Multiple sequence alignment - TraesCS3D01G438200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G438200 chr3D 100.000 2975 0 0 1 2975 548964151 548967125 0.000000e+00 5494.0
1 TraesCS3D01G438200 chr3D 81.287 513 49 17 1199 1711 45043499 45043034 3.620000e-99 372.0
2 TraesCS3D01G438200 chr3D 84.756 328 42 5 2230 2556 549042750 549043070 3.700000e-84 322.0
3 TraesCS3D01G438200 chr3D 83.459 133 20 2 1040 1171 548674811 548674680 4.030000e-24 122.0
4 TraesCS3D01G438200 chr3D 87.912 91 10 1 1587 1677 285172274 285172185 4.060000e-19 106.0
5 TraesCS3D01G438200 chr3A 93.480 1641 71 8 593 2217 686253671 686255291 0.000000e+00 2405.0
6 TraesCS3D01G438200 chr3A 91.837 343 16 6 2228 2562 686255540 686255878 4.490000e-128 468.0
7 TraesCS3D01G438200 chr3A 85.981 321 38 4 2228 2547 686419997 686420311 1.320000e-88 337.0
8 TraesCS3D01G438200 chr3A 85.670 321 38 5 2228 2547 686487065 686487378 6.150000e-87 331.0
9 TraesCS3D01G438200 chr3A 85.271 129 19 0 1043 1171 686158185 686158057 1.860000e-27 134.0
10 TraesCS3D01G438200 chr3A 84.496 129 20 0 1043 1171 686162876 686162748 8.660000e-26 128.0
11 TraesCS3D01G438200 chr3B 91.541 1395 71 16 649 2022 728198845 728200213 0.000000e+00 1879.0
12 TraesCS3D01G438200 chr3B 79.491 668 115 12 1 653 728195709 728196369 3.500000e-124 455.0
13 TraesCS3D01G438200 chr3B 85.427 398 42 9 2155 2541 728200381 728200773 1.660000e-107 399.0
14 TraesCS3D01G438200 chr3B 87.556 225 24 1 2228 2452 728457299 728457519 1.060000e-64 257.0
15 TraesCS3D01G438200 chr7D 87.084 511 45 2 1199 1709 72914381 72914870 2.590000e-155 558.0
16 TraesCS3D01G438200 chr7D 85.672 335 32 7 1199 1533 153764353 153764035 3.670000e-89 339.0
17 TraesCS3D01G438200 chr6D 87.084 511 45 2 1199 1709 38539602 38540091 2.590000e-155 558.0
18 TraesCS3D01G438200 chr5D 86.282 503 48 2 1199 1701 51641000 51641481 7.300000e-146 527.0
19 TraesCS3D01G438200 chr5D 84.120 233 25 6 2567 2790 464401556 464401327 6.460000e-52 215.0
20 TraesCS3D01G438200 chr2B 82.261 513 44 18 1199 1711 132336202 132336667 1.660000e-107 399.0
21 TraesCS3D01G438200 chr2B 95.349 43 2 0 2563 2605 544760045 544760087 5.320000e-08 69.4
22 TraesCS3D01G438200 chr6B 82.877 438 48 12 2563 2975 28021226 28021661 4.680000e-98 368.0
23 TraesCS3D01G438200 chr7A 85.674 356 40 6 2558 2904 694112841 694113194 6.060000e-97 364.0
24 TraesCS3D01G438200 chr7A 79.922 513 56 20 1199 1711 669866234 669866699 1.710000e-87 333.0
25 TraesCS3D01G438200 chr7B 84.555 382 36 10 2616 2975 623814055 623814435 1.010000e-94 357.0
26 TraesCS3D01G438200 chr1B 82.840 338 42 12 2651 2975 301799646 301799312 3.750000e-74 289.0
27 TraesCS3D01G438200 chr1B 89.781 137 8 2 2561 2691 301799887 301799751 1.420000e-38 171.0
28 TraesCS3D01G438200 chr1B 88.119 101 6 2 2564 2658 301800358 301800258 6.740000e-22 115.0
29 TraesCS3D01G438200 chr4A 93.617 47 3 0 2553 2599 729783717 729783763 1.480000e-08 71.3
30 TraesCS3D01G438200 chr1D 100.000 37 0 0 2566 2602 394447572 394447536 5.320000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G438200 chr3D 548964151 548967125 2974 False 5494.0 5494 100.000000 1 2975 1 chr3D.!!$F1 2974
1 TraesCS3D01G438200 chr3A 686253671 686255878 2207 False 1436.5 2405 92.658500 593 2562 2 chr3A.!!$F3 1969
2 TraesCS3D01G438200 chr3B 728195709 728200773 5064 False 911.0 1879 85.486333 1 2541 3 chr3B.!!$F2 2540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.037419 AATCAAAACACCCATGCCGC 60.037 50.0 0.0 0.0 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 4530 1.150567 CTTCCAGGCGAATCAGAGCG 61.151 60.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.810030 GACCCATCGAAGACACGGC 60.810 63.158 0.00 0.00 42.51 5.68
28 29 1.734477 CGAAGACACGGCTCCACAG 60.734 63.158 0.00 0.00 0.00 3.66
29 30 1.374758 GAAGACACGGCTCCACAGG 60.375 63.158 0.00 0.00 0.00 4.00
37 38 4.459089 GCTCCACAGGTCCTCCGC 62.459 72.222 0.00 0.00 39.05 5.54
38 39 3.775654 CTCCACAGGTCCTCCGCC 61.776 72.222 0.00 0.00 39.05 6.13
59 60 2.027625 CGAGAAACACGCCACCTCC 61.028 63.158 0.00 0.00 0.00 4.30
66 67 0.606401 ACACGCCACCTCCAAATGAG 60.606 55.000 0.00 0.00 41.07 2.90
69 70 1.651240 CGCCACCTCCAAATGAGCAG 61.651 60.000 0.00 0.00 39.98 4.24
75 76 3.059097 ACCTCCAAATGAGCAGGGATAT 58.941 45.455 0.00 0.00 39.98 1.63
76 77 3.073650 ACCTCCAAATGAGCAGGGATATC 59.926 47.826 0.00 0.00 39.98 1.63
81 82 2.317371 ATGAGCAGGGATATCCGAGT 57.683 50.000 15.69 0.00 41.52 4.18
85 86 2.750712 GAGCAGGGATATCCGAGTAGAC 59.249 54.545 15.69 0.00 41.52 2.59
94 95 6.380274 GGGATATCCGAGTAGACCATTATTCA 59.620 42.308 15.69 0.00 36.71 2.57
99 100 6.978338 TCCGAGTAGACCATTATTCATACAC 58.022 40.000 0.00 0.00 0.00 2.90
101 102 7.040617 TCCGAGTAGACCATTATTCATACACTC 60.041 40.741 0.00 0.00 0.00 3.51
102 103 6.797513 CGAGTAGACCATTATTCATACACTCG 59.202 42.308 0.00 0.00 43.55 4.18
109 110 2.779755 ATTCATACACTCGGGCAACA 57.220 45.000 0.00 0.00 39.74 3.33
112 113 0.321210 CATACACTCGGGCAACACCA 60.321 55.000 0.00 0.00 42.05 4.17
115 116 3.484806 ACTCGGGCAACACCACCA 61.485 61.111 0.00 0.00 42.05 4.17
117 118 4.920112 TCGGGCAACACCACCACG 62.920 66.667 0.00 0.00 42.05 4.94
120 121 3.645975 GGCAACACCACCACGTCG 61.646 66.667 0.00 0.00 38.86 5.12
121 122 4.307908 GCAACACCACCACGTCGC 62.308 66.667 0.00 0.00 0.00 5.19
160 161 5.443283 ACGAAAACTCCCTAAAGAAAACCT 58.557 37.500 0.00 0.00 0.00 3.50
164 165 7.255486 CGAAAACTCCCTAAAGAAAACCTGAAT 60.255 37.037 0.00 0.00 0.00 2.57
169 170 7.563556 ACTCCCTAAAGAAAACCTGAATCAAAA 59.436 33.333 0.00 0.00 0.00 2.44
178 179 2.299867 ACCTGAATCAAAACACCCATGC 59.700 45.455 0.00 0.00 0.00 4.06
179 180 2.354003 CCTGAATCAAAACACCCATGCC 60.354 50.000 0.00 0.00 0.00 4.40
180 181 1.271934 TGAATCAAAACACCCATGCCG 59.728 47.619 0.00 0.00 0.00 5.69
181 182 0.037419 AATCAAAACACCCATGCCGC 60.037 50.000 0.00 0.00 0.00 6.53
183 184 0.250945 TCAAAACACCCATGCCGCTA 60.251 50.000 0.00 0.00 0.00 4.26
189 190 1.419762 ACACCCATGCCGCTATATGAA 59.580 47.619 0.00 0.00 0.00 2.57
190 191 2.158682 ACACCCATGCCGCTATATGAAA 60.159 45.455 0.00 0.00 0.00 2.69
194 195 4.218417 ACCCATGCCGCTATATGAAAAATC 59.782 41.667 0.00 0.00 0.00 2.17
196 197 4.380867 CCATGCCGCTATATGAAAAATCCC 60.381 45.833 0.00 0.00 0.00 3.85
216 217 0.826715 GGGCTGATGTCTAGCTCACA 59.173 55.000 0.00 0.00 41.33 3.58
218 219 1.569708 GCTGATGTCTAGCTCACAGC 58.430 55.000 6.97 6.97 42.44 4.40
223 224 1.139947 GTCTAGCTCACAGCCGTCC 59.860 63.158 0.00 0.00 43.77 4.79
228 229 2.029844 GCTCACAGCCGTCCAGAAC 61.030 63.158 0.00 0.00 34.48 3.01
236 237 2.390599 CCGTCCAGAACCATGCACG 61.391 63.158 0.00 0.00 0.00 5.34
237 238 1.374125 CGTCCAGAACCATGCACGA 60.374 57.895 0.00 0.00 0.00 4.35
239 240 0.517316 GTCCAGAACCATGCACGAAC 59.483 55.000 0.00 0.00 0.00 3.95
240 241 0.396435 TCCAGAACCATGCACGAACT 59.604 50.000 0.00 0.00 0.00 3.01
248 249 2.271800 CCATGCACGAACTACCTCTTC 58.728 52.381 0.00 0.00 0.00 2.87
251 252 3.299340 TGCACGAACTACCTCTTCTTC 57.701 47.619 0.00 0.00 0.00 2.87
252 253 2.626266 TGCACGAACTACCTCTTCTTCA 59.374 45.455 0.00 0.00 0.00 3.02
262 263 8.602472 AACTACCTCTTCTTCAATGATCTAGT 57.398 34.615 0.00 0.00 0.00 2.57
268 269 4.679373 TCTTCAATGATCTAGTCAGGCC 57.321 45.455 0.00 0.00 40.92 5.19
271 272 3.646534 TCAATGATCTAGTCAGGCCAGA 58.353 45.455 5.01 0.00 40.92 3.86
288 289 2.283298 CAGACCACCAATGAAGATCGG 58.717 52.381 0.00 0.00 0.00 4.18
290 291 0.744414 ACCACCAATGAAGATCGGCG 60.744 55.000 0.00 0.00 0.00 6.46
291 292 1.353103 CACCAATGAAGATCGGCGC 59.647 57.895 0.00 0.00 0.00 6.53
292 293 2.173669 ACCAATGAAGATCGGCGCG 61.174 57.895 0.00 0.00 0.00 6.86
293 294 2.052766 CAATGAAGATCGGCGCGC 60.053 61.111 25.94 25.94 0.00 6.86
294 295 2.202932 AATGAAGATCGGCGCGCT 60.203 55.556 32.29 11.92 0.00 5.92
296 297 3.723235 ATGAAGATCGGCGCGCTGT 62.723 57.895 36.58 24.79 0.00 4.40
304 305 4.971125 GGCGCGCTGTATCCCTCC 62.971 72.222 32.29 5.91 0.00 4.30
308 309 4.301027 CGCTGTATCCCTCCGGCC 62.301 72.222 0.00 0.00 0.00 6.13
310 311 4.301027 CTGTATCCCTCCGGCCGC 62.301 72.222 22.85 3.47 0.00 6.53
