26 TraesCS3D01G441000 chr7A 87.438 605 54 9 1421 2004 635860823 635861426 0.000000e+00 676.0
27 TraesCS3D01G441000 chr7B 83.019 848 91 24 1203 2004 595007677 595008517 0.000000e+00 719.0
28 TraesCS3D01G441000 chr7B 81.319 182 22 9 2519 2692 595309680 595309857 1.530000e-28 137.0
29 TraesCS3D01G441000 chr7B 85.437 103 5 6 612 704 595306801 595306903 7.220000e-17 99.0
30 TraesCS3D01G441000 chr7B 90.278 72 6 1 2519 2590 595173845 595173915 3.360000e-15 93.5
31 TraesCS3D01G441000 chr7B 89.024 82 0 6 1017 1089 595307349 595307430 3.360000e-15 93.5
32 TraesCS3D01G441000 chr7D 84.932 730 78 14 1299 2004 550553393 550554114 0.000000e+00 710.0
33 TraesCS3D01G441000 chr7D 82.054 886 105 29 1154 2004 550800641 550801507 0.000000e+00 706.0
34 TraesCS3D01G441000 chr7D 95.726 351 13 2 2815 3163 279573559 279573909 5.920000e-157 564.0
35 TraesCS3D01G441000 chr7D 95.726 351 13 2 2815 3163 299234935 299235285 5.920000e-157 564.0
36 TraesCS3D01G441000 chr7D 95.965 347 13 1 2818 3163 84224950 84225296 2.130000e-156 562.0
37 TraesCS3D01G441000 chr7D 99.000 100 1 0 2697 2796 133680311 133680212 2.510000e-41 180.0
38 TraesCS3D01G441000 chr7D 98.980 98 1 0 2699 2796 529764379 529764282 3.240000e-40 176.0
39 TraesCS3D01G441000 chr7D 79.459 185 26 4 2519 2692 550802264 550802447 1.540000e-23 121.0
40 TraesCS3D01G441000 chr7D 87.629 97 9 3 1 96 492226951 492227045 3.340000e-20 110.0
41 TraesCS3D01G441000 chr7D 91.139 79 1 2 1017 1089 550800459 550800537 5.580000e-18 102.0
42 TraesCS3D01G441000 chr7D 81.301 123 17 4 1017 1136 550553078 550553197 9.340000e-16 95.3
43 TraesCS3D01G441000 chr7D 89.024 82 0 4 1017 1089 550643256 550643337 3.360000e-15 93.5
44 TraesCS3D01G441000 chr7D 80.208 96 3 7 612 704 550462690 550462772 1.230000e-04 58.4
45 TraesCS3D01G441000 chr7D 80.208 96 3 7 612 704 550642956 550643038 1.230000e-04 58.4
46 TraesCS3D01G441000 chr2D 90.315 444 36 5 155 592 645060369 645060811 2.740000e-160 575.0
47 TraesCS3D01G441000 chr2D 95.965 347 12 2 2818 3163 523132967 523132622 2.130000e-156 562.0
48 TraesCS3D01G441000 chr5D 95.977 348 12 2 2818 3163 382245149 382244802 5.920000e-157 564.0
49 TraesCS3D01G441000 chr5D 81.879 298 36 7 302 592 538419904 538420190 5.270000e-58 235.0
50 TraesCS3D01G441000 chr5D 97.059 102 0 2 2696 2796 520508005 520508104 5.430000e-38 169.0
51 TraesCS3D01G441000 chr5D 97.030 101 2 1 2696 2796 541575919 541575820 5.430000e-38 169.0
52 TraesCS3D01G441000 chr1D 95.989 349 11 2 2818 3163 332259636 332259288 5.920000e-157 564.0
53 TraesCS3D01G441000 chr1D 81.618 272 42 4 328 593 259592956 259593225 5.310000e-53 219.0
54 TraesCS3D01G441000 chr1D 100.000 101 0 0 2696 2796 461380081 461380181 1.500000e-43 187.0
55 TraesCS3D01G441000 chr6D 74.475 619 86 51 1 584 464232063 464232644 5.350000e-48 202.0
56 TraesCS3D01G441000 chr5A 99.010 101 0 1 2697 2796 491531754 491531654 2.510000e-41 180.0
57 TraesCS3D01G441000 chr5A 89.109 101 8 3 2696 2794 11996543 11996444 4.280000e-24 122.0
58 TraesCS3D01G441000 chr6A 100.000 28 0 0 157 184 114280538 114280565 6.000000e-03 52.8
59 TraesCS3D01G441000 chr2A 92.105 38 2 1 157 194 113278366 113278330 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G441000 chr3D 551344130 551347292 3162 True 1991.200000 5842 94.558000 1 3163 3 chr3D.!!$R1 3162
1 TraesCS3D01G441000 chr3D 551429960 551433267 3307 False 1346.000000 1886 89.728000 593 2698 2 chr3D.!!$F2 2105
2 TraesCS3D01G441000 chr3B 731094159 731096200 2041 True 2562.000000 2562 89.269000 593 2698 1 chr3B.!!$R1 2105
3 TraesCS3D01G441000 chr3A 688589347 688592341 2994 True 587.400000 2080 89.847400 593 2698 5 chr3A.!!$R2 2105
4 TraesCS3D01G441000 chr4D 7872383 7874485 2102 True 1026.500000 1762 81.976500 593 2698 2 chr4D.!!$R2 2105
5 TraesCS3D01G441000 chr4D 373846638 373847300 662 False 413.600000 761 94.759000 1 592 3 chr4D.!!$F3 591
6 TraesCS3D01G441000 chr4A 595442480 595444522 2042 False 1751.000000 1751 83.075000 593 2611 1 chr4A.!!$F1 2018
7 TraesCS3D01G441000 chr4B 14054225 14056385 2160 False 965.500000 1611 82.347000 601 2694 2 chr4B.!!$F1 2093
8 TraesCS3D01G441000 chr7A 636629237 636630111 874 False 730.000000 730 82.379000 1154 2010 1 chr7A.!!$F2 856
9 TraesCS3D01G441000 chr7A 635860823 635861426 603 False 676.000000 676 87.438000 1421 2004 1 chr7A.!!$F1 583
10 TraesCS3D01G441000 chr7B 595007677 595008517 840 False 719.000000 719 83.019000 1203 2004 1 chr7B.!!$F1 801
11 TraesCS3D01G441000 chr7D 550553078 550554114 1036 False 402.650000 710 83.116500 1017 2004 2 chr7D.!!$F6 987
12 TraesCS3D01G441000 chr7D 550800459 550802447 1988 False 309.666667 706 84.217333 1017 2692 3 chr7D.!!$F8 1675
13 TraesCS3D01G441000 chr6D 464232063 464232644 581 False 202.000000 202 74.475000 1 584 1 chr6D.!!$F1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
386 461 0.035458 GCCGGAATGATAGGTGAGGG 59.965 60.0 5.05 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2333 4211 1.074951 CCTTGTTTCTCGCCCCCTT 59.925 57.895 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
348 423 2.668212 CTGCTCCAACCGCCGAAA 60.668 61.111 0.00 0.00 0.00 3.46
349 424 2.668212 TGCTCCAACCGCCGAAAG 60.668 61.111 0.00 0.00 0.00 2.62
366 441 3.406559 GGCCTCGCCGTTGTAATC 58.593 61.111 0.00 0.00 39.62 1.75
367 442 2.522638 GGCCTCGCCGTTGTAATCG 61.523 63.158 0.00 0.00 39.62 3.34
368 443 3.003478 CCTCGCCGTTGTAATCGC 58.997 61.111 0.00 0.00 0.00 4.58
369 444 2.522638 CCTCGCCGTTGTAATCGCC 61.523 63.158 0.00 0.00 0.00 5.54
370 445 2.856346 CTCGCCGTTGTAATCGCCG 61.856 63.158 0.00 0.00 0.00 6.46
371 446 3.920553 CGCCGTTGTAATCGCCGG 61.921 66.667 0.00 0.00 43.22 6.13
372 447 2.509786 GCCGTTGTAATCGCCGGA 60.510 61.111 5.05 0.00 43.01 5.14
373 448 2.101835 GCCGTTGTAATCGCCGGAA 61.102 57.895 5.05 0.00 43.01 4.30
374 449 1.433837 GCCGTTGTAATCGCCGGAAT 61.434 55.000 5.05 0.00 43.01 3.01
375 450 0.303493 CCGTTGTAATCGCCGGAATG 59.697 55.000 5.05 0.00 43.01 2.67
376 451 1.282817 CGTTGTAATCGCCGGAATGA 58.717 50.000 5.05 0.00 0.00 2.57
377 452 1.864711 CGTTGTAATCGCCGGAATGAT 59.135 47.619 5.05 1.23 0.00 2.45
378 453 3.054166 CGTTGTAATCGCCGGAATGATA 58.946 45.455 5.05 0.00 0.00 2.15
379 454 3.121279 CGTTGTAATCGCCGGAATGATAG 59.879 47.826 5.05 0.00 0.00 2.08
380 455 3.313012 TGTAATCGCCGGAATGATAGG 57.687 47.619 5.05 0.00 0.00 2.57
381 456 2.631062 TGTAATCGCCGGAATGATAGGT 59.369 45.455 5.05 0.00 0.00 3.08
382 457 2.169832 AATCGCCGGAATGATAGGTG 57.830 50.000 5.05 0.00 36.92 4.00
383 458 1.338107 ATCGCCGGAATGATAGGTGA 58.662 50.000 5.05 0.00 46.83 4.02
384 459 0.673985 TCGCCGGAATGATAGGTGAG 59.326 55.000 5.05 0.00 39.36 3.51
385 460 0.319900 CGCCGGAATGATAGGTGAGG 60.320 60.000 5.05 0.00 37.73 3.86
386 461 0.035458 GCCGGAATGATAGGTGAGGG 59.965 60.000 5.05 0.00 0.00 4.30
387 462 0.687354 CCGGAATGATAGGTGAGGGG 59.313 60.000 0.00 0.00 0.00 4.79
388 463 1.717032 CGGAATGATAGGTGAGGGGA 58.283 55.000 0.00 0.00 0.00 4.81
389 464 2.260822 CGGAATGATAGGTGAGGGGAT 58.739 52.381 0.00 0.00 0.00 3.85
390 465 3.441101 CGGAATGATAGGTGAGGGGATA 58.559 50.000 0.00 0.00 0.00 2.59
391 466 3.195825 CGGAATGATAGGTGAGGGGATAC 59.804 52.174 0.00 0.00 0.00 2.24
392 467 4.430441 GGAATGATAGGTGAGGGGATACT 58.570 47.826 0.00 0.00 0.00 2.12
393 468 4.468153 GGAATGATAGGTGAGGGGATACTC 59.532 50.000 0.00 0.00 37.99 2.59
401 476 2.613421 GGGGATACTCGGGGGAGT 59.387 66.667 2.03 2.03 39.08 3.85
402 477 1.837499 GGGGATACTCGGGGGAGTG 60.837 68.421 6.99 0.00 36.68 3.51
403 478 1.837499 GGGATACTCGGGGGAGTGG 60.837 68.421 6.99 0.00 36.68 4.00
404 479 1.837499 GGATACTCGGGGGAGTGGG 60.837 68.421 6.99 0.00 36.68 4.61
405 480 1.075450 GATACTCGGGGGAGTGGGT 60.075 63.158 6.99 0.00 36.68 4.51
406 481 1.382695 ATACTCGGGGGAGTGGGTG 60.383 63.158 6.99 0.00 36.68 4.61
407 482 1.882189 ATACTCGGGGGAGTGGGTGA 61.882 60.000 6.99 0.00 36.68 4.02
408 483 2.509931 TACTCGGGGGAGTGGGTGAG 62.510 65.000 6.99 0.00 36.68 3.51
412 487 3.721706 GGGGAGTGGGTGAGCCAG 61.722 72.222 2.34 0.00 36.17 4.85
413 488 2.930562 GGGAGTGGGTGAGCCAGT 60.931 66.667 11.37 11.37 36.17 4.00
414 489 2.348998 GGAGTGGGTGAGCCAGTG 59.651 66.667 16.82 0.00 36.17 3.66
415 490 2.217038 GGAGTGGGTGAGCCAGTGA 61.217 63.158 16.82 0.00 36.17 3.41
