Multiple sequence alignment - TraesCS3D01G438400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G438400 chr3D 100.000 2294 0 0 769 3062 549074044 549071751 0.000000e+00 4237
1 TraesCS3D01G438400 chr3D 94.360 1117 21 13 1956 3062 17849981 17848897 0.000000e+00 1676
2 TraesCS3D01G438400 chr3D 96.979 993 18 3 2079 3062 604592160 604593149 0.000000e+00 1657
3 TraesCS3D01G438400 chr3D 100.000 611 0 0 1 611 549074812 549074202 0.000000e+00 1129
4 TraesCS3D01G438400 chr3D 83.137 1103 139 26 785 1872 549467957 549466887 0.000000e+00 963
5 TraesCS3D01G438400 chr3D 81.735 1199 163 33 769 1929 548725590 548726770 0.000000e+00 950
6 TraesCS3D01G438400 chr3D 81.191 1175 171 28 769 1926 458885913 458884772 0.000000e+00 900
7 TraesCS3D01G438400 chr3D 80.700 1171 183 30 769 1929 549349770 549348633 0.000000e+00 870
8 TraesCS3D01G438400 chr3D 79.354 1177 186 28 774 1928 548711778 548712919 0.000000e+00 774
9 TraesCS3D01G438400 chr3D 96.684 392 4 1 1947 2329 549067704 549067313 0.000000e+00 643
10 TraesCS3D01G438400 chr3D 93.023 301 20 1 280 579 20892901 20893201 3.620000e-119 438
11 TraesCS3D01G438400 chr3B 96.010 1178 47 0 769 1946 728585811 728584634 0.000000e+00 1916
12 TraesCS3D01G438400 chr3B 83.234 1175 151 28 777 1933 728890679 728889533 0.000000e+00 1037
13 TraesCS3D01G438400 chr3B 82.002 1139 150 31 777 1894 728754008 728752904 0.000000e+00 917
14 TraesCS3D01G438400 chr3B 81.040 1192 184 20 769 1929 727786558 727787738 0.000000e+00 911
15 TraesCS3D01G438400 chr3B 80.805 745 116 15 1122 1857 727794143 727794869 2.670000e-155 558
16 TraesCS3D01G438400 chr3B 88.889 198 20 1 65 260 728586125 728585928 3.050000e-60 243
17 TraesCS3D01G438400 chr6D 95.410 1111 19 7 1961 3062 30228786 30229873 0.000000e+00 1740
18 TraesCS3D01G438400 chr6D 95.328 1113 21 7 1959 3062 295302446 295301356 0.000000e+00 1738
19 TraesCS3D01G438400 chr6D 94.459 1137 28 19 1937 3062 121161182 121162294 0.000000e+00 1718
20 TraesCS3D01G438400 chr6D 91.659 1115 58 9 1958 3062 14193474 14192385 0.000000e+00 1511
21 TraesCS3D01G438400 chr6D 93.355 301 19 1 280 579 337600242 337599942 7.790000e-121 444
22 TraesCS3D01G438400 chr6D 87.632 380 8 8 1961 2331 30233762 30234111 3.680000e-109 405
23 TraesCS3D01G438400 chr7D 94.652 1122 25 4 1954 3062 149716521 149717620 0.000000e+00 1707
24 TraesCS3D01G438400 chr7D 94.454 1118 30 17 1954 3062 88210439 88209345 0.000000e+00 1692
25 TraesCS3D01G438400 chr7D 89.295 383 10 3 1954 2327 149721614 149721974 4.660000e-123 451
26 TraesCS3D01G438400 chr7D 93.355 301 18 2 280 579 565664461 565664760 7.790000e-121 444
27 TraesCS3D01G438400 chr7D 93.857 293 17 1 288 579 444357225 444356933 1.010000e-119 440
28 TraesCS3D01G438400 chr4D 96.701 970 20 4 2104 3062 342081969 342082937 0.000000e+00 1604
29 TraesCS3D01G438400 chr5D 94.737 969 39 9 2104 3062 277684417 277685383 0.000000e+00 1496
30 TraesCS3D01G438400 chr5D 89.911 1120 69 18 1955 3060 334950339 334949250 0.000000e+00 1402
31 TraesCS3D01G438400 chr5D 86.486 999 102 23 2090 3062 238185611 238184620 0.000000e+00 1066
32 TraesCS3D01G438400 chr5D 88.743 382 11 15 1955 2327 334945005 334944647 3.620000e-119 438
33 TraesCS3D01G438400 chr5D 90.657 289 17 4 2063 2342 415291449 415291736 2.880000e-100 375
34 TraesCS3D01G438400 chr5D 91.071 280 15 4 2063 2333 430585412 430585690 1.340000e-98 370
35 TraesCS3D01G438400 chr7A 93.606 1001 42 12 2072 3062 606542646 606543634 0.000000e+00 1474
36 TraesCS3D01G438400 chr2D 89.483 1122 76 17 1955 3062 114651404 114652497 0.000000e+00 1380
37 TraesCS3D01G438400 chr2D 86.250 1040 103 25 2051 3062 76573497 76574524 0.000000e+00 1092
38 TraesCS3D01G438400 chr2D 86.237 1039 104 27 2051 3062 96778856 96779882 0.000000e+00 1090
39 TraesCS3D01G438400 chr2D 93.857 293 17 1 288 579 76640442 76640734 1.010000e-119 440
40 TraesCS3D01G438400 chr2D 86.387 382 18 8 1955 2327 114656701 114657057 1.330000e-103 387
41 TraesCS3D01G438400 chr3A 92.558 739 37 7 769 1507 686551582 686550862 0.000000e+00 1044
42 TraesCS3D01G438400 chr3A 82.850 1172 142 39 785 1933 686749798 686748663 0.000000e+00 996
43 TraesCS3D01G438400 chr3A 81.841 1195 163 34 769 1929 686189752 686190926 0.000000e+00 955
44 TraesCS3D01G438400 chr3A 81.287 1181 170 25 771 1933 686183113 686184260 0.000000e+00 909
45 TraesCS3D01G438400 chr3A 80.461 1172 174 29 777 1933 686539214 686538083 0.000000e+00 845
46 TraesCS3D01G438400 chr3A 95.291 446 20 1 1501 1946 686549887 686549443 0.000000e+00 706
47 TraesCS3D01G438400 chr3A 88.660 194 16 4 100 287 686551823 686551630 6.600000e-57 231
48 TraesCS3D01G438400 chr7B 82.438 1173 168 26 777 1933 543187033 543188183 0.000000e+00 990
49 TraesCS3D01G438400 chr6A 94.198 293 16 1 288 579 379661137 379660845 2.170000e-121 446
50 TraesCS3D01G438400 chr6A 93.023 301 20 1 280 579 408052901 408053201 3.620000e-119 438
51 TraesCS3D01G438400 chr1D 92.834 307 21 1 274 579 313817022 313817328 7.790000e-121 444
52 TraesCS3D01G438400 chr1D 98.058 103 2 0 1960 2062 47942405 47942303 2.430000e-41 180
53 TraesCS3D01G438400 chr2B 93.000 300 20 1 281 579 247519316 247519615 1.300000e-118 436


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G438400 chr3D 549071751 549074812 3061 True 2683.000000 4237 100.000000 1 3062 2 chr3D.!!$R6 3061
1 TraesCS3D01G438400 chr3D 17848897 17849981 1084 True 1676.000000 1676 94.360000 1956 3062 1 chr3D.!!$R1 1106
2 TraesCS3D01G438400 chr3D 604592160 604593149 989 False 1657.000000 1657 96.979000 2079 3062 1 chr3D.!!$F4 983
3 TraesCS3D01G438400 chr3D 549466887 549467957 1070 True 963.000000 963 83.137000 785 1872 1 chr3D.!!$R5 1087
4 TraesCS3D01G438400 chr3D 548725590 548726770 1180 False 950.000000 950 81.735000 769 1929 1 chr3D.!!$F3 1160
5 TraesCS3D01G438400 chr3D 458884772 458885913 1141 True 900.000000 900 81.191000 769 1926 1 chr3D.!!$R2 1157
6 TraesCS3D01G438400 chr3D 549348633 549349770 1137 True 870.000000 870 80.700000 769 1929 1 chr3D.!!$R4 1160
7 TraesCS3D01G438400 chr3D 548711778 548712919 1141 False 774.000000 774 79.354000 774 1928 1 chr3D.!!$F2 1154
8 TraesCS3D01G438400 chr3B 728584634 728586125 1491 True 1079.500000 1916 92.449500 65 1946 2 chr3B.!!$R3 1881
9 TraesCS3D01G438400 chr3B 728889533 728890679 1146 True 1037.000000 1037 83.234000 777 1933 1 chr3B.!!$R2 1156
10 TraesCS3D01G438400 chr3B 728752904 728754008 1104 True 917.000000 917 82.002000 777 1894 1 chr3B.!!$R1 1117
11 TraesCS3D01G438400 chr3B 727786558 727787738 1180 False 911.000000 911 81.040000 769 1929 1 chr3B.!!$F1 1160
12 TraesCS3D01G438400 chr3B 727794143 727794869 726 False 558.000000 558 80.805000 1122 1857 1 chr3B.!!$F2 735
13 TraesCS3D01G438400 chr6D 295301356 295302446 1090 True 1738.000000 1738 95.328000 1959 3062 1 chr6D.!!$R2 1103
14 TraesCS3D01G438400 chr6D 121161182 121162294 1112 False 1718.000000 1718 94.459000 1937 3062 1 chr6D.!!$F1 1125
15 TraesCS3D01G438400 chr6D 14192385 14193474 1089 True 1511.000000 1511 91.659000 1958 3062 1 chr6D.!!$R1 1104
16 TraesCS3D01G438400 chr6D 30228786 30234111 5325 False 1072.500000 1740 91.521000 1961 3062 2 chr6D.!!$F2 1101
17 TraesCS3D01G438400 chr7D 88209345 88210439 1094 True 1692.000000 1692 94.454000 1954 3062 1 chr7D.!!$R1 1108
18 TraesCS3D01G438400 chr7D 149716521 149721974 5453 False 1079.000000 1707 91.973500 1954 3062 2 chr7D.!!$F2 1108