325 326 1.890041 CCGCCGTTGACTTCACCAA 60.890 57.895 0.00 0.00 0.00 3.67
332 333 0.179234 TTGACTTCACCAACGCCTCA 59.821 50.000 0.00 0.00 0.00 3.86
335 336 1.880027 GACTTCACCAACGCCTCAATT 59.120 47.619 0.00 0.00 0.00 2.32
341 342 0.813184 CCAACGCCTCAATTGAGCAT 59.187 50.000 27.01 13.05 40.75 3.79
342 343 1.202222 CCAACGCCTCAATTGAGCATC 60.202 52.381 27.01 17.07 40.75 3.91
346 347 2.028130 CCTCAATTGAGCATCGCCC 58.972 57.895 27.01 0.00 40.75 6.13
348 349 1.078497 TCAATTGAGCATCGCCCGT 60.078 52.632 3.38 0.00 38.61 5.28
349 350 0.676466 TCAATTGAGCATCGCCCGTT 60.676 50.000 3.38 0.00 38.61 4.44
350 351 0.523968 CAATTGAGCATCGCCCGTTG 60.524 55.000 0.00 0.00 38.61 4.10
353 354 0.886938 TTGAGCATCGCCCGTTGAAA 60.887 50.000 3.18 0.00 38.61 2.69
354 355 1.298157 TGAGCATCGCCCGTTGAAAG 61.298 55.000 3.18 0.00 38.61 2.62
364 365 2.556287 GTTGAAAGCCGCCACTCG 59.444 61.111 0.00 0.00 38.08 4.18
380 381 3.551863 CCACTCGAGCATACATCTCCTTC 60.552 52.174 13.61 0.00 0.00 3.46
381 382 2.625790 ACTCGAGCATACATCTCCTTCC 59.374 50.000 13.61 0.00 0.00 3.46
382 383 1.964223 TCGAGCATACATCTCCTTCCC 59.036 52.381 0.00 0.00 0.00 3.97
389 390 0.419459 ACATCTCCTTCCCTGTCCCT 59.581 55.000 0.00 0.00 0.00 4.20
390 391 1.203492 ACATCTCCTTCCCTGTCCCTT 60.203 52.381 0.00 0.00 0.00 3.95
391 392 1.488393 CATCTCCTTCCCTGTCCCTTC 59.512 57.143 0.00 0.00 0.00 3.46
392 393 0.252742 TCTCCTTCCCTGTCCCTTCC 60.253 60.000 0.00 0.00 0.00 3.46
393 394 0.547712 CTCCTTCCCTGTCCCTTCCA 60.548 60.000 0.00 0.00 0.00 3.53
394 395 0.547712 TCCTTCCCTGTCCCTTCCAG 60.548 60.000 0.00 0.00 0.00 3.86
413 425 3.680196 ACCTCCTCGGCACCCCTA 61.680 66.667 0.00 0.00 35.61 3.53
419 431 4.892291 TCGGCACCCCTATCCCCC 62.892 72.222 0.00 0.00 0.00 5.40
428 440 1.490867 CCCCTATCCCCCACCCAATAT 60.491 57.143 0.00 0.00 0.00 1.28
438 450 0.478507 CACCCAATATGACCTCCCCC 59.521 60.000 0.00 0.00 0.00 5.40
439 451 1.060163 ACCCAATATGACCTCCCCCG 61.060 60.000 0.00 0.00 0.00 5.73
440 452 1.073199 CCAATATGACCTCCCCCGC 59.927 63.158 0.00 0.00 0.00 6.13
441 453 1.418908 CCAATATGACCTCCCCCGCT 61.419 60.000 0.00 0.00 0.00 5.52
442 454 1.348064 CAATATGACCTCCCCCGCTA 58.652 55.000 0.00 0.00 0.00 4.26
443 455 1.697432 CAATATGACCTCCCCCGCTAA 59.303 52.381 0.00 0.00 0.00 3.09
444 456 1.349067 ATATGACCTCCCCCGCTAAC 58.651 55.000 0.00 0.00 0.00 2.34
445 457 1.111116 TATGACCTCCCCCGCTAACG 61.111 60.000 0.00 0.00 39.67 3.18
477 489 2.218454 TCGGGTGACGGTTGGGATT 61.218 57.895 0.00 0.00 44.45 3.01
483 495 0.676736 TGACGGTTGGGATTTTTGGC 59.323 50.000 0.00 0.00 0.00 4.52
488 500 2.936912 TTGGGATTTTTGGCGCCGG 61.937 57.895 23.90 0.00 0.00 6.13
507 519 1.337118 GCCAGGACCCTATCTCTCTG 58.663 60.000 0.00 0.00 0.00 3.35
511 523 3.499563 CCAGGACCCTATCTCTCTGGTAG 60.500 56.522 0.00 0.00 37.55 3.18
516 528 3.161866 CCCTATCTCTCTGGTAGGAAGC 58.838 54.545 3.74 0.00 37.73 3.86
523 535 2.693591 TCTCTGGTAGGAAGCGTTATGG 59.306 50.000 0.00 0.00 0.00 2.74
530 542 2.159382 AGGAAGCGTTATGGGTGTTTG 58.841 47.619 0.00 0.00 0.00 2.93
540 552 1.261480 TGGGTGTTTGTTTGCACACT 58.739 45.000 4.37 0.00 42.57 3.55
544 556 3.120373 GGGTGTTTGTTTGCACACTTTTG 60.120 43.478 4.37 0.00 42.57 2.44
545 557 3.120373 GGTGTTTGTTTGCACACTTTTGG 60.120 43.478 4.37 0.00 42.57 3.28
554 566 0.104671 CACACTTTTGGCCCTTGTGG 59.895 55.000 16.05 0.00 35.05 4.17
574 586 5.658634 TGTGGCTATTATACCAATTGGCAAA 59.341 36.000 24.79 15.68 38.92 3.68
575 587 5.983118 GTGGCTATTATACCAATTGGCAAAC 59.017 40.000 24.79 7.13 38.92 2.93
576 588 5.896678 TGGCTATTATACCAATTGGCAAACT 59.103 36.000 24.79 7.09 39.32 2.66
577 589 6.382570 TGGCTATTATACCAATTGGCAAACTT 59.617 34.615 24.79 6.32 39.32 2.66
578 590 7.093112 TGGCTATTATACCAATTGGCAAACTTT 60.093 33.333 24.79 5.55 39.32 2.66
579 591 7.224557 GGCTATTATACCAATTGGCAAACTTTG 59.775 37.037 24.79 4.43 39.32 2.77
580 592 7.224557 GCTATTATACCAATTGGCAAACTTTGG 59.775 37.037 24.79 23.11 43.41 3.28
583 596 3.041946 ACCAATTGGCAAACTTTGGGTA 58.958 40.909 26.43 0.00 42.34 3.69
592 605 9.600432 ATTGGCAAACTTTGGGTATATATATGT 57.400 29.630 3.01 0.00 0.00 2.29
679 3172 4.377897 GGAGACAAAAAGGAAACGAGAGA 58.622 43.478 0.00 0.00 0.00 3.10
711 3204 0.105964 TCATCCACCCGAATAAGCCG 59.894 55.000 0.00 0.00 0.00 5.52
714 3207 2.469516 CCACCCGAATAAGCCGTGC 61.470 63.158 0.00 0.00 0.00 5.34
758 3251 5.713861 ACAAGGAAGGAGAAGAAAATGATGG 59.286 40.000 0.00 0.00 0.00 3.51
810 3304 0.250727 ACCAAACAGCACGGCATACT 60.251 50.000 0.00 0.00 0.00 2.12
864 3358 2.158813 TGACCAACCAAAGACTCCAGAC 60.159 50.000 0.00 0.00 0.00 3.51
951 3453 3.540014 CACAAGCGCGCTCTCTCG 61.540 66.667 36.57 21.64 0.00 4.04
960 3462 2.202676 GCTCTCTCGGCGACCAAG 60.203 66.667 4.99 4.03 0.00 3.61
969 3471 4.858680 GCGACCAAGCCCCCTAGC 62.859 72.222 0.00 0.00 0.00 3.42
971 3473 1.760875 CGACCAAGCCCCCTAGCTA 60.761 63.158 0.00 0.00 44.11 3.32
972 3474 1.749334 CGACCAAGCCCCCTAGCTAG 61.749 65.000 14.20 14.20 44.11 3.42
973 3475 2.046009 GACCAAGCCCCCTAGCTAGC 62.046 65.000 15.74 6.62 44.11 3.42
974 3476 2.823758 CCAAGCCCCCTAGCTAGCC 61.824 68.421 15.74 3.34 44.11 3.93
975 3477 2.844839 AAGCCCCCTAGCTAGCCG 60.845 66.667 15.74 7.13 44.11 5.52
1114 3633 3.916392 CTGTTCGCGCCGGTCTTCT 62.916 63.158 1.90 0.00 0.00 2.85
1233 3752 2.888863 CTGCTCGTCCTCCACCTC 59.111 66.667 0.00 0.00 0.00 3.85
1252 3771 2.982130 CCTACCTCGCCAGCAAGT 59.018 61.111 0.00 0.00 0.00 3.16
1256 3775 2.501223 TACCTCGCCAGCAAGTTCGG 62.501 60.000 0.00 0.00 0.00 4.30
1257 3776 3.121030 CTCGCCAGCAAGTTCGGG 61.121 66.667 0.00 0.00 0.00 5.14
1426 3945 1.365267 GTCCCGGCGTATTACCTCC 59.635 63.158 6.01 0.00 0.00 4.30
1599 4118 4.821589 GCGACAGAGGAAGGCGGG 62.822 72.222 0.00 0.00 0.00 6.13
1743 4268 3.339464 CCGGTGTACGCGTTTGCA 61.339 61.111 20.78 12.12 42.97 4.08
1747 4272 1.492319 GGTGTACGCGTTTGCACTGA 61.492 55.000 27.47 5.75 42.97 3.41
1790 4315 1.799258 CTTTTGCTCGGCAGCCTGTT 61.799 55.000 10.54 0.00 46.26 3.16
1831 4356 2.580867 GCGTGCAGCTCTACTCCG 60.581 66.667 0.00 0.00 44.04 4.63
2103 4642 4.469586 TGTAGATAGTGGAAATGGCACTCA 59.530 41.667 0.00 0.00 0.00 3.41
2159 4755 3.052082 CGTGAGCTGCCCAGTTGG 61.052 66.667 0.00 0.00 37.09 3.77
2173 4769 2.618709 CCAGTTGGAGTCCAAACTTCAC 59.381 50.000 26.19 13.43 45.73 3.18
2314 5150 5.931146 TGAAAATTGCAGTTTGTGTTCAGTT 59.069 32.000 8.06 0.00 0.00 3.16
2316 5152 2.823196 TGCAGTTTGTGTTCAGTTCG 57.177 45.000 0.00 0.00 0.00 3.95
2318 5154 1.400494 GCAGTTTGTGTTCAGTTCGGT 59.600 47.619 0.00 0.00 0.00 4.69
2319 5155 2.159435 GCAGTTTGTGTTCAGTTCGGTT 60.159 45.455 0.00 0.00 0.00 4.44
2320 5156 3.064271 GCAGTTTGTGTTCAGTTCGGTTA 59.936 43.478 0.00 0.00 0.00 2.85
2321 5157 4.437659 GCAGTTTGTGTTCAGTTCGGTTAA 60.438 41.667 0.00 0.00 0.00 2.01
2344 5180 3.454375 TCTCACTGTCAGGTTTTTCGAC 58.546 45.455 4.53 0.00 0.00 4.20
2363 5199 2.352960 GACGAAGGCCATCATTCACTTC 59.647 50.000 5.01 0.00 35.43 3.01
2426 5262 4.152607 CTGCTGAAGCCAGTAAAACTTC 57.847 45.455 0.00 0.00 42.35 3.01
2438 5274 4.520492 CAGTAAAACTTCACAATGCTCCCT 59.480 41.667 0.00 0.00 0.00 4.20
2465 5309 2.227388 GGCCTTGGAATGATATGCTTCG 59.773 50.000 0.00 0.00 0.00 3.79
2562 5406 6.431198 TTTGGCTCCGACTAATAACAAATC 57.569 37.500 0.00 0.00 0.00 2.17
2563 5407 4.116961 TGGCTCCGACTAATAACAAATCG 58.883 43.478 0.00 0.00 0.00 3.34
2571 5415 6.772078 CGACTAATAACAAATCGGAAAAGCT 58.228 36.000 0.00 0.00 0.00 3.74
2572 5416 7.902032 CGACTAATAACAAATCGGAAAAGCTA 58.098 34.615 0.00 0.00 0.00 3.32
2573 5417 8.548721 CGACTAATAACAAATCGGAAAAGCTAT 58.451 33.333 0.00 0.00 0.00 2.97
2586 5430 5.864628 GAAAAGCTATTTTCCAGTCGACT 57.135 39.130 13.58 13.58 45.70 4.18
2587 5431 5.613358 AAAAGCTATTTTCCAGTCGACTG 57.387 39.130 33.87 33.87 33.21 3.51
2588 5432 3.963428 AGCTATTTTCCAGTCGACTGT 57.037 42.857 36.37 23.60 42.27 3.55
2589 5433 5.401531 AAGCTATTTTCCAGTCGACTGTA 57.598 39.130 36.37 24.22 42.27 2.74
2590 5434 5.599999 AGCTATTTTCCAGTCGACTGTAT 57.400 39.130 36.37 25.97 42.27 2.29
2591 5435 5.978814 AGCTATTTTCCAGTCGACTGTATT 58.021 37.500 36.37 21.44 42.27 1.89