416 491 1.557269 GGAGTGGGTGAGCCAGTGAT 61.557 60.000 16.82 0.00 36.17 3.06
417 492 0.326264 GAGTGGGTGAGCCAGTGATT 59.674 55.000 16.82 0.00 36.17 2.57
418 493 0.037303 AGTGGGTGAGCCAGTGATTG 59.963 55.000 10.70 0.00 36.17 2.67
419 494 0.250901 GTGGGTGAGCCAGTGATTGT 60.251 55.000 2.34 0.00 36.17 2.71
420 495 0.036732 TGGGTGAGCCAGTGATTGTC 59.963 55.000 0.00 0.00 36.17 3.18
421 496 1.021390 GGGTGAGCCAGTGATTGTCG 61.021 60.000 0.00 0.00 36.17 4.35
422 497 1.021390 GGTGAGCCAGTGATTGTCGG 61.021 60.000 0.00 0.00 34.09 4.79
423 498 1.021390 GTGAGCCAGTGATTGTCGGG 61.021 60.000 0.00 0.00 0.00 5.14
424 499 1.450312 GAGCCAGTGATTGTCGGGG 60.450 63.158 0.00 0.00 0.00 5.73
425 500 1.899437 GAGCCAGTGATTGTCGGGGA 61.899 60.000 0.00 0.00 0.00 4.81
426 501 1.002624 GCCAGTGATTGTCGGGGAA 60.003 57.895 0.00 0.00 0.00 3.97
427 502 0.608035 GCCAGTGATTGTCGGGGAAA 60.608 55.000 0.00 0.00 0.00 3.13
428 503 1.453155 CCAGTGATTGTCGGGGAAAG 58.547 55.000 0.00 0.00 0.00 2.62
429 504 1.453155 CAGTGATTGTCGGGGAAAGG 58.547 55.000 0.00 0.00 0.00 3.11
430 505 1.003118 CAGTGATTGTCGGGGAAAGGA 59.997 52.381 0.00 0.00 0.00 3.36
431 506 1.916181 AGTGATTGTCGGGGAAAGGAT 59.084 47.619 0.00 0.00 0.00 3.24
432 507 3.112263 AGTGATTGTCGGGGAAAGGATA 58.888 45.455 0.00 0.00 0.00 2.59
433 508 3.521937 AGTGATTGTCGGGGAAAGGATAA 59.478 43.478 0.00 0.00 0.00 1.75
434 509 3.877508 GTGATTGTCGGGGAAAGGATAAG 59.122 47.826 0.00 0.00 0.00 1.73
435 510 3.118038 TGATTGTCGGGGAAAGGATAAGG 60.118 47.826 0.00 0.00 0.00 2.69
436 511 1.961133 TGTCGGGGAAAGGATAAGGT 58.039 50.000 0.00 0.00 0.00 3.50
437 512 3.119009 TGTCGGGGAAAGGATAAGGTA 57.881 47.619 0.00 0.00 0.00 3.08
438 513 2.767960 TGTCGGGGAAAGGATAAGGTAC 59.232 50.000 0.00 0.00 0.00 3.34
439 514 2.034124 TCGGGGAAAGGATAAGGTACG 58.966 52.381 0.00 0.00 0.00 3.67
440 515 1.539712 CGGGGAAAGGATAAGGTACGC 60.540 57.143 0.00 0.00 0.00 4.42
441 516 1.539712 GGGGAAAGGATAAGGTACGCG 60.540 57.143 3.53 3.53 0.00 6.01
442 517 1.410153 GGGAAAGGATAAGGTACGCGA 59.590 52.381 15.93 0.00 0.00 5.87
443 518 2.545322 GGGAAAGGATAAGGTACGCGAG 60.545 54.545 15.93 0.00 0.00 5.03
445 520 3.316308 GGAAAGGATAAGGTACGCGAGTA 59.684 47.826 15.93 0.00 46.88 2.59
466 541 2.804697 AAAACGTTCGGGGGAATTTG 57.195 45.000 0.00 0.00 0.00 2.32
467 542 0.315886 AAACGTTCGGGGGAATTTGC 59.684 50.000 0.00 0.00 0.00 3.68
468 543 1.529152 AACGTTCGGGGGAATTTGCC 61.529 55.000 0.00 0.00 0.00 4.52
469 544 1.677633 CGTTCGGGGGAATTTGCCT 60.678 57.895 6.91 0.00 0.00 4.75
470 545 1.248101 CGTTCGGGGGAATTTGCCTT 61.248 55.000 6.91 0.00 0.00 4.35
471 546 0.530744 GTTCGGGGGAATTTGCCTTC 59.469 55.000 6.91 0.00 0.00 3.46
472 547 0.113385 TTCGGGGGAATTTGCCTTCA 59.887 50.000 6.91 0.00 0.00 3.02
473 548 0.113385 TCGGGGGAATTTGCCTTCAA 59.887 50.000 6.91 0.00 0.00 2.69
474 549 0.246360 CGGGGGAATTTGCCTTCAAC 59.754 55.000 6.91 0.00 30.75 3.18
475 550 0.613260 GGGGGAATTTGCCTTCAACC 59.387 55.000 6.91 0.00 30.75 3.77
476 551 0.613260 GGGGAATTTGCCTTCAACCC 59.387 55.000 6.91 0.00 36.05 4.11
477 552 0.246360 GGGAATTTGCCTTCAACCCG 59.754 55.000 0.00 0.00 29.70 5.28
478 553 1.253100 GGAATTTGCCTTCAACCCGA 58.747 50.000 0.00 0.00 30.75 5.14
479 554 1.616374 GGAATTTGCCTTCAACCCGAA 59.384 47.619 0.00 0.00 30.75 4.30
480 555 2.609491 GGAATTTGCCTTCAACCCGAAC 60.609 50.000 0.00 0.00 30.75 3.95
481 556 0.596082 ATTTGCCTTCAACCCGAACG 59.404 50.000 0.00 0.00 30.75 3.95
482 557 2.065906 TTTGCCTTCAACCCGAACGC 62.066 55.000 0.00 0.00 36.51 4.84
483 558 4.084888 GCCTTCAACCCGAACGCG 62.085 66.667 3.53 3.53 37.24 6.01
484 559 2.663852 CCTTCAACCCGAACGCGT 60.664 61.111 5.58 5.58 35.23 6.01
485 560 2.664436 CCTTCAACCCGAACGCGTC 61.664 63.158 14.44 5.31 35.23 5.19
486 561 2.662527 TTCAACCCGAACGCGTCC 60.663 61.111 14.44 0.00 35.23 4.79
487 562 4.668118 TCAACCCGAACGCGTCCC 62.668 66.667 14.44 6.90 35.23 4.46
488 563 4.675029 CAACCCGAACGCGTCCCT 62.675 66.667 14.44 0.00 35.23 4.20
489 564 4.675029 AACCCGAACGCGTCCCTG 62.675 66.667 14.44 4.57 35.23 4.45
493 568 4.143333 CGAACGCGTCCCTGGGAT 62.143 66.667 20.40 1.20 32.73 3.85
494 569 2.511600 GAACGCGTCCCTGGGATG 60.512 66.667 27.45 27.45 41.35 3.51
495 570 3.000819 AACGCGTCCCTGGGATGA 61.001 61.111 34.10 3.54 40.94 2.92
496 571 3.310860 AACGCGTCCCTGGGATGAC 62.311 63.158 34.10 23.76 40.94 3.06
499 574 2.184322 CGTCCCTGGGATGACGTG 59.816 66.667 27.74 6.41 46.83 4.49
500 575 2.584608 GTCCCTGGGATGACGTGG 59.415 66.667 20.40 0.00 32.73 4.94
501 576 3.399181 TCCCTGGGATGACGTGGC 61.399 66.667 12.53 0.00 0.00 5.01
502 577 3.716195 CCCTGGGATGACGTGGCA 61.716 66.667 7.01 0.00 0.00 4.92
503 578 2.350895 CCTGGGATGACGTGGCAA 59.649 61.111 0.00 0.00 0.00 4.52
504 579 1.077501 CCTGGGATGACGTGGCAAT 60.078 57.895 0.00 0.00 0.00 3.56
505 580 1.378882 CCTGGGATGACGTGGCAATG 61.379 60.000 0.00 0.00 0.00 2.82
506 581 1.378382 TGGGATGACGTGGCAATGG 60.378 57.895 0.00 0.00 0.00 3.16
507 582 2.120909 GGGATGACGTGGCAATGGG 61.121 63.158 0.00 0.00 0.00 4.00
508 583 1.077787 GGATGACGTGGCAATGGGA 60.078 57.895 0.00 0.00 0.00 4.37
509 584 0.466189 GGATGACGTGGCAATGGGAT 60.466 55.000 0.00 0.00 0.00 3.85
510 585 1.202758 GGATGACGTGGCAATGGGATA 60.203 52.381 0.00 0.00 0.00 2.59
511 586 1.873591 GATGACGTGGCAATGGGATAC 59.126 52.381 0.00 0.00 0.00 2.24
527 602 3.466836 GGATACCATCAAGATTCGTGCA 58.533 45.455 0.00 0.00 0.00 4.57
528 603 3.876914 GGATACCATCAAGATTCGTGCAA 59.123 43.478 0.00 0.00 0.00 4.08
529 604 4.260784 GGATACCATCAAGATTCGTGCAAC 60.261 45.833 0.00 0.00 0.00 4.17
540 615 3.339731 GTGCAACGGCTACAAGCA 58.660 55.556 0.78 0.00 44.75 3.91
541 616 1.082104 GTGCAACGGCTACAAGCAC 60.082 57.895 0.00 0.00 44.75 4.40
542 617 2.173382 GCAACGGCTACAAGCACG 59.827 61.111 0.78 4.97 44.75 5.34
543 618 2.604174 GCAACGGCTACAAGCACGT 61.604 57.895 8.84 8.84 45.24 4.49
544 619 4.449391 AACGGCTACAAGCACGTT 57.551 50.000 16.83 16.83 45.82 3.99
545 620 0.110823 CAACGGCTACAAGCACGTTC 60.111 55.000 18.59 0.00 46.85 3.95
546 621 1.554042 AACGGCTACAAGCACGTTCG 61.554 55.000 16.83 7.38 46.85 3.95
547 622 2.726691 CGGCTACAAGCACGTTCGG 61.727 63.158 0.78 0.00 44.75 4.30
548 623 2.474712 GCTACAAGCACGTTCGGC 59.525 61.111 0.00 0.00 41.89 5.54
549 624 2.027625 GCTACAAGCACGTTCGGCT 61.028 57.895 0.00 0.00 45.15 5.52
550 625 1.781555 CTACAAGCACGTTCGGCTG 59.218 57.895 0.00 0.00 41.66 4.85
551 626 2.227968 CTACAAGCACGTTCGGCTGC 62.228 60.000 0.00 0.00 41.66 5.25
552 627 2.980213 TACAAGCACGTTCGGCTGCA 62.980 55.000 0.50 0.00 41.66 4.41
553 628 3.349006 AAGCACGTTCGGCTGCAG 61.349 61.111 10.11 10.11 41.66 4.41
556 631 3.414700 CACGTTCGGCTGCAGGTC 61.415 66.667 17.12 0.00 0.00 3.85
557 632 4.681978 ACGTTCGGCTGCAGGTCC 62.682 66.667 17.12 8.15 0.00 4.46
558 633 4.680237 CGTTCGGCTGCAGGTCCA 62.680 66.667 17.12 0.00 0.00 4.02
559 634 2.743928 GTTCGGCTGCAGGTCCAG 60.744 66.667 17.12 5.94 35.93 3.86
560 635 2.922503 TTCGGCTGCAGGTCCAGA 60.923 61.111 17.12 8.12 34.77 3.86
561 636 2.515979 TTCGGCTGCAGGTCCAGAA 61.516 57.895 17.12 13.14 34.77 3.02
562 637 2.032528 CGGCTGCAGGTCCAGAAA 59.967 61.111 17.12 0.00 34.77 2.52
563 638 1.600636 CGGCTGCAGGTCCAGAAAA 60.601 57.895 17.12 0.00 34.77 2.29
564 639 0.962356 CGGCTGCAGGTCCAGAAAAT 60.962 55.000 17.12 0.00 34.77 1.82
565 640 0.813821 GGCTGCAGGTCCAGAAAATC 59.186 55.000 17.12 0.00 34.77 2.17
566 641 0.813821 GCTGCAGGTCCAGAAAATCC 59.186 55.000 17.12 0.00 34.77 3.01
567 642 1.089920 CTGCAGGTCCAGAAAATCCG 58.910 55.000 5.57 0.00 34.77 4.18
568 643 0.690192 TGCAGGTCCAGAAAATCCGA 59.310 50.000 0.00 0.00 0.00 4.55
569 644 1.073125 TGCAGGTCCAGAAAATCCGAA 59.927 47.619 0.00 0.00 0.00 4.30
570 645 2.290896 TGCAGGTCCAGAAAATCCGAAT 60.291 45.455 0.00 0.00 0.00 3.34
571 646 2.098117 GCAGGTCCAGAAAATCCGAATG 59.902 50.000 0.00 0.00 0.00 2.67
572 647 3.347216 CAGGTCCAGAAAATCCGAATGT 58.653 45.455 0.00 0.00 0.00 2.71
573 648 3.758554 CAGGTCCAGAAAATCCGAATGTT 59.241 43.478 0.00 0.00 0.00 2.71
574 649 4.010349 AGGTCCAGAAAATCCGAATGTTC 58.990 43.478 0.00 0.00 30.26 3.18
585 660 2.628194 CGAATGTTCGGCAGTTATCG 57.372 50.000 7.24 0.00 46.30 2.92
586 661 1.924524 CGAATGTTCGGCAGTTATCGT 59.075 47.619 7.24 0.00 46.30 3.73
587 662 2.347452 CGAATGTTCGGCAGTTATCGTT 59.653 45.455 7.24 0.00 46.30 3.85
588 663 3.541516 CGAATGTTCGGCAGTTATCGTTC 60.542 47.826 7.24 0.00 46.30 3.95
589 664 1.717194 TGTTCGGCAGTTATCGTTCC 58.283 50.000 0.00 0.00 0.00 3.62