19 TraesCS3D01G438400 chr4D 342081969 342082937 968 False 1604.000000 1604 96.701000 2104 3062 1 chr4D.!!$F1 958
20 TraesCS3D01G438400 chr5D 277684417 277685383 966 False 1496.000000 1496 94.737000 2104 3062 1 chr5D.!!$F1 958
21 TraesCS3D01G438400 chr5D 334949250 334950339 1089 True 1402.000000 1402 89.911000 1955 3060 1 chr5D.!!$R3 1105
22 TraesCS3D01G438400 chr5D 238184620 238185611 991 True 1066.000000 1066 86.486000 2090 3062 1 chr5D.!!$R1 972
23 TraesCS3D01G438400 chr7A 606542646 606543634 988 False 1474.000000 1474 93.606000 2072 3062 1 chr7A.!!$F1 990
24 TraesCS3D01G438400 chr2D 114651404 114652497 1093 False 1380.000000 1380 89.483000 1955 3062 1 chr2D.!!$F4 1107
25 TraesCS3D01G438400 chr2D 76573497 76574524 1027 False 1092.000000 1092 86.250000 2051 3062 1 chr2D.!!$F1 1011
26 TraesCS3D01G438400 chr2D 96778856 96779882 1026 False 1090.000000 1090 86.237000 2051 3062 1 chr2D.!!$F3 1011
27 TraesCS3D01G438400 chr3A 686748663 686749798 1135 True 996.000000 996 82.850000 785 1933 1 chr3A.!!$R2 1148
28 TraesCS3D01G438400 chr3A 686189752 686190926 1174 False 955.000000 955 81.841000 769 1929 1 chr3A.!!$F2 1160
29 TraesCS3D01G438400 chr3A 686183113 686184260 1147 False 909.000000 909 81.287000 771 1933 1 chr3A.!!$F1 1162
30 TraesCS3D01G438400 chr3A 686538083 686539214 1131 True 845.000000 845 80.461000 777 1933 1 chr3A.!!$R1 1156
31 TraesCS3D01G438400 chr3A 686549443 686551823 2380 True 660.333333 1044 92.169667 100 1946 3 chr3A.!!$R3 1846
32 TraesCS3D01G438400 chr7B 543187033 543188183 1150 False 990.000000 990 82.438000 777 1933 1 chr7B.!!$F1 1156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.029167 TGTGTTCGTGCTGCAACATG 59.971 50.0 2.77 2.77 35.05 3.21 F
52 53 0.029167 TGTTCGTGCTGCAACATGTG 59.971 50.0 2.77 0.00 0.00 3.21 F
53 54 0.029300 GTTCGTGCTGCAACATGTGT 59.971 50.0 2.77 0.00 0.00 3.72 F
566 612 0.032130 GCAGCAGGATCCGTCGATAA 59.968 55.0 5.98 0.00 0.00 1.75 F
605 651 0.390860 GCCTACCATGAGCACGAGAT 59.609 55.0 0.00 0.00 0.00 2.75 F
1430 1524 0.449786 TGGTTAATTGCGGTGCATCG 59.550 50.0 16.79 16.79 38.76 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1294 1367 0.665298 GATGAGAAAAGGCATCCGGC 59.335 55.000 0.0 0.0 43.74 6.13 R
2051 3152 1.073025 TCACCATGTCACCTGCCAC 59.927 57.895 0.0 0.0 0.00 5.01 R
2052 3153 1.073025 GTCACCATGTCACCTGCCA 59.927 57.895 0.0 0.0 0.00 4.92 R
2055 3156 0.950555 CACCGTCACCATGTCACCTG 60.951 60.000 0.0 0.0 0.00 4.00 R
2056 3157 1.371183 CACCGTCACCATGTCACCT 59.629 57.895 0.0 0.0 0.00 4.00 R
2432 3578 3.023832 TGTGGCTGTCTGATTCTATCGA 58.976 45.455 0.0 0.0 0.00 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.477880 GCACCAATCGATTTCCCGT 58.522 52.632 8.21 0.00 0.00 5.28
19 20 0.808755 GCACCAATCGATTTCCCGTT 59.191 50.000 8.21 0.00 0.00 4.44
20 21 1.202143 GCACCAATCGATTTCCCGTTC 60.202 52.381 8.21 0.00 0.00 3.95
21 22 2.080693 CACCAATCGATTTCCCGTTCA 58.919 47.619 8.21 0.00 0.00 3.18
22 23 2.682856 CACCAATCGATTTCCCGTTCAT 59.317 45.455 8.21 0.00 0.00 2.57
23 24 2.682856 ACCAATCGATTTCCCGTTCATG 59.317 45.455 8.21 0.00 0.00 3.07
24 25 2.541588 CCAATCGATTTCCCGTTCATGC 60.542 50.000 8.21 0.00 0.00 4.06
25 26 2.332063 ATCGATTTCCCGTTCATGCT 57.668 45.000 0.00 0.00 0.00 3.79
26 27 1.368641 TCGATTTCCCGTTCATGCTG 58.631 50.000 0.00 0.00 0.00 4.41
27 28 0.248215 CGATTTCCCGTTCATGCTGC 60.248 55.000 0.00 0.00 0.00 5.25
28 29 0.248215 GATTTCCCGTTCATGCTGCG 60.248 55.000 0.00 0.00 0.00 5.18
29 30 0.676466 ATTTCCCGTTCATGCTGCGA 60.676 50.000 0.00 0.00 0.00 5.10
30 31 0.886938 TTTCCCGTTCATGCTGCGAA 60.887 50.000 0.00 0.00 0.00 4.70
31 32 0.676466 TTCCCGTTCATGCTGCGAAT 60.676 50.000 0.00 0.00 0.00 3.34
32 33 1.063006 CCCGTTCATGCTGCGAATG 59.937 57.895 0.00 0.00 0.00 2.67
33 34 1.647545 CCCGTTCATGCTGCGAATGT 61.648 55.000 8.14 0.00 0.00 2.71
34 35 0.521867 CCGTTCATGCTGCGAATGTG 60.522 55.000 8.14 0.00 0.00 3.21
35 36 0.166597 CGTTCATGCTGCGAATGTGT 59.833 50.000 0.00 0.00 0.00 3.72
36 37 1.400113 CGTTCATGCTGCGAATGTGTT 60.400 47.619 0.00 0.00 0.00 3.32
37 38 2.245096 GTTCATGCTGCGAATGTGTTC 58.755 47.619 0.00 0.00 0.00 3.18
46 47 3.843632 GAATGTGTTCGTGCTGCAA 57.156 47.368 2.77 0.00 0.00 4.08
47 48 1.398595 GAATGTGTTCGTGCTGCAAC 58.601 50.000 2.77 0.00 0.00 4.17
48 49 0.737804 AATGTGTTCGTGCTGCAACA 59.262 45.000 2.77 5.09 0.00 3.33
49 50 0.953727 ATGTGTTCGTGCTGCAACAT 59.046 45.000 2.77 7.53 35.05 2.71
50 51 0.029167 TGTGTTCGTGCTGCAACATG 59.971 50.000 2.77 2.77 35.05 3.21
51 52 0.029300 GTGTTCGTGCTGCAACATGT 59.971 50.000 2.77 0.00 35.05 3.21
52 53 0.029167 TGTTCGTGCTGCAACATGTG 59.971 50.000 2.77 0.00 0.00 3.21
53 54 0.029300 GTTCGTGCTGCAACATGTGT 59.971 50.000 2.77 0.00 0.00 3.72
54 55 0.307453 TTCGTGCTGCAACATGTGTC 59.693 50.000 2.77 0.00 0.00 3.67
55 56 1.439201 CGTGCTGCAACATGTGTCG 60.439 57.895 2.77 0.00 0.00 4.35
56 57 1.648720 GTGCTGCAACATGTGTCGT 59.351 52.632 2.77 0.00 0.00 4.34
57 58 0.865111 GTGCTGCAACATGTGTCGTA 59.135 50.000 2.77 0.00 0.00 3.43
58 59 0.865111 TGCTGCAACATGTGTCGTAC 59.135 50.000 0.00 0.00 0.00 3.67
59 60 0.865111 GCTGCAACATGTGTCGTACA 59.135 50.000 0.00 0.00 44.87 2.90
60 61 1.262950 GCTGCAACATGTGTCGTACAA 59.737 47.619 0.00 0.00 43.77 2.41
61 62 2.286713 GCTGCAACATGTGTCGTACAAA 60.287 45.455 0.00 0.00 43.77 2.83
62 63 3.790456 GCTGCAACATGTGTCGTACAAAA 60.790 43.478 0.00 0.00 43.77 2.44
63 64 4.346970 CTGCAACATGTGTCGTACAAAAA 58.653 39.130 0.00 0.00 43.77 1.94
128 129 9.751542 AAAATGTTGATGTTTATAAACGGACAA 57.248 25.926 20.51 20.35 41.74 3.18
170 174 1.077068 CCTTTAATGCGGGGCCAGA 60.077 57.895 8.22 0.00 0.00 3.86
195 199 2.529744 GGCCAGGTCTGTTCCACCT 61.530 63.158 0.00 0.00 45.89 4.00
235 239 0.325933 TGATGTTCCACCCAGAGCAG 59.674 55.000 0.00 0.00 30.05 4.24
245 249 2.027377 CACCCAGAGCAGTCTTCTCAAT 60.027 50.000 2.24 0.00 33.15 2.57
251 255 2.165437 GAGCAGTCTTCTCAATCGACCT 59.835 50.000 0.00 0.00 0.00 3.85
264 310 1.227263 CGACCTAATCGCCCACTGG 60.227 63.158 0.00 0.00 45.52 4.00
265 311 1.672854 CGACCTAATCGCCCACTGGA 61.673 60.000 0.00 0.00 45.52 3.86
279 325 0.610687 ACTGGAAGGAGCTGTACTGC 59.389 55.000 16.28 16.28 39.30 4.40
286 332 3.094484 AGGAGCTGTACTGCTAAGACT 57.906 47.619 25.08 17.51 46.73 3.24
287 333 3.020984 AGGAGCTGTACTGCTAAGACTC 58.979 50.000 25.08 12.82 46.73 3.36
288 334 3.020984 GGAGCTGTACTGCTAAGACTCT 58.979 50.000 25.08 3.04 44.17 3.24
289 335 3.181491 GGAGCTGTACTGCTAAGACTCTG 60.181 52.174 25.08 0.00 44.17 3.35
290 336 3.426615 AGCTGTACTGCTAAGACTCTGT 58.573 45.455 24.01 0.00 42.10 3.41
291 337 3.829601 AGCTGTACTGCTAAGACTCTGTT 59.170 43.478 24.01 0.00 42.10 3.16
292 338 4.282195 AGCTGTACTGCTAAGACTCTGTTT 59.718 41.667 24.01 0.00 42.10 2.83
293 339 4.387256 GCTGTACTGCTAAGACTCTGTTTG 59.613 45.833 16.69 0.00 0.00 2.93
294 340 4.883083 TGTACTGCTAAGACTCTGTTTGG 58.117 43.478 0.00 0.00 0.00 3.28
295 341 4.344102 TGTACTGCTAAGACTCTGTTTGGT 59.656 41.667 0.00 0.00 0.00 3.67
296 342 4.423625 ACTGCTAAGACTCTGTTTGGTT 57.576 40.909 0.00 0.00 0.00 3.67
297 343 4.381411 ACTGCTAAGACTCTGTTTGGTTC 58.619 43.478 0.00 0.00 0.00 3.62
298 344 3.390135 TGCTAAGACTCTGTTTGGTTCG 58.610 45.455 0.00 0.00 0.00 3.95
299 345 2.737252 GCTAAGACTCTGTTTGGTTCGG 59.263 50.000 0.00 0.00 0.00 4.30
300 346 3.802675 GCTAAGACTCTGTTTGGTTCGGT 60.803 47.826 0.00 0.00 0.00 4.69
301 347 3.277142 AAGACTCTGTTTGGTTCGGTT 57.723 42.857 0.00 0.00 0.00 4.44