2592 5436 6.407202 AGCTATTTTCCAGTCGACTGTATTT 58.593 36.000 36.37 22.03 42.27 1.40
2593 5437 6.879458 AGCTATTTTCCAGTCGACTGTATTTT 59.121 34.615 36.37 22.92 42.27 1.82
2594 5438 8.038944 AGCTATTTTCCAGTCGACTGTATTTTA 58.961 33.333 36.37 22.83 42.27 1.52
2595 5439 8.328864 GCTATTTTCCAGTCGACTGTATTTTAG 58.671 37.037 36.37 28.98 42.27 1.85
2596 5440 9.367444 CTATTTTCCAGTCGACTGTATTTTAGT 57.633 33.333 36.37 19.81 42.27 2.24
2598 5442 9.715121 ATTTTCCAGTCGACTGTATTTTAGTAA 57.285 29.630 36.37 19.77 42.27 2.24
2599 5443 8.524870 TTTCCAGTCGACTGTATTTTAGTAAC 57.475 34.615 36.37 0.00 42.27 2.50
2600 5444 7.218228 TCCAGTCGACTGTATTTTAGTAACA 57.782 36.000 36.37 7.57 42.27 2.41
2601 5445 7.310664 TCCAGTCGACTGTATTTTAGTAACAG 58.689 38.462 36.37 19.80 44.89 3.16
2602 5446 7.175467 TCCAGTCGACTGTATTTTAGTAACAGA 59.825 37.037 36.37 21.47 42.59 3.41
2603 5447 7.272948 CCAGTCGACTGTATTTTAGTAACAGAC 59.727 40.741 36.37 1.94 42.59 3.51
2609 5453 9.224058 GACTGTATTTTAGTAACAGACGATCTC 57.776 37.037 8.57 0.00 42.59 2.75
2610 5454 8.737175 ACTGTATTTTAGTAACAGACGATCTCA 58.263 33.333 8.57 0.00 42.59 3.27
2611 5455 9.227490 CTGTATTTTAGTAACAGACGATCTCAG 57.773 37.037 0.00 0.00 42.59 3.35
2612 5456 8.953313 TGTATTTTAGTAACAGACGATCTCAGA 58.047 33.333 0.00 0.00 0.00 3.27
2613 5457 9.440784 GTATTTTAGTAACAGACGATCTCAGAG 57.559 37.037 0.00 0.00 0.00 3.35
2614 5458 5.487153 TTAGTAACAGACGATCTCAGAGC 57.513 43.478 0.00 0.00 0.00 4.09
2616 5460 0.453793 AACAGACGATCTCAGAGCGG 59.546 55.000 18.10 0.98 46.07 5.52
2617 5461 0.678366 ACAGACGATCTCAGAGCGGT 60.678 55.000 18.10 1.70 46.07 5.68
2618 5462 0.028770 CAGACGATCTCAGAGCGGTC 59.971 60.000 18.10 11.55 46.07 4.79
2619 5463 0.393132 AGACGATCTCAGAGCGGTCA 60.393 55.000 18.10 0.00 46.07 4.02
2620 5464 0.028770 GACGATCTCAGAGCGGTCAG 59.971 60.000 18.10 9.28 46.07 3.51
2621 5465 0.393132 ACGATCTCAGAGCGGTCAGA 60.393 55.000 18.10 13.58 46.07 3.27
2622 5466 0.950836 CGATCTCAGAGCGGTCAGAT 59.049 55.000 18.15 16.39 37.82 2.90
2623 5467 2.147150 CGATCTCAGAGCGGTCAGATA 58.853 52.381 18.15 7.48 37.82 1.98
2624 5468 2.746904 CGATCTCAGAGCGGTCAGATAT 59.253 50.000 18.15 12.21 37.82 1.63
2625 5469 3.190327 CGATCTCAGAGCGGTCAGATATT 59.810 47.826 18.15 2.02 37.82 1.28
2626 5470 3.998099 TCTCAGAGCGGTCAGATATTG 57.002 47.619 18.15 5.15 0.00 1.90
2627 5471 3.555966 TCTCAGAGCGGTCAGATATTGA 58.444 45.455 18.15 9.42 0.00 2.57
2628 5472 4.148079 TCTCAGAGCGGTCAGATATTGAT 58.852 43.478 18.15 0.00 38.29 2.57
2629 5473 4.217334 TCTCAGAGCGGTCAGATATTGATC 59.783 45.833 18.15 0.00 38.29 2.92
2635 5479 3.393089 GGTCAGATATTGATCGCACCT 57.607 47.619 0.00 0.00 38.29 4.00
2636 5480 3.321497 GGTCAGATATTGATCGCACCTC 58.679 50.000 0.00 0.00 38.29 3.85
2637 5481 3.321497 GTCAGATATTGATCGCACCTCC 58.679 50.000 0.00 0.00 38.29 4.30
2638 5482 2.300152 TCAGATATTGATCGCACCTCCC 59.700 50.000 0.00 0.00 37.15 4.30
2639 5483 1.273606 AGATATTGATCGCACCTCCCG 59.726 52.381 0.00 0.00 37.15 5.14
2640 5484 1.272490 GATATTGATCGCACCTCCCGA 59.728 52.381 0.00 0.00 39.24 5.14
2641 5485 0.673985 TATTGATCGCACCTCCCGAG 59.326 55.000 0.00 0.00 38.20 4.63
2642 5486 1.330655 ATTGATCGCACCTCCCGAGT 61.331 55.000 0.00 0.00 38.20 4.18
2643 5487 2.105128 GATCGCACCTCCCGAGTG 59.895 66.667 0.00 0.00 38.20 3.51
2644 5488 3.432051 GATCGCACCTCCCGAGTGG 62.432 68.421 0.00 0.00 38.20 4.00
2645 5489 3.957435 ATCGCACCTCCCGAGTGGA 62.957 63.158 0.00 0.00 42.41 4.02
2646 5490 3.461773 CGCACCTCCCGAGTGGAT 61.462 66.667 0.00 0.00 44.07 3.41
2647 5491 2.990479 GCACCTCCCGAGTGGATT 59.010 61.111 0.00 0.00 44.07 3.01
2648 5492 1.153349 GCACCTCCCGAGTGGATTC 60.153 63.158 0.00 0.00 44.07 2.52
2649 5493 1.522569 CACCTCCCGAGTGGATTCC 59.477 63.158 0.00 0.00 44.07 3.01
2650 5494 1.080354 ACCTCCCGAGTGGATTCCA 59.920 57.895 0.00 0.00 44.07 3.53
2651 5495 0.326618 ACCTCCCGAGTGGATTCCAT 60.327 55.000 9.01 0.00 44.07 3.41
2652 5496 0.394565 CCTCCCGAGTGGATTCCATC 59.605 60.000 9.01 6.83 44.07 3.51
2653 5497 0.032678 CTCCCGAGTGGATTCCATCG 59.967 60.000 21.02 21.02 44.07 3.84
2654 5498 0.686441 TCCCGAGTGGATTCCATCGT 60.686 55.000 23.63 9.64 38.61 3.73
2655 5499 0.249489 CCCGAGTGGATTCCATCGTC 60.249 60.000 23.63 14.99 35.28 4.20
2656 5500 0.459899 CCGAGTGGATTCCATCGTCA 59.540 55.000 23.63 0.00 35.28 4.35
2657 5501 1.536922 CCGAGTGGATTCCATCGTCAG 60.537 57.143 23.63 12.88 35.28 3.51
2658 5502 1.536922 CGAGTGGATTCCATCGTCAGG 60.537 57.143 20.27 2.59 35.28 3.86
2659 5503 0.833287 AGTGGATTCCATCGTCAGGG 59.167 55.000 9.01 0.00 35.28 4.45
2660 5504 0.830648 GTGGATTCCATCGTCAGGGA 59.169 55.000 9.01 0.00 35.28 4.20
2661 5505 1.209504 GTGGATTCCATCGTCAGGGAA 59.790 52.381 9.01 0.00 46.48 3.97
2662 5506 1.209504 TGGATTCCATCGTCAGGGAAC 59.790 52.381 0.00 0.00 45.35 3.62
2663 5507 1.209504 GGATTCCATCGTCAGGGAACA 59.790 52.381 0.00 0.00 45.35 3.18
2664 5508 2.555199 GATTCCATCGTCAGGGAACAG 58.445 52.381 0.00 0.00 45.35 3.16
2665 5509 1.639722 TTCCATCGTCAGGGAACAGA 58.360 50.000 0.00 0.00 38.23 3.41
2666 5510 1.639722 TCCATCGTCAGGGAACAGAA 58.360 50.000 0.00 0.00 0.00 3.02
2667 5511 1.275291 TCCATCGTCAGGGAACAGAAC 59.725 52.381 0.00 0.00 0.00 3.01
2668 5512 1.001974 CCATCGTCAGGGAACAGAACA 59.998 52.381 0.00 0.00 0.00 3.18
2669 5513 2.069273 CATCGTCAGGGAACAGAACAC 58.931 52.381 0.00 0.00 0.00 3.32
2670 5514 1.116308 TCGTCAGGGAACAGAACACA 58.884 50.000 0.00 0.00 0.00 3.72
2671 5515 1.691976 TCGTCAGGGAACAGAACACAT 59.308 47.619 0.00 0.00 0.00 3.21
2672 5516 2.069273 CGTCAGGGAACAGAACACATC 58.931 52.381 0.00 0.00 0.00 3.06
2673 5517 2.289072 CGTCAGGGAACAGAACACATCT 60.289 50.000 0.00 0.00 39.68 2.90
2674 5518 3.330267 GTCAGGGAACAGAACACATCTC 58.670 50.000 0.00 0.00 35.73 2.75
2675 5519 2.303022 TCAGGGAACAGAACACATCTCC 59.697 50.000 0.00 0.00 35.73 3.71
2676 5520 2.304180 CAGGGAACAGAACACATCTCCT 59.696 50.000 0.00 0.00 35.73 3.69
2677 5521 2.569404 AGGGAACAGAACACATCTCCTC 59.431 50.000 0.00 0.00 35.73 3.71
2678 5522 2.611518 GGAACAGAACACATCTCCTCG 58.388 52.381 0.00 0.00 35.73 4.63
2679 5523 2.028930 GGAACAGAACACATCTCCTCGT 60.029 50.000 0.00 0.00 35.73 4.18
2680 5524 3.555168 GGAACAGAACACATCTCCTCGTT 60.555 47.826 0.00 0.00 35.73 3.85
2681 5525 3.305398 ACAGAACACATCTCCTCGTTC 57.695 47.619 0.00 0.00 35.73 3.95
2682 5526 2.254459 CAGAACACATCTCCTCGTTCG 58.746 52.381 0.00 0.00 42.01 3.95
2683 5527 0.992802 GAACACATCTCCTCGTTCGC 59.007 55.000 0.00 0.00 0.00 4.70
2684 5528 0.317160 AACACATCTCCTCGTTCGCA 59.683 50.000 0.00 0.00 0.00 5.10
2685 5529 0.317160 ACACATCTCCTCGTTCGCAA 59.683 50.000 0.00 0.00 0.00 4.85
2686 5530 1.270094 ACACATCTCCTCGTTCGCAAA 60.270 47.619 0.00 0.00 0.00 3.68
2687 5531 1.798223 CACATCTCCTCGTTCGCAAAA 59.202 47.619 0.00 0.00 0.00 2.44
2688 5532 2.223144 CACATCTCCTCGTTCGCAAAAA 59.777 45.455 0.00 0.00 0.00 1.94
2689 5533 3.074412 ACATCTCCTCGTTCGCAAAAAT 58.926 40.909 0.00 0.00 0.00 1.82
2690 5534 4.092821 CACATCTCCTCGTTCGCAAAAATA 59.907 41.667 0.00 0.00 0.00 1.40
2691 5535 4.693566 ACATCTCCTCGTTCGCAAAAATAA 59.306 37.500 0.00 0.00 0.00 1.40
2692 5536 5.180492 ACATCTCCTCGTTCGCAAAAATAAA 59.820 36.000 0.00 0.00 0.00 1.40
2693 5537 5.873179 TCTCCTCGTTCGCAAAAATAAAT 57.127 34.783 0.00 0.00 0.00 1.40
2694 5538 5.627172 TCTCCTCGTTCGCAAAAATAAATG 58.373 37.500 0.00 0.00 0.00 2.32
2695 5539 4.162812 TCCTCGTTCGCAAAAATAAATGC 58.837 39.130 0.00 0.00 39.17 3.56
2696 5540 3.303229 CCTCGTTCGCAAAAATAAATGCC 59.697 43.478 0.00 0.00 39.39 4.40
2697 5541 3.246619 TCGTTCGCAAAAATAAATGCCC 58.753 40.909 0.00 0.00 39.39 5.36
2698 5542 2.347150 CGTTCGCAAAAATAAATGCCCC 59.653 45.455 0.00 0.00 39.39 5.80
2699 5543 2.675844 GTTCGCAAAAATAAATGCCCCC 59.324 45.455 0.00 0.00 39.39 5.40
2716 5560 2.335933 CCCCCATAGGATTCTAACCGT 58.664 52.381 0.00 0.00 38.24 4.83
2717 5561 2.038557 CCCCCATAGGATTCTAACCGTG 59.961 54.545 0.00 0.00 38.24 4.94
2718 5562 2.038557 CCCCATAGGATTCTAACCGTGG 59.961 54.545 0.00 0.00 38.24 4.94
2719 5563 2.704065 CCCATAGGATTCTAACCGTGGT 59.296 50.000 0.00 0.00 36.81 4.16
2720 5564 3.244112 CCCATAGGATTCTAACCGTGGTC 60.244 52.174 0.00 0.00 36.81 4.02