590 665 1.004595 GTTCGGCAGTTATCGTTCCC 58.995 55.000 0.00 0.00 0.00 3.97
591 666 0.458889 TTCGGCAGTTATCGTTCCCG 60.459 55.000 0.00 0.00 37.21 5.14
879 996 3.461773 CGCTGTCCGTCCCTCCAT 61.462 66.667 0.00 0.00 0.00 3.41
880 997 2.501610 GCTGTCCGTCCCTCCATC 59.498 66.667 0.00 0.00 0.00 3.51
881 998 2.808315 CTGTCCGTCCCTCCATCG 59.192 66.667 0.00 0.00 0.00 3.84
882 999 3.432051 CTGTCCGTCCCTCCATCGC 62.432 68.421 0.00 0.00 0.00 4.58
2024 3744 3.797559 AGAGTTGGCTTTTCCTAGCTT 57.202 42.857 0.00 0.00 40.99 3.74
2025 3745 4.105754 AGAGTTGGCTTTTCCTAGCTTT 57.894 40.909 0.00 0.00 40.99 3.51
2026 3746 5.242795 AGAGTTGGCTTTTCCTAGCTTTA 57.757 39.130 0.00 0.00 40.99 1.85
2114 3928 2.349438 CGGTTGGATCAGTTGTTCAACG 60.349 50.000 9.54 5.84 0.00 4.10
2145 3964 6.040878 AGAAACAGTCCGTAGTATTGCATAC 58.959 40.000 0.00 0.00 35.99 2.39
2249 4074 2.271173 GGGGGTTGCGACTTAGGG 59.729 66.667 3.59 0.00 0.00 3.53
2255 4080 0.741221 GTTGCGACTTAGGGGAGCAG 60.741 60.000 0.00 0.00 39.11 4.24
2274 4108 2.102420 CAGTGGCGGAGATGGTGTAATA 59.898 50.000 0.00 0.00 0.00 0.98
2283 4117 4.261322 GGAGATGGTGTAATAAGACGCGTA 60.261 45.833 13.97 0.00 0.00 4.42
2333 4211 6.231258 TCTACGAGACTAAGACTATGGTGA 57.769 41.667 0.00 0.00 0.00 4.02
2370 4248 1.967779 GGGCAAAAAGTAAAGAGGGCA 59.032 47.619 0.00 0.00 0.00 5.36
2481 4396 8.388656 AGGGTTTATAGATCTAAACAACTGGA 57.611 34.615 18.40 0.00 41.36 3.86
2485 4400 9.989869 GTTTATAGATCTAAACAACTGGAAAGC 57.010 33.333 13.82 0.00 40.01 3.51
2502 4419 0.399233 AGCGGGGGAAAGATAGAGCT 60.399 55.000 0.00 0.00 0.00 4.09
2698 4855 5.516059 AGGCTAGCTAGGTTTAAGGTTTT 57.484 39.130 22.10 0.00 0.00 2.43
2699 4856 5.888901 AGGCTAGCTAGGTTTAAGGTTTTT 58.111 37.500 22.10 0.00 0.00 1.94
2720 4877 5.927954 TTTTTGAAAGATCCAGCAATTGC 57.072 34.783 23.05 23.05 42.49 3.56
2738 5303 3.957591 TGCTGGCTTTTCATTGCATTA 57.042 38.095 0.00 0.00 0.00 1.90
2739 5304 3.852286 TGCTGGCTTTTCATTGCATTAG 58.148 40.909 0.00 0.00 0.00 1.73
2740 5305 2.606272 GCTGGCTTTTCATTGCATTAGC 59.394 45.455 0.00 0.00 42.57 3.09
2756 5321 3.072476 GCAGGAAGCAGTGGGAGA 58.928 61.111 0.00 0.00 44.79 3.71
2757 5322 1.376466 GCAGGAAGCAGTGGGAGAA 59.624 57.895 0.00 0.00 44.79 2.87
2758 5323 0.250901 GCAGGAAGCAGTGGGAGAAA 60.251 55.000 0.00 0.00 44.79 2.52
2759 5324 1.819305 GCAGGAAGCAGTGGGAGAAAA 60.819 52.381 0.00 0.00 44.79 2.29
2760 5325 2.586425 CAGGAAGCAGTGGGAGAAAAA 58.414 47.619 0.00 0.00 0.00 1.94
2772 5337 2.492753 GGGAGAAAAACATGAGGGGGTT 60.493 50.000 0.00 0.00 0.00 4.11
2773 5338 2.826128 GGAGAAAAACATGAGGGGGTTC 59.174 50.000 0.00 0.00 0.00 3.62
2776 5341 2.309136 AAAACATGAGGGGGTTCAGG 57.691 50.000 0.00 0.00 35.16 3.86
2777 5342 1.158007 AAACATGAGGGGGTTCAGGT 58.842 50.000 0.00 0.00 43.24 4.00
2778 5343 0.698818 AACATGAGGGGGTTCAGGTC 59.301 55.000 0.00 0.00 40.81 3.85
2779 5344 1.208165 ACATGAGGGGGTTCAGGTCC 61.208 60.000 0.00 0.00 37.53 4.46
2781 5346 0.722676 ATGAGGGGGTTCAGGTCCTA 59.277 55.000 0.00 0.00 0.00 2.94
2782 5347 0.042731 TGAGGGGGTTCAGGTCCTAG 59.957 60.000 0.00 0.00 0.00 3.02
2783 5348 0.691413 GAGGGGGTTCAGGTCCTAGG 60.691 65.000 0.82 0.82 0.00 3.02
2784 5349 1.160289 AGGGGGTTCAGGTCCTAGGA 61.160 60.000 7.62 7.62 0.00 2.94
2785 5350 0.981801 GGGGGTTCAGGTCCTAGGAC 60.982 65.000 30.72 30.72 43.87 3.85
2796 5361 1.481363 GTCCTAGGACCAAGTACAGGC 59.519 57.143 28.87 1.17 39.08 4.85
2798 5363 1.622725 CCTAGGACCAAGTACAGGCCT 60.623 57.143 1.05 0.00 36.83 5.19
2802 5367 1.407437 GGACCAAGTACAGGCCTCATG 60.407 57.143 0.00 0.00 0.00 3.07
2804 5369 1.705186 ACCAAGTACAGGCCTCATGTT 59.295 47.619 0.00 0.00 32.02 2.71
2805 5370 2.108250 ACCAAGTACAGGCCTCATGTTT 59.892 45.455 0.00 0.00 32.02 2.83
2806 5371 3.329520 ACCAAGTACAGGCCTCATGTTTA 59.670 43.478 0.00 0.00 32.02 2.01
2807 5372 4.018415 ACCAAGTACAGGCCTCATGTTTAT 60.018 41.667 0.00 0.00 32.02 1.40
2808 5373 4.336433 CCAAGTACAGGCCTCATGTTTATG 59.664 45.833 0.00 0.00 35.57 1.90
2809 5374 4.156455 AGTACAGGCCTCATGTTTATGG 57.844 45.455 0.00 0.00 34.97 2.74
2810 5375 3.523564 AGTACAGGCCTCATGTTTATGGT 59.476 43.478 0.00 0.00 34.97 3.55
2811 5376 3.456380 ACAGGCCTCATGTTTATGGTT 57.544 42.857 0.00 0.00 34.97 3.67
2812 5377 3.778265 ACAGGCCTCATGTTTATGGTTT 58.222 40.909 0.00 0.00 34.97 3.27
2813 5378 4.929479 ACAGGCCTCATGTTTATGGTTTA 58.071 39.130 0.00 0.00 34.97 2.01
2814 5379 5.329399 ACAGGCCTCATGTTTATGGTTTAA 58.671 37.500 0.00 0.00 34.97 1.52
2817 5382 4.099419 GGCCTCATGTTTATGGTTTAAGGG 59.901 45.833 0.00 0.00 34.97 3.95
2818 5383 4.099419 GCCTCATGTTTATGGTTTAAGGGG 59.901 45.833 0.00 0.00 34.97 4.79
2819 5384 4.649218 CCTCATGTTTATGGTTTAAGGGGG 59.351 45.833 0.00 0.00 34.97 5.40
2820 5385 5.515106 CTCATGTTTATGGTTTAAGGGGGA 58.485 41.667 0.00 0.00 34.97 4.81
2823 5388 6.217900 TCATGTTTATGGTTTAAGGGGGAGTA 59.782 38.462 0.00 0.00 34.97 2.59
2824 5389 6.069705 TGTTTATGGTTTAAGGGGGAGTAG 57.930 41.667 0.00 0.00 0.00 2.57
2825 5390 5.044698 TGTTTATGGTTTAAGGGGGAGTAGG 60.045 44.000 0.00 0.00 0.00 3.18
2827 5392 2.554563 TGGTTTAAGGGGGAGTAGGAC 58.445 52.381 0.00 0.00 0.00 3.85
2828 5393 2.114871 TGGTTTAAGGGGGAGTAGGACT 59.885 50.000 0.00 0.00 0.00 3.85
2829 5394 2.770802 GGTTTAAGGGGGAGTAGGACTC 59.229 54.545 0.00 0.00 44.32 3.36
2873 5438 3.474570 CCGCCTCTCCCTCCCTTG 61.475 72.222 0.00 0.00 0.00 3.61
2874 5439 4.168291 CGCCTCTCCCTCCCTTGC 62.168 72.222 0.00 0.00 0.00 4.01
2875 5440 2.690510 GCCTCTCCCTCCCTTGCT 60.691 66.667 0.00 0.00 0.00 3.91
2877 5442 2.069430 CCTCTCCCTCCCTTGCTCC 61.069 68.421 0.00 0.00 0.00 4.70
2878 5443 1.002792 CTCTCCCTCCCTTGCTCCT 59.997 63.158 0.00 0.00 0.00 3.69
2880 5445 0.178861 TCTCCCTCCCTTGCTCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
2881 5446 1.080498 TCTCCCTCCCTTGCTCCTTTA 59.920 52.381 0.00 0.00 0.00 1.85
2882 5447 2.131023 CTCCCTCCCTTGCTCCTTTAT 58.869 52.381 0.00 0.00 0.00 1.40
2883 5448 3.051341 TCTCCCTCCCTTGCTCCTTTATA 60.051 47.826 0.00 0.00 0.00 0.98
2886 5451 4.844655 TCCCTCCCTTGCTCCTTTATATAC 59.155 45.833 0.00 0.00 0.00 1.47
2887 5452 4.322801 CCCTCCCTTGCTCCTTTATATACG 60.323 50.000 0.00 0.00 0.00 3.06
2888 5453 4.322801 CCTCCCTTGCTCCTTTATATACGG 60.323 50.000 0.00 0.00 0.00 4.02
2889 5454 3.581332 TCCCTTGCTCCTTTATATACGGG 59.419 47.826 0.00 0.00 0.00 5.28
2890 5455 3.307480 CCCTTGCTCCTTTATATACGGGG 60.307 52.174 0.00 0.00 0.00 5.73
2891 5456 3.307480 CCTTGCTCCTTTATATACGGGGG 60.307 52.174 0.56 0.00 0.00 5.40
2892 5457 1.626825 TGCTCCTTTATATACGGGGGC 59.373 52.381 14.80 14.80 44.87 5.80
2893 5458 1.626825 GCTCCTTTATATACGGGGGCA 59.373 52.381 16.12 0.00 44.12 5.36
2894 5459 2.354805 GCTCCTTTATATACGGGGGCAG 60.355 54.545 16.12 3.07 44.12 4.85
2895 5460 2.236395 CTCCTTTATATACGGGGGCAGG 59.764 54.545 0.00 0.00 0.00 4.85
2896 5461 1.280998 CCTTTATATACGGGGGCAGGG 59.719 57.143 0.00 0.00 0.00 4.45
2897 5462 1.280998 CTTTATATACGGGGGCAGGGG 59.719 57.143 0.00 0.00 0.00 4.79
2898 5463 1.202769 TTATATACGGGGGCAGGGGC 61.203 60.000 0.00 0.00 40.13 5.80
2899 5464 2.404039 TATATACGGGGGCAGGGGCA 62.404 60.000 0.00 0.00 43.71 5.36
2914 5479 3.478540 GGCACCCCATAGACAGAAC 57.521 57.895 0.00 0.00 0.00 3.01
2918 5483 3.356290 GCACCCCATAGACAGAACAATT 58.644 45.455 0.00 0.00 0.00 2.32
2921 5486 5.195940 CACCCCATAGACAGAACAATTGAT 58.804 41.667 13.59 0.00 0.00 2.57
2922 5487 5.297776 CACCCCATAGACAGAACAATTGATC 59.702 44.000 13.59 10.31 0.00 2.92
2924 5489 5.762218 CCCCATAGACAGAACAATTGATCTC 59.238 44.000 14.75 6.13 0.00 2.75
2925 5490 6.409005 CCCCATAGACAGAACAATTGATCTCT 60.409 42.308 14.75 12.50 0.00 3.10
2926 5491 7.052873 CCCATAGACAGAACAATTGATCTCTT 58.947 38.462 14.75 5.77 0.00 2.85
2927 5492 7.012138 CCCATAGACAGAACAATTGATCTCTTG 59.988 40.741 14.75 8.27 0.00 3.02
2928 5493 7.767659 CCATAGACAGAACAATTGATCTCTTGA 59.232 37.037 14.75 2.98 0.00 3.02
2929 5494 9.327628 CATAGACAGAACAATTGATCTCTTGAT 57.672 33.333 14.75 4.96 35.26 2.57
2930 5495 7.846644 AGACAGAACAATTGATCTCTTGATC 57.153 36.000 14.75 8.26 46.89 2.92
2931 5496 7.622713 AGACAGAACAATTGATCTCTTGATCT 58.377 34.615 14.75 10.02 46.84 2.75
2932 5497 7.765360 AGACAGAACAATTGATCTCTTGATCTC 59.235 37.037 14.75 1.26 46.84 2.75
2934 5499 8.102047 ACAGAACAATTGATCTCTTGATCTCTT 58.898 33.333 14.75 0.00 46.84 2.85
2935 5500 9.597170 CAGAACAATTGATCTCTTGATCTCTTA 57.403 33.333 14.75 0.00 46.84 2.10
