Multiple sequence alignment - TraesCS3D01G438100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G438100 chr3D 100.000 4977 0 0 493 5469 548813505 548818481 0.000000e+00 9191.0
1 TraesCS3D01G438100 chr3D 100.000 295 0 0 1 295 548813013 548813307 3.730000e-151 545.0
2 TraesCS3D01G438100 chr3D 84.597 409 52 4 2901 3309 597618600 597618997 3.970000e-106 396.0
3 TraesCS3D01G438100 chr3D 86.752 234 29 2 2157 2389 597617938 597618170 5.430000e-65 259.0
4 TraesCS3D01G438100 chr3D 97.273 110 3 0 1236 1345 597616992 597617101 2.600000e-43 187.0
5 TraesCS3D01G438100 chr3D 82.160 213 28 10 5264 5469 609903058 609902849 2.030000e-39 174.0
6 TraesCS3D01G438100 chr3D 83.069 189 27 5 1532 1718 597617306 597617491 3.390000e-37 167.0
7 TraesCS3D01G438100 chr3D 88.119 101 12 0 5063 5163 548803039 548802939 2.680000e-23 121.0
8 TraesCS3D01G438100 chr3D 73.504 234 56 6 19 248 39586824 39586593 3.510000e-12 84.2
9 TraesCS3D01G438100 chr3D 90.164 61 5 1 4250 4309 597620066 597620126 1.630000e-10 78.7
10 TraesCS3D01G438100 chr3B 89.398 2575 179 48 2157 4680 728133943 728136474 0.000000e+00 3157.0
11 TraesCS3D01G438100 chr3B 90.658 1231 68 32 663 1874 728132555 728133757 0.000000e+00 1592.0
12 TraesCS3D01G438100 chr3B 81.078 946 126 31 2420 3355 804318814 804319716 0.000000e+00 706.0
13 TraesCS3D01G438100 chr3B 81.203 798 106 24 3373 4131 804380206 804380998 2.180000e-168 603.0
14 TraesCS3D01G438100 chr3B 80.657 822 106 26 3373 4151 804319975 804320786 6.100000e-164 588.0
15 TraesCS3D01G438100 chr3B 83.013 624 66 19 2192 2798 804373927 804374527 3.750000e-146 529.0
16 TraesCS3D01G438100 chr3B 80.892 471 59 14 2888 3355 804379506 804379948 5.250000e-90 342.0
17 TraesCS3D01G438100 chr3B 79.048 525 63 25 919 1399 804317060 804317581 3.180000e-82 316.0
18 TraesCS3D01G438100 chr3B 90.654 214 8 4 5063 5267 728136734 728136944 1.940000e-69 274.0
19 TraesCS3D01G438100 chr3B 87.678 211 25 1 2178 2388 804318610 804318819 1.520000e-60 244.0
20 TraesCS3D01G438100 chr3B 87.615 218 13 7 5063 5267 728080776 728080560 1.970000e-59 241.0
21 TraesCS3D01G438100 chr3B 96.479 142 5 0 5063 5204 727937430 727937289 9.160000e-58 235.0
22 TraesCS3D01G438100 chr3B 90.798 163 15 0 1236 1398 375544429 375544591 9.220000e-53 219.0
23 TraesCS3D01G438100 chr3B 84.507 213 23 8 5264 5469 778447485 778447694 9.290000e-48 202.0
24 TraesCS3D01G438100 chr3B 87.273 165 18 3 1955 2117 728133789 728133952 9.360000e-43 185.0
25 TraesCS3D01G438100 chr3B 75.238 210 43 7 4250 4459 804320910 804321110 2.100000e-14 91.6
26 TraesCS3D01G438100 chr3B 82.353 102 17 1 5063 5163 727966041 727965940 2.710000e-13 87.9
27 TraesCS3D01G438100 chr3B 95.238 42 2 0 4998 5039 63390538 63390579 3.540000e-07 67.6