2721 5565 3.552273 CCATAGGATTCTAACCGTGGTCG 60.552 52.174 0.00 0.00 35.20 4.79
2722 5566 0.175073 AGGATTCTAACCGTGGTCGC 59.825 55.000 0.00 0.00 35.54 5.19
2723 5567 0.175073 GGATTCTAACCGTGGTCGCT 59.825 55.000 0.00 0.00 35.54 4.93
2724 5568 1.405121 GGATTCTAACCGTGGTCGCTT 60.405 52.381 0.00 0.00 35.54 4.68
2725 5569 1.925185 GATTCTAACCGTGGTCGCTTC 59.075 52.381 0.00 0.00 35.54 3.86
2726 5570 0.675083 TTCTAACCGTGGTCGCTTCA 59.325 50.000 0.00 0.00 35.54 3.02
2727 5571 0.038892 TCTAACCGTGGTCGCTTCAC 60.039 55.000 0.00 0.00 35.54 3.18
2732 5576 2.029964 GTGGTCGCTTCACGGGAA 59.970 61.111 0.00 0.00 43.89 3.97
2733 5577 2.029964 TGGTCGCTTCACGGGAAC 59.970 61.111 0.00 0.00 43.89 3.62
2734 5578 2.029964 GGTCGCTTCACGGGAACA 59.970 61.111 0.00 0.00 41.60 3.18
2735 5579 2.315386 GGTCGCTTCACGGGAACAC 61.315 63.158 0.00 0.00 41.60 3.32
2736 5580 2.355363 TCGCTTCACGGGAACACG 60.355 61.111 10.98 10.98 43.89 4.49
2737 5581 2.355363 CGCTTCACGGGAACACGA 60.355 61.111 11.65 0.00 38.44 4.35
2738 5582 2.372690 CGCTTCACGGGAACACGAG 61.373 63.158 11.65 0.00 38.44 4.18
2739 5583 2.027625 GCTTCACGGGAACACGAGG 61.028 63.158 0.00 0.00 37.61 4.63
2740 5584 1.366366 CTTCACGGGAACACGAGGT 59.634 57.895 0.00 0.00 37.61 3.85
2741 5585 0.666577 CTTCACGGGAACACGAGGTC 60.667 60.000 0.00 0.00 37.61 3.85
2742 5586 1.393487 TTCACGGGAACACGAGGTCA 61.393 55.000 0.00 0.00 37.61 4.02
2743 5587 1.068417 CACGGGAACACGAGGTCAA 59.932 57.895 2.83 0.00 37.61 3.18
2744 5588 0.320421 CACGGGAACACGAGGTCAAT 60.320 55.000 2.83 0.00 37.61 2.57
2745 5589 1.067425 CACGGGAACACGAGGTCAATA 60.067 52.381 2.83 0.00 37.61 1.90
2746 5590 1.619827 ACGGGAACACGAGGTCAATAA 59.380 47.619 2.83 0.00 37.61 1.40
2747 5591 1.997606 CGGGAACACGAGGTCAATAAC 59.002 52.381 0.00 0.00 35.47 1.89
2748 5592 5.727421 ACGGGAACACGAGGTCAATAACC 62.727 52.174 2.83 0.00 42.09 2.85
2758 5602 2.296073 GTCAATAACCACCCCACCAA 57.704 50.000 0.00 0.00 0.00 3.67
2759 5603 1.890489 GTCAATAACCACCCCACCAAC 59.110 52.381 0.00 0.00 0.00 3.77
2760 5604 0.885196 CAATAACCACCCCACCAACG 59.115 55.000 0.00 0.00 0.00 4.10
2761 5605 0.772384 AATAACCACCCCACCAACGA 59.228 50.000 0.00 0.00 0.00 3.85
2762 5606 0.996583 ATAACCACCCCACCAACGAT 59.003 50.000 0.00 0.00 0.00 3.73
2763 5607 0.325602 TAACCACCCCACCAACGATC 59.674 55.000 0.00 0.00 0.00 3.69
2764 5608 2.045340 CCACCCCACCAACGATCC 60.045 66.667 0.00 0.00 0.00 3.36
2765 5609 2.435938 CACCCCACCAACGATCCG 60.436 66.667 0.00 0.00 0.00 4.18
2766 5610 2.926242 ACCCCACCAACGATCCGT 60.926 61.111 0.00 0.00 43.97 4.69
2779 5623 4.625972 ACGATCCGTTTGTGTTTCTTTT 57.374 36.364 0.00 0.00 36.35 2.27
2780 5624 5.738118 ACGATCCGTTTGTGTTTCTTTTA 57.262 34.783 0.00 0.00 36.35 1.52
2781 5625 6.121613 ACGATCCGTTTGTGTTTCTTTTAA 57.878 33.333 0.00 0.00 36.35 1.52
2782 5626 6.196571 ACGATCCGTTTGTGTTTCTTTTAAG 58.803 36.000 0.00 0.00 36.35 1.85
2783 5627 5.115021 CGATCCGTTTGTGTTTCTTTTAAGC 59.885 40.000 0.00 0.00 0.00 3.09
2784 5628 4.674475 TCCGTTTGTGTTTCTTTTAAGCC 58.326 39.130 0.00 0.00 0.00 4.35
2785 5629 4.158025 TCCGTTTGTGTTTCTTTTAAGCCA 59.842 37.500 0.00 0.00 0.00 4.75
2786 5630 4.865365 CCGTTTGTGTTTCTTTTAAGCCAA 59.135 37.500 0.00 0.00 0.00 4.52
2787 5631 5.005299 CCGTTTGTGTTTCTTTTAAGCCAAG 59.995 40.000 0.00 0.00 0.00 3.61
2788 5632 5.575218 CGTTTGTGTTTCTTTTAAGCCAAGT 59.425 36.000 0.00 0.00 0.00 3.16
2789 5633 6.748198 CGTTTGTGTTTCTTTTAAGCCAAGTA 59.252 34.615 0.00 0.00 0.00 2.24
2790 5634 7.253519 CGTTTGTGTTTCTTTTAAGCCAAGTAC 60.254 37.037 0.00 0.00 0.00 2.73
2791 5635 7.399245 TTGTGTTTCTTTTAAGCCAAGTACT 57.601 32.000 0.00 0.00 0.00 2.73
2792 5636 7.399245 TGTGTTTCTTTTAAGCCAAGTACTT 57.601 32.000 1.12 1.12 0.00 2.24
2793 5637 7.832769 TGTGTTTCTTTTAAGCCAAGTACTTT 58.167 30.769 5.07 0.00 0.00 2.66
2794 5638 8.958506 TGTGTTTCTTTTAAGCCAAGTACTTTA 58.041 29.630 5.07 0.00 0.00 1.85
2795 5639 9.961265 GTGTTTCTTTTAAGCCAAGTACTTTAT 57.039 29.630 5.07 0.00 0.00 1.40
2796 5640 9.959749 TGTTTCTTTTAAGCCAAGTACTTTATG 57.040 29.630 5.07 0.00 0.00 1.90
2797 5641 9.961265 GTTTCTTTTAAGCCAAGTACTTTATGT 57.039 29.630 5.07 0.00 0.00 2.29
2798 5642 9.959749 TTTCTTTTAAGCCAAGTACTTTATGTG 57.040 29.630 5.07 0.00 0.00 3.21
2799 5643 8.911918 TCTTTTAAGCCAAGTACTTTATGTGA 57.088 30.769 5.07 0.00 0.00 3.58
2800 5644 8.780249 TCTTTTAAGCCAAGTACTTTATGTGAC 58.220 33.333 5.07 0.00 0.00 3.67
2801 5645 7.443259 TTTAAGCCAAGTACTTTATGTGACC 57.557 36.000 5.07 0.00 0.00 4.02
2802 5646 4.910458 AGCCAAGTACTTTATGTGACCT 57.090 40.909 5.07 0.00 0.00 3.85
2803 5647 5.242795 AGCCAAGTACTTTATGTGACCTT 57.757 39.130 5.07 0.00 0.00 3.50
2804 5648 5.631119 AGCCAAGTACTTTATGTGACCTTT 58.369 37.500 5.07 0.00 0.00 3.11
2805 5649 6.068670 AGCCAAGTACTTTATGTGACCTTTT 58.931 36.000 5.07 0.00 0.00 2.27
2806 5650 6.016276 AGCCAAGTACTTTATGTGACCTTTTG 60.016 38.462 5.07 0.00 0.00 2.44
2807 5651 6.238925 GCCAAGTACTTTATGTGACCTTTTGT 60.239 38.462 5.07 0.00 0.00 2.83
2808 5652 7.360361 CCAAGTACTTTATGTGACCTTTTGTC 58.640 38.462 5.07 0.00 44.72 3.18
2821 5665 5.464965 ACCTTTTGTCGATACTAAATGCG 57.535 39.130 0.00 0.00 31.45 4.73
2822 5666 5.172934 ACCTTTTGTCGATACTAAATGCGA 58.827 37.500 0.00 0.00 31.45 5.10
2823 5667 5.291128 ACCTTTTGTCGATACTAAATGCGAG 59.709 40.000 0.00 0.00 31.45 5.03
2824 5668 5.291128 CCTTTTGTCGATACTAAATGCGAGT 59.709 40.000 0.00 0.00 31.45 4.18
2825 5669 5.696260 TTTGTCGATACTAAATGCGAGTG 57.304 39.130 0.00 0.00 33.00 3.51
2826 5670 4.625972 TGTCGATACTAAATGCGAGTGA 57.374 40.909 0.00 0.00 33.00 3.41
2827 5671 4.989044 TGTCGATACTAAATGCGAGTGAA 58.011 39.130 0.00 0.00 33.00 3.18
2828 5672 5.404096 TGTCGATACTAAATGCGAGTGAAA 58.596 37.500 0.00 0.00 33.00 2.69
2829 5673 5.865013 TGTCGATACTAAATGCGAGTGAAAA 59.135 36.000 0.00 0.00 33.00 2.29
2830 5674 6.366604 TGTCGATACTAAATGCGAGTGAAAAA 59.633 34.615 0.00 0.00 33.00 1.94
2831 5675 6.895040 GTCGATACTAAATGCGAGTGAAAAAG 59.105 38.462 0.00 0.00 33.00 2.27
2832 5676 6.809689 TCGATACTAAATGCGAGTGAAAAAGA 59.190 34.615 0.00 0.00 0.00 2.52
2833 5677 7.329962 TCGATACTAAATGCGAGTGAAAAAGAA 59.670 33.333 0.00 0.00 0.00 2.52
2834 5678 7.955324 CGATACTAAATGCGAGTGAAAAAGAAA 59.045 33.333 0.00 0.00 0.00 2.52
2835 5679 9.607285 GATACTAAATGCGAGTGAAAAAGAAAA 57.393 29.630 0.00 0.00 0.00 2.29
2836 5680 7.914537 ACTAAATGCGAGTGAAAAAGAAAAG 57.085 32.000 0.00 0.00 0.00 2.27
2837 5681 6.918022 ACTAAATGCGAGTGAAAAAGAAAAGG 59.082 34.615 0.00 0.00 0.00 3.11
2838 5682 3.708563 TGCGAGTGAAAAAGAAAAGGG 57.291 42.857 0.00 0.00 0.00 3.95
2839 5683 3.283751 TGCGAGTGAAAAAGAAAAGGGA 58.716 40.909 0.00 0.00 0.00 4.20
2840 5684 3.697045 TGCGAGTGAAAAAGAAAAGGGAA 59.303 39.130 0.00 0.00 0.00 3.97
2841 5685 4.158764 TGCGAGTGAAAAAGAAAAGGGAAA 59.841 37.500 0.00 0.00 0.00 3.13
2842 5686 5.106442 GCGAGTGAAAAAGAAAAGGGAAAA 58.894 37.500 0.00 0.00 0.00 2.29
2843 5687 5.579119 GCGAGTGAAAAAGAAAAGGGAAAAA 59.421 36.000 0.00 0.00 0.00 1.94
2860 5704 3.575965 AAAAACAGCTAGCGGGATTTG 57.424 42.857 19.27 8.73 0.00 2.32
2861 5705 2.489938 AAACAGCTAGCGGGATTTGA 57.510 45.000 19.27 0.00 0.00 2.69
2862 5706 2.029838 AACAGCTAGCGGGATTTGAG 57.970 50.000 19.27 0.57 0.00 3.02
2863 5707 0.462759 ACAGCTAGCGGGATTTGAGC 60.463 55.000 19.27 0.00 0.00 4.26
2864 5708 1.147153 AGCTAGCGGGATTTGAGCC 59.853 57.895 9.55 0.00 33.50 4.70
2865 5709 1.147153 GCTAGCGGGATTTGAGCCT 59.853 57.895 0.00 0.00 0.00 4.58
2866 5710 0.393077 GCTAGCGGGATTTGAGCCTA 59.607 55.000 0.00 0.00 0.00 3.93
2867 5711 1.874320 GCTAGCGGGATTTGAGCCTAC 60.874 57.143 0.00 0.00 0.00 3.18
2868 5712 1.689273 CTAGCGGGATTTGAGCCTACT 59.311 52.381 0.00 0.00 0.00 2.57
2869 5713 1.789523 AGCGGGATTTGAGCCTACTA 58.210 50.000 0.00 0.00 0.00 1.82
2870 5714 1.689273 AGCGGGATTTGAGCCTACTAG 59.311 52.381 0.00 0.00 0.00 2.57
2871 5715 1.687123 GCGGGATTTGAGCCTACTAGA 59.313 52.381 0.00 0.00 0.00 2.43
2872 5716 2.300437 GCGGGATTTGAGCCTACTAGAT 59.700 50.000 0.00 0.00 0.00 1.98
2873 5717 3.862642 GCGGGATTTGAGCCTACTAGATG 60.863 52.174 0.00 0.00 0.00 2.90