2936 5501 9.820725 AGAACAATTGATCTCTTGATCTCTTAG 57.179 33.333 13.59 0.00 46.84 2.18
2937 5502 8.436046 AACAATTGATCTCTTGATCTCTTAGC 57.564 34.615 13.59 0.00 46.84 3.09
2938 5503 6.991531 ACAATTGATCTCTTGATCTCTTAGCC 59.008 38.462 13.59 0.00 46.84 3.93
2939 5504 4.844998 TGATCTCTTGATCTCTTAGCCG 57.155 45.455 7.42 0.00 46.84 5.52
2940 5505 4.211125 TGATCTCTTGATCTCTTAGCCGT 58.789 43.478 7.42 0.00 46.84 5.68
2941 5506 4.037327 TGATCTCTTGATCTCTTAGCCGTG 59.963 45.833 7.42 0.00 46.84 4.94
2963 5528 3.422204 GTGCCCCCTCCACCATAA 58.578 61.111 0.00 0.00 0.00 1.90
2964 5529 1.930520 GTGCCCCCTCCACCATAAT 59.069 57.895 0.00 0.00 0.00 1.28
2965 5530 0.178990 GTGCCCCCTCCACCATAATC 60.179 60.000 0.00 0.00 0.00 1.75
2967 5532 1.360393 GCCCCCTCCACCATAATCCA 61.360 60.000 0.00 0.00 0.00 3.41
2968 5533 0.478507 CCCCCTCCACCATAATCCAC 59.521 60.000 0.00 0.00 0.00 4.02
2969 5534 0.478507 CCCCTCCACCATAATCCACC 59.521 60.000 0.00 0.00 0.00 4.61
2970 5535 1.522900 CCCTCCACCATAATCCACCT 58.477 55.000 0.00 0.00 0.00 4.00
2971 5536 1.421646 CCCTCCACCATAATCCACCTC 59.578 57.143 0.00 0.00 0.00 3.85
2972 5537 1.070758 CCTCCACCATAATCCACCTCG 59.929 57.143 0.00 0.00 0.00 4.63
2973 5538 2.039418 CTCCACCATAATCCACCTCGA 58.961 52.381 0.00 0.00 0.00 4.04
2974 5539 2.634940 CTCCACCATAATCCACCTCGAT 59.365 50.000 0.00 0.00 0.00 3.59
2975 5540 3.832490 CTCCACCATAATCCACCTCGATA 59.168 47.826 0.00 0.00 0.00 2.92
2976 5541 4.228010 TCCACCATAATCCACCTCGATAA 58.772 43.478 0.00 0.00 0.00 1.75
2977 5542 4.844085 TCCACCATAATCCACCTCGATAAT 59.156 41.667 0.00 0.00 0.00 1.28
2978 5543 6.020389 TCCACCATAATCCACCTCGATAATA 58.980 40.000 0.00 0.00 0.00 0.98
2980 5545 6.986817 CCACCATAATCCACCTCGATAATATC 59.013 42.308 0.00 0.00 0.00 1.63
2981 5546 7.364673 CCACCATAATCCACCTCGATAATATCA 60.365 40.741 0.87 0.00 0.00 2.15
2982 5547 8.206867 CACCATAATCCACCTCGATAATATCAT 58.793 37.037 0.87 0.00 0.00 2.45
2983 5548 9.434275 ACCATAATCCACCTCGATAATATCATA 57.566 33.333 0.87 0.00 0.00 2.15
2984 5549 9.920133 CCATAATCCACCTCGATAATATCATAG 57.080 37.037 0.87 0.00 0.00 2.23
2987 5552 6.208988 TCCACCTCGATAATATCATAGTGC 57.791 41.667 0.87 0.00 0.00 4.40
2988 5553 5.952347 TCCACCTCGATAATATCATAGTGCT 59.048 40.000 0.87 0.00 0.00 4.40
2991 5556 5.420421 ACCTCGATAATATCATAGTGCTGCT 59.580 40.000 0.00 0.00 0.00 4.24
2992 5557 6.071108 ACCTCGATAATATCATAGTGCTGCTT 60.071 38.462 0.00 0.00 0.00 3.91
2993 5558 7.122799 ACCTCGATAATATCATAGTGCTGCTTA 59.877 37.037 0.00 0.00 0.00 3.09
2996 5561 6.199908 CGATAATATCATAGTGCTGCTTAGGC 59.800 42.308 0.00 0.00 39.26 3.93
2997 5562 2.160822 ATCATAGTGCTGCTTAGGCG 57.839 50.000 0.00 0.00 42.25 5.52
2998 5563 1.111277 TCATAGTGCTGCTTAGGCGA 58.889 50.000 0.00 0.00 42.25 5.54
3000 5565 1.863454 CATAGTGCTGCTTAGGCGAAG 59.137 52.381 2.68 2.68 42.25 3.79
3014 5579 2.202756 GAAGCCCTGCGTCGGTAG 60.203 66.667 0.00 0.00 0.00 3.18
3017 5582 2.502692 AAGCCCTGCGTCGGTAGAAC 62.503 60.000 0.00 0.00 0.00 3.01
3018 5583 2.967397 CCCTGCGTCGGTAGAACA 59.033 61.111 0.00 0.00 0.00 3.18
3019 5584 1.515954 CCCTGCGTCGGTAGAACAT 59.484 57.895 0.00 0.00 0.00 2.71
3020 5585 0.527817 CCCTGCGTCGGTAGAACATC 60.528 60.000 0.00 0.00 0.00 3.06
3022 5587 1.202417 CCTGCGTCGGTAGAACATCAT 60.202 52.381 0.00 0.00 0.00 2.45
3023 5588 2.120232 CTGCGTCGGTAGAACATCATC 58.880 52.381 0.00 0.00 0.00 2.92
3024 5589 1.474879 TGCGTCGGTAGAACATCATCA 59.525 47.619 0.00 0.00 0.00 3.07
3025 5590 2.100749 TGCGTCGGTAGAACATCATCAT 59.899 45.455 0.00 0.00 0.00 2.45
3026 5591 2.726760 GCGTCGGTAGAACATCATCATC 59.273 50.000 0.00 0.00 0.00 2.92
3028 5593 3.548214 CGTCGGTAGAACATCATCATCGT 60.548 47.826 0.00 0.00 0.00 3.73
3029 5594 3.975670 GTCGGTAGAACATCATCATCGTC 59.024 47.826 0.00 0.00 0.00 4.20
3030 5595 3.630312 TCGGTAGAACATCATCATCGTCA 59.370 43.478 0.00 0.00 0.00 4.35
3031 5596 3.731216 CGGTAGAACATCATCATCGTCAC 59.269 47.826 0.00 0.00 0.00 3.67
3034 5599 4.412796 AGAACATCATCATCGTCACCAT 57.587 40.909 0.00 0.00 0.00 3.55
3036 5601 2.216046 ACATCATCATCGTCACCATGC 58.784 47.619 0.00 0.00 0.00 4.06
3037 5602 2.158856 ACATCATCATCGTCACCATGCT 60.159 45.455 0.00 0.00 0.00 3.79
3038 5603 1.944032 TCATCATCGTCACCATGCTG 58.056 50.000 0.00 0.00 0.00 4.41
3039 5604 1.207811 TCATCATCGTCACCATGCTGT 59.792 47.619 0.00 0.00 0.00 4.40
3040 5605 1.596260 CATCATCGTCACCATGCTGTC 59.404 52.381 0.00 0.00 0.00 3.51
3041 5606 0.607620 TCATCGTCACCATGCTGTCA 59.392 50.000 0.00 0.00 0.00 3.58
3042 5607 1.207811 TCATCGTCACCATGCTGTCAT 59.792 47.619 0.00 0.00 0.00 3.06
3044 5609 1.020861 TCGTCACCATGCTGTCATGC 61.021 55.000 6.56 0.00 46.69 4.06
3046 5611 0.450583 GTCACCATGCTGTCATGCTG 59.549 55.000 6.56 4.59 46.69 4.41
3047 5612 0.325602 TCACCATGCTGTCATGCTGA 59.674 50.000 6.56 6.36 46.69 4.26
3048 5613 0.450583 CACCATGCTGTCATGCTGAC 59.549 55.000 8.75 8.75 46.69 3.51
3056 5621 3.822607 GTCATGCTGACGGAACTCT 57.177 52.632 1.40 0.00 37.67 3.24
3057 5622 1.634702 GTCATGCTGACGGAACTCTC 58.365 55.000 1.40 0.00 37.67 3.20
3058 5623 0.532573 TCATGCTGACGGAACTCTCC 59.467 55.000 0.00 0.00 38.52 3.71
3059 5624 0.460987 CATGCTGACGGAACTCTCCC 60.461 60.000 0.00 0.00 38.71 4.30
3060 5625 0.616111 ATGCTGACGGAACTCTCCCT 60.616 55.000 0.00 0.00 38.71 4.20
3061 5626 1.251527 TGCTGACGGAACTCTCCCTC 61.252 60.000 0.00 0.00 38.71 4.30
3062 5627 1.251527 GCTGACGGAACTCTCCCTCA 61.252 60.000 0.00 0.00 38.71 3.86
3063 5628 1.257743 CTGACGGAACTCTCCCTCAA 58.742 55.000 0.00 0.00 36.63 3.02
3064 5629 1.618837 CTGACGGAACTCTCCCTCAAA 59.381 52.381 0.00 0.00 36.63 2.69
3065 5630 1.618837 TGACGGAACTCTCCCTCAAAG 59.381 52.381 0.00 0.00 38.71 2.77
3067 5632 0.610687 CGGAACTCTCCCTCAAAGCT 59.389 55.000 0.00 0.00 38.71 3.74
3068 5633 1.404851 CGGAACTCTCCCTCAAAGCTC 60.405 57.143 0.00 0.00 38.71 4.09
3069 5634 1.625818 GGAACTCTCCCTCAAAGCTCA 59.374 52.381 0.00 0.00 35.42 4.26
3070 5635 2.354604 GGAACTCTCCCTCAAAGCTCAG 60.355 54.545 0.00 0.00 35.42 3.35
3071 5636 0.612744 ACTCTCCCTCAAAGCTCAGC 59.387 55.000 0.00 0.00 0.00 4.26
3072 5637 0.903942 CTCTCCCTCAAAGCTCAGCT 59.096 55.000 0.00 0.00 42.56 4.24
3073 5638 0.612229 TCTCCCTCAAAGCTCAGCTG 59.388 55.000 7.63 7.63 39.62 4.24
3075 5640 0.837691 TCCCTCAAAGCTCAGCTGGA 60.838 55.000 15.13 0.00 39.62 3.86
3076 5641 0.255318 CCCTCAAAGCTCAGCTGGAT 59.745 55.000 15.13 0.00 39.62 3.41
3077 5642 1.666054 CCTCAAAGCTCAGCTGGATC 58.334 55.000 15.13 3.23 39.62 3.36
3079 5644 0.107993 TCAAAGCTCAGCTGGATCGG 60.108 55.000 15.13 0.00 39.62 4.18
3081 5646 0.177604 AAAGCTCAGCTGGATCGGAG 59.822 55.000 15.13 3.46 39.62 4.63
3083 5648 0.975040 AGCTCAGCTGGATCGGAGTT 60.975 55.000 15.13 0.00 37.57 3.01
3084 5649 0.529555 GCTCAGCTGGATCGGAGTTC 60.530 60.000 15.13 0.00 32.12 3.01
3093 5658 2.033141 TCGGAGTTCGAGGGACGT 59.967 61.111 0.00 0.00 43.74 4.34
3094 5659 2.037136 TCGGAGTTCGAGGGACGTC 61.037 63.158 7.13 7.13 43.74 4.34
3095 5660 2.330372 CGGAGTTCGAGGGACGTCA 61.330 63.158 18.91 0.00 42.43 4.35
3097 5662 0.100861 GGAGTTCGAGGGACGTCATC 59.899 60.000 18.91 13.48 43.13 2.92
3115 5680 3.717899 GTGCTGAACGTGTGCTGA 58.282 55.556 8.69 0.00 0.00 4.26
3116 5681 2.013807 GTGCTGAACGTGTGCTGAA 58.986 52.632 8.69 0.00 0.00 3.02
3117 5682 0.316196 GTGCTGAACGTGTGCTGAAC 60.316 55.000 8.69 0.00 0.00 3.18
3119 5684 0.233332 GCTGAACGTGTGCTGAACTC 59.767 55.000 0.00 0.00 0.00 3.01
3123 5688 3.848142 CGTGTGCTGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
3124 5689 1.734477 CGTGTGCTGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
3126 5691 0.946221 GTGTGCTGAACTCGGAGGTG 60.946 60.000 10.23 0.00 0.00 4.00
3127 5692 1.367840 GTGCTGAACTCGGAGGTGT 59.632 57.895 10.23 0.00 0.00 4.16
3128 5693 0.667792 GTGCTGAACTCGGAGGTGTC 60.668 60.000 10.23 4.50 0.00 3.67
3129 5694 1.444553 GCTGAACTCGGAGGTGTCG 60.445 63.158 10.23 0.00 0.00 4.35
3130 5695 1.957562 CTGAACTCGGAGGTGTCGT 59.042 57.895 10.23 0.00 0.00 4.34
3132 5697 1.733399 GAACTCGGAGGTGTCGTGC 60.733 63.158 10.23 0.00 0.00 5.34
3133 5698 3.553437 AACTCGGAGGTGTCGTGCG 62.553 63.158 10.23 0.00 34.68 5.34
3134 5699 4.039357 CTCGGAGGTGTCGTGCGT 62.039 66.667 0.00 0.00 34.93 5.24
3135 5700 3.553437 CTCGGAGGTGTCGTGCGTT 62.553 63.158 0.00 0.00 34.93 4.84
3137 5702 3.103911 GGAGGTGTCGTGCGTTCG 61.104 66.667 0.00 0.00 0.00 3.95