28 TraesCS3D01G438100 chr3B 93.333 45 2 1 4992 5036 253488780 253488823 1.270000e-06 65.8
29 TraesCS3D01G438100 chr3B 91.304 46 4 0 4998 5043 111126592 111126547 4.570000e-06 63.9
30 TraesCS3D01G438100 chr3A 91.108 1642 87 25 3371 4988 686242644 686244250 0.000000e+00 2169.0
31 TraesCS3D01G438100 chr3A 92.182 1228 68 11 493 1712 686239501 686240708 0.000000e+00 1711.0
32 TraesCS3D01G438100 chr3A 89.383 1215 79 12 2157 3340 686241235 686242430 0.000000e+00 1483.0
33 TraesCS3D01G438100 chr3A 80.981 1162 152 36 2193 3330 727486681 727487797 0.000000e+00 857.0
34 TraesCS3D01G438100 chr3A 81.725 777 100 27 3373 4129 727488039 727488793 1.300000e-170 610.0
35 TraesCS3D01G438100 chr3A 92.784 388 23 4 1714 2096 686240842 686241229 1.720000e-154 556.0
36 TraesCS3D01G438100 chr3A 86.780 295 28 5 3 295 686239130 686239415 8.840000e-83 318.0
37 TraesCS3D01G438100 chr3A 95.238 168 8 0 1231 1398 727485680 727485847 3.250000e-67 267.0
38 TraesCS3D01G438100 chr3A 88.439 173 15 3 5063 5232 686194246 686194076 2.580000e-48 204.0
39 TraesCS3D01G438100 chr3A 94.574 129 5 2 5081 5209 686244279 686244405 1.200000e-46 198.0
40 TraesCS3D01G438100 chr3A 94.318 88 5 0 4901 4988 686194350 686194263 9.560000e-28 135.0
41 TraesCS3D01G438100 chr3A 91.667 60 5 0 4250 4309 727488937 727488996 3.510000e-12 84.2
42 TraesCS3D01G438100 chr3A 91.525 59 5 0 1656 1714 727486262 727486320 1.260000e-11 82.4
43 TraesCS3D01G438100 chr2A 81.157 1141 142 29 2193 3315 605037158 605036073 0.000000e+00 848.0
44 TraesCS3D01G438100 chr2A 78.893 1066 132 35 2280 3309 605106896 605105888 2.150000e-178 636.0
45 TraesCS3D01G438100 chr2A 82.292 672 83 16 3379 4020 605035780 605035115 2.880000e-152 549.0
46 TraesCS3D01G438100 chr2A 80.720 472 49 25 936 1398 605038436 605037998 4.080000e-86 329.0
47 TraesCS3D01G438100 chr2A 94.340 159 9 0 1240 1398 605112868 605112710 1.520000e-60 244.0
48 TraesCS3D01G438100 chr2A 83.500 200 29 4 1516 1714 605037715 605037519 3.360000e-42 183.0
49 TraesCS3D01G438100 chr2A 85.795 176 18 6 3959 4129 605104863 605104690 4.350000e-41 180.0
50 TraesCS3D01G438100 chr2A 82.902 193 24 7 5281 5469 335708703 335708516 1.220000e-36 165.0
51 TraesCS3D01G438100 chr2A 75.962 208 41 6 4253 4460 605104542 605104344 1.250000e-16 99.0
52 TraesCS3D01G438100 chr5A 88.095 210 19 4 5262 5469 348604680 348604885 1.520000e-60 244.0
53 TraesCS3D01G438100 chr7A 88.350 206 18 4 5264 5466 181796124 181796326 5.470000e-60 243.0
54 TraesCS3D01G438100 chr4D 84.211 209 29 4 5263 5469 222965659 222965453 3.340000e-47 200.0
55 TraesCS3D01G438100 chr4A 84.390 205 26 6 5263 5466 434039486 434039685 4.320000e-46 196.0
56 TraesCS3D01G438100 chr4A 82.039 206 34 3 5261 5465 36529212 36529009 7.280000e-39 172.0