2874 5718 3.574396 CGGGATTTGAGCCTACTAGATGA 59.426 47.826 0.00 0.00 0.00 2.92
2875 5719 4.559704 CGGGATTTGAGCCTACTAGATGAC 60.560 50.000 0.00 0.00 0.00 3.06
2876 5720 4.551388 GGATTTGAGCCTACTAGATGACG 58.449 47.826 0.00 0.00 0.00 4.35
2877 5721 4.038162 GGATTTGAGCCTACTAGATGACGT 59.962 45.833 0.00 0.00 0.00 4.34
2878 5722 5.452077 GGATTTGAGCCTACTAGATGACGTT 60.452 44.000 0.00 0.00 0.00 3.99
2879 5723 4.634184 TTGAGCCTACTAGATGACGTTC 57.366 45.455 0.00 0.00 0.00 3.95
2880 5724 2.950309 TGAGCCTACTAGATGACGTTCC 59.050 50.000 0.00 0.00 0.00 3.62
2881 5725 2.950309 GAGCCTACTAGATGACGTTCCA 59.050 50.000 0.00 0.00 0.00 3.53
2882 5726 3.567397 AGCCTACTAGATGACGTTCCAT 58.433 45.455 0.00 0.00 0.00 3.41
2883 5727 3.319405 AGCCTACTAGATGACGTTCCATG 59.681 47.826 0.00 0.00 0.00 3.66
2884 5728 3.318275 GCCTACTAGATGACGTTCCATGA 59.682 47.826 0.00 0.00 0.00 3.07
2885 5729 4.021894 GCCTACTAGATGACGTTCCATGAT 60.022 45.833 0.00 0.00 0.00 2.45
2886 5730 5.704888 CCTACTAGATGACGTTCCATGATC 58.295 45.833 0.00 0.00 0.00 2.92
2887 5731 5.241728 CCTACTAGATGACGTTCCATGATCA 59.758 44.000 0.00 0.00 0.00 2.92
2888 5732 4.938080 ACTAGATGACGTTCCATGATCAC 58.062 43.478 0.00 0.00 0.00 3.06
2889 5733 2.814269 AGATGACGTTCCATGATCACG 58.186 47.619 0.00 0.00 39.86 4.35
2890 5734 2.427095 AGATGACGTTCCATGATCACGA 59.573 45.455 15.43 0.20 37.37 4.35
2891 5735 2.959507 TGACGTTCCATGATCACGAT 57.040 45.000 15.43 3.37 37.37 3.73
2892 5736 2.809446 TGACGTTCCATGATCACGATC 58.191 47.619 15.43 0.00 37.37 3.69
2903 5747 4.718940 TGATCACGATCAGCTTGACTAA 57.281 40.909 5.62 0.00 42.42 2.24
2904 5748 5.072040 TGATCACGATCAGCTTGACTAAA 57.928 39.130 5.62 0.00 42.42 1.85
2905 5749 5.664457 TGATCACGATCAGCTTGACTAAAT 58.336 37.500 5.62 0.00 42.42 1.40
2906 5750 6.805713 TGATCACGATCAGCTTGACTAAATA 58.194 36.000 5.62 0.00 42.42 1.40
2907 5751 6.920210 TGATCACGATCAGCTTGACTAAATAG 59.080 38.462 5.62 0.00 42.42 1.73
2908 5752 6.451064 TCACGATCAGCTTGACTAAATAGA 57.549 37.500 0.00 0.00 0.00 1.98
2909 5753 6.499172 TCACGATCAGCTTGACTAAATAGAG 58.501 40.000 0.00 0.00 0.00 2.43
2910 5754 6.095580 TCACGATCAGCTTGACTAAATAGAGT 59.904 38.462 0.00 0.00 0.00 3.24
2911 5755 7.282450 TCACGATCAGCTTGACTAAATAGAGTA 59.718 37.037 0.00 0.00 0.00 2.59
2912 5756 7.377397 CACGATCAGCTTGACTAAATAGAGTAC 59.623 40.741 0.00 0.00 0.00 2.73
2913 5757 7.283580 ACGATCAGCTTGACTAAATAGAGTACT 59.716 37.037 0.00 0.00 0.00 2.73
2914 5758 8.132362 CGATCAGCTTGACTAAATAGAGTACTT 58.868 37.037 0.00 0.00 0.00 2.24
2915 5759 9.810545 GATCAGCTTGACTAAATAGAGTACTTT 57.189 33.333 0.00 0.00 0.00 2.66
2917 5761 9.998106 TCAGCTTGACTAAATAGAGTACTTTTT 57.002 29.630 0.00 0.96 33.38 1.94
2919 5763 9.780186 AGCTTGACTAAATAGAGTACTTTTTGT 57.220 29.630 0.00 1.04 31.78 2.83
2971 5815 7.418337 AAAAACACATCAACCTAGGTTTTCT 57.582 32.000 24.99 9.33 37.44 2.52
2972 5816 8.528044 AAAAACACATCAACCTAGGTTTTCTA 57.472 30.769 24.99 10.90 37.44 2.10
2973 5817 8.706322 AAAACACATCAACCTAGGTTTTCTAT 57.294 30.769 24.99 12.64 34.44 1.98
2974 5818 8.706322 AAACACATCAACCTAGGTTTTCTATT 57.294 30.769 24.99 11.87 36.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.810030 GCCGTGTCTTCGATGGGTC 60.810 63.158 0.00 0.00 0.00 4.46
4 5 2.227089 GAGCCGTGTCTTCGATGGGT 62.227 60.000 0.00 0.00 0.00 4.51
6 7 1.519455 GGAGCCGTGTCTTCGATGG 60.519 63.158 0.00 0.00 0.00 3.51
7 8 1.078759 GTGGAGCCGTGTCTTCGATG 61.079 60.000 0.00 0.00 0.00 3.84
8 9 1.215647 GTGGAGCCGTGTCTTCGAT 59.784 57.895 0.00 0.00 0.00 3.59
10 11 1.734477 CTGTGGAGCCGTGTCTTCG 60.734 63.158 0.00 0.00 0.00 3.79
12 13 2.100879 GACCTGTGGAGCCGTGTCTT 62.101 60.000 0.00 0.00 0.00 3.01
18 19 3.775654 GGAGGACCTGTGGAGCCG 61.776 72.222 0.00 0.00 0.00 5.52
21 22 3.775654 GGCGGAGGACCTGTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
50 51 1.651240 CTGCTCATTTGGAGGTGGCG 61.651 60.000 0.00 0.00 44.22 5.69
51 52 1.318158 CCTGCTCATTTGGAGGTGGC 61.318 60.000 0.00 0.00 44.22 5.01
53 54 0.329261 TCCCTGCTCATTTGGAGGTG 59.671 55.000 0.00 0.00 42.97 4.00
54 55 1.302907 ATCCCTGCTCATTTGGAGGT 58.697 50.000 0.00 0.00 42.97 3.85
59 60 3.244353 ACTCGGATATCCCTGCTCATTTG 60.244 47.826 16.36 0.00 0.00 2.32
66 67 1.819903 GGTCTACTCGGATATCCCTGC 59.180 57.143 16.36 0.15 0.00 4.85
69 70 6.380274 TGAATAATGGTCTACTCGGATATCCC 59.620 42.308 16.36 0.00 0.00 3.85
75 76 6.776116 AGTGTATGAATAATGGTCTACTCGGA 59.224 38.462 0.00 0.00 0.00 4.55
76 77 6.982852 AGTGTATGAATAATGGTCTACTCGG 58.017 40.000 0.00 0.00 0.00 4.63
81 82 5.279306 GCCCGAGTGTATGAATAATGGTCTA 60.279 44.000 0.00 0.00 0.00 2.59
85 86 3.738982 TGCCCGAGTGTATGAATAATGG 58.261 45.455 0.00 0.00 0.00 3.16
94 95 0.321298 GTGGTGTTGCCCGAGTGTAT 60.321 55.000 0.00 0.00 36.04 2.29
99 100 2.978010 GTGGTGGTGTTGCCCGAG 60.978 66.667 0.00 0.00 36.04 4.63
102 103 3.284449 GACGTGGTGGTGTTGCCC 61.284 66.667 0.00 0.00 36.04 5.36
117 118 4.980805 TTGGTGTGGAGCGGCGAC 62.981 66.667 12.98 3.05 0.00 5.19
120 121 1.800681 GTATTTGGTGTGGAGCGGC 59.199 57.895 0.00 0.00 0.00 6.53
121 122 0.390603 TCGTATTTGGTGTGGAGCGG 60.391 55.000 0.00 0.00 0.00 5.52
125 126 3.816523 GGAGTTTTCGTATTTGGTGTGGA 59.183 43.478 0.00 0.00 0.00 4.02
126 127 3.057806 GGGAGTTTTCGTATTTGGTGTGG 60.058 47.826 0.00 0.00 0.00 4.17
131 132 7.443259 TTCTTTAGGGAGTTTTCGTATTTGG 57.557 36.000 0.00 0.00 0.00 3.28
160 161 1.271934 CGGCATGGGTGTTTTGATTCA 59.728 47.619 0.00 0.00 0.00 2.57
164 165 0.250945 TAGCGGCATGGGTGTTTTGA 60.251 50.000 1.45 0.00 0.00 2.69
169 170 1.055849 TCATATAGCGGCATGGGTGT 58.944 50.000 1.45 0.00 0.00 4.16
178 179 2.747446 CCCGGGATTTTTCATATAGCGG 59.253 50.000 18.48 0.00 0.00 5.52
179 180 2.161609 GCCCGGGATTTTTCATATAGCG 59.838 50.000 29.31 0.00 0.00 4.26
180 181 3.191371 CAGCCCGGGATTTTTCATATAGC 59.809 47.826 29.31 2.42 0.00 2.97
181 182 4.651778 TCAGCCCGGGATTTTTCATATAG 58.348 43.478 29.31 0.78 0.00 1.31
183 184 3.593442 TCAGCCCGGGATTTTTCATAT 57.407 42.857 29.31 0.00 0.00 1.78
189 190 0.625849 AGACATCAGCCCGGGATTTT 59.374 50.000 29.31 3.97 0.00 1.82
190 191 1.417890 CTAGACATCAGCCCGGGATTT 59.582 52.381 29.31 4.45 0.00 2.17
194 195 2.093537 GAGCTAGACATCAGCCCGGG 62.094 65.000 19.09 19.09 39.99 5.73
196 197 0.249238 GTGAGCTAGACATCAGCCCG 60.249 60.000 0.00 0.00 39.99 6.13
216 217 2.045926 GCATGGTTCTGGACGGCT 60.046 61.111 0.00 0.00 0.00 5.52
218 219 3.578456 GTGCATGGTTCTGGACGG 58.422 61.111 0.00 0.00 0.00 4.79
223 224 1.732259 GGTAGTTCGTGCATGGTTCTG 59.268 52.381 5.98 0.00 0.00 3.02
228 229 2.093973 AGAAGAGGTAGTTCGTGCATGG 60.094 50.000 5.98 0.00 0.00 3.66
236 237 8.691797 ACTAGATCATTGAAGAAGAGGTAGTTC 58.308 37.037 0.00 0.00 0.00 3.01
237 238 8.602472 ACTAGATCATTGAAGAAGAGGTAGTT 57.398 34.615 0.00 0.00 0.00 2.24
239 240 8.231692 TGACTAGATCATTGAAGAAGAGGTAG 57.768 38.462 0.00 0.00 29.99 3.18
240 241 7.286546 CCTGACTAGATCATTGAAGAAGAGGTA 59.713 40.741 0.00 0.00 36.48 3.08
248 249 4.100653 TCTGGCCTGACTAGATCATTGAAG 59.899 45.833 8.48 0.00 36.48 3.02
251 252 3.494048 GGTCTGGCCTGACTAGATCATTG 60.494 52.174 33.57 0.00 38.28 2.82
252 253 2.703007 GGTCTGGCCTGACTAGATCATT 59.297 50.000 33.57 0.00 38.28 2.57
262 263 1.133181 TCATTGGTGGTCTGGCCTGA 61.133 55.000 8.48 8.48 38.35 3.86
268 269 2.283298 CCGATCTTCATTGGTGGTCTG 58.717 52.381 0.00 0.00 0.00 3.51
271 272 0.744414 CGCCGATCTTCATTGGTGGT 60.744 55.000 0.00 0.00 39.63 4.16
305 306 3.723348 GTGAAGTCAACGGCGGCC 61.723 66.667 13.24 9.54 0.00 6.13
308 309 1.278637 GTTGGTGAAGTCAACGGCG 59.721 57.895 4.80 4.80 36.03 6.46
312 313 0.586802 GAGGCGTTGGTGAAGTCAAC 59.413 55.000 0.00 0.00 40.57 3.18
314 315 0.179234 TTGAGGCGTTGGTGAAGTCA 59.821 50.000 0.00 0.00 0.00 3.41
325 326 1.709147 GCGATGCTCAATTGAGGCGT 61.709 55.000 31.41 24.40 42.29 5.68
332 333 0.676466 TCAACGGGCGATGCTCAATT 60.676 50.000 0.00 0.00 0.00 2.32
335 336 1.298157 CTTTCAACGGGCGATGCTCA 61.298 55.000 0.00 0.00 0.00 4.26
346 347 2.556287 GAGTGGCGGCTTTCAACG 59.444 61.111 11.43 0.00 0.00 4.10
348 349 1.667830 CTCGAGTGGCGGCTTTCAA 60.668 57.895 11.43 0.00 41.33 2.69
349 350 2.048222 CTCGAGTGGCGGCTTTCA 60.048 61.111 11.43 0.00 41.33 2.69