3138 5703 3.103911 GAGGTGTCGTGCGTTCGG 61.104 66.667 2.16 0.00 0.00 4.30
3139 5704 3.836176 GAGGTGTCGTGCGTTCGGT 62.836 63.158 2.16 0.00 0.00 4.69
3142 5707 1.370900 GTGTCGTGCGTTCGGTACT 60.371 57.895 0.00 0.00 0.00 2.73
3145 5710 0.661187 GTCGTGCGTTCGGTACTTGA 60.661 55.000 0.00 0.00 0.00 3.02
3146 5711 0.241749 TCGTGCGTTCGGTACTTGAT 59.758 50.000 0.00 0.00 0.00 2.57
3147 5712 0.638746 CGTGCGTTCGGTACTTGATC 59.361 55.000 0.00 0.00 0.00 2.92
3149 5714 0.457166 TGCGTTCGGTACTTGATCGG 60.457 55.000 15.69 0.00 30.29 4.18
3150 5715 0.457337 GCGTTCGGTACTTGATCGGT 60.457 55.000 15.69 0.00 30.29 4.69
3152 5717 1.542544 GTTCGGTACTTGATCGGTCG 58.457 55.000 0.00 0.00 30.29 4.79
3153 5718 0.452987 TTCGGTACTTGATCGGTCGG 59.547 55.000 0.00 0.00 30.29 4.79
3154 5719 0.392863 TCGGTACTTGATCGGTCGGA 60.393 55.000 0.00 0.00 30.29 4.55
3162 5727 3.165559 GATCGGTCGGATCGTGAAG 57.834 57.895 10.85 0.00 42.02 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.441675 ATGCGAGAGGGCTGCATCT 61.442 57.895 0.50 3.95 45.68 2.90
89 91 3.691342 CTTGCCTGTCCCCGACGA 61.691 66.667 0.00 0.00 34.95 4.20
331 406 2.668212 TTTCGGCGGTTGGAGCAG 60.668 61.111 7.21 0.00 36.08 4.24
332 407 2.668212 CTTTCGGCGGTTGGAGCA 60.668 61.111 7.21 0.00 36.08 4.26
333 408 3.431725 CCTTTCGGCGGTTGGAGC 61.432 66.667 7.21 0.00 0.00 4.70
349 424 2.522638 CGATTACAACGGCGAGGCC 61.523 63.158 16.62 0.00 46.75 5.19
350 425 3.003478 CGATTACAACGGCGAGGC 58.997 61.111 16.62 0.00 0.00 4.70
351 426 2.522638 GGCGATTACAACGGCGAGG 61.523 63.158 16.62 7.55 45.03 4.63
352 427 3.003478 GGCGATTACAACGGCGAG 58.997 61.111 16.62 8.41 45.03 5.03
357 432 1.282817 TCATTCCGGCGATTACAACG 58.717 50.000 9.30 0.00 0.00 4.10
358 433 3.432252 CCTATCATTCCGGCGATTACAAC 59.568 47.826 9.30 0.00 0.00 3.32
359 434 3.070446 ACCTATCATTCCGGCGATTACAA 59.930 43.478 9.30 0.00 0.00 2.41
360 435 2.631062 ACCTATCATTCCGGCGATTACA 59.369 45.455 9.30 0.00 0.00 2.41
361 436 2.993899 CACCTATCATTCCGGCGATTAC 59.006 50.000 9.30 0.00 0.00 1.89
362 437 2.894765 TCACCTATCATTCCGGCGATTA 59.105 45.455 9.30 0.00 0.00 1.75
363 438 1.691976 TCACCTATCATTCCGGCGATT 59.308 47.619 9.30 0.00 0.00 3.34
364 439 1.273606 CTCACCTATCATTCCGGCGAT 59.726 52.381 9.30 0.82 0.00 4.58
365 440 0.673985 CTCACCTATCATTCCGGCGA 59.326 55.000 9.30 0.00 0.00 5.54
366 441 0.319900 CCTCACCTATCATTCCGGCG 60.320 60.000 0.00 0.00 0.00 6.46
367 442 0.035458 CCCTCACCTATCATTCCGGC 59.965 60.000 0.00 0.00 0.00 6.13
368 443 0.687354 CCCCTCACCTATCATTCCGG 59.313 60.000 0.00 0.00 0.00 5.14
369 444 1.717032 TCCCCTCACCTATCATTCCG 58.283 55.000 0.00 0.00 0.00 4.30
370 445 4.430441 AGTATCCCCTCACCTATCATTCC 58.570 47.826 0.00 0.00 0.00 3.01
371 446 4.158764 CGAGTATCCCCTCACCTATCATTC 59.841 50.000 0.00 0.00 0.00 2.67
372 447 4.090090 CGAGTATCCCCTCACCTATCATT 58.910 47.826 0.00 0.00 0.00 2.57
373 448 3.564571 CCGAGTATCCCCTCACCTATCAT 60.565 52.174 0.00 0.00 0.00 2.45
374 449 2.225041 CCGAGTATCCCCTCACCTATCA 60.225 54.545 0.00 0.00 0.00 2.15
375 450 2.448453 CCGAGTATCCCCTCACCTATC 58.552 57.143 0.00 0.00 0.00 2.08
376 451 1.077334 CCCGAGTATCCCCTCACCTAT 59.923 57.143 0.00 0.00 0.00 2.57
377 452 0.481567 CCCGAGTATCCCCTCACCTA 59.518 60.000 0.00 0.00 0.00 3.08
378 453 1.233369 CCCGAGTATCCCCTCACCT 59.767 63.158 0.00 0.00 0.00 4.00
379 454 1.837499 CCCCGAGTATCCCCTCACC 60.837 68.421 0.00 0.00 0.00 4.02
380 455 1.837499 CCCCCGAGTATCCCCTCAC 60.837 68.421 0.00 0.00 0.00 3.51
381 456 2.016315 TCCCCCGAGTATCCCCTCA 61.016 63.158 0.00 0.00 0.00 3.86
382 457 1.228925 CTCCCCCGAGTATCCCCTC 60.229 68.421 0.00 0.00 0.00 4.30
383 458 2.944271 CTCCCCCGAGTATCCCCT 59.056 66.667 0.00 0.00 0.00 4.79
391 466 3.077556 CTCACCCACTCCCCCGAG 61.078 72.222 0.00 0.00 42.32 4.63
395 470 3.721706 CTGGCTCACCCACTCCCC 61.722 72.222 0.00 0.00 39.18 4.81
396 471 2.930562 ACTGGCTCACCCACTCCC 60.931 66.667 0.00 0.00 39.18 4.30
397 472 1.557269 ATCACTGGCTCACCCACTCC 61.557 60.000 0.00 0.00 39.18 3.85
398 473 0.326264 AATCACTGGCTCACCCACTC 59.674 55.000 0.00 0.00 39.18 3.51
399 474 0.037303 CAATCACTGGCTCACCCACT 59.963 55.000 0.00 0.00 39.18 4.00
400 475 0.250901 ACAATCACTGGCTCACCCAC 60.251 55.000 0.00 0.00 39.18 4.61
401 476 0.036732 GACAATCACTGGCTCACCCA 59.963 55.000 0.00 0.00 42.79 4.51
402 477 1.021390 CGACAATCACTGGCTCACCC 61.021 60.000 0.00 0.00 33.59 4.61
403 478 1.021390 CCGACAATCACTGGCTCACC 61.021 60.000 0.00 0.00 0.00 4.02
404 479 1.021390 CCCGACAATCACTGGCTCAC 61.021 60.000 0.00 0.00 0.00 3.51
405 480 1.296392 CCCGACAATCACTGGCTCA 59.704 57.895 0.00 0.00 0.00 4.26
406 481 1.450312 CCCCGACAATCACTGGCTC 60.450 63.158 0.00 0.00 0.00 4.70
407 482 1.488705 TTCCCCGACAATCACTGGCT 61.489 55.000 0.00 0.00 0.00 4.75
408 483 0.608035 TTTCCCCGACAATCACTGGC 60.608 55.000 0.00 0.00 0.00 4.85
409 484 1.453155 CTTTCCCCGACAATCACTGG 58.547 55.000 0.00 0.00 0.00 4.00
410 485 1.003118 TCCTTTCCCCGACAATCACTG 59.997 52.381 0.00 0.00 0.00 3.66
411 486 1.358152 TCCTTTCCCCGACAATCACT 58.642 50.000 0.00 0.00 0.00 3.41
412 487 2.420058 ATCCTTTCCCCGACAATCAC 57.580 50.000 0.00 0.00 0.00 3.06
413 488 3.118038 CCTTATCCTTTCCCCGACAATCA 60.118 47.826 0.00 0.00 0.00 2.57
414 489 3.118000 ACCTTATCCTTTCCCCGACAATC 60.118 47.826 0.00 0.00 0.00 2.67
415 490 2.850568 ACCTTATCCTTTCCCCGACAAT 59.149 45.455 0.00 0.00 0.00 2.71
416 491 2.271777 ACCTTATCCTTTCCCCGACAA 58.728 47.619 0.00 0.00 0.00 3.18
417 492 1.961133 ACCTTATCCTTTCCCCGACA 58.039 50.000 0.00 0.00 0.00 4.35
418 493 2.223900 CGTACCTTATCCTTTCCCCGAC 60.224 54.545 0.00 0.00 0.00 4.79
419 494 2.034124 CGTACCTTATCCTTTCCCCGA 58.966 52.381 0.00 0.00 0.00 5.14
420 495 1.539712 GCGTACCTTATCCTTTCCCCG 60.540 57.143 0.00 0.00 0.00 5.73
421 496 1.539712 CGCGTACCTTATCCTTTCCCC 60.540 57.143 0.00 0.00 0.00 4.81
422 497 1.410153 TCGCGTACCTTATCCTTTCCC 59.590 52.381 5.77 0.00 0.00 3.97
423 498 2.100418 ACTCGCGTACCTTATCCTTTCC 59.900 50.000 5.77 0.00 0.00 3.13
424 499 3.433513 ACTCGCGTACCTTATCCTTTC 57.566 47.619 5.77 0.00 0.00 2.62
425 500 4.989279 TTACTCGCGTACCTTATCCTTT 57.011 40.909 5.77 0.00 0.00 3.11
426 501 4.989279 TTTACTCGCGTACCTTATCCTT 57.011 40.909 5.77 0.00 0.00 3.36
427 502 4.989279 TTTTACTCGCGTACCTTATCCT 57.011 40.909 5.77 0.00 0.00 3.24
446 521 2.803852 GCAAATTCCCCCGAACGTTTTT 60.804 45.455 0.46 0.00 0.00 1.94
447 522 1.269883 GCAAATTCCCCCGAACGTTTT 60.270 47.619 0.46 0.00 0.00 2.43
448 523 0.315886 GCAAATTCCCCCGAACGTTT 59.684 50.000 0.46 0.00 0.00 3.60
449 524 1.529152 GGCAAATTCCCCCGAACGTT 61.529 55.000 0.00 0.00 0.00 3.99
450 525 1.974875 GGCAAATTCCCCCGAACGT 60.975 57.895 0.00 0.00 0.00 3.99
451 526 1.248101 AAGGCAAATTCCCCCGAACG 61.248 55.000 0.00 0.00 0.00 3.95
452 527 0.530744 GAAGGCAAATTCCCCCGAAC 59.469 55.000 0.00 0.00 0.00 3.95
453 528 0.113385 TGAAGGCAAATTCCCCCGAA 59.887 50.000 0.00 0.00 0.00 4.30
454 529 0.113385 TTGAAGGCAAATTCCCCCGA 59.887 50.000 0.00 0.00 0.00 5.14
455 530 0.246360 GTTGAAGGCAAATTCCCCCG 59.754 55.000 0.00 0.00 35.42 5.73
456 531 0.613260 GGTTGAAGGCAAATTCCCCC 59.387 55.000 0.00 0.00 35.42 5.40
457 532 0.613260 GGGTTGAAGGCAAATTCCCC 59.387 55.000 0.00 0.00 33.72 4.81
458 533 0.246360 CGGGTTGAAGGCAAATTCCC 59.754 55.000 0.00 0.00 35.51 3.97
459 534 1.253100 TCGGGTTGAAGGCAAATTCC 58.747 50.000 0.00 0.00 35.42 3.01
460 535 2.672714 GTTCGGGTTGAAGGCAAATTC 58.327 47.619 0.00 0.00 37.23 2.17
461 536 1.000717 CGTTCGGGTTGAAGGCAAATT 60.001 47.619 0.00 0.00 37.23 1.82
462 537 0.596082 CGTTCGGGTTGAAGGCAAAT 59.404 50.000 0.00 0.00 37.23 2.32
463 538 2.026522 CGTTCGGGTTGAAGGCAAA 58.973 52.632 0.00 0.00 37.23 3.68
464 539 3.739167 CGTTCGGGTTGAAGGCAA 58.261 55.556 0.00 0.00 37.23 4.52
467 542 2.663852 ACGCGTTCGGGTTGAAGG 60.664 61.111 5.58 0.00 43.64 3.46
468 543 2.664436 GGACGCGTTCGGGTTGAAG 61.664 63.158 15.53 0.00 37.23 3.02
469 544 2.662527 GGACGCGTTCGGGTTGAA 60.663 61.111 15.53 0.00 40.69 2.69
470 545 4.668118 GGGACGCGTTCGGGTTGA 62.668 66.667 15.53 0.00 40.69 3.18
471 546 4.675029 AGGGACGCGTTCGGGTTG 62.675 66.667 15.53 0.00 40.69 3.77
472 547 4.675029 CAGGGACGCGTTCGGGTT 62.675 66.667 15.53 0.00 40.69 4.11
476 551 4.143333 ATCCCAGGGACGCGTTCG 62.143 66.667 15.53 0.00 42.43 3.95
477 552 2.511600 CATCCCAGGGACGCGTTC 60.512 66.667 15.53 12.55 32.98 3.95
478 553 3.000819 TCATCCCAGGGACGCGTT 61.001 61.111 15.53 0.00 32.98 4.84