302 348 2.835027 AGACTCTGTTTGGTTCGGTTC 58.165 47.619 0.00 0.00 0.00 3.62
303 349 2.434702 AGACTCTGTTTGGTTCGGTTCT 59.565 45.455 0.00 0.00 0.00 3.01
304 350 2.544267 GACTCTGTTTGGTTCGGTTCTG 59.456 50.000 0.00 0.00 0.00 3.02
305 351 1.873591 CTCTGTTTGGTTCGGTTCTGG 59.126 52.381 0.00 0.00 0.00 3.86
306 352 1.487142 TCTGTTTGGTTCGGTTCTGGA 59.513 47.619 0.00 0.00 0.00 3.86
307 353 2.105821 TCTGTTTGGTTCGGTTCTGGAT 59.894 45.455 0.00 0.00 0.00 3.41
308 354 2.884639 CTGTTTGGTTCGGTTCTGGATT 59.115 45.455 0.00 0.00 0.00 3.01
309 355 3.292460 TGTTTGGTTCGGTTCTGGATTT 58.708 40.909 0.00 0.00 0.00 2.17
310 356 3.316868 TGTTTGGTTCGGTTCTGGATTTC 59.683 43.478 0.00 0.00 0.00 2.17
311 357 3.502123 TTGGTTCGGTTCTGGATTTCT 57.498 42.857 0.00 0.00 0.00 2.52
312 358 4.627284 TTGGTTCGGTTCTGGATTTCTA 57.373 40.909 0.00 0.00 0.00 2.10
313 359 4.627284 TGGTTCGGTTCTGGATTTCTAA 57.373 40.909 0.00 0.00 0.00 2.10
314 360 4.975631 TGGTTCGGTTCTGGATTTCTAAA 58.024 39.130 0.00 0.00 0.00 1.85
315 361 5.378332 TGGTTCGGTTCTGGATTTCTAAAA 58.622 37.500 0.00 0.00 0.00 1.52
316 362 5.472137 TGGTTCGGTTCTGGATTTCTAAAAG 59.528 40.000 0.00 0.00 0.00 2.27
317 363 5.391449 GTTCGGTTCTGGATTTCTAAAAGC 58.609 41.667 0.00 0.00 0.00 3.51
318 364 4.647611 TCGGTTCTGGATTTCTAAAAGCA 58.352 39.130 0.00 0.00 0.00 3.91
319 365 4.695455 TCGGTTCTGGATTTCTAAAAGCAG 59.305 41.667 0.00 0.00 0.00 4.24
320 366 4.672801 CGGTTCTGGATTTCTAAAAGCAGC 60.673 45.833 0.00 0.00 0.00 5.25
321 367 4.460731 GGTTCTGGATTTCTAAAAGCAGCT 59.539 41.667 0.00 0.00 0.00 4.24
322 368 5.397326 GTTCTGGATTTCTAAAAGCAGCTG 58.603 41.667 10.11 10.11 0.00 4.24
323 369 4.655963 TCTGGATTTCTAAAAGCAGCTGT 58.344 39.130 16.64 0.00 0.00 4.40
324 370 4.456911 TCTGGATTTCTAAAAGCAGCTGTG 59.543 41.667 16.64 0.00 0.00 3.66
325 371 4.397420 TGGATTTCTAAAAGCAGCTGTGA 58.603 39.130 16.64 1.92 0.00 3.58
326 372 4.826733 TGGATTTCTAAAAGCAGCTGTGAA 59.173 37.500 16.64 7.75 0.00 3.18
327 373 5.301551 TGGATTTCTAAAAGCAGCTGTGAAA 59.698 36.000 16.64 15.06 0.00 2.69
328 374 6.183360 TGGATTTCTAAAAGCAGCTGTGAAAA 60.183 34.615 16.64 7.20 0.00 2.29
329 375 6.701400 GGATTTCTAAAAGCAGCTGTGAAAAA 59.299 34.615 16.64 7.71 0.00 1.94
330 376 7.386025 GGATTTCTAAAAGCAGCTGTGAAAAAT 59.614 33.333 16.64 11.76 0.00 1.82
331 377 7.698836 TTTCTAAAAGCAGCTGTGAAAAATC 57.301 32.000 16.64 0.00 0.00 2.17
332 378 6.639632 TCTAAAAGCAGCTGTGAAAAATCT 57.360 33.333 16.64 0.00 0.00 2.40
333 379 6.441274 TCTAAAAGCAGCTGTGAAAAATCTG 58.559 36.000 16.64 0.00 0.00 2.90
335 381 2.719426 GCAGCTGTGAAAAATCTGCT 57.281 45.000 16.64 0.00 44.71 4.24
337 383 3.637998 CAGCTGTGAAAAATCTGCTGT 57.362 42.857 5.25 0.00 45.07 4.40
338 384 3.305964 CAGCTGTGAAAAATCTGCTGTG 58.694 45.455 5.25 0.00 45.07 3.66
339 385 2.295349 AGCTGTGAAAAATCTGCTGTGG 59.705 45.455 0.00 0.00 37.44 4.17
340 386 2.294233 GCTGTGAAAAATCTGCTGTGGA 59.706 45.455 0.00 0.00 0.00 4.02
341 387 3.611057 GCTGTGAAAAATCTGCTGTGGAG 60.611 47.826 0.00 0.00 0.00 3.86
342 388 3.817084 CTGTGAAAAATCTGCTGTGGAGA 59.183 43.478 0.00 0.00 0.00 3.71
343 389 4.206375 TGTGAAAAATCTGCTGTGGAGAA 58.794 39.130 0.00 0.00 0.00 2.87
344 390 4.644234 TGTGAAAAATCTGCTGTGGAGAAA 59.356 37.500 0.00 0.00 0.00 2.52
345 391 4.978580 GTGAAAAATCTGCTGTGGAGAAAC 59.021 41.667 0.00 0.00 0.00 2.78
346 392 4.644234 TGAAAAATCTGCTGTGGAGAAACA 59.356 37.500 0.00 0.00 0.00 2.83
353 399 1.233019 CTGTGGAGAAACAGCTGTGG 58.767 55.000 22.49 0.00 41.05 4.17
354 400 0.836606 TGTGGAGAAACAGCTGTGGA 59.163 50.000 22.49 0.00 0.00 4.02
355 401 1.211703 TGTGGAGAAACAGCTGTGGAA 59.788 47.619 22.49 0.21 0.00 3.53
356 402 2.297701 GTGGAGAAACAGCTGTGGAAA 58.702 47.619 22.49 1.38 0.00 3.13
357 403 2.687935 GTGGAGAAACAGCTGTGGAAAA 59.312 45.455 22.49 1.99 0.00 2.29
358 404 3.319122 GTGGAGAAACAGCTGTGGAAAAT 59.681 43.478 22.49 0.00 0.00 1.82
359 405 3.569701 TGGAGAAACAGCTGTGGAAAATC 59.430 43.478 22.49 12.41 0.00 2.17
360 406 3.823304 GGAGAAACAGCTGTGGAAAATCT 59.177 43.478 22.49 16.11 0.00 2.40
361 407 4.320788 GGAGAAACAGCTGTGGAAAATCTG 60.321 45.833 22.49 0.00 0.00 2.90
362 408 4.464008 AGAAACAGCTGTGGAAAATCTGA 58.536 39.130 22.49 0.00 0.00 3.27
363 409 5.075493 AGAAACAGCTGTGGAAAATCTGAT 58.925 37.500 22.49 0.00 0.00 2.90
364 410 4.778534 AACAGCTGTGGAAAATCTGATG 57.221 40.909 22.49 0.00 0.00 3.07
365 411 3.759581 ACAGCTGTGGAAAATCTGATGT 58.240 40.909 20.97 0.00 0.00 3.06
366 412 3.504906 ACAGCTGTGGAAAATCTGATGTG 59.495 43.478 20.97 0.00 32.73 3.21
367 413 3.754850 CAGCTGTGGAAAATCTGATGTGA 59.245 43.478 5.25 0.00 0.00 3.58
368 414 4.216902 CAGCTGTGGAAAATCTGATGTGAA 59.783 41.667 5.25 0.00 0.00 3.18
369 415 4.828939 AGCTGTGGAAAATCTGATGTGAAA 59.171 37.500 0.00 0.00 0.00 2.69
370 416 5.302568 AGCTGTGGAAAATCTGATGTGAAAA 59.697 36.000 0.00 0.00 0.00 2.29
371 417 5.984926 GCTGTGGAAAATCTGATGTGAAAAA 59.015 36.000 0.00 0.00 0.00 1.94
372 418 6.145048 GCTGTGGAAAATCTGATGTGAAAAAG 59.855 38.462 0.00 0.00 0.00 2.27
373 419 7.111247 TGTGGAAAATCTGATGTGAAAAAGT 57.889 32.000 0.00 0.00 0.00 2.66
374 420 7.555087 TGTGGAAAATCTGATGTGAAAAAGTT 58.445 30.769 0.00 0.00 0.00 2.66
375 421 7.492020 TGTGGAAAATCTGATGTGAAAAAGTTG 59.508 33.333 0.00 0.00 0.00 3.16
376 422 7.492344 GTGGAAAATCTGATGTGAAAAAGTTGT 59.508 33.333 0.00 0.00 0.00 3.32
377 423 8.690884 TGGAAAATCTGATGTGAAAAAGTTGTA 58.309 29.630 0.00 0.00 0.00 2.41
378 424 9.185192 GGAAAATCTGATGTGAAAAAGTTGTAG 57.815 33.333 0.00 0.00 0.00 2.74
379 425 9.185192 GAAAATCTGATGTGAAAAAGTTGTAGG 57.815 33.333 0.00 0.00 0.00 3.18
380 426 7.823745 AATCTGATGTGAAAAAGTTGTAGGT 57.176 32.000 0.00 0.00 0.00 3.08
381 427 6.861065 TCTGATGTGAAAAAGTTGTAGGTC 57.139 37.500 0.00 0.00 0.00 3.85
382 428 6.353323 TCTGATGTGAAAAAGTTGTAGGTCA 58.647 36.000 0.00 0.00 0.00 4.02
383 429 6.998074 TCTGATGTGAAAAAGTTGTAGGTCAT 59.002 34.615 0.00 0.00 0.00 3.06
384 430 7.502226 TCTGATGTGAAAAAGTTGTAGGTCATT 59.498 33.333 0.00 0.00 0.00 2.57
385 431 8.006298 TGATGTGAAAAAGTTGTAGGTCATTT 57.994 30.769 0.00 0.00 0.00 2.32
386 432 7.920151 TGATGTGAAAAAGTTGTAGGTCATTTG 59.080 33.333 0.00 0.00 0.00 2.32
387 433 6.568869 TGTGAAAAAGTTGTAGGTCATTTGG 58.431 36.000 0.00 0.00 0.00 3.28
388 434 5.462068 GTGAAAAAGTTGTAGGTCATTTGGC 59.538 40.000 0.00 0.00 0.00 4.52
389 435 5.127845 TGAAAAAGTTGTAGGTCATTTGGCA 59.872 36.000 0.00 0.00 0.00 4.92
390 436 5.606348 AAAAGTTGTAGGTCATTTGGCAA 57.394 34.783 0.00 0.00 0.00 4.52
391 437 5.606348 AAAGTTGTAGGTCATTTGGCAAA 57.394 34.783 16.01 16.01 0.00 3.68
392 438 4.584327 AGTTGTAGGTCATTTGGCAAAC 57.416 40.909 16.00 3.12 0.00 2.93
393 439 3.320826 AGTTGTAGGTCATTTGGCAAACC 59.679 43.478 16.00 13.12 0.00 3.27
404 450 2.284754 TGGCAAACCAGCTGATACAA 57.715 45.000 17.39 0.00 42.67 2.41
405 451 1.885887 TGGCAAACCAGCTGATACAAC 59.114 47.619 17.39 1.73 42.67 3.32
406 452 2.162681 GGCAAACCAGCTGATACAACT 58.837 47.619 17.39 0.00 35.26 3.16
407 453 2.558359 GGCAAACCAGCTGATACAACTT 59.442 45.455 17.39 0.00 35.26 2.66
408 454 3.005791 GGCAAACCAGCTGATACAACTTT 59.994 43.478 17.39 0.00 35.26 2.66
409 455 4.501400 GGCAAACCAGCTGATACAACTTTT 60.501 41.667 17.39 0.00 35.26 2.27
410 456 4.681483 GCAAACCAGCTGATACAACTTTTC 59.319 41.667 17.39 0.00 0.00 2.29
411 457 5.735922 GCAAACCAGCTGATACAACTTTTCA 60.736 40.000 17.39 0.00 0.00 2.69
412 458 5.695851 AACCAGCTGATACAACTTTTCAG 57.304 39.130 17.39 0.00 39.87 3.02
413 459 4.973168 ACCAGCTGATACAACTTTTCAGA 58.027 39.130 17.39 0.00 39.36 3.27
414 460 5.564550 ACCAGCTGATACAACTTTTCAGAT 58.435 37.500 17.39 0.00 39.36 2.90