350 351 3.491652 GCTCGAGTGGCGGCTTTC 61.492 66.667 15.13 6.88 41.33 2.62
353 354 3.147595 TATGCTCGAGTGGCGGCT 61.148 61.111 15.13 0.00 41.33 5.52
354 355 2.962253 GTATGCTCGAGTGGCGGC 60.962 66.667 15.13 0.00 41.33 6.53
364 365 2.703007 ACAGGGAAGGAGATGTATGCTC 59.297 50.000 0.00 0.00 0.00 4.26
380 381 2.352805 GTGCTGGAAGGGACAGGG 59.647 66.667 0.00 0.00 36.48 4.45
381 382 2.190488 GAGGTGCTGGAAGGGACAGG 62.190 65.000 0.00 0.00 36.48 4.00
382 383 1.298014 GAGGTGCTGGAAGGGACAG 59.702 63.158 0.00 0.00 38.95 3.51
389 390 3.706373 GCCGAGGAGGTGCTGGAA 61.706 66.667 0.00 0.00 43.70 3.53
391 392 4.767255 GTGCCGAGGAGGTGCTGG 62.767 72.222 0.00 0.00 43.70 4.85
392 393 4.767255 GGTGCCGAGGAGGTGCTG 62.767 72.222 0.00 0.00 43.70 4.41
413 425 1.158007 GGTCATATTGGGTGGGGGAT 58.842 55.000 0.00 0.00 0.00 3.85
419 431 0.478507 GGGGGAGGTCATATTGGGTG 59.521 60.000 0.00 0.00 0.00 4.61
420 432 1.060163 CGGGGGAGGTCATATTGGGT 61.060 60.000 0.00 0.00 0.00 4.51
428 440 3.072468 CGTTAGCGGGGGAGGTCA 61.072 66.667 0.00 0.00 0.00 4.02
438 450 1.453379 TCTCCCCCTCTCGTTAGCG 60.453 63.158 0.00 0.00 39.92 4.26
439 451 1.726533 CGTCTCCCCCTCTCGTTAGC 61.727 65.000 0.00 0.00 0.00 3.09
440 452 0.394080 ACGTCTCCCCCTCTCGTTAG 60.394 60.000 0.00 0.00 0.00 2.34
441 453 0.393537 GACGTCTCCCCCTCTCGTTA 60.394 60.000 8.70 0.00 34.93 3.18
442 454 1.678300 GACGTCTCCCCCTCTCGTT 60.678 63.158 8.70 0.00 34.93 3.85
443 455 2.045143 GACGTCTCCCCCTCTCGT 60.045 66.667 8.70 0.00 37.45 4.18
444 456 3.203412 CGACGTCTCCCCCTCTCG 61.203 72.222 14.70 0.00 0.00 4.04
445 457 2.829458 CCGACGTCTCCCCCTCTC 60.829 72.222 14.70 0.00 0.00 3.20
470 482 2.653702 CGGCGCCAAAAATCCCAA 59.346 55.556 28.98 0.00 0.00 4.12
472 484 4.812476 GCCGGCGCCAAAAATCCC 62.812 66.667 28.98 0.35 0.00 3.85
488 500 1.337118 CAGAGAGATAGGGTCCTGGC 58.663 60.000 0.00 0.00 0.00 4.85
492 504 2.717515 TCCTACCAGAGAGATAGGGTCC 59.282 54.545 0.00 0.00 36.82 4.46
495 507 3.161866 GCTTCCTACCAGAGAGATAGGG 58.838 54.545 0.00 0.00 36.82 3.53
498 510 3.579534 ACGCTTCCTACCAGAGAGATA 57.420 47.619 0.00 0.00 0.00 1.98
499 511 2.445682 ACGCTTCCTACCAGAGAGAT 57.554 50.000 0.00 0.00 0.00 2.75
507 519 1.208776 ACACCCATAACGCTTCCTACC 59.791 52.381 0.00 0.00 0.00 3.18
511 523 1.883926 ACAAACACCCATAACGCTTCC 59.116 47.619 0.00 0.00 0.00 3.46
516 528 2.792116 GTGCAAACAAACACCCATAACG 59.208 45.455 0.00 0.00 0.00 3.18
523 535 3.120373 CCAAAAGTGTGCAAACAAACACC 60.120 43.478 10.29 0.00 46.32 4.16
530 542 0.177836 AGGGCCAAAAGTGTGCAAAC 59.822 50.000 6.18 0.00 0.00 2.93
554 566 7.224557 CCAAAGTTTGCCAATTGGTATAATAGC 59.775 37.037 25.19 8.37 37.99 2.97
559 571 4.841246 ACCCAAAGTTTGCCAATTGGTATA 59.159 37.500 25.19 13.73 40.55 1.47
590 603 5.996644 TGAGGTTGAGAGTTTTTAAGGACA 58.003 37.500 0.00 0.00 0.00 4.02
592 605 6.289064 GTCTGAGGTTGAGAGTTTTTAAGGA 58.711 40.000 0.00 0.00 0.00 3.36
728 3221 6.944234 TTTCTTCTCCTTCCTTGTTCTTTC 57.056 37.500 0.00 0.00 0.00 2.62
810 3304 3.096092 GGGTGGAGGAAATTATGTTGCA 58.904 45.455 0.00 0.00 0.00 4.08
851 3345 3.604582 GGATGGAAGTCTGGAGTCTTTG 58.395 50.000 0.00 0.00 0.00 2.77
852 3346 2.573915 GGGATGGAAGTCTGGAGTCTTT 59.426 50.000 0.00 0.00 0.00 2.52
864 3358 1.550524 TGAGACGACTTGGGATGGAAG 59.449 52.381 0.00 0.00 0.00 3.46
943 3445 2.202676 CTTGGTCGCCGAGAGAGC 60.203 66.667 7.20 0.00 37.20 4.09
970 3472 2.043349 TGGTCTGGCTAGCGGCTA 60.043 61.111 9.00 9.71 41.46 3.93
971 3473 3.465403 CTGGTCTGGCTAGCGGCT 61.465 66.667 7.98 7.98 41.46 5.52
972 3474 3.316573 AACTGGTCTGGCTAGCGGC 62.317 63.158 9.00 0.00 40.90 6.53
973 3475 1.153549 GAACTGGTCTGGCTAGCGG 60.154 63.158 9.00 4.25 0.00 5.52
974 3476 1.517257 CGAACTGGTCTGGCTAGCG 60.517 63.158 9.00 0.00 0.00 4.26
975 3477 0.458716 GACGAACTGGTCTGGCTAGC 60.459 60.000 6.04 6.04 34.09 3.42
976 3478 0.173708 GGACGAACTGGTCTGGCTAG 59.826 60.000 0.00 0.00 37.12 3.42
1098 3617 3.179939 GAGAAGACCGGCGCGAAC 61.180 66.667 12.10 0.00 0.00 3.95
1233 3752 4.451150 TTGCTGGCGAGGTAGGCG 62.451 66.667 0.00 0.00 39.82 5.52
1743 4268 4.335647 CCCTGCCCGCAGTTCAGT 62.336 66.667 15.22 0.00 42.15 3.41
1790 4315 2.920912 ACGGCAGAAGGAACCCGA 60.921 61.111 4.82 0.00 43.20 5.14
2002 4530 1.150567 CTTCCAGGCGAATCAGAGCG 61.151 60.000 0.00 0.00 0.00 5.03
2103 4642 8.749354 AGAAATTTACTGAAACCTGAACAAAGT 58.251 29.630 0.00 0.00 0.00 2.66
2159 4755 3.195661 ACGACTTGTGAAGTTTGGACTC 58.804 45.455 0.00 0.00 43.03 3.36
2173 4769 1.800805 AGGATGAGCAACACGACTTG 58.199 50.000 0.00 0.00 0.00 3.16
2265 5101 2.035704 ACCGCATTGCATGTTTCTCAAA 59.964 40.909 9.69 0.00 0.00 2.69
2274 5110 2.255994 TTCAGCGACCGCATTGCATG 62.256 55.000 16.97 5.06 44.88 4.06
2287 5123 2.859538 ACACAAACTGCAATTTTCAGCG 59.140 40.909 0.00 0.00 35.04 5.18
2288 5124 4.329528 TGAACACAAACTGCAATTTTCAGC 59.670 37.500 0.00 0.00 35.04 4.26
2314 5150 3.576982 ACCTGACAGTGAGAATTAACCGA 59.423 43.478 0.00 0.00 0.00 4.69
2316 5152 6.635030 AAAACCTGACAGTGAGAATTAACC 57.365 37.500 0.00 0.00 0.00 2.85
2318 5154 6.764085 TCGAAAAACCTGACAGTGAGAATTAA 59.236 34.615 0.00 0.00 0.00 1.40
2319 5155 6.202188 GTCGAAAAACCTGACAGTGAGAATTA 59.798 38.462 0.00 0.00 32.91 1.40
2320 5156 5.007724 GTCGAAAAACCTGACAGTGAGAATT 59.992 40.000 0.00 0.00 32.91 2.17
2321 5157 4.511826 GTCGAAAAACCTGACAGTGAGAAT 59.488 41.667 0.00 0.00 32.91 2.40
2344 5180 2.358957 TGAAGTGAATGATGGCCTTCG 58.641 47.619 13.54 0.00 35.43 3.79
2363 5199 7.059488 GCACTGAACACAAATACTAACGATTTG 59.941 37.037 6.56 6.56 45.67 2.32
2438 5274 4.728772 CATATCATTCCAAGGCCCTGTTA 58.271 43.478 0.00 0.00 0.00 2.41
2465 5309 3.190874 CGAGTCCAGGTTTCTAGCATTC 58.809 50.000 0.00 0.00 0.00 2.67
2564 5408 5.622378 CAGTCGACTGGAAAATAGCTTTTC 58.378 41.667 33.36 0.00 46.27 2.29
2565 5409 5.613358 CAGTCGACTGGAAAATAGCTTTT 57.387 39.130 33.36 0.00 40.20 2.27
2578 5422 7.007188 CGTCTGTTACTAAAATACAGTCGACTG 59.993 40.741 37.50 37.50 46.62 3.51
2579 5423 7.020010 CGTCTGTTACTAAAATACAGTCGACT 58.980 38.462 13.58 13.58 46.62 4.18
2580 5424 7.017645 TCGTCTGTTACTAAAATACAGTCGAC 58.982 38.462 7.70 7.70 46.89 4.20
2582 5426 7.909121 AGATCGTCTGTTACTAAAATACAGTCG 59.091 37.037 12.49 12.49 45.76 4.18
2583 5427 9.224058 GAGATCGTCTGTTACTAAAATACAGTC 57.776 37.037 0.00 0.00 40.08 3.51
2584 5428 8.737175 TGAGATCGTCTGTTACTAAAATACAGT 58.263 33.333 0.00 0.00 40.08 3.55
2585 5429 9.227490 CTGAGATCGTCTGTTACTAAAATACAG 57.773 37.037 0.00 0.00 40.42 2.74
2586 5430 8.953313 TCTGAGATCGTCTGTTACTAAAATACA 58.047 33.333 0.00 0.00 0.00 2.29
2587 5431 9.440784 CTCTGAGATCGTCTGTTACTAAAATAC 57.559 37.037 0.00 0.00 0.00 1.89
2588 5432 8.129840 GCTCTGAGATCGTCTGTTACTAAAATA 58.870 37.037 9.28 0.00 0.00 1.40
2589 5433 6.975772 GCTCTGAGATCGTCTGTTACTAAAAT 59.024 38.462 9.28 0.00 0.00 1.82
2590 5434 6.323266 GCTCTGAGATCGTCTGTTACTAAAA 58.677 40.000 9.28 0.00 0.00 1.52
2591 5435 5.447413 CGCTCTGAGATCGTCTGTTACTAAA 60.447 44.000 9.28 0.00 0.00 1.85
2592 5436 4.034163 CGCTCTGAGATCGTCTGTTACTAA 59.966 45.833 9.28 0.00 0.00 2.24
2593 5437 3.556365 CGCTCTGAGATCGTCTGTTACTA 59.444 47.826 9.28 0.00 0.00 1.82
2594 5438 2.353269 CGCTCTGAGATCGTCTGTTACT 59.647 50.000 9.28 0.00 0.00 2.24
2595 5439 2.539953 CCGCTCTGAGATCGTCTGTTAC 60.540 54.545 9.28 0.00 0.00 2.50
2596 5440 1.671328 CCGCTCTGAGATCGTCTGTTA 59.329 52.381 9.28 0.00 0.00 2.41
2597 5441 0.453793 CCGCTCTGAGATCGTCTGTT 59.546 55.000 9.28 0.00 0.00 3.16
2598 5442 0.678366 ACCGCTCTGAGATCGTCTGT 60.678 55.000 9.28 0.00 0.00 3.41
2599 5443 0.028770 GACCGCTCTGAGATCGTCTG 59.971 60.000 9.28 0.00 0.00 3.51
2600 5444 0.393132 TGACCGCTCTGAGATCGTCT 60.393 55.000 9.28 0.00 0.00 4.18
2601 5445 0.028770 CTGACCGCTCTGAGATCGTC 59.971 60.000 9.28 10.04 0.00 4.20
2602 5446 0.393132 TCTGACCGCTCTGAGATCGT 60.393 55.000 9.28 0.00 0.00 3.73
2603 5447 0.950836 ATCTGACCGCTCTGAGATCG 59.049 55.000 9.28 0.00 0.00 3.69
2604 5448 4.217334 TCAATATCTGACCGCTCTGAGATC 59.783 45.833 9.28 3.12 28.95 2.75
2605 5449 4.148079 TCAATATCTGACCGCTCTGAGAT 58.852 43.478 9.28 0.00 30.02 2.75
2606 5450 3.555966 TCAATATCTGACCGCTCTGAGA 58.444 45.455 9.28 0.00 0.00 3.27