479 554 3.771160 GTCATCCCAGGGACGCGT 61.771 66.667 13.85 13.85 32.98 6.01
483 558 2.584608 CCACGTCATCCCAGGGAC 59.415 66.667 11.70 0.00 32.98 4.46
484 559 3.399181 GCCACGTCATCCCAGGGA 61.399 66.667 11.90 11.90 35.55 4.20
485 560 2.556840 ATTGCCACGTCATCCCAGGG 62.557 60.000 0.00 0.00 0.00 4.45
486 561 1.077501 ATTGCCACGTCATCCCAGG 60.078 57.895 0.00 0.00 0.00 4.45
487 562 1.378882 CCATTGCCACGTCATCCCAG 61.379 60.000 0.00 0.00 0.00 4.45
488 563 1.378382 CCATTGCCACGTCATCCCA 60.378 57.895 0.00 0.00 0.00 4.37
489 564 2.120909 CCCATTGCCACGTCATCCC 61.121 63.158 0.00 0.00 0.00 3.85
490 565 0.466189 ATCCCATTGCCACGTCATCC 60.466 55.000 0.00 0.00 0.00 3.51
491 566 1.873591 GTATCCCATTGCCACGTCATC 59.126 52.381 0.00 0.00 0.00 2.92
492 567 1.476833 GGTATCCCATTGCCACGTCAT 60.477 52.381 0.00 0.00 0.00 3.06
493 568 0.107410 GGTATCCCATTGCCACGTCA 60.107 55.000 0.00 0.00 0.00 4.35
494 569 0.107410 TGGTATCCCATTGCCACGTC 60.107 55.000 0.00 0.00 35.17 4.34
495 570 1.995274 TGGTATCCCATTGCCACGT 59.005 52.632 0.00 0.00 35.17 4.49
496 571 4.975132 TGGTATCCCATTGCCACG 57.025 55.556 0.00 0.00 35.17 4.94
505 580 2.808543 GCACGAATCTTGATGGTATCCC 59.191 50.000 0.00 0.00 0.00 3.85
506 581 3.466836 TGCACGAATCTTGATGGTATCC 58.533 45.455 0.00 0.00 0.00 2.59
507 582 4.550831 CGTTGCACGAATCTTGATGGTATC 60.551 45.833 3.04 0.00 46.05 2.24
508 583 3.309682 CGTTGCACGAATCTTGATGGTAT 59.690 43.478 3.04 0.00 46.05 2.73
509 584 2.670905 CGTTGCACGAATCTTGATGGTA 59.329 45.455 3.04 0.00 46.05 3.25
510 585 1.464608 CGTTGCACGAATCTTGATGGT 59.535 47.619 3.04 0.00 46.05 3.55
511 586 1.202065 CCGTTGCACGAATCTTGATGG 60.202 52.381 9.75 0.00 46.05 3.51
512 587 1.791555 GCCGTTGCACGAATCTTGATG 60.792 52.381 9.75 0.00 46.05 3.07
513 588 0.447801 GCCGTTGCACGAATCTTGAT 59.552 50.000 9.75 0.00 46.05 2.57
514 589 0.602638 AGCCGTTGCACGAATCTTGA 60.603 50.000 9.75 0.00 46.05 3.02
515 590 1.075542 TAGCCGTTGCACGAATCTTG 58.924 50.000 9.75 0.00 46.05 3.02
516 591 1.076332 GTAGCCGTTGCACGAATCTT 58.924 50.000 9.75 0.00 46.05 2.40
517 592 0.037697 TGTAGCCGTTGCACGAATCT 60.038 50.000 9.75 6.73 46.05 2.40
518 593 0.793861 TTGTAGCCGTTGCACGAATC 59.206 50.000 9.75 0.69 46.05 2.52
519 594 0.796312 CTTGTAGCCGTTGCACGAAT 59.204 50.000 9.75 1.89 46.05 3.34
520 595 1.837538 GCTTGTAGCCGTTGCACGAA 61.838 55.000 9.75 0.00 46.05 3.85
521 596 2.314647 GCTTGTAGCCGTTGCACGA 61.315 57.895 9.75 0.00 46.05 4.35
522 597 2.173382 GCTTGTAGCCGTTGCACG 59.827 61.111 0.00 0.00 42.11 5.34
523 598 1.082104 GTGCTTGTAGCCGTTGCAC 60.082 57.895 0.00 0.00 45.23 4.57
524 599 2.603247 CGTGCTTGTAGCCGTTGCA 61.603 57.895 0.00 0.00 41.51 4.08
525 600 2.173382 CGTGCTTGTAGCCGTTGC 59.827 61.111 0.00 0.00 41.51 4.17
526 601 3.637714 ACGTGCTTGTAGCCGTTG 58.362 55.556 8.63 0.00 42.42 4.10
527 602 4.449391 AACGTGCTTGTAGCCGTT 57.551 50.000 16.54 16.54 45.82 4.44
528 603 2.019951 CGAACGTGCTTGTAGCCGT 61.020 57.895 8.63 8.63 45.24 5.68
529 604 2.726691 CCGAACGTGCTTGTAGCCG 61.727 63.158 0.00 7.63 41.51 5.52
530 605 3.023591 GCCGAACGTGCTTGTAGCC 62.024 63.158 0.00 0.00 41.51 3.93
531 606 2.027625 AGCCGAACGTGCTTGTAGC 61.028 57.895 0.00 0.00 42.82 3.58
532 607 1.781555 CAGCCGAACGTGCTTGTAG 59.218 57.895 0.00 0.00 36.81 2.74
533 608 2.314647 GCAGCCGAACGTGCTTGTA 61.315 57.895 0.00 0.00 36.81 2.41
534 609 3.649986 GCAGCCGAACGTGCTTGT 61.650 61.111 0.00 0.00 36.81 3.16
535 610 3.584250 CTGCAGCCGAACGTGCTTG 62.584 63.158 0.00 0.00 40.54 4.01
536 611 3.349006 CTGCAGCCGAACGTGCTT 61.349 61.111 0.00 0.00 40.54 3.91
539 614 3.414700 GACCTGCAGCCGAACGTG 61.415 66.667 8.66 0.00 0.00 4.49
540 615 4.681978 GGACCTGCAGCCGAACGT 62.682 66.667 8.66 0.00 0.00 3.99
541 616 4.680237 TGGACCTGCAGCCGAACG 62.680 66.667 8.66 0.00 0.00 3.95
542 617 2.731691 TTCTGGACCTGCAGCCGAAC 62.732 60.000 8.66 0.00 0.00 3.95
543 618 2.050836 TTTCTGGACCTGCAGCCGAA 62.051 55.000 8.66 10.21 0.00 4.30
544 619 2.050836 TTTTCTGGACCTGCAGCCGA 62.051 55.000 8.66 4.68 0.00 5.54
545 620 0.962356 ATTTTCTGGACCTGCAGCCG 60.962 55.000 8.66 0.00 0.00 5.52
546 621 0.813821 GATTTTCTGGACCTGCAGCC 59.186 55.000 8.66 5.73 0.00 4.85
547 622 0.813821 GGATTTTCTGGACCTGCAGC 59.186 55.000 8.66 0.00 0.00 5.25
548 623 1.089920 CGGATTTTCTGGACCTGCAG 58.910 55.000 6.78 6.78 0.00 4.41
549 624 0.690192 TCGGATTTTCTGGACCTGCA 59.310 50.000 0.00 0.00 0.00 4.41
550 625 1.821216 TTCGGATTTTCTGGACCTGC 58.179 50.000 0.00 0.00 0.00 4.85
551 626 3.347216 ACATTCGGATTTTCTGGACCTG 58.653 45.455 0.00 0.00 0.00 4.00
552 627 3.721087 ACATTCGGATTTTCTGGACCT 57.279 42.857 0.00 0.00 0.00 3.85
553 628 3.181510 CGAACATTCGGATTTTCTGGACC 60.182 47.826 6.11 0.00 46.30 4.46
554 629 4.003519 CGAACATTCGGATTTTCTGGAC 57.996 45.455 6.11 0.00 46.30 4.02
567 642 3.242316 GGAACGATAACTGCCGAACATTC 60.242 47.826 0.00 0.00 0.00 2.67
568 643 2.676342 GGAACGATAACTGCCGAACATT 59.324 45.455 0.00 0.00 0.00 2.71
569 644 2.277084 GGAACGATAACTGCCGAACAT 58.723 47.619 0.00 0.00 0.00 2.71
570 645 1.673626 GGGAACGATAACTGCCGAACA 60.674 52.381 0.00 0.00 0.00 3.18
571 646 1.004595 GGGAACGATAACTGCCGAAC 58.995 55.000 0.00 0.00 0.00 3.95
572 647 3.446507 GGGAACGATAACTGCCGAA 57.553 52.632 0.00 0.00 0.00 4.30
585 660 7.818997 AAATCTCCCTTTAATAATCGGGAAC 57.181 36.000 10.51 0.00 44.67 3.62
586 661 8.056400 TCAAAATCTCCCTTTAATAATCGGGAA 58.944 33.333 10.51 4.65 44.67 3.97
587 662 7.579105 TCAAAATCTCCCTTTAATAATCGGGA 58.421 34.615 9.36 9.36 43.24 5.14
588 663 7.817418 TCAAAATCTCCCTTTAATAATCGGG 57.183 36.000 2.51 2.51 38.07 5.14
589 664 9.683069 CAATCAAAATCTCCCTTTAATAATCGG 57.317 33.333 0.00 0.00 0.00 4.18
865 982 3.458163 GCGATGGAGGGACGGACA 61.458 66.667 0.00 0.00 0.00 4.02
869 986 3.559657 GATCGGCGATGGAGGGACG 62.560 68.421 29.20 0.00 0.00 4.79
870 987 2.340443 GATCGGCGATGGAGGGAC 59.660 66.667 29.20 6.95 0.00 4.46
871 988 2.917751 GGATCGGCGATGGAGGGA 60.918 66.667 29.20 0.00 0.00 4.20
872 989 2.513026 GATGGATCGGCGATGGAGGG 62.513 65.000 29.20 0.00 0.00 4.30
873 990 1.079543 GATGGATCGGCGATGGAGG 60.080 63.158 29.20 0.00 0.00 4.30
874 991 1.079543 GGATGGATCGGCGATGGAG 60.080 63.158 29.20 0.00 0.00 3.86
875 992 1.194121 ATGGATGGATCGGCGATGGA 61.194 55.000 29.20 13.55 0.00 3.41
876 993 1.022982 CATGGATGGATCGGCGATGG 61.023 60.000 29.20 2.34 0.00 3.51
877 994 0.037046 TCATGGATGGATCGGCGATG 60.037 55.000 29.20 11.99 0.00 3.84
878 995 0.036952 GTCATGGATGGATCGGCGAT 60.037 55.000 24.26 24.26 0.00 4.58
879 996 1.367471 GTCATGGATGGATCGGCGA 59.633 57.895 13.87 13.87 0.00 5.54
880 997 0.321034 ATGTCATGGATGGATCGGCG 60.321 55.000 0.00 0.00 0.00 6.46
881 998 1.162698 CATGTCATGGATGGATCGGC 58.837 55.000 4.78 0.00 0.00 5.54
882 999 2.038164 AGTCATGTCATGGATGGATCGG 59.962 50.000 12.90 0.00 0.00 4.18
1166 1453 3.592814 TACTGATCCGCGGCCGAG 61.593 66.667 33.48 28.06 36.29 4.63
1240 1536 1.969064 TTGCCGGTGGTCATTTCCG 60.969 57.895 1.90 0.00 43.30 4.30
1819 2209 2.435059 GCACCTTCCGACTCCTGC 60.435 66.667 0.00 0.00 0.00 4.85
2094 3908 2.875933 TCGTTGAACAACTGATCCAACC 59.124 45.455 14.31 0.00 39.08 3.77
2114 3928 5.123805 ACTACGGACTGTTTCTTCTTCTC 57.876 43.478 0.00 0.00 0.00 2.87
2185 4005 9.878599 CTTGTTCAAATTCTAATCTACGTGTTT 57.121 29.630 0.00 0.00 0.00 2.83
2186 4006 9.268268 TCTTGTTCAAATTCTAATCTACGTGTT 57.732 29.630 0.00 0.00 0.00 3.32
2187 4007 8.827177 TCTTGTTCAAATTCTAATCTACGTGT 57.173 30.769 0.00 0.00 0.00 4.49
2196 4016 9.866655 AGCCCATATATCTTGTTCAAATTCTAA 57.133 29.630 0.00 0.00 0.00 2.10
2197 4017 9.288576 CAGCCCATATATCTTGTTCAAATTCTA 57.711 33.333 0.00 0.00 0.00 2.10
2198 4018 7.255730 GCAGCCCATATATCTTGTTCAAATTCT 60.256 37.037 0.00 0.00 0.00 2.40
2199 4019 6.865205 GCAGCCCATATATCTTGTTCAAATTC 59.135 38.462 0.00 0.00 0.00 2.17
2249 4074 2.202987 CATCTCCGCCACTGCTCC 60.203 66.667 0.00 0.00 34.43 4.70
2255 4080 2.902705 TATTACACCATCTCCGCCAC 57.097 50.000 0.00 0.00 0.00 5.01
2274 4108 4.421948 CCTTTAATGTCTCTACGCGTCTT 58.578 43.478 18.63 0.00 0.00 3.01
2283 4117 6.597280 GTCATCTTCTTGCCTTTAATGTCTCT 59.403 38.462 0.00 0.00 0.00 3.10
2333 4211 1.074951 CCTTGTTTCTCGCCCCCTT 59.925 57.895 0.00 0.00 0.00 3.95
2377 4255 2.515057 TCAAACACGCCGCCAAGT 60.515 55.556 0.00 0.00 0.00 3.16
2425 4340 2.214376 ATCCGCCCATTTCTCAAACA 57.786 45.000 0.00 0.00 0.00 2.83
2472 4387 1.530655 CCCCCGCTTTCCAGTTGTT 60.531 57.895 0.00 0.00 0.00 2.83