415 461 6.006449 ACCAGCTGATACAACTTTTCAGATT 58.994 36.000 17.39 0.00 39.36 2.40
416 462 6.491403 ACCAGCTGATACAACTTTTCAGATTT 59.509 34.615 17.39 0.00 39.36 2.17
417 463 7.014615 ACCAGCTGATACAACTTTTCAGATTTT 59.985 33.333 17.39 0.00 39.36 1.82
418 464 7.327761 CCAGCTGATACAACTTTTCAGATTTTG 59.672 37.037 17.39 0.00 39.36 2.44
419 465 7.327761 CAGCTGATACAACTTTTCAGATTTTGG 59.672 37.037 8.42 0.00 39.36 3.28
420 466 6.089954 GCTGATACAACTTTTCAGATTTTGGC 59.910 38.462 3.47 0.00 39.36 4.52
421 467 6.454795 TGATACAACTTTTCAGATTTTGGCC 58.545 36.000 0.00 0.00 0.00 5.36
422 468 4.071961 ACAACTTTTCAGATTTTGGCCC 57.928 40.909 0.00 0.00 0.00 5.80
423 469 3.059166 CAACTTTTCAGATTTTGGCCCG 58.941 45.455 0.00 0.00 0.00 6.13
424 470 1.000843 ACTTTTCAGATTTTGGCCCGC 59.999 47.619 0.00 0.00 0.00 6.13
425 471 1.000731 CTTTTCAGATTTTGGCCCGCA 59.999 47.619 0.00 0.00 0.00 5.69
426 472 0.602562 TTTCAGATTTTGGCCCGCAG 59.397 50.000 0.00 0.00 0.00 5.18
427 473 1.876497 TTCAGATTTTGGCCCGCAGC 61.876 55.000 0.00 0.00 42.60 5.25
428 474 3.443045 AGATTTTGGCCCGCAGCG 61.443 61.111 8.18 8.18 45.17 5.18
442 488 2.653890 CGCAGCGGAATCATATTTTGG 58.346 47.619 7.00 0.00 0.00 3.28
443 489 2.290367 CGCAGCGGAATCATATTTTGGA 59.710 45.455 7.00 0.00 0.00 3.53
444 490 3.243035 CGCAGCGGAATCATATTTTGGAA 60.243 43.478 7.00 0.00 0.00 3.53
445 491 4.681744 GCAGCGGAATCATATTTTGGAAA 58.318 39.130 0.00 0.00 0.00 3.13
446 492 4.741676 GCAGCGGAATCATATTTTGGAAAG 59.258 41.667 0.00 0.00 0.00 2.62
447 493 4.741676 CAGCGGAATCATATTTTGGAAAGC 59.258 41.667 0.00 0.00 0.00 3.51
448 494 4.402155 AGCGGAATCATATTTTGGAAAGCA 59.598 37.500 0.00 0.00 0.00 3.91
449 495 4.504097 GCGGAATCATATTTTGGAAAGCAC 59.496 41.667 0.00 0.00 0.00 4.40
450 496 4.734854 CGGAATCATATTTTGGAAAGCACG 59.265 41.667 0.00 0.00 0.00 5.34
451 497 5.650543 GGAATCATATTTTGGAAAGCACGT 58.349 37.500 0.00 0.00 0.00 4.49
452 498 5.743872 GGAATCATATTTTGGAAAGCACGTC 59.256 40.000 0.00 0.00 0.00 4.34
453 499 4.695217 TCATATTTTGGAAAGCACGTCC 57.305 40.909 0.00 0.00 35.55 4.79
454 500 4.331968 TCATATTTTGGAAAGCACGTCCT 58.668 39.130 0.00 0.00 36.03 3.85
455 501 4.155826 TCATATTTTGGAAAGCACGTCCTG 59.844 41.667 0.00 0.00 36.03 3.86
456 502 2.045561 TTTTGGAAAGCACGTCCTGA 57.954 45.000 0.00 0.00 36.03 3.86
457 503 1.593196 TTTGGAAAGCACGTCCTGAG 58.407 50.000 0.00 0.00 36.03 3.35
458 504 0.884704 TTGGAAAGCACGTCCTGAGC 60.885 55.000 0.00 0.00 36.03 4.26
460 506 1.294659 GGAAAGCACGTCCTGAGCTG 61.295 60.000 0.00 0.00 44.24 4.24
461 507 1.905922 GAAAGCACGTCCTGAGCTGC 61.906 60.000 0.00 0.00 44.24 5.25
462 508 2.388890 AAAGCACGTCCTGAGCTGCT 62.389 55.000 0.00 0.00 44.24 4.24
463 509 2.358003 GCACGTCCTGAGCTGCTT 60.358 61.111 2.53 0.00 0.00 3.91
464 510 2.386660 GCACGTCCTGAGCTGCTTC 61.387 63.158 2.53 0.00 0.00 3.86
465 511 1.739562 CACGTCCTGAGCTGCTTCC 60.740 63.158 2.53 0.00 0.00 3.46
466 512 2.507992 CGTCCTGAGCTGCTTCCG 60.508 66.667 2.53 0.00 0.00 4.30
467 513 2.817396 GTCCTGAGCTGCTTCCGC 60.817 66.667 2.53 0.00 0.00 5.54
468 514 2.999648 TCCTGAGCTGCTTCCGCT 61.000 61.111 2.53 0.00 41.15 5.52
469 515 2.046507 CCTGAGCTGCTTCCGCTT 60.047 61.111 2.53 0.00 37.96 4.68
470 516 1.673665 CCTGAGCTGCTTCCGCTTT 60.674 57.895 2.53 0.00 37.96 3.51
471 517 1.239968 CCTGAGCTGCTTCCGCTTTT 61.240 55.000 2.53 0.00 37.96 2.27
472 518 0.109873 CTGAGCTGCTTCCGCTTTTG 60.110 55.000 2.53 0.00 37.96 2.44
473 519 1.211190 GAGCTGCTTCCGCTTTTGG 59.789 57.895 2.53 0.00 37.96 3.28
474 520 1.518903 GAGCTGCTTCCGCTTTTGGT 61.519 55.000 2.53 0.00 37.96 3.67
475 521 1.109323 AGCTGCTTCCGCTTTTGGTT 61.109 50.000 0.00 0.00 32.98 3.67
476 522 0.664466 GCTGCTTCCGCTTTTGGTTC 60.664 55.000 0.00 0.00 36.97 3.62
477 523 0.667993 CTGCTTCCGCTTTTGGTTCA 59.332 50.000 0.00 0.00 36.97 3.18
478 524 0.667993 TGCTTCCGCTTTTGGTTCAG 59.332 50.000 0.00 0.00 36.97 3.02
479 525 0.951558 GCTTCCGCTTTTGGTTCAGA 59.048 50.000 0.00 0.00 0.00 3.27
480 526 1.541588 GCTTCCGCTTTTGGTTCAGAT 59.458 47.619 0.00 0.00 0.00 2.90
481 527 2.029918 GCTTCCGCTTTTGGTTCAGATT 60.030 45.455 0.00 0.00 0.00 2.40
482 528 3.552890 GCTTCCGCTTTTGGTTCAGATTT 60.553 43.478 0.00 0.00 0.00 2.17
483 529 4.620982 CTTCCGCTTTTGGTTCAGATTTT 58.379 39.130 0.00 0.00 0.00 1.82
484 530 3.976169 TCCGCTTTTGGTTCAGATTTTG 58.024 40.909 0.00 0.00 0.00 2.44
485 531 3.059166 CCGCTTTTGGTTCAGATTTTGG 58.941 45.455 0.00 0.00 0.00 3.28
486 532 2.476241 CGCTTTTGGTTCAGATTTTGGC 59.524 45.455 0.00 0.00 0.00 4.52
487 533 3.465871 GCTTTTGGTTCAGATTTTGGCA 58.534 40.909 0.00 0.00 0.00 4.92
488 534 3.495753 GCTTTTGGTTCAGATTTTGGCAG 59.504 43.478 0.00 0.00 0.00 4.85
489 535 2.818130 TTGGTTCAGATTTTGGCAGC 57.182 45.000 0.00 0.00 0.00 5.25
490 536 0.597568 TGGTTCAGATTTTGGCAGCG 59.402 50.000 0.00 0.00 0.00 5.18
491 537 0.109132 GGTTCAGATTTTGGCAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
492 538 0.881118 GTTCAGATTTTGGCAGCGGA 59.119 50.000 0.00 0.00 0.00 5.54
493 539 1.474077 GTTCAGATTTTGGCAGCGGAT 59.526 47.619 0.00 0.00 0.00 4.18
494 540 1.838112 TCAGATTTTGGCAGCGGATT 58.162 45.000 0.00 0.00 0.00 3.01
495 541 2.170166 TCAGATTTTGGCAGCGGATTT 58.830 42.857 0.00 0.00 0.00 2.17
496 542 2.562298 TCAGATTTTGGCAGCGGATTTT 59.438 40.909 0.00 0.00 0.00 1.82
497 543 3.006752 TCAGATTTTGGCAGCGGATTTTT 59.993 39.130 0.00 0.00 0.00 1.94
498 544 3.123959 CAGATTTTGGCAGCGGATTTTTG 59.876 43.478 0.00 0.00 0.00 2.44
499 545 1.876322 TTTTGGCAGCGGATTTTTGG 58.124 45.000 0.00 0.00 0.00 3.28
500 546 1.043816 TTTGGCAGCGGATTTTTGGA 58.956 45.000 0.00 0.00 0.00 3.53
501 547 1.043816 TTGGCAGCGGATTTTTGGAA 58.956 45.000 0.00 0.00 0.00 3.53
502 548 1.265236 TGGCAGCGGATTTTTGGAAT 58.735 45.000 0.00 0.00 0.00 3.01
503 549 1.204467 TGGCAGCGGATTTTTGGAATC 59.796 47.619 0.00 0.00 0.00 2.52
504 550 1.548986 GCAGCGGATTTTTGGAATCG 58.451 50.000 0.00 0.00 0.00 3.34
505 551 1.798813 GCAGCGGATTTTTGGAATCGG 60.799 52.381 0.00 0.00 0.00 4.18
506 552 1.742831 CAGCGGATTTTTGGAATCGGA 59.257 47.619 9.57 0.00 31.17 4.55
507 553 2.358898 CAGCGGATTTTTGGAATCGGAT 59.641 45.455 9.57 1.93 31.17 4.18
508 554 3.023832 AGCGGATTTTTGGAATCGGATT 58.976 40.909 2.19 2.19 31.17 3.01
509 555 3.066760 AGCGGATTTTTGGAATCGGATTC 59.933 43.478 20.01 20.01 38.55 2.52
510 556 3.066760 GCGGATTTTTGGAATCGGATTCT 59.933 43.478 25.29 8.76 39.24 2.40
511 557 4.274950 GCGGATTTTTGGAATCGGATTCTA 59.725 41.667 25.29 19.24 39.24 2.10
512 558 5.748592 CGGATTTTTGGAATCGGATTCTAC 58.251 41.667 25.29 13.44 39.24 2.59
513 559 5.527582 CGGATTTTTGGAATCGGATTCTACT 59.472 40.000 25.29 8.46 39.24 2.57
514 560 6.511767 CGGATTTTTGGAATCGGATTCTACTG 60.512 42.308 25.29 11.71 39.24 2.74
515 561 6.238759 GGATTTTTGGAATCGGATTCTACTGG 60.239 42.308 25.29 0.00 39.24 4.00
516 562 5.429681 TTTTGGAATCGGATTCTACTGGA 57.570 39.130 25.29 6.43 39.24 3.86
517 563 5.630415 TTTGGAATCGGATTCTACTGGAT 57.370 39.130 25.29 0.00 39.24 3.41
518 564 5.630415 TTGGAATCGGATTCTACTGGATT 57.370 39.130 25.29 0.00 39.24 3.01
519 565 5.215252 TGGAATCGGATTCTACTGGATTC 57.785 43.478 25.29 9.83 39.24 2.52
520 566 4.238514 GGAATCGGATTCTACTGGATTCG 58.761 47.826 25.29 0.00 39.24 3.34
521 567 4.262079 GGAATCGGATTCTACTGGATTCGT 60.262 45.833 25.29 0.00 39.24 3.85
522 568 4.939052 ATCGGATTCTACTGGATTCGTT 57.061 40.909 0.00 0.00 0.00 3.85
523 569 4.303086 TCGGATTCTACTGGATTCGTTC 57.697 45.455 0.00 0.00 0.00 3.95
524 570 3.952323 TCGGATTCTACTGGATTCGTTCT 59.048 43.478 0.00 0.00 0.00 3.01