57 TraesCS3D01G438100 chr4A 76.617 201 44 3 21 219 625256431 625256630 2.080000e-19 108.0
58 TraesCS3D01G438100 chr6D 81.818 209 24 12 5262 5465 291413372 291413173 4.380000e-36 163.0
59 TraesCS3D01G438100 chr6D 91.304 46 3 1 4996 5040 108554676 108554631 1.640000e-05 62.1
60 TraesCS3D01G438100 chr7B 75.000 236 52 6 21 255 327483913 327483684 9.690000e-18 102.0
61 TraesCS3D01G438100 chr5D 92.727 55 3 1 4985 5039 524487972 524487919 1.630000e-10 78.7
62 TraesCS3D01G438100 chr1B 93.878 49 2 1 4992 5040 664973209 664973256 7.600000e-09 73.1
63 TraesCS3D01G438100 chr1B 95.122 41 2 0 4999 5039 205418804 205418844 1.270000e-06 65.8
64 TraesCS3D01G438100 chr7D 81.707 82 13 2 499 579 96505766 96505846 3.540000e-07 67.6
65 TraesCS3D01G438100 chr1D 95.238 42 2 0 4998 5039 380770445 380770404 3.540000e-07 67.6
66 TraesCS3D01G438100 chr4B 89.362 47 5 0 4998 5044 653287187 653287141 5.920000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G438100 chr3D 548813013 548818481 5468 False 4868.00 9191 100.000000 1 5469 2 chr3D.!!$F1 5468
1 TraesCS3D01G438100 chr3D 597616992 597620126 3134 False 217.54 396 88.371000 1236 4309 5 chr3D.!!$F2 3073
2 TraesCS3D01G438100 chr3B 728132555 728136944 4389 False 1302.00 3157 89.495750 663 5267 4 chr3B.!!$F6 4604
3 TraesCS3D01G438100 chr3B 804373927 804374527 600 False 529.00 529 83.013000 2192 2798 1 chr3B.!!$F5 606
4 TraesCS3D01G438100 chr3B 804379506 804380998 1492 False 472.50 603 81.047500 2888 4131 2 chr3B.!!$F8 1243
5 TraesCS3D01G438100 chr3B 804317060 804321110 4050 False 389.12 706 80.739800 919 4459 5 chr3B.!!$F7 3540
6 TraesCS3D01G438100 chr3A 686239130 686244405 5275 False 1072.50 2169 91.135167 3 5209 6 chr3A.!!$F1 5206
7 TraesCS3D01G438100 chr3A 727485680 727488996 3316 False 380.12 857 88.227200 1231 4309 5 chr3A.!!$F2 3078
8 TraesCS3D01G438100 chr2A 605035115 605038436 3321 True 477.25 848 81.917250 936 4020 4 chr2A.!!$R3 3084
9 TraesCS3D01G438100 chr2A 605104344 605106896 2552 True 305.00 636 80.216667 2280 4460 3 chr2A.!!$R4 2180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 541 0.179062 CGAAGCTTGGAGGGGATGAG 60.179 60.0 2.10 0.00 0.0 2.90 F
1874 2519 0.394762 GATGGGTCAGCATTGCTCCA 60.395 55.0 17.12 17.12 36.4 3.86 F
2619 3404 0.179129 CCAGGAAAATGCGTGATGCC 60.179 55.0 0.00 0.00 45.6 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 2977 0.473755 TCCAACATGGCAGTGACTGT 59.526 50.0 14.82 0.0 37.47 3.55 R
3757 4882 0.324614 TCAGAAATTCAGGCAGGCGA 59.675 50.0 0.00 0.0 0.00 5.54 R
4562 5896 0.308993 GCTCTCAGTGTGTTGTTGGC 59.691 55.0 0.00 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.550855 GCTTGACCTGGTTGATGACAGA 60.551 50.000 0.00 0.00 36.86 3.41
41 42 4.623886 GCTTGACCTGGTTGATGACAGATA 60.624 45.833 0.00 0.00 36.86 1.98