2481 4396 1.134068 GCTCTATCTTTCCCCCGCTTT 60.134 52.381 0.00 0.00 0.00 3.51
2485 4400 0.682292 GGAGCTCTATCTTTCCCCCG 59.318 60.000 14.64 0.00 0.00 5.73
2502 4419 2.617788 CGTTGGGTTGGATCTGAATGGA 60.618 50.000 0.00 0.00 0.00 3.41
2633 4789 4.645136 GGAAACAAACACCTTCTTTCTCCT 59.355 41.667 0.00 0.00 0.00 3.69
2698 4855 5.927954 GCAATTGCTGGATCTTTCAAAAA 57.072 34.783 23.21 0.00 38.21 1.94
2714 4871 2.809119 TGCAATGAAAAGCCAGCAATTG 59.191 40.909 0.00 0.00 0.00 2.32
2715 4872 3.128852 TGCAATGAAAAGCCAGCAATT 57.871 38.095 0.00 0.00 0.00 2.32
2717 4874 2.843401 ATGCAATGAAAAGCCAGCAA 57.157 40.000 0.00 0.00 35.45 3.91
2718 4875 2.843401 AATGCAATGAAAAGCCAGCA 57.157 40.000 0.00 0.00 36.34 4.41
2719 4876 2.606272 GCTAATGCAATGAAAAGCCAGC 59.394 45.455 0.00 0.00 39.41 4.85
2738 5303 1.130054 TTCTCCCACTGCTTCCTGCT 61.130 55.000 0.00 0.00 43.37 4.24
2739 5304 0.250901 TTTCTCCCACTGCTTCCTGC 60.251 55.000 0.00 0.00 43.25 4.85
2740 5305 2.276732 TTTTCTCCCACTGCTTCCTG 57.723 50.000 0.00 0.00 0.00 3.86
2741 5306 2.091885 TGTTTTTCTCCCACTGCTTCCT 60.092 45.455 0.00 0.00 0.00 3.36
2742 5307 2.306847 TGTTTTTCTCCCACTGCTTCC 58.693 47.619 0.00 0.00 0.00 3.46
2743 5308 3.569701 TCATGTTTTTCTCCCACTGCTTC 59.430 43.478 0.00 0.00 0.00 3.86
2744 5309 3.565307 TCATGTTTTTCTCCCACTGCTT 58.435 40.909 0.00 0.00 0.00 3.91
2745 5310 3.152341 CTCATGTTTTTCTCCCACTGCT 58.848 45.455 0.00 0.00 0.00 4.24
2746 5311 2.229784 CCTCATGTTTTTCTCCCACTGC 59.770 50.000 0.00 0.00 0.00 4.40
2747 5312 2.821969 CCCTCATGTTTTTCTCCCACTG 59.178 50.000 0.00 0.00 0.00 3.66
2748 5313 2.225117 CCCCTCATGTTTTTCTCCCACT 60.225 50.000 0.00 0.00 0.00 4.00
2749 5314 2.171003 CCCCTCATGTTTTTCTCCCAC 58.829 52.381 0.00 0.00 0.00 4.61
2750 5315 1.077005 CCCCCTCATGTTTTTCTCCCA 59.923 52.381 0.00 0.00 0.00 4.37
2751 5316 1.077169 ACCCCCTCATGTTTTTCTCCC 59.923 52.381 0.00 0.00 0.00 4.30
2752 5317 2.604912 ACCCCCTCATGTTTTTCTCC 57.395 50.000 0.00 0.00 0.00 3.71
2753 5318 3.496331 TGAACCCCCTCATGTTTTTCTC 58.504 45.455 0.00 0.00 0.00 2.87
2754 5319 3.500343 CTGAACCCCCTCATGTTTTTCT 58.500 45.455 0.00 0.00 0.00 2.52
2755 5320 2.562738 CCTGAACCCCCTCATGTTTTTC 59.437 50.000 0.00 0.00 0.00 2.29
2756 5321 2.090775 ACCTGAACCCCCTCATGTTTTT 60.091 45.455 0.00 0.00 0.00 1.94
2757 5322 1.503347 ACCTGAACCCCCTCATGTTTT 59.497 47.619 0.00 0.00 0.00 2.43
2758 5323 1.075536 GACCTGAACCCCCTCATGTTT 59.924 52.381 0.00 0.00 0.00 2.83
2759 5324 0.698818 GACCTGAACCCCCTCATGTT 59.301 55.000 0.00 0.00 0.00 2.71
2760 5325 1.208165 GGACCTGAACCCCCTCATGT 61.208 60.000 0.00 0.00 0.00 3.21
2776 5341 1.481363 GCCTGTACTTGGTCCTAGGAC 59.519 57.143 30.72 30.72 43.87 3.85
2777 5342 1.621622 GGCCTGTACTTGGTCCTAGGA 60.622 57.143 7.62 7.62 0.00 2.94
2778 5343 0.831307 GGCCTGTACTTGGTCCTAGG 59.169 60.000 0.82 0.82 0.00 3.02
2779 5344 1.757699 GAGGCCTGTACTTGGTCCTAG 59.242 57.143 12.00 0.00 33.46 3.02
2781 5346 0.178903 TGAGGCCTGTACTTGGTCCT 60.179 55.000 12.00 15.37 35.09 3.85
2782 5347 0.912486 ATGAGGCCTGTACTTGGTCC 59.088 55.000 12.00 0.00 0.00 4.46
2783 5348 1.279271 ACATGAGGCCTGTACTTGGTC 59.721 52.381 12.00 0.00 0.00 4.02
2784 5349 1.362224 ACATGAGGCCTGTACTTGGT 58.638 50.000 12.00 0.00 0.00 3.67
2785 5350 2.496899 AACATGAGGCCTGTACTTGG 57.503 50.000 12.00 0.00 0.00 3.61
2786 5351 4.336433 CCATAAACATGAGGCCTGTACTTG 59.664 45.833 12.00 7.17 0.00 3.16
2787 5352 4.018415 ACCATAAACATGAGGCCTGTACTT 60.018 41.667 12.00 0.00 0.00 2.24
2788 5353 3.523564 ACCATAAACATGAGGCCTGTACT 59.476 43.478 12.00 0.00 0.00 2.73
2789 5354 3.886123 ACCATAAACATGAGGCCTGTAC 58.114 45.455 12.00 0.00 0.00 2.90
2790 5355 4.584638 AACCATAAACATGAGGCCTGTA 57.415 40.909 12.00 0.00 0.00 2.74
2791 5356 3.456380 AACCATAAACATGAGGCCTGT 57.544 42.857 12.00 0.00 0.00 4.00
2792 5357 5.163519 CCTTAAACCATAAACATGAGGCCTG 60.164 44.000 12.00 0.00 0.00 4.85
2793 5358 4.956075 CCTTAAACCATAAACATGAGGCCT 59.044 41.667 3.86 3.86 0.00 5.19
2794 5359 4.099419 CCCTTAAACCATAAACATGAGGCC 59.901 45.833 0.00 0.00 0.00 5.19
2796 5361 4.649218 CCCCCTTAAACCATAAACATGAGG 59.351 45.833 0.00 0.00 0.00 3.86
2798 5363 5.015817 ACTCCCCCTTAAACCATAAACATGA 59.984 40.000 0.00 0.00 0.00 3.07
2802 5367 5.192321 TCCTACTCCCCCTTAAACCATAAAC 59.808 44.000 0.00 0.00 0.00 2.01
2804 5369 4.723285 GTCCTACTCCCCCTTAAACCATAA 59.277 45.833 0.00 0.00 0.00 1.90
2805 5370 4.014973 AGTCCTACTCCCCCTTAAACCATA 60.015 45.833 0.00 0.00 0.00 2.74
2806 5371 3.120898 GTCCTACTCCCCCTTAAACCAT 58.879 50.000 0.00 0.00 0.00 3.55
2807 5372 2.114871 AGTCCTACTCCCCCTTAAACCA 59.885 50.000 0.00 0.00 0.00 3.67
2808 5373 2.770802 GAGTCCTACTCCCCCTTAAACC 59.229 54.545 0.00 0.00 39.28 3.27
2856 5421 3.474570 CAAGGGAGGGAGAGGCGG 61.475 72.222 0.00 0.00 0.00 6.13
2857 5422 4.168291 GCAAGGGAGGGAGAGGCG 62.168 72.222 0.00 0.00 0.00 5.52
2858 5423 2.690510 AGCAAGGGAGGGAGAGGC 60.691 66.667 0.00 0.00 0.00 4.70
2861 5426 0.178861 AAAGGAGCAAGGGAGGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
2862 5427 1.584724 TAAAGGAGCAAGGGAGGGAG 58.415 55.000 0.00 0.00 0.00 4.30
2863 5428 2.286935 ATAAAGGAGCAAGGGAGGGA 57.713 50.000 0.00 0.00 0.00 4.20
2864 5429 4.322801 CGTATATAAAGGAGCAAGGGAGGG 60.323 50.000 0.00 0.00 0.00 4.30
2865 5430 4.322801 CCGTATATAAAGGAGCAAGGGAGG 60.323 50.000 0.37 0.00 0.00 4.30
2867 5432 3.581332 CCCGTATATAAAGGAGCAAGGGA 59.419 47.826 7.00 0.00 37.37 4.20
2868 5433 3.307480 CCCCGTATATAAAGGAGCAAGGG 60.307 52.174 7.00 0.00 35.10 3.95
2869 5434 3.307480 CCCCCGTATATAAAGGAGCAAGG 60.307 52.174 7.00 0.86 0.00 3.61
2872 5437 1.626825 GCCCCCGTATATAAAGGAGCA 59.373 52.381 7.00 0.00 0.00 4.26
2873 5438 1.626825 TGCCCCCGTATATAAAGGAGC 59.373 52.381 7.00 9.17 0.00 4.70
2874 5439 2.236395 CCTGCCCCCGTATATAAAGGAG 59.764 54.545 7.00 0.00 0.00 3.69
2875 5440 2.262637 CCTGCCCCCGTATATAAAGGA 58.737 52.381 7.00 0.00 0.00 3.36
2877 5442 1.280998 CCCCTGCCCCCGTATATAAAG 59.719 57.143 0.00 0.00 0.00 1.85
2878 5443 1.364269 CCCCTGCCCCCGTATATAAA 58.636 55.000 0.00 0.00 0.00 1.40
2880 5445 1.614226 GCCCCTGCCCCCGTATATA 60.614 63.158 0.00 0.00 0.00 0.86
2881 5446 2.933834 GCCCCTGCCCCCGTATAT 60.934 66.667 0.00 0.00 0.00 0.86
2882 5447 4.500826 TGCCCCTGCCCCCGTATA 62.501 66.667 0.00 0.00 36.33 1.47
2895 5460 0.107165 GTTCTGTCTATGGGGTGCCC 60.107 60.000 0.00 0.00 45.71 5.36
2896 5461 0.618458 TGTTCTGTCTATGGGGTGCC 59.382 55.000 0.00 0.00 0.00 5.01
2897 5462 2.489938 TTGTTCTGTCTATGGGGTGC 57.510 50.000 0.00 0.00 0.00 5.01
2898 5463 4.588899 TCAATTGTTCTGTCTATGGGGTG 58.411 43.478 5.13 0.00 0.00 4.61
2899 5464 4.927267 TCAATTGTTCTGTCTATGGGGT 57.073 40.909 5.13 0.00 0.00 4.95
2900 5465 5.688807 AGATCAATTGTTCTGTCTATGGGG 58.311 41.667 16.49 0.00 0.00 4.96
2901 5466 6.590068 AGAGATCAATTGTTCTGTCTATGGG 58.410 40.000 21.03 0.00 0.00 4.00
2902 5467 7.767659 TCAAGAGATCAATTGTTCTGTCTATGG 59.232 37.037 21.03 6.89 0.00 2.74
2903 5468 8.713737 TCAAGAGATCAATTGTTCTGTCTATG 57.286 34.615 21.03 13.26 0.00 2.23
2921 5486 3.129462 CACACGGCTAAGAGATCAAGAGA 59.871 47.826 0.00 0.00 0.00 3.10
2922 5487 3.443037 CACACGGCTAAGAGATCAAGAG 58.557 50.000 0.00 0.00 0.00 2.85
2924 5489 1.929836 GCACACGGCTAAGAGATCAAG 59.070 52.381 0.00 0.00 40.25 3.02
2925 5490 1.735700 CGCACACGGCTAAGAGATCAA 60.736 52.381 0.00 0.00 41.67 2.57
2926 5491 0.179137 CGCACACGGCTAAGAGATCA 60.179 55.000 0.00 0.00 41.67 2.92
2927 5492 2.582959 CGCACACGGCTAAGAGATC 58.417 57.895 0.00 0.00 41.67 2.75
2928 5493 4.814900 CGCACACGGCTAAGAGAT 57.185 55.556 0.00 0.00 41.67 2.75
2946 5511 0.178990 GATTATGGTGGAGGGGGCAC 60.179 60.000 0.00 0.00 0.00 5.01
2947 5512 1.360393 GGATTATGGTGGAGGGGGCA 61.360 60.000 0.00 0.00 0.00 5.36
2948 5513 1.360393 TGGATTATGGTGGAGGGGGC 61.360 60.000 0.00 0.00 0.00 5.80
2949 5514 0.478507 GTGGATTATGGTGGAGGGGG 59.521 60.000 0.00 0.00 0.00 5.40
2950 5515 0.478507 GGTGGATTATGGTGGAGGGG 59.521 60.000 0.00 0.00 0.00 4.79
2951 5516 1.421646 GAGGTGGATTATGGTGGAGGG 59.578 57.143 0.00 0.00 0.00 4.30
2952 5517 1.070758 CGAGGTGGATTATGGTGGAGG 59.929 57.143 0.00 0.00 0.00 4.30
2953 5518 2.039418 TCGAGGTGGATTATGGTGGAG 58.961 52.381 0.00 0.00 0.00 3.86
2954 5519 2.168458 TCGAGGTGGATTATGGTGGA 57.832 50.000 0.00 0.00 0.00 4.02
2955 5520 4.617253 TTATCGAGGTGGATTATGGTGG 57.383 45.455 0.00 0.00 0.00 4.61