525 571 4.401519 TCGGATTCTACTGGATTCGTTCTT 59.598 41.667 0.00 0.00 0.00 2.52
526 572 5.105473 TCGGATTCTACTGGATTCGTTCTTT 60.105 40.000 0.00 0.00 0.00 2.52
527 573 5.005779 CGGATTCTACTGGATTCGTTCTTTG 59.994 44.000 0.00 0.00 0.00 2.77
528 574 5.294552 GGATTCTACTGGATTCGTTCTTTGG 59.705 44.000 0.00 0.00 0.00 3.28
529 575 4.884668 TCTACTGGATTCGTTCTTTGGT 57.115 40.909 0.00 0.00 0.00 3.67
530 576 5.223449 TCTACTGGATTCGTTCTTTGGTT 57.777 39.130 0.00 0.00 0.00 3.67
531 577 5.235516 TCTACTGGATTCGTTCTTTGGTTC 58.764 41.667 0.00 0.00 0.00 3.62
532 578 3.815809 ACTGGATTCGTTCTTTGGTTCA 58.184 40.909 0.00 0.00 0.00 3.18
533 579 3.815401 ACTGGATTCGTTCTTTGGTTCAG 59.185 43.478 0.00 0.00 0.00 3.02
534 580 4.065088 CTGGATTCGTTCTTTGGTTCAGA 58.935 43.478 0.00 0.00 0.00 3.27
535 581 4.651778 TGGATTCGTTCTTTGGTTCAGAT 58.348 39.130 0.00 0.00 0.00 2.90
536 582 5.070001 TGGATTCGTTCTTTGGTTCAGATT 58.930 37.500 0.00 0.00 0.00 2.40
537 583 5.181245 TGGATTCGTTCTTTGGTTCAGATTC 59.819 40.000 0.00 0.00 0.00 2.52
538 584 5.412904 GGATTCGTTCTTTGGTTCAGATTCT 59.587 40.000 0.00 0.00 0.00 2.40
539 585 5.673337 TTCGTTCTTTGGTTCAGATTCTG 57.327 39.130 7.38 7.38 0.00 3.02
540 586 3.498397 TCGTTCTTTGGTTCAGATTCTGC 59.502 43.478 8.89 0.00 0.00 4.26
541 587 3.499918 CGTTCTTTGGTTCAGATTCTGCT 59.500 43.478 8.89 0.00 0.00 4.24
542 588 4.612259 CGTTCTTTGGTTCAGATTCTGCTG 60.612 45.833 8.89 0.00 37.24 4.41
543 589 2.816087 TCTTTGGTTCAGATTCTGCTGC 59.184 45.455 8.89 0.00 35.86 5.25
544 590 2.275134 TTGGTTCAGATTCTGCTGCA 57.725 45.000 8.89 0.88 35.86 4.41
545 591 1.527034 TGGTTCAGATTCTGCTGCAC 58.473 50.000 8.89 3.29 35.86 4.57
546 592 0.445436 GGTTCAGATTCTGCTGCACG 59.555 55.000 8.89 0.00 33.65 5.34
547 593 0.445436 GTTCAGATTCTGCTGCACGG 59.555 55.000 8.89 0.00 35.86 4.94
548 594 1.300971 TTCAGATTCTGCTGCACGGC 61.301 55.000 8.89 0.00 35.86 5.68
549 595 2.036571 CAGATTCTGCTGCACGGCA 61.037 57.895 0.00 3.76 40.15 5.69
558 604 4.783621 TGCACGGCAGCAGGATCC 62.784 66.667 2.48 2.48 40.11 3.36
563 609 3.838271 GGCAGCAGGATCCGTCGA 61.838 66.667 5.98 0.00 0.00 4.20
564 610 2.419198 GCAGCAGGATCCGTCGAT 59.581 61.111 5.98 0.00 0.00 3.59
565 611 1.660355 GCAGCAGGATCCGTCGATA 59.340 57.895 5.98 0.00 0.00 2.92
566 612 0.032130 GCAGCAGGATCCGTCGATAA 59.968 55.000 5.98 0.00 0.00 1.75
567 613 1.538204 GCAGCAGGATCCGTCGATAAA 60.538 52.381 5.98 0.00 0.00 1.40
568 614 2.821546 CAGCAGGATCCGTCGATAAAA 58.178 47.619 5.98 0.00 0.00 1.52
569 615 2.797156 CAGCAGGATCCGTCGATAAAAG 59.203 50.000 5.98 0.00 0.00 2.27
570 616 1.527311 GCAGGATCCGTCGATAAAAGC 59.473 52.381 5.98 0.00 0.00 3.51
571 617 2.803492 GCAGGATCCGTCGATAAAAGCT 60.803 50.000 5.98 0.00 0.00 3.74
572 618 2.797156 CAGGATCCGTCGATAAAAGCTG 59.203 50.000 5.98 0.00 0.00 4.24
573 619 2.693591 AGGATCCGTCGATAAAAGCTGA 59.306 45.455 5.98 0.00 0.00 4.26
574 620 3.132289 AGGATCCGTCGATAAAAGCTGAA 59.868 43.478 5.98 0.00 0.00 3.02
575 621 3.245519 GGATCCGTCGATAAAAGCTGAAC 59.754 47.826 0.00 0.00 0.00 3.18
576 622 2.613691 TCCGTCGATAAAAGCTGAACC 58.386 47.619 0.00 0.00 0.00 3.62
577 623 2.028839 TCCGTCGATAAAAGCTGAACCA 60.029 45.455 0.00 0.00 0.00 3.67
578 624 2.739913 CCGTCGATAAAAGCTGAACCAA 59.260 45.455 0.00 0.00 0.00 3.67
579 625 3.181520 CCGTCGATAAAAGCTGAACCAAG 60.182 47.826 0.00 0.00 0.00 3.61
580 626 3.181520 CGTCGATAAAAGCTGAACCAAGG 60.182 47.826 0.00 0.00 0.00 3.61
581 627 2.747446 TCGATAAAAGCTGAACCAAGGC 59.253 45.455 0.00 0.00 0.00 4.35
605 651 0.390860 GCCTACCATGAGCACGAGAT 59.609 55.000 0.00 0.00 0.00 2.75
1056 1107 1.139498 TCTCCATGCCTCCCCACAAA 61.139 55.000 0.00 0.00 0.00 2.83
1064 1115 1.178534 CCTCCCCACAAACGCAACAT 61.179 55.000 0.00 0.00 0.00 2.71
1294 1367 7.042523 CCAAAGGCAAAGAAAATACAAGAGTTG 60.043 37.037 0.00 0.00 0.00 3.16
1430 1524 0.449786 TGGTTAATTGCGGTGCATCG 59.550 50.000 16.79 16.79 38.76 3.84
1515 2431 0.472044 TGCCACCACACTTAGAAGCA 59.528 50.000 0.00 0.00 0.00 3.91
1940 3041 3.282021 GCTGAAATGCCATCCTTGAGTA 58.718 45.455 0.00 0.00 0.00 2.59
1951 3052 5.590259 GCCATCCTTGAGTATTATGTGTTGT 59.410 40.000 0.00 0.00 0.00 3.32
2057 3158 2.747460 CCATGGTGACGGTGGCAG 60.747 66.667 2.57 0.00 32.86 4.85
2058 3159 2.747460 CATGGTGACGGTGGCAGG 60.747 66.667 0.00 0.00 0.00 4.85
2059 3160 3.249189 ATGGTGACGGTGGCAGGT 61.249 61.111 0.00 0.00 0.00 4.00
2060 3161 3.551496 ATGGTGACGGTGGCAGGTG 62.551 63.158 0.00 0.00 0.00 4.00
2061 3162 3.936203 GGTGACGGTGGCAGGTGA 61.936 66.667 0.00 0.00 0.00 4.02
2062 3163 2.665185 GTGACGGTGGCAGGTGAC 60.665 66.667 0.00 0.00 0.00 3.67
2063 3164 3.157949 TGACGGTGGCAGGTGACA 61.158 61.111 0.00 0.00 0.00 3.58
2064 3165 2.347490 GACGGTGGCAGGTGACAT 59.653 61.111 0.00 0.00 34.33 3.06
2065 3166 2.032528 ACGGTGGCAGGTGACATG 59.967 61.111 0.00 0.00 34.33 3.21
2067 3168 2.436109 GGTGGCAGGTGACATGGT 59.564 61.111 0.00 0.00 34.33 3.55
2432 3578 3.044235 TCATCGTCACAGCTCAATTGT 57.956 42.857 5.13 0.00 0.00 2.71
2890 4045 6.605594 TCTTCCACACAAAAACTCCTAATGTT 59.394 34.615 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.483014 TGAACGGGAAATCGATTGGT 57.517 45.000 12.25 5.09 0.00 3.67
3 4 2.541588 GCATGAACGGGAAATCGATTGG 60.542 50.000 12.25 4.45 0.00 3.16
4 5 2.355756 AGCATGAACGGGAAATCGATTG 59.644 45.455 12.25 1.25 0.00 2.67
6 7 1.942657 CAGCATGAACGGGAAATCGAT 59.057 47.619 0.00 0.00 39.69 3.59
8 9 0.248215 GCAGCATGAACGGGAAATCG 60.248 55.000 0.00 0.00 39.69 3.34
10 11 0.676466 TCGCAGCATGAACGGGAAAT 60.676 50.000 0.00 0.00 39.69 2.17
12 13 0.676466 ATTCGCAGCATGAACGGGAA 60.676 50.000 0.00 4.16 39.69 3.97
13 14 1.078497 ATTCGCAGCATGAACGGGA 60.078 52.632 0.00 0.00 39.69 5.14
14 15 1.063006 CATTCGCAGCATGAACGGG 59.937 57.895 0.00 0.00 39.69 5.28
15 16 0.521867 CACATTCGCAGCATGAACGG 60.522 55.000 0.00 0.00 39.69 4.44
16 17 0.166597 ACACATTCGCAGCATGAACG 59.833 50.000 0.00 0.00 39.69 3.95
17 18 2.245096 GAACACATTCGCAGCATGAAC 58.755 47.619 0.00 0.00 39.69 3.18
18 19 2.617250 GAACACATTCGCAGCATGAA 57.383 45.000 0.00 0.00 39.69 2.57
28 29 1.268488 TGTTGCAGCACGAACACATTC 60.268 47.619 0.00 0.00 0.00 2.67
29 30 0.737804 TGTTGCAGCACGAACACATT 59.262 45.000 0.00 0.00 0.00 2.71
30 31 0.953727 ATGTTGCAGCACGAACACAT 59.046 45.000 5.00 0.00 34.98 3.21
31 32 0.029167 CATGTTGCAGCACGAACACA 59.971 50.000 5.00 0.00 34.98 3.72
32 33 0.029300 ACATGTTGCAGCACGAACAC 59.971 50.000 5.00 0.00 34.98 3.32
33 34 0.029167 CACATGTTGCAGCACGAACA 59.971 50.000 5.00 0.00 36.54 3.18
34 35 0.029300 ACACATGTTGCAGCACGAAC 59.971 50.000 5.00 0.00 0.00 3.95
35 36 0.307453 GACACATGTTGCAGCACGAA 59.693 50.000 5.00 0.00 0.00 3.85
36 37 1.830368 CGACACATGTTGCAGCACGA 61.830 55.000 5.00 0.00 0.00 4.35
37 38 1.439201 CGACACATGTTGCAGCACG 60.439 57.895 5.00 0.00 0.00 5.34
38 39 0.865111 TACGACACATGTTGCAGCAC 59.135 50.000 5.00 0.00 32.66 4.40
39 40 0.865111 GTACGACACATGTTGCAGCA 59.135 50.000 5.46 5.46 32.66 4.41
40 41 0.865111 TGTACGACACATGTTGCAGC 59.135 50.000 0.00 0.00 32.66 5.25
41 42 3.600717 TTTGTACGACACATGTTGCAG 57.399 42.857 0.00 0.00 36.90 4.41
42 43 4.357018 TTTTTGTACGACACATGTTGCA 57.643 36.364 0.00 0.00 36.90 4.08
60 61 8.594881 TTTTGTACAACACATGTCAACTTTTT 57.405 26.923 8.07 0.00 42.70 1.94
61 62 8.594881 TTTTTGTACAACACATGTCAACTTTT 57.405 26.923 8.07 0.00 42.70 2.27
170 174 3.953775 CAGACCTGGCCAACCGGT 61.954 66.667 14.76 14.76 42.95 5.28
195 199 1.952102 CTAGTCGGCGGCCCAAACTA 61.952 60.000 14.55 16.47 31.36 2.24
251 255 0.830648 CTCCTTCCAGTGGGCGATTA 59.169 55.000 9.92 0.00 0.00 1.75