46 47 4.536090 ACCTGGTTGATGACAGATAGGAAA 59.464 41.667 0.00 0.00 36.86 3.13
63 64 2.482490 GGAAATCTTCATGCATGTGCCC 60.482 50.000 25.43 13.88 41.18 5.36
78 79 0.539986 TGCCCCTAAAGACCATCGTC 59.460 55.000 0.00 0.00 39.50 4.20
80 81 0.468648 CCCCTAAAGACCATCGTCCC 59.531 60.000 0.00 0.00 40.12 4.46
81 82 1.200519 CCCTAAAGACCATCGTCCCA 58.799 55.000 0.00 0.00 40.12 4.37
82 83 1.139058 CCCTAAAGACCATCGTCCCAG 59.861 57.143 0.00 0.00 40.12 4.45
83 84 2.108168 CCTAAAGACCATCGTCCCAGA 58.892 52.381 0.00 0.00 40.12 3.86
84 85 2.101582 CCTAAAGACCATCGTCCCAGAG 59.898 54.545 0.00 0.00 40.12 3.35
85 86 0.250513 AAAGACCATCGTCCCAGAGC 59.749 55.000 0.00 0.00 40.12 4.09
86 87 1.617947 AAGACCATCGTCCCAGAGCC 61.618 60.000 0.00 0.00 40.12 4.70
87 88 2.284625 ACCATCGTCCCAGAGCCA 60.285 61.111 0.00 0.00 0.00 4.75
102 103 0.625316 AGCCACTGCCATCACCATTA 59.375 50.000 0.00 0.00 38.69 1.90
105 106 3.074985 AGCCACTGCCATCACCATTATAT 59.925 43.478 0.00 0.00 38.69 0.86
124 125 8.602328 CATTATATCCTTGAATCGATCTGAAGC 58.398 37.037 0.00 0.00 0.00 3.86
163 164 3.945434 GCCCGCATGCACGATGAG 61.945 66.667 19.57 0.00 33.31 2.90
167 168 0.247814 CCGCATGCACGATGAGAAAC 60.248 55.000 19.57 0.00 33.89 2.78
170 171 1.742761 CATGCACGATGAGAAACCCT 58.257 50.000 0.00 0.00 33.31 4.34
177 178 2.165845 ACGATGAGAAACCCTAACCTCG 59.834 50.000 0.00 0.00 0.00 4.63
178 179 2.165845 CGATGAGAAACCCTAACCTCGT 59.834 50.000 0.00 0.00 0.00 4.18
186 187 0.252197 CCCTAACCTCGTCCCCAAAG 59.748 60.000 0.00 0.00 0.00 2.77
187 188 0.252197 CCTAACCTCGTCCCCAAAGG 59.748 60.000 0.00 0.00 36.21 3.11
188 189 1.272807 CTAACCTCGTCCCCAAAGGA 58.727 55.000 0.00 0.00 44.91 3.36
199 200 1.846439 CCCCAAAGGAGATAGCAGGAA 59.154 52.381 0.00 0.00 38.24 3.36
202 203 3.393941 CCCAAAGGAGATAGCAGGAATCT 59.606 47.826 0.00 0.00 36.40 2.40
204 205 5.512232 CCCAAAGGAGATAGCAGGAATCTAC 60.512 48.000 0.00 0.00 34.92 2.59
211 212 1.143183 GCAGGAATCTACGCCGGAA 59.857 57.895 5.05 0.00 0.00 4.30
228 229 1.201647 GGAACTCCGTCGACTTCATCA 59.798 52.381 14.70 0.00 0.00 3.07
231 232 1.200252 ACTCCGTCGACTTCATCACAG 59.800 52.381 14.70 0.36 0.00 3.66
242 243 5.597813 ACTTCATCACAGTGAACGAATTC 57.402 39.130 7.50 0.00 34.58 2.17
278 279 0.530650 TCGAAGATGAAGCGCCATCC 60.531 55.000 19.14 7.60 42.89 3.51
282 283 2.124151 ATGAAGCGCCATCCACCC 60.124 61.111 2.29 0.00 0.00 4.61
285 286 1.976474 GAAGCGCCATCCACCCAAA 60.976 57.895 2.29 0.00 0.00 3.28
289 290 2.676471 GCCATCCACCCAAACGCT 60.676 61.111 0.00 0.00 0.00 5.07
290 291 2.993471 GCCATCCACCCAAACGCTG 61.993 63.158 0.00 0.00 0.00 5.18
294 295 4.974721 CCACCCAAACGCTGCCCT 62.975 66.667 0.00 0.00 0.00 5.19
511 512 2.590092 GGGGAGGTTGATCCACGG 59.410 66.667 0.00 0.00 41.52 4.94
520 521 4.467084 GATCCACGGGCTCGCCAA 62.467 66.667 5.51 0.00 40.63 4.52