2956 5521 7.555965 TGATATTATCGAGGTGGATTATGGTG 58.444 38.462 0.00 0.00 0.00 4.17
2957 5522 7.733773 TGATATTATCGAGGTGGATTATGGT 57.266 36.000 0.00 0.00 0.00 3.55
2958 5523 9.920133 CTATGATATTATCGAGGTGGATTATGG 57.080 37.037 0.00 0.00 0.00 2.74
2961 5526 8.414003 GCACTATGATATTATCGAGGTGGATTA 58.586 37.037 16.76 0.00 0.00 1.75
2963 5528 6.609212 AGCACTATGATATTATCGAGGTGGAT 59.391 38.462 16.76 2.32 0.00 3.41
2964 5529 5.952347 AGCACTATGATATTATCGAGGTGGA 59.048 40.000 16.76 0.00 0.00 4.02
2965 5530 6.038985 CAGCACTATGATATTATCGAGGTGG 58.961 44.000 16.76 6.97 0.00 4.61
2967 5532 5.420421 AGCAGCACTATGATATTATCGAGGT 59.580 40.000 0.00 1.80 0.00 3.85
2968 5533 5.900425 AGCAGCACTATGATATTATCGAGG 58.100 41.667 0.00 1.33 0.00 4.63
2969 5534 7.647318 CCTAAGCAGCACTATGATATTATCGAG 59.353 40.741 0.00 2.39 0.00 4.04
2970 5535 7.484140 CCTAAGCAGCACTATGATATTATCGA 58.516 38.462 0.00 0.00 0.00 3.59
2971 5536 6.199908 GCCTAAGCAGCACTATGATATTATCG 59.800 42.308 0.00 0.00 39.53 2.92
2972 5537 6.199908 CGCCTAAGCAGCACTATGATATTATC 59.800 42.308 0.00 0.00 39.83 1.75
2973 5538 6.045318 CGCCTAAGCAGCACTATGATATTAT 58.955 40.000 0.00 0.00 39.83 1.28
2974 5539 5.185056 TCGCCTAAGCAGCACTATGATATTA 59.815 40.000 0.00 0.00 39.83 0.98
2975 5540 4.021104 TCGCCTAAGCAGCACTATGATATT 60.021 41.667 0.00 0.00 39.83 1.28
2976 5541 3.511540 TCGCCTAAGCAGCACTATGATAT 59.488 43.478 0.00 0.00 39.83 1.63
2977 5542 2.890945 TCGCCTAAGCAGCACTATGATA 59.109 45.455 0.00 0.00 39.83 2.15
2978 5543 1.688735 TCGCCTAAGCAGCACTATGAT 59.311 47.619 0.00 0.00 39.83 2.45
2980 5545 1.863454 CTTCGCCTAAGCAGCACTATG 59.137 52.381 0.00 0.00 39.83 2.23
2981 5546 2.231215 CTTCGCCTAAGCAGCACTAT 57.769 50.000 0.00 0.00 39.83 2.12
2982 5547 3.741029 CTTCGCCTAAGCAGCACTA 57.259 52.632 0.00 0.00 39.83 2.74
2983 5548 4.606071 CTTCGCCTAAGCAGCACT 57.394 55.556 0.00 0.00 39.83 4.40
2996 5561 4.124351 TACCGACGCAGGGCTTCG 62.124 66.667 9.73 9.73 47.00 3.79
2997 5562 2.202756 CTACCGACGCAGGGCTTC 60.203 66.667 1.73 0.00 35.02 3.86
2998 5563 2.280552 TTCTACCGACGCAGGGCTT 61.281 57.895 1.73 0.00 35.02 4.35
3000 5565 2.508663 GTTCTACCGACGCAGGGC 60.509 66.667 1.73 0.00 35.02 5.19
3001 5566 0.527817 GATGTTCTACCGACGCAGGG 60.528 60.000 1.73 0.00 35.02 4.45
3002 5567 0.172578 TGATGTTCTACCGACGCAGG 59.827 55.000 0.00 0.00 37.30 4.85
3003 5568 2.120232 GATGATGTTCTACCGACGCAG 58.880 52.381 0.00 0.00 0.00 5.18
3004 5569 1.474879 TGATGATGTTCTACCGACGCA 59.525 47.619 0.00 0.00 0.00 5.24
3006 5571 2.973879 CGATGATGATGTTCTACCGACG 59.026 50.000 0.00 0.00 0.00 5.12
3008 5573 3.630312 TGACGATGATGATGTTCTACCGA 59.370 43.478 0.00 0.00 0.00 4.69
3009 5574 3.731216 GTGACGATGATGATGTTCTACCG 59.269 47.826 0.00 0.00 0.00 4.02
3010 5575 4.051922 GGTGACGATGATGATGTTCTACC 58.948 47.826 0.00 0.00 0.00 3.18
3012 5577 5.291971 CATGGTGACGATGATGATGTTCTA 58.708 41.667 0.94 0.00 0.00 2.10
3014 5579 3.303593 GCATGGTGACGATGATGATGTTC 60.304 47.826 11.88 0.00 0.00 3.18
3017 5582 2.223377 CAGCATGGTGACGATGATGATG 59.777 50.000 18.87 3.61 37.40 3.07
3018 5583 2.158856 ACAGCATGGTGACGATGATGAT 60.159 45.455 27.83 12.40 43.62 2.45
3019 5584 1.207811 ACAGCATGGTGACGATGATGA 59.792 47.619 27.83 0.00 43.62 2.92
3020 5585 1.596260 GACAGCATGGTGACGATGATG 59.404 52.381 30.46 21.30 43.62 3.07
3022 5587 0.607620 TGACAGCATGGTGACGATGA 59.392 50.000 30.46 6.47 43.62 2.92
3023 5588 1.329599 CATGACAGCATGGTGACGATG 59.670 52.381 30.46 22.36 46.45 3.84
3024 5589 1.660167 CATGACAGCATGGTGACGAT 58.340 50.000 30.46 16.51 46.45 3.73
3025 5590 3.142124 CATGACAGCATGGTGACGA 57.858 52.632 30.46 15.11 46.45 4.20
3039 5604 0.532573 GGAGAGTTCCGTCAGCATGA 59.467 55.000 0.00 0.00 36.78 3.07
3040 5605 0.460987 GGGAGAGTTCCGTCAGCATG 60.461 60.000 0.00 0.00 45.04 4.06
3041 5606 0.616111 AGGGAGAGTTCCGTCAGCAT 60.616 55.000 0.00 0.00 45.04 3.79
3042 5607 1.228894 AGGGAGAGTTCCGTCAGCA 60.229 57.895 0.00 0.00 45.04 4.41
3043 5608 3.701454 AGGGAGAGTTCCGTCAGC 58.299 61.111 0.00 0.00 45.04 4.26
3047 5612 0.321996 GCTTTGAGGGAGAGTTCCGT 59.678 55.000 0.00 0.00 45.04 4.69
3048 5613 0.610687 AGCTTTGAGGGAGAGTTCCG 59.389 55.000 0.00 0.00 45.04 4.30
3049 5614 1.625818 TGAGCTTTGAGGGAGAGTTCC 59.374 52.381 0.00 0.00 43.23 3.62
3052 5617 0.612744 GCTGAGCTTTGAGGGAGAGT 59.387 55.000 0.00 0.00 0.00 3.24
3053 5618 0.903942 AGCTGAGCTTTGAGGGAGAG 59.096 55.000 0.00 0.00 33.89 3.20
3054 5619 0.612229 CAGCTGAGCTTTGAGGGAGA 59.388 55.000 8.42 0.00 36.40 3.71
3055 5620 0.392729 CCAGCTGAGCTTTGAGGGAG 60.393 60.000 17.39 0.00 36.40 4.30
3056 5621 0.837691 TCCAGCTGAGCTTTGAGGGA 60.838 55.000 17.39 5.11 36.40 4.20
3057 5622 0.255318 ATCCAGCTGAGCTTTGAGGG 59.745 55.000 17.39 2.19 36.40 4.30
3058 5623 1.666054 GATCCAGCTGAGCTTTGAGG 58.334 55.000 17.39 2.64 36.40 3.86
3059 5624 1.288350 CGATCCAGCTGAGCTTTGAG 58.712 55.000 17.39 0.00 36.40 3.02
3060 5625 0.107993 CCGATCCAGCTGAGCTTTGA 60.108 55.000 17.39 4.88 36.40 2.69
3061 5626 0.107993 TCCGATCCAGCTGAGCTTTG 60.108 55.000 17.39 0.00 36.40 2.77
3062 5627 0.177604 CTCCGATCCAGCTGAGCTTT 59.822 55.000 17.39 0.00 36.40 3.51
3063 5628 0.975040 ACTCCGATCCAGCTGAGCTT 60.975 55.000 17.39 0.00 36.40 3.74
3064 5629 0.975040 AACTCCGATCCAGCTGAGCT 60.975 55.000 17.39 0.00 40.77 4.09
3065 5630 0.529555 GAACTCCGATCCAGCTGAGC 60.530 60.000 17.39 0.00 0.00 4.26
3067 5632 0.679960 TCGAACTCCGATCCAGCTGA 60.680 55.000 17.39 1.21 43.23 4.26
3068 5633 1.809869 TCGAACTCCGATCCAGCTG 59.190 57.895 6.78 6.78 43.23 4.24
3069 5634 4.338815 TCGAACTCCGATCCAGCT 57.661 55.556 0.00 0.00 43.23 4.24
3076 5641 2.033141 ACGTCCCTCGAACTCCGA 59.967 61.111 1.88 0.00 46.35 4.55
3077 5642 1.654954 ATGACGTCCCTCGAACTCCG 61.655 60.000 14.12 0.00 42.86 4.63
3079 5644 0.248134 CGATGACGTCCCTCGAACTC 60.248 60.000 24.99 5.48 42.86 3.01
3081 5646 4.379221 CGATGACGTCCCTCGAAC 57.621 61.111 24.99 1.58 42.86 3.95
3099 5664 0.461870 AGTTCAGCACACGTTCAGCA 60.462 50.000 6.43 0.00 0.00 4.41
3102 5667 0.874175 CCGAGTTCAGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
3104 5669 0.597637 CTCCGAGTTCAGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
3105 5670 1.007271 CTCCGAGTTCAGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
3106 5671 1.734477 CCTCCGAGTTCAGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
3108 5673 1.367471 CACCTCCGAGTTCAGCACA 59.633 57.895 0.00 0.00 0.00 4.57
3109 5674 0.667792 GACACCTCCGAGTTCAGCAC 60.668 60.000 0.00 0.00 0.00 4.40
3110 5675 1.666011 GACACCTCCGAGTTCAGCA 59.334 57.895 0.00 0.00 0.00 4.41
3112 5677 0.387367 CACGACACCTCCGAGTTCAG 60.387 60.000 0.00 0.00 0.00 3.02
3113 5678 1.658114 CACGACACCTCCGAGTTCA 59.342 57.895 0.00 0.00 0.00 3.18
3114 5679 1.733399 GCACGACACCTCCGAGTTC 60.733 63.158 0.00 0.00 0.00 3.01
3115 5680 2.338984 GCACGACACCTCCGAGTT 59.661 61.111 0.00 0.00 0.00 3.01
3116 5681 4.039357 CGCACGACACCTCCGAGT 62.039 66.667 0.00 0.00 0.00 4.18
3117 5682 3.553437 AACGCACGACACCTCCGAG 62.553 63.158 0.00 0.00 0.00 4.63
3119 5684 3.103911 GAACGCACGACACCTCCG 61.104 66.667 0.00 0.00 0.00 4.63
3120 5685 3.103911 CGAACGCACGACACCTCC 61.104 66.667 0.00 0.00 35.09 4.30
3123 5688 2.050168 TACCGAACGCACGACACC 60.050 61.111 0.00 0.00 35.09 4.16
3124 5689 0.936297 AAGTACCGAACGCACGACAC 60.936 55.000 0.00 1.68 35.09 3.67
3126 5691 0.661187 TCAAGTACCGAACGCACGAC 60.661 55.000 0.00 0.00 35.09 4.34
3127 5692 0.241749 ATCAAGTACCGAACGCACGA 59.758 50.000 0.00 0.00 35.09 4.35
3128 5693 0.638746 GATCAAGTACCGAACGCACG 59.361 55.000 0.00 0.00 0.00 5.34
3129 5694 0.638746 CGATCAAGTACCGAACGCAC 59.361 55.000 0.00 0.00 0.00 5.34
3130 5695 0.457166 CCGATCAAGTACCGAACGCA 60.457 55.000 6.95 0.00 0.00 5.24
3132 5697 1.542544 GACCGATCAAGTACCGAACG 58.457 55.000 5.81 5.81 0.00 3.95
3133 5698 1.542544 CGACCGATCAAGTACCGAAC 58.457 55.000 0.00 0.00 0.00 3.95
3134 5699 0.452987 CCGACCGATCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
3135 5700 0.392863 TCCGACCGATCAAGTACCGA 60.393 55.000 0.00 0.00 0.00 4.69
3137 5702 1.334779 CGATCCGACCGATCAAGTACC 60.335 57.143 4.93 0.00 46.85 3.34
3138 5703 1.332997 ACGATCCGACCGATCAAGTAC 59.667 52.381 0.00 0.00 46.85 2.73
3139 5704 1.332686 CACGATCCGACCGATCAAGTA 59.667 52.381 0.00 0.00 46.85 2.24
3142 5707 0.812549 TTCACGATCCGACCGATCAA 59.187 50.000 0.00 0.00 46.85 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.