264 310 3.445805 AGTCTTAGCAGTACAGCTCCTTC 59.554 47.826 16.82 6.67 45.26 3.46
265 311 3.436243 AGTCTTAGCAGTACAGCTCCTT 58.564 45.455 16.82 0.00 45.26 3.36
279 325 3.991367 ACCGAACCAAACAGAGTCTTAG 58.009 45.455 0.00 0.00 0.00 2.18
280 326 4.100498 AGAACCGAACCAAACAGAGTCTTA 59.900 41.667 0.00 0.00 0.00 2.10
281 327 3.118371 AGAACCGAACCAAACAGAGTCTT 60.118 43.478 0.00 0.00 0.00 3.01
282 328 2.434702 AGAACCGAACCAAACAGAGTCT 59.565 45.455 0.00 0.00 0.00 3.24
283 329 2.544267 CAGAACCGAACCAAACAGAGTC 59.456 50.000 0.00 0.00 0.00 3.36
284 330 2.561569 CAGAACCGAACCAAACAGAGT 58.438 47.619 0.00 0.00 0.00 3.24
285 331 1.873591 CCAGAACCGAACCAAACAGAG 59.126 52.381 0.00 0.00 0.00 3.35
286 332 1.487142 TCCAGAACCGAACCAAACAGA 59.513 47.619 0.00 0.00 0.00 3.41
287 333 1.961793 TCCAGAACCGAACCAAACAG 58.038 50.000 0.00 0.00 0.00 3.16
288 334 2.649531 ATCCAGAACCGAACCAAACA 57.350 45.000 0.00 0.00 0.00 2.83
289 335 3.568430 AGAAATCCAGAACCGAACCAAAC 59.432 43.478 0.00 0.00 0.00 2.93
290 336 3.827722 AGAAATCCAGAACCGAACCAAA 58.172 40.909 0.00 0.00 0.00 3.28
291 337 3.502123 AGAAATCCAGAACCGAACCAA 57.498 42.857 0.00 0.00 0.00 3.67
292 338 4.627284 TTAGAAATCCAGAACCGAACCA 57.373 40.909 0.00 0.00 0.00 3.67
293 339 5.619309 GCTTTTAGAAATCCAGAACCGAACC 60.619 44.000 0.00 0.00 0.00 3.62
294 340 5.048991 TGCTTTTAGAAATCCAGAACCGAAC 60.049 40.000 0.00 0.00 0.00 3.95
295 341 5.067273 TGCTTTTAGAAATCCAGAACCGAA 58.933 37.500 0.00 0.00 0.00 4.30
296 342 4.647611 TGCTTTTAGAAATCCAGAACCGA 58.352 39.130 0.00 0.00 0.00 4.69
297 343 4.672801 GCTGCTTTTAGAAATCCAGAACCG 60.673 45.833 0.00 0.00 0.00 4.44
298 344 4.460731 AGCTGCTTTTAGAAATCCAGAACC 59.539 41.667 0.00 0.00 0.00 3.62
299 345 5.048434 ACAGCTGCTTTTAGAAATCCAGAAC 60.048 40.000 15.27 0.00 0.00 3.01
300 346 5.048504 CACAGCTGCTTTTAGAAATCCAGAA 60.049 40.000 15.27 0.00 0.00 3.02
301 347 4.456911 CACAGCTGCTTTTAGAAATCCAGA 59.543 41.667 15.27 0.00 0.00 3.86
302 348 4.456911 TCACAGCTGCTTTTAGAAATCCAG 59.543 41.667 15.27 0.00 0.00 3.86
303 349 4.397420 TCACAGCTGCTTTTAGAAATCCA 58.603 39.130 15.27 0.00 0.00 3.41
304 350 5.376854 TTCACAGCTGCTTTTAGAAATCC 57.623 39.130 15.27 0.00 0.00 3.01
305 351 7.698836 TTTTTCACAGCTGCTTTTAGAAATC 57.301 32.000 15.27 0.00 0.00 2.17
306 352 8.146412 AGATTTTTCACAGCTGCTTTTAGAAAT 58.854 29.630 15.27 10.98 0.00 2.17
307 353 7.436080 CAGATTTTTCACAGCTGCTTTTAGAAA 59.564 33.333 15.27 11.50 0.00 2.52
308 354 6.919662 CAGATTTTTCACAGCTGCTTTTAGAA 59.080 34.615 15.27 5.96 0.00 2.10
309 355 6.441274 CAGATTTTTCACAGCTGCTTTTAGA 58.559 36.000 15.27 0.00 0.00 2.10
310 356 5.118203 GCAGATTTTTCACAGCTGCTTTTAG 59.882 40.000 15.27 0.00 46.17 1.85
311 357 4.984161 GCAGATTTTTCACAGCTGCTTTTA 59.016 37.500 15.27 0.00 46.17 1.52
312 358 3.805971 GCAGATTTTTCACAGCTGCTTTT 59.194 39.130 15.27 0.00 46.17 2.27
313 359 3.387397 GCAGATTTTTCACAGCTGCTTT 58.613 40.909 15.27 0.00 46.17 3.51
314 360 3.022607 GCAGATTTTTCACAGCTGCTT 57.977 42.857 15.27 0.00 46.17 3.91
315 361 2.719426 GCAGATTTTTCACAGCTGCT 57.281 45.000 15.27 0.00 46.17 4.24
318 364 2.295349 CCACAGCAGATTTTTCACAGCT 59.705 45.455 0.00 0.00 0.00 4.24
319 365 2.294233 TCCACAGCAGATTTTTCACAGC 59.706 45.455 0.00 0.00 0.00 4.40
320 366 3.817084 TCTCCACAGCAGATTTTTCACAG 59.183 43.478 0.00 0.00 0.00 3.66
321 367 3.819368 TCTCCACAGCAGATTTTTCACA 58.181 40.909 0.00 0.00 0.00 3.58
322 368 4.836125 TTCTCCACAGCAGATTTTTCAC 57.164 40.909 0.00 0.00 0.00 3.18
323 369 4.644234 TGTTTCTCCACAGCAGATTTTTCA 59.356 37.500 0.00 0.00 0.00 2.69
324 370 5.186996 TGTTTCTCCACAGCAGATTTTTC 57.813 39.130 0.00 0.00 0.00 2.29
325 371 5.192327 CTGTTTCTCCACAGCAGATTTTT 57.808 39.130 0.00 0.00 37.96 1.94
326 372 4.843220 CTGTTTCTCCACAGCAGATTTT 57.157 40.909 0.00 0.00 37.96 1.82
334 380 1.202687 TCCACAGCTGTTTCTCCACAG 60.203 52.381 18.94 1.97 46.15 3.66
335 381 0.836606 TCCACAGCTGTTTCTCCACA 59.163 50.000 18.94 0.00 0.00 4.17
336 382 1.967319 TTCCACAGCTGTTTCTCCAC 58.033 50.000 18.94 0.00 0.00 4.02
337 383 2.727123 TTTCCACAGCTGTTTCTCCA 57.273 45.000 18.94 0.00 0.00 3.86
338 384 3.823304 AGATTTTCCACAGCTGTTTCTCC 59.177 43.478 18.94 3.55 0.00 3.71
339 385 4.516698 TCAGATTTTCCACAGCTGTTTCTC 59.483 41.667 18.94 8.40 0.00 2.87
340 386 4.464008 TCAGATTTTCCACAGCTGTTTCT 58.536 39.130 18.94 9.65 0.00 2.52
341 387 4.836125 TCAGATTTTCCACAGCTGTTTC 57.164 40.909 18.94 7.51 0.00 2.78
342 388 4.586001 ACATCAGATTTTCCACAGCTGTTT 59.414 37.500 18.94 0.00 0.00 2.83
343 389 4.022589 CACATCAGATTTTCCACAGCTGTT 60.023 41.667 18.94 0.15 0.00 3.16
344 390 3.504906 CACATCAGATTTTCCACAGCTGT 59.495 43.478 15.25 15.25 0.00 4.40
345 391 3.754850 TCACATCAGATTTTCCACAGCTG 59.245 43.478 13.48 13.48 0.00 4.24
346 392 4.025040 TCACATCAGATTTTCCACAGCT 57.975 40.909 0.00 0.00 0.00 4.24
347 393 4.771590 TTCACATCAGATTTTCCACAGC 57.228 40.909 0.00 0.00 0.00 4.40
348 394 7.205297 ACTTTTTCACATCAGATTTTCCACAG 58.795 34.615 0.00 0.00 0.00 3.66
349 395 7.111247 ACTTTTTCACATCAGATTTTCCACA 57.889 32.000 0.00 0.00 0.00 4.17
350 396 7.492344 ACAACTTTTTCACATCAGATTTTCCAC 59.508 33.333 0.00 0.00 0.00 4.02
351 397 7.555087 ACAACTTTTTCACATCAGATTTTCCA 58.445 30.769 0.00 0.00 0.00 3.53
352 398 9.185192 CTACAACTTTTTCACATCAGATTTTCC 57.815 33.333 0.00 0.00 0.00 3.13
353 399 9.185192 CCTACAACTTTTTCACATCAGATTTTC 57.815 33.333 0.00 0.00 0.00 2.29
354 400 8.695456 ACCTACAACTTTTTCACATCAGATTTT 58.305 29.630 0.00 0.00 0.00 1.82
355 401 8.237811 ACCTACAACTTTTTCACATCAGATTT 57.762 30.769 0.00 0.00 0.00 2.17
356 402 7.502226 TGACCTACAACTTTTTCACATCAGATT 59.498 33.333 0.00 0.00 0.00 2.40
357 403 6.998074 TGACCTACAACTTTTTCACATCAGAT 59.002 34.615 0.00 0.00 0.00 2.90
358 404 6.353323 TGACCTACAACTTTTTCACATCAGA 58.647 36.000 0.00 0.00 0.00 3.27
359 405 6.618287 TGACCTACAACTTTTTCACATCAG 57.382 37.500 0.00 0.00 0.00 2.90
360 406 7.581213 AATGACCTACAACTTTTTCACATCA 57.419 32.000 0.00 0.00 0.00 3.07
361 407 7.382218 CCAAATGACCTACAACTTTTTCACATC 59.618 37.037 0.00 0.00 0.00 3.06
362 408 7.209475 CCAAATGACCTACAACTTTTTCACAT 58.791 34.615 0.00 0.00 0.00 3.21
363 409 6.568869 CCAAATGACCTACAACTTTTTCACA 58.431 36.000 0.00 0.00 0.00 3.58
364 410 5.462068 GCCAAATGACCTACAACTTTTTCAC 59.538 40.000 0.00 0.00 0.00 3.18
365 411 5.127845 TGCCAAATGACCTACAACTTTTTCA 59.872 36.000 0.00 0.00 0.00 2.69
366 412 5.596845 TGCCAAATGACCTACAACTTTTTC 58.403 37.500 0.00 0.00 0.00 2.29
367 413 5.606348 TGCCAAATGACCTACAACTTTTT 57.394 34.783 0.00 0.00 0.00 1.94
368 414 5.606348 TTGCCAAATGACCTACAACTTTT 57.394 34.783 0.00 0.00 0.00 2.27
369 415 5.356426 GTTTGCCAAATGACCTACAACTTT 58.644 37.500 0.00 0.00 0.00 2.66
370 416 4.202212 GGTTTGCCAAATGACCTACAACTT 60.202 41.667 0.00 0.00 34.09 2.66
371 417 3.320826 GGTTTGCCAAATGACCTACAACT 59.679 43.478 0.00 0.00 34.09 3.16
372 418 3.068873 TGGTTTGCCAAATGACCTACAAC 59.931 43.478 0.00 0.00 42.83 3.32
373 419 3.300388 TGGTTTGCCAAATGACCTACAA 58.700 40.909 0.00 0.00 42.83 2.41
374 420 2.890311 CTGGTTTGCCAAATGACCTACA 59.110 45.455 0.00 0.00 45.51 2.74
375 421 2.352715 GCTGGTTTGCCAAATGACCTAC 60.353 50.000 0.00 0.00 45.51 3.18
376 422 1.892474 GCTGGTTTGCCAAATGACCTA 59.108 47.619 0.00 0.00 45.51 3.08
377 423 0.681175 GCTGGTTTGCCAAATGACCT 59.319 50.000 0.00 0.00 45.51 3.85
378 424 0.681175 AGCTGGTTTGCCAAATGACC 59.319 50.000 0.00 0.00 45.51 4.02
379 425 1.340889 TCAGCTGGTTTGCCAAATGAC 59.659 47.619 15.13 0.00 45.51 3.06