2607 5451 3.998099 TCAATATCTGACCGCTCTGAG 57.002 47.619 0.00 0.00 0.00 3.35
2608 5452 3.057946 CGATCAATATCTGACCGCTCTGA 60.058 47.826 0.00 0.00 33.26 3.27
2609 5453 3.240884 CGATCAATATCTGACCGCTCTG 58.759 50.000 0.00 0.00 33.26 3.35
2610 5454 3.567576 CGATCAATATCTGACCGCTCT 57.432 47.619 0.00 0.00 33.26 4.09
2614 5458 2.061773 GGTGCGATCAATATCTGACCG 58.938 52.381 0.00 0.00 44.69 4.79
2615 5459 3.321497 GAGGTGCGATCAATATCTGACC 58.679 50.000 0.00 0.00 36.69 4.02
2616 5460 3.321497 GGAGGTGCGATCAATATCTGAC 58.679 50.000 0.00 0.00 36.69 3.51
2617 5461 2.300152 GGGAGGTGCGATCAATATCTGA 59.700 50.000 0.00 0.00 38.81 3.27
2618 5462 2.693069 GGGAGGTGCGATCAATATCTG 58.307 52.381 0.00 0.00 0.00 2.90
2619 5463 1.273606 CGGGAGGTGCGATCAATATCT 59.726 52.381 0.00 0.00 0.00 1.98
2620 5464 1.272490 TCGGGAGGTGCGATCAATATC 59.728 52.381 0.00 0.00 0.00 1.63
2621 5465 1.273606 CTCGGGAGGTGCGATCAATAT 59.726 52.381 0.00 0.00 0.00 1.28
2622 5466 0.673985 CTCGGGAGGTGCGATCAATA 59.326 55.000 0.00 0.00 0.00 1.90
2623 5467 1.330655 ACTCGGGAGGTGCGATCAAT 61.331 55.000 0.00 0.00 0.00 2.57
2624 5468 1.982395 ACTCGGGAGGTGCGATCAA 60.982 57.895 0.00 0.00 0.00 2.57
2625 5469 2.362503 ACTCGGGAGGTGCGATCA 60.363 61.111 0.00 0.00 0.00 2.92
2626 5470 2.105128 CACTCGGGAGGTGCGATC 59.895 66.667 0.00 0.00 0.00 3.69
2627 5471 3.461773 CCACTCGGGAGGTGCGAT 61.462 66.667 0.00 0.00 40.01 4.58
2628 5472 4.671590 TCCACTCGGGAGGTGCGA 62.672 66.667 0.00 0.00 42.15 5.10
2636 5480 0.249489 GACGATGGAATCCACTCGGG 60.249 60.000 25.82 10.55 41.39 5.14
2637 5481 0.459899 TGACGATGGAATCCACTCGG 59.540 55.000 25.82 11.93 41.39 4.63
2638 5482 1.536922 CCTGACGATGGAATCCACTCG 60.537 57.143 22.89 22.89 41.39 4.18
2639 5483 1.202580 CCCTGACGATGGAATCCACTC 60.203 57.143 3.09 2.92 41.39 3.51
2640 5484 0.833287 CCCTGACGATGGAATCCACT 59.167 55.000 3.09 0.00 41.39 4.00
2641 5485 0.830648 TCCCTGACGATGGAATCCAC 59.169 55.000 3.09 0.00 41.39 4.02
2642 5486 1.209504 GTTCCCTGACGATGGAATCCA 59.790 52.381 3.67 3.67 41.39 3.41
2643 5487 1.209504 TGTTCCCTGACGATGGAATCC 59.790 52.381 0.00 0.00 41.39 3.01
2644 5488 2.168521 TCTGTTCCCTGACGATGGAATC 59.831 50.000 0.00 0.00 42.32 2.52
2645 5489 2.187958 TCTGTTCCCTGACGATGGAAT 58.812 47.619 0.00 0.00 42.32 3.01
2646 5490 1.639722 TCTGTTCCCTGACGATGGAA 58.360 50.000 0.00 0.00 38.30 3.53
2647 5491 1.275291 GTTCTGTTCCCTGACGATGGA 59.725 52.381 0.00 0.00 0.00 3.41
2648 5492 1.001974 TGTTCTGTTCCCTGACGATGG 59.998 52.381 0.00 0.00 0.00 3.51
2649 5493 2.069273 GTGTTCTGTTCCCTGACGATG 58.931 52.381 0.00 0.00 0.00 3.84
2650 5494 1.691976 TGTGTTCTGTTCCCTGACGAT 59.308 47.619 0.00 0.00 0.00 3.73
2651 5495 1.116308 TGTGTTCTGTTCCCTGACGA 58.884 50.000 0.00 0.00 0.00 4.20
2652 5496 2.069273 GATGTGTTCTGTTCCCTGACG 58.931 52.381 0.00 0.00 0.00 4.35
2653 5497 3.330267 GAGATGTGTTCTGTTCCCTGAC 58.670 50.000 0.00 0.00 33.74 3.51
2654 5498 2.303022 GGAGATGTGTTCTGTTCCCTGA 59.697 50.000 0.00 0.00 33.74 3.86
2655 5499 2.304180 AGGAGATGTGTTCTGTTCCCTG 59.696 50.000 0.00 0.00 33.74 4.45
2656 5500 2.569404 GAGGAGATGTGTTCTGTTCCCT 59.431 50.000 0.00 0.00 33.74 4.20
2657 5501 2.675317 CGAGGAGATGTGTTCTGTTCCC 60.675 54.545 0.00 0.00 33.74 3.97
2658 5502 2.028930 ACGAGGAGATGTGTTCTGTTCC 60.029 50.000 0.00 0.00 33.74 3.62
2659 5503 3.305398 ACGAGGAGATGTGTTCTGTTC 57.695 47.619 0.00 0.00 33.74 3.18
2660 5504 3.654414 GAACGAGGAGATGTGTTCTGTT 58.346 45.455 0.00 0.00 38.11 3.16
2661 5505 2.351835 CGAACGAGGAGATGTGTTCTGT 60.352 50.000 0.00 0.00 38.78 3.41
2662 5506 2.254459 CGAACGAGGAGATGTGTTCTG 58.746 52.381 0.00 0.00 38.78 3.02
2663 5507 1.402984 GCGAACGAGGAGATGTGTTCT 60.403 52.381 0.00 0.00 38.78 3.01
2664 5508 0.992802 GCGAACGAGGAGATGTGTTC 59.007 55.000 0.00 0.00 37.84 3.18
2665 5509 0.317160 TGCGAACGAGGAGATGTGTT 59.683 50.000 0.00 0.00 0.00 3.32
2666 5510 0.317160 TTGCGAACGAGGAGATGTGT 59.683 50.000 0.00 0.00 0.00 3.72
2667 5511 1.428448 TTTGCGAACGAGGAGATGTG 58.572 50.000 0.00 0.00 0.00 3.21
2668 5512 2.163818 TTTTGCGAACGAGGAGATGT 57.836 45.000 0.00 0.00 0.00 3.06
2669 5513 3.747099 ATTTTTGCGAACGAGGAGATG 57.253 42.857 0.00 0.00 0.00 2.90
2670 5514 5.873179 TTTATTTTTGCGAACGAGGAGAT 57.127 34.783 0.00 0.00 0.00 2.75
2671 5515 5.627172 CATTTATTTTTGCGAACGAGGAGA 58.373 37.500 0.00 0.00 0.00 3.71
2672 5516 4.262976 GCATTTATTTTTGCGAACGAGGAG 59.737 41.667 0.00 0.00 0.00 3.69
2673 5517 4.162812 GCATTTATTTTTGCGAACGAGGA 58.837 39.130 0.00 0.00 0.00 3.71
2674 5518 3.303229 GGCATTTATTTTTGCGAACGAGG 59.697 43.478 0.00 0.00 39.78 4.63
2675 5519 3.303229 GGGCATTTATTTTTGCGAACGAG 59.697 43.478 0.00 0.00 39.78 4.18
2676 5520 3.246619 GGGCATTTATTTTTGCGAACGA 58.753 40.909 0.00 0.00 39.78 3.85
2677 5521 2.347150 GGGGCATTTATTTTTGCGAACG 59.653 45.455 0.00 0.00 39.78 3.95
2678 5522 2.675844 GGGGGCATTTATTTTTGCGAAC 59.324 45.455 0.00 0.00 39.78 3.95
2679 5523 2.979240 GGGGGCATTTATTTTTGCGAA 58.021 42.857 0.00 0.00 39.78 4.70
2680 5524 2.682155 GGGGGCATTTATTTTTGCGA 57.318 45.000 0.00 0.00 39.78 5.10
2696 5540 2.038557 CACGGTTAGAATCCTATGGGGG 59.961 54.545 0.00 0.00 35.33 5.40
2697 5541 2.038557 CCACGGTTAGAATCCTATGGGG 59.961 54.545 0.00 0.00 0.00 4.96
2698 5542 2.704065 ACCACGGTTAGAATCCTATGGG 59.296 50.000 0.00 0.00 34.92 4.00
2699 5543 3.552273 CGACCACGGTTAGAATCCTATGG 60.552 52.174 0.00 0.00 35.97 2.74
2700 5544 3.639538 CGACCACGGTTAGAATCCTATG 58.360 50.000 0.00 0.00 35.72 2.23
2701 5545 2.035576 GCGACCACGGTTAGAATCCTAT 59.964 50.000 0.00 0.00 40.15 2.57
2702 5546 1.406539 GCGACCACGGTTAGAATCCTA 59.593 52.381 0.00 0.00 40.15 2.94
2703 5547 0.175073 GCGACCACGGTTAGAATCCT 59.825 55.000 0.00 0.00 40.15 3.24
2704 5548 2.674296 GCGACCACGGTTAGAATCC 58.326 57.895 0.00 0.00 40.15 3.01
2715 5559 2.029964 TTCCCGTGAAGCGACCAC 59.970 61.111 0.00 0.00 44.77 4.16
2716 5560 2.029964 GTTCCCGTGAAGCGACCA 59.970 61.111 0.00 0.00 44.77 4.02
2717 5561 2.029964 TGTTCCCGTGAAGCGACC 59.970 61.111 0.00 0.00 44.77 4.79
2718 5562 2.654912 CGTGTTCCCGTGAAGCGAC 61.655 63.158 0.00 0.00 44.77 5.19
2719 5563 2.355363 CGTGTTCCCGTGAAGCGA 60.355 61.111 0.00 0.00 44.77 4.93
2720 5564 2.355363 TCGTGTTCCCGTGAAGCG 60.355 61.111 0.00 0.00 40.95 4.68
2721 5565 2.027625 CCTCGTGTTCCCGTGAAGC 61.028 63.158 0.00 0.00 0.00 3.86
2722 5566 0.666577 GACCTCGTGTTCCCGTGAAG 60.667 60.000 0.00 0.00 0.00 3.02
2723 5567 1.364901 GACCTCGTGTTCCCGTGAA 59.635 57.895 0.00 0.00 0.00 3.18
2724 5568 1.393487 TTGACCTCGTGTTCCCGTGA 61.393 55.000 0.00 0.00 0.00 4.35
2725 5569 0.320421 ATTGACCTCGTGTTCCCGTG 60.320 55.000 0.00 0.00 0.00 4.94
2726 5570 1.259609 TATTGACCTCGTGTTCCCGT 58.740 50.000 0.00 0.00 0.00 5.28
2727 5571 1.997606 GTTATTGACCTCGTGTTCCCG 59.002 52.381 0.00 0.00 0.00 5.14
2728 5572 2.353323 GGTTATTGACCTCGTGTTCCC 58.647 52.381 0.00 0.00 45.55 3.97
2739 5583 1.890489 GTTGGTGGGGTGGTTATTGAC 59.110 52.381 0.00 0.00 0.00 3.18
2740 5584 1.545875 CGTTGGTGGGGTGGTTATTGA 60.546 52.381 0.00 0.00 0.00 2.57
2741 5585 0.885196 CGTTGGTGGGGTGGTTATTG 59.115 55.000 0.00 0.00 0.00 1.90
2742 5586 0.772384 TCGTTGGTGGGGTGGTTATT 59.228 50.000 0.00 0.00 0.00 1.40
2743 5587 0.996583 ATCGTTGGTGGGGTGGTTAT 59.003 50.000 0.00 0.00 0.00 1.89
2744 5588 0.325602 GATCGTTGGTGGGGTGGTTA 59.674 55.000 0.00 0.00 0.00 2.85
2745 5589 1.074248 GATCGTTGGTGGGGTGGTT 59.926 57.895 0.00 0.00 0.00 3.67
2746 5590 2.754375 GATCGTTGGTGGGGTGGT 59.246 61.111 0.00 0.00 0.00 4.16
2747 5591 2.045340 GGATCGTTGGTGGGGTGG 60.045 66.667 0.00 0.00 0.00 4.61
2748 5592 2.435938 CGGATCGTTGGTGGGGTG 60.436 66.667 0.00 0.00 0.00 4.61
2749 5593 2.926242 ACGGATCGTTGGTGGGGT 60.926 61.111 0.00 0.00 36.35 4.95
2758 5602 4.625972 AAAAGAAACACAAACGGATCGT 57.374 36.364 0.00 0.00 43.97 3.73
2759 5603 5.115021 GCTTAAAAGAAACACAAACGGATCG 59.885 40.000 0.00 0.00 0.00 3.69
2760 5604 5.401376 GGCTTAAAAGAAACACAAACGGATC 59.599 40.000 0.00 0.00 0.00 3.36
2761 5605 5.163499 TGGCTTAAAAGAAACACAAACGGAT 60.163 36.000 0.00 0.00 0.00 4.18
2762 5606 4.158025 TGGCTTAAAAGAAACACAAACGGA 59.842 37.500 0.00 0.00 0.00 4.69