380 426 1.702182 TCAGCTGGTTTGCCAAATGA 58.298 45.000 15.13 0.00 45.51 2.57
381 427 2.754946 ATCAGCTGGTTTGCCAAATG 57.245 45.000 15.13 0.00 45.51 2.32
382 428 3.164268 TGTATCAGCTGGTTTGCCAAAT 58.836 40.909 15.13 0.00 45.51 2.32
383 429 2.591923 TGTATCAGCTGGTTTGCCAAA 58.408 42.857 15.13 0.00 45.51 3.28
384 430 2.284754 TGTATCAGCTGGTTTGCCAA 57.715 45.000 15.13 0.00 45.51 4.52
385 431 1.885887 GTTGTATCAGCTGGTTTGCCA 59.114 47.619 15.13 0.00 43.73 4.92
386 432 2.162681 AGTTGTATCAGCTGGTTTGCC 58.837 47.619 15.13 0.00 0.00 4.52
387 433 3.923017 AAGTTGTATCAGCTGGTTTGC 57.077 42.857 15.13 3.72 0.00 3.68
388 434 5.830912 TGAAAAGTTGTATCAGCTGGTTTG 58.169 37.500 15.13 0.00 0.00 2.93
389 435 5.827797 TCTGAAAAGTTGTATCAGCTGGTTT 59.172 36.000 15.13 0.00 40.26 3.27
390 436 5.376625 TCTGAAAAGTTGTATCAGCTGGTT 58.623 37.500 15.13 4.51 40.26 3.67
391 437 4.973168 TCTGAAAAGTTGTATCAGCTGGT 58.027 39.130 15.13 9.93 40.26 4.00
392 438 6.506500 AATCTGAAAAGTTGTATCAGCTGG 57.493 37.500 15.13 0.00 40.26 4.85
393 439 7.327761 CCAAAATCTGAAAAGTTGTATCAGCTG 59.672 37.037 7.63 7.63 40.26 4.24
394 440 7.373493 CCAAAATCTGAAAAGTTGTATCAGCT 58.627 34.615 8.13 0.00 40.26 4.24
395 441 6.089954 GCCAAAATCTGAAAAGTTGTATCAGC 59.910 38.462 8.13 0.00 40.26 4.26
396 442 6.587608 GGCCAAAATCTGAAAAGTTGTATCAG 59.412 38.462 0.00 7.08 41.49 2.90
397 443 6.454795 GGCCAAAATCTGAAAAGTTGTATCA 58.545 36.000 0.00 0.00 0.00 2.15
398 444 5.869344 GGGCCAAAATCTGAAAAGTTGTATC 59.131 40.000 4.39 0.00 0.00 2.24
399 445 5.566627 CGGGCCAAAATCTGAAAAGTTGTAT 60.567 40.000 4.39 0.00 0.00 2.29
400 446 4.261825 CGGGCCAAAATCTGAAAAGTTGTA 60.262 41.667 4.39 0.00 0.00 2.41
401 447 3.492482 CGGGCCAAAATCTGAAAAGTTGT 60.492 43.478 4.39 0.00 0.00 3.32
402 448 3.059166 CGGGCCAAAATCTGAAAAGTTG 58.941 45.455 4.39 0.00 0.00 3.16
403 449 2.547855 GCGGGCCAAAATCTGAAAAGTT 60.548 45.455 4.39 0.00 0.00 2.66
404 450 1.000843 GCGGGCCAAAATCTGAAAAGT 59.999 47.619 4.39 0.00 0.00 2.66
405 451 1.000731 TGCGGGCCAAAATCTGAAAAG 59.999 47.619 4.39 0.00 0.00 2.27
406 452 1.000731 CTGCGGGCCAAAATCTGAAAA 59.999 47.619 4.39 0.00 0.00 2.29
407 453 0.602562 CTGCGGGCCAAAATCTGAAA 59.397 50.000 4.39 0.00 0.00 2.69
408 454 1.876497 GCTGCGGGCCAAAATCTGAA 61.876 55.000 4.39 0.00 34.27 3.02
409 455 2.342650 GCTGCGGGCCAAAATCTGA 61.343 57.895 4.39 0.00 34.27 3.27
410 456 2.182537 GCTGCGGGCCAAAATCTG 59.817 61.111 4.39 0.00 34.27 2.90
411 457 3.443045 CGCTGCGGGCCAAAATCT 61.443 61.111 15.40 0.00 37.74 2.40
412 458 4.496927 CCGCTGCGGGCCAAAATC 62.497 66.667 32.37 0.00 44.15 2.17
422 468 2.290367 TCCAAAATATGATTCCGCTGCG 59.710 45.455 16.34 16.34 0.00 5.18
423 469 3.988379 TCCAAAATATGATTCCGCTGC 57.012 42.857 0.00 0.00 0.00 5.25
424 470 4.741676 GCTTTCCAAAATATGATTCCGCTG 59.258 41.667 0.00 0.00 0.00 5.18
425 471 4.402155 TGCTTTCCAAAATATGATTCCGCT 59.598 37.500 0.00 0.00 0.00 5.52
426 472 4.504097 GTGCTTTCCAAAATATGATTCCGC 59.496 41.667 0.00 0.00 0.00 5.54
427 473 4.734854 CGTGCTTTCCAAAATATGATTCCG 59.265 41.667 0.00 0.00 0.00 4.30
428 474 5.650543 ACGTGCTTTCCAAAATATGATTCC 58.349 37.500 0.00 0.00 0.00 3.01
429 475 5.743872 GGACGTGCTTTCCAAAATATGATTC 59.256 40.000 0.00 0.00 32.82 2.52
430 476 5.418840 AGGACGTGCTTTCCAAAATATGATT 59.581 36.000 2.68 0.00 35.33 2.57
431 477 4.949856 AGGACGTGCTTTCCAAAATATGAT 59.050 37.500 2.68 0.00 35.33 2.45
432 478 4.155826 CAGGACGTGCTTTCCAAAATATGA 59.844 41.667 6.93 0.00 35.33 2.15
433 479 4.155826 TCAGGACGTGCTTTCCAAAATATG 59.844 41.667 6.93 0.00 35.33 1.78
434 480 4.331968 TCAGGACGTGCTTTCCAAAATAT 58.668 39.130 6.93 0.00 35.33 1.28
435 481 3.745799 TCAGGACGTGCTTTCCAAAATA 58.254 40.909 6.93 0.00 35.33 1.40
436 482 2.554032 CTCAGGACGTGCTTTCCAAAAT 59.446 45.455 6.93 0.00 35.33 1.82
437 483 1.946768 CTCAGGACGTGCTTTCCAAAA 59.053 47.619 6.93 0.00 35.33 2.44
438 484 1.593196 CTCAGGACGTGCTTTCCAAA 58.407 50.000 6.93 0.00 35.33 3.28
439 485 0.884704 GCTCAGGACGTGCTTTCCAA 60.885 55.000 6.93 0.00 35.33 3.53
440 486 1.301716 GCTCAGGACGTGCTTTCCA 60.302 57.895 6.93 0.00 35.33 3.53
441 487 1.004440 AGCTCAGGACGTGCTTTCC 60.004 57.895 6.93 0.00 41.66 3.13
442 488 1.905922 GCAGCTCAGGACGTGCTTTC 61.906 60.000 6.93 0.00 42.49 2.62
443 489 1.963338 GCAGCTCAGGACGTGCTTT 60.963 57.895 6.93 0.00 42.49 3.51
444 490 2.358003 GCAGCTCAGGACGTGCTT 60.358 61.111 6.93 0.00 42.49 3.91
445 491 3.309506 AGCAGCTCAGGACGTGCT 61.310 61.111 2.68 2.68 45.21 4.40
446 492 2.358003 AAGCAGCTCAGGACGTGC 60.358 61.111 0.00 0.00 36.10 5.34
447 493 1.739562 GGAAGCAGCTCAGGACGTG 60.740 63.158 0.00 0.00 0.00 4.49
448 494 2.659610 GGAAGCAGCTCAGGACGT 59.340 61.111 0.00 0.00 0.00 4.34
449 495 2.507992 CGGAAGCAGCTCAGGACG 60.508 66.667 0.00 0.00 0.00 4.79
461 507 3.923017 AATCTGAACCAAAAGCGGAAG 57.077 42.857 0.00 0.00 0.00 3.46
462 508 4.367450 CAAAATCTGAACCAAAAGCGGAA 58.633 39.130 0.00 0.00 0.00 4.30
463 509 3.243704 CCAAAATCTGAACCAAAAGCGGA 60.244 43.478 0.00 0.00 0.00 5.54
464 510 3.059166 CCAAAATCTGAACCAAAAGCGG 58.941 45.455 0.00 0.00 0.00 5.52
465 511 2.476241 GCCAAAATCTGAACCAAAAGCG 59.524 45.455 0.00 0.00 0.00 4.68
466 512 3.465871 TGCCAAAATCTGAACCAAAAGC 58.534 40.909 0.00 0.00 0.00 3.51
467 513 3.495753 GCTGCCAAAATCTGAACCAAAAG 59.504 43.478 0.00 0.00 0.00 2.27
468 514 3.465871 GCTGCCAAAATCTGAACCAAAA 58.534 40.909 0.00 0.00 0.00 2.44
469 515 2.545532 CGCTGCCAAAATCTGAACCAAA 60.546 45.455 0.00 0.00 0.00 3.28
470 516 1.000385 CGCTGCCAAAATCTGAACCAA 60.000 47.619 0.00 0.00 0.00 3.67
471 517 0.597568 CGCTGCCAAAATCTGAACCA 59.402 50.000 0.00 0.00 0.00 3.67
472 518 0.109132 CCGCTGCCAAAATCTGAACC 60.109 55.000 0.00 0.00 0.00 3.62
473 519 0.881118 TCCGCTGCCAAAATCTGAAC 59.119 50.000 0.00 0.00 0.00 3.18
474 520 1.838112 ATCCGCTGCCAAAATCTGAA 58.162 45.000 0.00 0.00 0.00 3.02
475 521 1.838112 AATCCGCTGCCAAAATCTGA 58.162 45.000 0.00 0.00 0.00 3.27
476 522 2.660189 AAATCCGCTGCCAAAATCTG 57.340 45.000 0.00 0.00 0.00 2.90
477 523 3.328505 CAAAAATCCGCTGCCAAAATCT 58.671 40.909 0.00 0.00 0.00 2.40
478 524 2.416202 CCAAAAATCCGCTGCCAAAATC 59.584 45.455 0.00 0.00 0.00 2.17
479 525 2.038295 TCCAAAAATCCGCTGCCAAAAT 59.962 40.909 0.00 0.00 0.00 1.82
480 526 1.414181 TCCAAAAATCCGCTGCCAAAA 59.586 42.857 0.00 0.00 0.00 2.44
481 527 1.043816 TCCAAAAATCCGCTGCCAAA 58.956 45.000 0.00 0.00 0.00 3.28
482 528 1.043816 TTCCAAAAATCCGCTGCCAA 58.956 45.000 0.00 0.00 0.00 4.52
483 529 1.204467 GATTCCAAAAATCCGCTGCCA 59.796 47.619 0.00 0.00 0.00 4.92
484 530 1.798813 CGATTCCAAAAATCCGCTGCC 60.799 52.381 0.00 0.00 0.00 4.85
485 531 1.548986 CGATTCCAAAAATCCGCTGC 58.451 50.000 0.00 0.00 0.00 5.25
486 532 1.742831 TCCGATTCCAAAAATCCGCTG 59.257 47.619 0.00 0.00 0.00 5.18
487 533 2.122783 TCCGATTCCAAAAATCCGCT 57.877 45.000 0.00 0.00 0.00 5.52
488 534 3.066760 AGAATCCGATTCCAAAAATCCGC 59.933 43.478 16.09 0.00 40.13 5.54
489 535 4.900635 AGAATCCGATTCCAAAAATCCG 57.099 40.909 16.09 0.00 40.13 4.18
490 536 6.238759 CCAGTAGAATCCGATTCCAAAAATCC 60.239 42.308 16.09 0.00 40.13 3.01
491 537 6.542370 TCCAGTAGAATCCGATTCCAAAAATC 59.458 38.462 16.09 2.04 40.13 2.17
492 538 6.423182 TCCAGTAGAATCCGATTCCAAAAAT 58.577 36.000 16.09 1.32 40.13 1.82
493 539 5.811190 TCCAGTAGAATCCGATTCCAAAAA 58.189 37.500 16.09 0.00 40.13 1.94
494 540 5.429681 TCCAGTAGAATCCGATTCCAAAA 57.570 39.130 16.09 0.00 40.13 2.44
495 541 5.630415 ATCCAGTAGAATCCGATTCCAAA 57.370 39.130 16.09 1.69 40.13 3.28
496 542 5.611374 GAATCCAGTAGAATCCGATTCCAA 58.389 41.667 16.09 3.98 40.13 3.53
497 543 4.262036 CGAATCCAGTAGAATCCGATTCCA 60.262 45.833 16.09 1.41 40.13 3.53
498 544 4.238514 CGAATCCAGTAGAATCCGATTCC 58.761 47.826 16.09 3.83 40.13 3.01
499 545 4.872664 ACGAATCCAGTAGAATCCGATTC 58.127 43.478 12.51 12.51 39.56 2.52
500 546 4.939052 ACGAATCCAGTAGAATCCGATT 57.061 40.909 0.00 0.00 0.00 3.34
501 547 4.585162 AGAACGAATCCAGTAGAATCCGAT 59.415 41.667 0.00 0.00 0.00 4.18
502 548 3.952323 AGAACGAATCCAGTAGAATCCGA 59.048 43.478 0.00 0.00 0.00 4.55
503 549 4.308899 AGAACGAATCCAGTAGAATCCG 57.691 45.455 0.00 0.00 0.00 4.18
504 550 5.294552 CCAAAGAACGAATCCAGTAGAATCC 59.705 44.000 0.00 0.00 0.00 3.01
505 551 5.875359 ACCAAAGAACGAATCCAGTAGAATC 59.125 40.000 0.00 0.00 0.00 2.52
506 552 5.805728 ACCAAAGAACGAATCCAGTAGAAT 58.194 37.500 0.00 0.00 0.00 2.40
507 553 5.223449 ACCAAAGAACGAATCCAGTAGAA 57.777 39.130 0.00 0.00 0.00 2.10
508 554 4.884668 ACCAAAGAACGAATCCAGTAGA 57.115 40.909 0.00 0.00 0.00 2.59
509 555 4.994852 TGAACCAAAGAACGAATCCAGTAG 59.005 41.667 0.00 0.00 0.00 2.57
510 556 4.963373 TGAACCAAAGAACGAATCCAGTA 58.037 39.130 0.00 0.00 0.00 2.74
511 557 3.815401 CTGAACCAAAGAACGAATCCAGT 59.185 43.478 0.00 0.00 0.00 4.00
512 558 4.065088 TCTGAACCAAAGAACGAATCCAG 58.935 43.478 0.00 0.00 0.00 3.86
513 559 4.079980 TCTGAACCAAAGAACGAATCCA 57.920 40.909 0.00 0.00 0.00 3.41
514 560 5.412904 AGAATCTGAACCAAAGAACGAATCC 59.587 40.000 0.00 0.00 0.00 3.01
515 561 6.310197 CAGAATCTGAACCAAAGAACGAATC 58.690 40.000 3.77 0.00 32.44 2.52
516 562 5.335191 GCAGAATCTGAACCAAAGAACGAAT 60.335 40.000 15.38 0.00 32.44 3.34
517 563 4.024048 GCAGAATCTGAACCAAAGAACGAA 60.024 41.667 15.38 0.00 32.44 3.85
518 564 3.498397 GCAGAATCTGAACCAAAGAACGA 59.502 43.478 15.38 0.00 32.44 3.85
519 565 3.499918 AGCAGAATCTGAACCAAAGAACG 59.500 43.478 15.38 0.00 32.44 3.95
520 566 4.791974 CAGCAGAATCTGAACCAAAGAAC 58.208 43.478 15.38 0.00 36.19 3.01
521 567 3.254166 GCAGCAGAATCTGAACCAAAGAA 59.746 43.478 15.38 0.00 36.19 2.52
522 568 2.816087 GCAGCAGAATCTGAACCAAAGA 59.184 45.455 15.38 0.00 36.19 2.52
523 569 2.555325 TGCAGCAGAATCTGAACCAAAG 59.445 45.455 15.38 0.00 36.19 2.77
524 570 2.294233 GTGCAGCAGAATCTGAACCAAA 59.706 45.455 15.38 0.00 36.77 3.28
525 571 1.881973 GTGCAGCAGAATCTGAACCAA 59.118 47.619 15.38 0.00 36.77 3.67
526 572 1.527034 GTGCAGCAGAATCTGAACCA 58.473 50.000 15.38 3.87 36.77 3.67
527 573 0.445436 CGTGCAGCAGAATCTGAACC 59.555 55.000 15.38 1.15 39.04 3.62
528 574 0.445436 CCGTGCAGCAGAATCTGAAC 59.555 55.000 15.38 5.24 38.89 3.18
529 575 1.300971 GCCGTGCAGCAGAATCTGAA 61.301 55.000 15.38 0.00 36.19 3.02
530 576 1.742880 GCCGTGCAGCAGAATCTGA 60.743 57.895 15.38 0.00 36.19 3.27
531 577 2.036571 TGCCGTGCAGCAGAATCTG 61.037 57.895 5.78 5.78 38.00 2.90
532 578 2.348620 TGCCGTGCAGCAGAATCT 59.651 55.556 0.00 0.00 38.00 2.40
541 587 4.783621 GGATCCTGCTGCCGTGCA 62.784 66.667 3.84 0.00 41.05 4.57
546 592 1.806461 TATCGACGGATCCTGCTGCC 61.806 60.000 10.75 0.00 34.00 4.85
547 593 0.032130 TTATCGACGGATCCTGCTGC 59.968 55.000 10.75 0.00 34.00 5.25
548 594 2.509052 TTTATCGACGGATCCTGCTG 57.491 50.000 10.75 0.00 34.00 4.41
549 595 2.803492 GCTTTTATCGACGGATCCTGCT 60.803 50.000 10.75 0.00 34.00 4.24
550 596 1.527311 GCTTTTATCGACGGATCCTGC 59.473 52.381 10.75 0.04 34.00 4.85
551 597 2.797156 CAGCTTTTATCGACGGATCCTG 59.203 50.000 10.75 6.11 34.00 3.86
552 598 2.693591 TCAGCTTTTATCGACGGATCCT 59.306 45.455 10.75 0.00 34.00 3.24
553 599 3.093717 TCAGCTTTTATCGACGGATCC 57.906 47.619 0.00 0.00 34.00 3.36
554 600 3.245519 GGTTCAGCTTTTATCGACGGATC 59.754 47.826 0.00 0.00 34.00 3.36
555 601 3.195661 GGTTCAGCTTTTATCGACGGAT 58.804 45.455 0.00 0.00 36.65 4.18
556 602 2.028839 TGGTTCAGCTTTTATCGACGGA 60.029 45.455 0.00 0.00 0.00 4.69
557 603 2.343101 TGGTTCAGCTTTTATCGACGG 58.657 47.619 0.00 0.00 0.00 4.79
558 604 3.181520 CCTTGGTTCAGCTTTTATCGACG 60.182 47.826 0.00 0.00 0.00 5.12
559 605 3.426292 GCCTTGGTTCAGCTTTTATCGAC 60.426 47.826 0.00 0.00 0.00 4.20
560 606 2.747446 GCCTTGGTTCAGCTTTTATCGA 59.253 45.455 0.00 0.00 0.00 3.59
561 607 2.159379 GGCCTTGGTTCAGCTTTTATCG 60.159 50.000 0.00 0.00 0.00 2.92
562 608 3.092301 AGGCCTTGGTTCAGCTTTTATC 58.908 45.455 0.00 0.00 0.00 1.75
563 609 3.175438 AGGCCTTGGTTCAGCTTTTAT 57.825 42.857 0.00 0.00 0.00 1.40
564 610 2.675658 AGGCCTTGGTTCAGCTTTTA 57.324 45.000 0.00 0.00 0.00 1.52
565 611 2.675658 TAGGCCTTGGTTCAGCTTTT 57.324 45.000 12.58 0.00 0.00 2.27
566 612 2.519013 CTTAGGCCTTGGTTCAGCTTT 58.481 47.619 12.58 0.00 0.00 3.51
567 613 1.888391 GCTTAGGCCTTGGTTCAGCTT 60.888 52.381 12.58 0.00 0.00 3.74
568 614 0.322906 GCTTAGGCCTTGGTTCAGCT 60.323 55.000 12.58 0.00 0.00 4.24
569 615 2.184323 GCTTAGGCCTTGGTTCAGC 58.816 57.895 12.58 5.76 0.00 4.26
580 626 0.469917 TGCTCATGGTAGGCTTAGGC 59.530 55.000 0.00 0.00 37.82 3.93
581 627 1.539065 CGTGCTCATGGTAGGCTTAGG 60.539 57.143 0.00 0.00 0.00 2.69
927 973 4.572571 TTGCCGTGGTGGTGGTCC 62.573 66.667 0.00 0.00 41.21 4.46
1056 1107 1.929169 CAGTCGATGATGATGTTGCGT 59.071 47.619 0.00 0.00 0.00 5.24
1064 1115 2.106938 GGCGGCAGTCGATGATGA 59.893 61.111 3.07 0.00 42.43 2.92
1119 1170 1.616994 GGCTCCCACACAAATAGGCTT 60.617 52.381 0.00 0.00 0.00 4.35
1274 1335 4.382754 CGGCAACTCTTGTATTTTCTTTGC 59.617 41.667 0.00 0.00 37.87 3.68
1294 1367 0.665298 GATGAGAAAAGGCATCCGGC 59.335 55.000 0.00 0.00 43.74 6.13
1324 1397 5.771469 CAGTGTTTTGATGTTGCTCCATAA 58.229 37.500 0.00 0.00 0.00 1.90
1430 1524 3.213206 TGGCATATTGAGGATGGTCAC 57.787 47.619 0.00 0.00 0.00 3.67
1515 2431 9.740710 GTAATAATCCTTAATTGGTCATAGCCT 57.259 33.333 0.00 0.00 0.00 4.58
1940 3041 6.049149 CGATCCAAGAGGTACAACACATAAT 58.951 40.000 0.00 0.00 35.89 1.28
1951 3052 1.756690 GCCTACCCGATCCAAGAGGTA 60.757 57.143 0.00 0.00 35.89 3.08
2049 3150 2.747460 CCATGTCACCTGCCACCG 60.747 66.667 0.00 0.00 0.00 4.94
2050 3151 1.973281 CACCATGTCACCTGCCACC 60.973 63.158 0.00 0.00 0.00 4.61
2051 3152 1.073025 TCACCATGTCACCTGCCAC 59.927 57.895 0.00 0.00 0.00 5.01
2052 3153 1.073025 GTCACCATGTCACCTGCCA 59.927 57.895 0.00 0.00 0.00 4.92
2053 3154 2.034879 CGTCACCATGTCACCTGCC 61.035 63.158 0.00 0.00 0.00 4.85
2054 3155 2.034879 CCGTCACCATGTCACCTGC 61.035 63.158 0.00 0.00 0.00 4.85
2055 3156 0.950555 CACCGTCACCATGTCACCTG 60.951 60.000 0.00 0.00 0.00 4.00
2056 3157 1.371183 CACCGTCACCATGTCACCT 59.629 57.895 0.00 0.00 0.00 4.00
2057 3158 1.671054 CCACCGTCACCATGTCACC 60.671 63.158 0.00 0.00 0.00 4.02
2058 3159 2.325082 GCCACCGTCACCATGTCAC 61.325 63.158 0.00 0.00 0.00 3.67
2059 3160 2.031919 GCCACCGTCACCATGTCA 59.968 61.111 0.00 0.00 0.00 3.58
2060 3161 2.031919 TGCCACCGTCACCATGTC 59.968 61.111 0.00 0.00 0.00 3.06
2061 3162 2.032528 CTGCCACCGTCACCATGT 59.967 61.111 0.00 0.00 0.00 3.21
2062 3163 2.747460 CCTGCCACCGTCACCATG 60.747 66.667 0.00 0.00 0.00 3.66
2063 3164 3.249189 ACCTGCCACCGTCACCAT 61.249 61.111 0.00 0.00 0.00 3.55
2064 3165 4.248842 CACCTGCCACCGTCACCA 62.249 66.667 0.00 0.00 0.00 4.17
2065 3166 3.254024 ATCACCTGCCACCGTCACC 62.254 63.158 0.00 0.00 0.00 4.02
2067 3168 2.347114 CATCACCTGCCACCGTCA 59.653 61.111 0.00 0.00 0.00 4.35
2432 3578 3.023832 TGTGGCTGTCTGATTCTATCGA 58.976 45.455 0.00 0.00 0.00 3.59
2737 3887 3.070476 TGATAATGGTTGACAGCAGCA 57.930 42.857 0.00 0.00 32.71 4.41
2890 4045 4.074627 TCCACAATTGTCGTTGACCTTA 57.925 40.909 8.48 0.00 33.37 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.