2763 5607 4.425520 TGGCTTAAAAGAAACACAAACGG 58.574 39.130 0.00 0.00 0.00 4.44
2764 5608 5.575218 ACTTGGCTTAAAAGAAACACAAACG 59.425 36.000 0.00 0.00 0.00 3.60
2765 5609 6.961359 ACTTGGCTTAAAAGAAACACAAAC 57.039 33.333 0.00 0.00 0.00 2.93
2766 5610 7.832769 AGTACTTGGCTTAAAAGAAACACAAA 58.167 30.769 0.00 0.00 0.00 2.83
2767 5611 7.399245 AGTACTTGGCTTAAAAGAAACACAA 57.601 32.000 0.00 0.00 0.00 3.33
2768 5612 7.399245 AAGTACTTGGCTTAAAAGAAACACA 57.601 32.000 7.48 0.00 0.00 3.72
2769 5613 9.961265 ATAAAGTACTTGGCTTAAAAGAAACAC 57.039 29.630 9.34 0.00 0.00 3.32
2770 5614 9.959749 CATAAAGTACTTGGCTTAAAAGAAACA 57.040 29.630 9.34 0.00 0.00 2.83
2771 5615 9.961265 ACATAAAGTACTTGGCTTAAAAGAAAC 57.039 29.630 9.34 0.00 0.00 2.78
2772 5616 9.959749 CACATAAAGTACTTGGCTTAAAAGAAA 57.040 29.630 9.34 0.00 0.00 2.52
2773 5617 9.344772 TCACATAAAGTACTTGGCTTAAAAGAA 57.655 29.630 9.34 0.00 0.00 2.52
2774 5618 8.780249 GTCACATAAAGTACTTGGCTTAAAAGA 58.220 33.333 9.34 0.00 0.00 2.52
2775 5619 8.021396 GGTCACATAAAGTACTTGGCTTAAAAG 58.979 37.037 9.34 0.00 0.00 2.27
2776 5620 7.722285 AGGTCACATAAAGTACTTGGCTTAAAA 59.278 33.333 9.34 0.00 0.00 1.52
2777 5621 7.228590 AGGTCACATAAAGTACTTGGCTTAAA 58.771 34.615 9.34 0.00 0.00 1.52
2778 5622 6.775708 AGGTCACATAAAGTACTTGGCTTAA 58.224 36.000 9.34 0.00 0.00 1.85
2779 5623 6.368779 AGGTCACATAAAGTACTTGGCTTA 57.631 37.500 9.34 0.00 0.00 3.09
2780 5624 5.242795 AGGTCACATAAAGTACTTGGCTT 57.757 39.130 9.34 0.00 0.00 4.35
2781 5625 4.910458 AGGTCACATAAAGTACTTGGCT 57.090 40.909 9.34 0.00 0.00 4.75
2782 5626 5.959618 AAAGGTCACATAAAGTACTTGGC 57.040 39.130 9.34 0.00 0.00 4.52
2783 5627 7.272037 ACAAAAGGTCACATAAAGTACTTGG 57.728 36.000 9.34 4.83 0.00 3.61
2798 5642 5.290158 TCGCATTTAGTATCGACAAAAGGTC 59.710 40.000 0.00 0.00 43.36 3.85
2799 5643 5.172934 TCGCATTTAGTATCGACAAAAGGT 58.827 37.500 0.00 0.00 0.00 3.50
2800 5644 5.291128 ACTCGCATTTAGTATCGACAAAAGG 59.709 40.000 0.00 0.00 0.00 3.11
2801 5645 6.034577 TCACTCGCATTTAGTATCGACAAAAG 59.965 38.462 0.00 0.00 0.00 2.27
2802 5646 5.865013 TCACTCGCATTTAGTATCGACAAAA 59.135 36.000 0.00 0.00 0.00 2.44
2803 5647 5.404096 TCACTCGCATTTAGTATCGACAAA 58.596 37.500 0.00 0.00 0.00 2.83
2804 5648 4.989044 TCACTCGCATTTAGTATCGACAA 58.011 39.130 0.00 0.00 0.00 3.18
2805 5649 4.625972 TCACTCGCATTTAGTATCGACA 57.374 40.909 0.00 0.00 0.00 4.35
2806 5650 5.944049 TTTCACTCGCATTTAGTATCGAC 57.056 39.130 0.00 0.00 0.00 4.20
2807 5651 6.809689 TCTTTTTCACTCGCATTTAGTATCGA 59.190 34.615 0.00 0.00 0.00 3.59
2808 5652 6.989437 TCTTTTTCACTCGCATTTAGTATCG 58.011 36.000 0.00 0.00 0.00 2.92
2809 5653 9.607285 TTTTCTTTTTCACTCGCATTTAGTATC 57.393 29.630 0.00 0.00 0.00 2.24
2810 5654 9.612620 CTTTTCTTTTTCACTCGCATTTAGTAT 57.387 29.630 0.00 0.00 0.00 2.12
2811 5655 8.073768 CCTTTTCTTTTTCACTCGCATTTAGTA 58.926 33.333 0.00 0.00 0.00 1.82
2812 5656 6.918022 CCTTTTCTTTTTCACTCGCATTTAGT 59.082 34.615 0.00 0.00 0.00 2.24
2813 5657 6.363357 CCCTTTTCTTTTTCACTCGCATTTAG 59.637 38.462 0.00 0.00 0.00 1.85
2814 5658 6.039941 TCCCTTTTCTTTTTCACTCGCATTTA 59.960 34.615 0.00 0.00 0.00 1.40
2815 5659 5.049828 CCCTTTTCTTTTTCACTCGCATTT 58.950 37.500 0.00 0.00 0.00 2.32
2816 5660 4.340950 TCCCTTTTCTTTTTCACTCGCATT 59.659 37.500 0.00 0.00 0.00 3.56
2817 5661 3.888930 TCCCTTTTCTTTTTCACTCGCAT 59.111 39.130 0.00 0.00 0.00 4.73
2818 5662 3.283751 TCCCTTTTCTTTTTCACTCGCA 58.716 40.909 0.00 0.00 0.00 5.10
2819 5663 3.982576 TCCCTTTTCTTTTTCACTCGC 57.017 42.857 0.00 0.00 0.00 5.03
2840 5684 3.153919 TCAAATCCCGCTAGCTGTTTTT 58.846 40.909 13.93 5.55 0.00 1.94
2841 5685 2.749621 CTCAAATCCCGCTAGCTGTTTT 59.250 45.455 13.93 8.46 0.00 2.43
2842 5686 2.359900 CTCAAATCCCGCTAGCTGTTT 58.640 47.619 13.93 5.52 0.00 2.83
2843 5687 2.014068 GCTCAAATCCCGCTAGCTGTT 61.014 52.381 13.93 0.00 0.00 3.16
2844 5688 0.462759 GCTCAAATCCCGCTAGCTGT 60.463 55.000 13.93 0.00 0.00 4.40
2845 5689 1.162800 GGCTCAAATCCCGCTAGCTG 61.163 60.000 13.93 6.10 33.67 4.24
2846 5690 1.147153 GGCTCAAATCCCGCTAGCT 59.853 57.895 13.93 0.00 33.67 3.32
2847 5691 0.393077 TAGGCTCAAATCCCGCTAGC 59.607 55.000 4.06 4.06 0.00 3.42
2848 5692 1.689273 AGTAGGCTCAAATCCCGCTAG 59.311 52.381 0.00 0.00 0.00 3.42
2849 5693 1.789523 AGTAGGCTCAAATCCCGCTA 58.210 50.000 0.00 0.00 0.00 4.26
2850 5694 1.689273 CTAGTAGGCTCAAATCCCGCT 59.311 52.381 0.00 0.00 0.00 5.52
2851 5695 1.687123 TCTAGTAGGCTCAAATCCCGC 59.313 52.381 0.00 0.00 0.00 6.13
2852 5696 3.574396 TCATCTAGTAGGCTCAAATCCCG 59.426 47.826 0.00 0.00 0.00 5.14
2853 5697 4.559704 CGTCATCTAGTAGGCTCAAATCCC 60.560 50.000 0.00 0.00 0.00 3.85
2854 5698 4.038162 ACGTCATCTAGTAGGCTCAAATCC 59.962 45.833 0.00 0.00 0.00 3.01
2855 5699 5.189659 ACGTCATCTAGTAGGCTCAAATC 57.810 43.478 0.00 0.00 0.00 2.17
2856 5700 5.452077 GGAACGTCATCTAGTAGGCTCAAAT 60.452 44.000 0.00 0.00 0.00 2.32
2857 5701 4.142227 GGAACGTCATCTAGTAGGCTCAAA 60.142 45.833 0.00 0.00 0.00 2.69
2858 5702 3.380637 GGAACGTCATCTAGTAGGCTCAA 59.619 47.826 0.00 0.00 0.00 3.02
2859 5703 2.950309 GGAACGTCATCTAGTAGGCTCA 59.050 50.000 0.00 0.00 0.00 4.26
2860 5704 2.950309 TGGAACGTCATCTAGTAGGCTC 59.050 50.000 0.00 0.00 0.00 4.70
2861 5705 3.014304 TGGAACGTCATCTAGTAGGCT 57.986 47.619 0.00 0.00 0.00 4.58
2862 5706 3.318275 TCATGGAACGTCATCTAGTAGGC 59.682 47.826 0.00 0.00 0.00 3.93
2863 5707 5.241728 TGATCATGGAACGTCATCTAGTAGG 59.758 44.000 0.00 0.00 0.00 3.18
2864 5708 6.146216 GTGATCATGGAACGTCATCTAGTAG 58.854 44.000 0.00 0.00 0.00 2.57
2865 5709 5.277828 CGTGATCATGGAACGTCATCTAGTA 60.278 44.000 7.06 0.00 32.79 1.82
2866 5710 4.498177 CGTGATCATGGAACGTCATCTAGT 60.498 45.833 7.06 0.00 32.79 2.57
2867 5711 3.977579 CGTGATCATGGAACGTCATCTAG 59.022 47.826 7.06 0.00 32.79 2.43
2868 5712 3.630312 TCGTGATCATGGAACGTCATCTA 59.370 43.478 14.91 0.00 38.43 1.98
2869 5713 2.427095 TCGTGATCATGGAACGTCATCT 59.573 45.455 14.91 0.00 38.43 2.90
2870 5714 2.809446 TCGTGATCATGGAACGTCATC 58.191 47.619 14.91 0.00 38.43 2.92
2871 5715 2.959507 TCGTGATCATGGAACGTCAT 57.040 45.000 14.91 0.00 38.43 3.06
2872 5716 2.165437 TGATCGTGATCATGGAACGTCA 59.835 45.455 14.91 8.81 42.42 4.35
2873 5717 2.791560 CTGATCGTGATCATGGAACGTC 59.208 50.000 14.91 6.67 45.74 4.34
2874 5718 2.814269 CTGATCGTGATCATGGAACGT 58.186 47.619 14.91 0.00 45.74 3.99
2875 5719 1.524355 GCTGATCGTGATCATGGAACG 59.476 52.381 14.91 5.72 45.74 3.95
2876 5720 2.831333 AGCTGATCGTGATCATGGAAC 58.169 47.619 14.91 7.43 45.74 3.62
2877 5721 3.118665 TCAAGCTGATCGTGATCATGGAA 60.119 43.478 14.91 0.00 45.74 3.53
2878 5722 2.431782 TCAAGCTGATCGTGATCATGGA 59.568 45.455 14.91 8.36 45.74 3.41
2879 5723 2.543012 GTCAAGCTGATCGTGATCATGG 59.457 50.000 14.91 4.21 45.74 3.66
2880 5724 3.455327 AGTCAAGCTGATCGTGATCATG 58.545 45.455 12.62 8.74 45.74 3.07
2881 5725 3.815856 AGTCAAGCTGATCGTGATCAT 57.184 42.857 12.62 0.00 45.74 2.45
2882 5726 4.718940 TTAGTCAAGCTGATCGTGATCA 57.281 40.909 11.75 11.75 44.83 2.92
2883 5727 7.142021 TCTATTTAGTCAAGCTGATCGTGATC 58.858 38.462 2.86 2.86 35.71 2.92
2884 5728 7.043961 TCTATTTAGTCAAGCTGATCGTGAT 57.956 36.000 0.00 0.00 35.71 3.06
2885 5729 6.095580 ACTCTATTTAGTCAAGCTGATCGTGA 59.904 38.462 0.00 0.00 0.00 4.35
2886 5730 6.269315 ACTCTATTTAGTCAAGCTGATCGTG 58.731 40.000 0.00 0.00 0.00 4.35
2887 5731 6.458232 ACTCTATTTAGTCAAGCTGATCGT 57.542 37.500 0.00 0.00 0.00 3.73
2888 5732 7.644490 AGTACTCTATTTAGTCAAGCTGATCG 58.356 38.462 0.00 0.00 0.00 3.69
2889 5733 9.810545 AAAGTACTCTATTTAGTCAAGCTGATC 57.189 33.333 0.00 0.00 0.00 2.92
2891 5735 9.998106 AAAAAGTACTCTATTTAGTCAAGCTGA 57.002 29.630 0.00 0.00 0.00 4.26
2893 5737 9.780186 ACAAAAAGTACTCTATTTAGTCAAGCT 57.220 29.630 0.00 0.00 0.00 3.74
2947 5791 7.418337 AGAAAACCTAGGTTGATGTGTTTTT 57.582 32.000 27.75 14.35 38.47 1.94
2948 5792 8.706322 ATAGAAAACCTAGGTTGATGTGTTTT 57.294 30.769 27.75 15.07 38.47 2.43
2949 5793 8.706322 AATAGAAAACCTAGGTTGATGTGTTT 57.294 30.769 27.75 15.80 38.47 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.