540 541 0.179062 CGAAGCTTGGAGGGGATGAG 60.179 60.000 2.10 0.00 0.00 2.90
543 544 1.452833 GCTTGGAGGGGATGAGTGC 60.453 63.158 0.00 0.00 0.00 4.40
551 552 1.146263 GGGATGAGTGCCCTAACCG 59.854 63.158 0.00 0.00 42.56 4.44
552 553 1.523938 GGATGAGTGCCCTAACCGC 60.524 63.158 0.00 0.00 0.00 5.68
554 555 1.972660 GATGAGTGCCCTAACCGCCT 61.973 60.000 0.00 0.00 0.00 5.52
555 556 0.689745 ATGAGTGCCCTAACCGCCTA 60.690 55.000 0.00 0.00 0.00 3.93
570 571 1.415200 GCCTAGAACGGAAGAGGGAT 58.585 55.000 0.00 0.00 0.00 3.85
571 572 2.595238 GCCTAGAACGGAAGAGGGATA 58.405 52.381 0.00 0.00 0.00 2.59
579 580 3.709587 ACGGAAGAGGGATAGAGAAACA 58.290 45.455 0.00 0.00 0.00 2.83
581 582 3.489398 CGGAAGAGGGATAGAGAAACACG 60.489 52.174 0.00 0.00 0.00 4.49
583 584 4.159879 GGAAGAGGGATAGAGAAACACGAA 59.840 45.833 0.00 0.00 0.00 3.85
598 599 9.659830 GAGAAACACGAACAATATTAAACAAGT 57.340 29.630 0.00 0.00 0.00 3.16
603 604 9.959749 ACACGAACAATATTAAACAAGTTTGAT 57.040 25.926 8.37 8.09 34.00 2.57
661 664 8.463930 TCAAATGAAGGGAATAATATCACACC 57.536 34.615 0.00 0.00 0.00 4.16
676 679 2.043980 CACCATTACACCCGGTGGC 61.044 63.158 21.77 0.00 45.32 5.01
775 778 1.084370 CACCTTCTGATCGTTCCGCC 61.084 60.000 0.00 0.00 0.00 6.13
791 795 4.824166 CCGCGTACCTCACCGACG 62.824 72.222 4.92 0.00 39.55 5.12
804 808 4.436998 CGACGCTCAGACCCCACC 62.437 72.222 0.00 0.00 0.00 4.61
916 921 1.016653 GCGCTTCCTGTCCTTCTGAC 61.017 60.000 0.00 0.00 44.72 3.51
949 954 2.758979 CCCGCTAACTCTGTCTTCCTTA 59.241 50.000 0.00 0.00 0.00 2.69
1221 1263 7.201556 GCTTTCGATTCTGAAGATTGATGTGTA 60.202 37.037 0.00 0.00 0.00 2.90
1399 1459 2.478890 ATCGTCACGGCCGAGGTAG 61.479 63.158 35.90 18.33 37.81 3.18
1472 1876 7.413475 AACAGAGTAATATCGTCAATGATGC 57.587 36.000 0.00 0.00 0.00 3.91
1476 1880 6.592994 AGAGTAATATCGTCAATGATGCATGG 59.407 38.462 2.46 0.00 0.00 3.66
1478 1882 2.643995 ATCGTCAATGATGCATGGGA 57.356 45.000 2.46 0.00 0.00 4.37
1479 1883 1.957668 TCGTCAATGATGCATGGGAG 58.042 50.000 2.46 0.00 0.00 4.30
1508 1918 9.553064 AGGTTTTGTATGATGACATTAGAGATC 57.447 33.333 0.00 0.00 37.87 2.75
1528 1938 7.336427 AGAGATCAGGATCAAGTTTTTCATGTC 59.664 37.037 11.55 0.00 40.22 3.06
1623 2033 3.134127 GGCCAAGGTGATGACGCC 61.134 66.667 0.00 0.00 46.05 5.68
1654 2064 5.222631 GTTTTTGTCATGTCCAACTCATCC 58.777 41.667 0.00 0.00 0.00 3.51
1786 2364 2.295909 CGGTTGTCCATGGTTCATTGTT 59.704 45.455 12.58 0.00 0.00 2.83
1796 2374 3.814625 TGGTTCATTGTTGTGCTACTGA 58.185 40.909 0.00 0.00 0.00 3.41
1874 2519 0.394762 GATGGGTCAGCATTGCTCCA 60.395 55.000 17.12 17.12 36.40 3.86
1906 2564 6.259550 AGGATTGCATTTTGTCAGTAACTC 57.740 37.500 0.00 0.00 0.00 3.01
1942 2614 7.095774 GCGACAGTAAACCTACAATACCATATG 60.096 40.741 0.00 0.00 0.00 1.78
1993 2677 5.007682 TCGAACCGATGGTAGATCATGATA 58.992 41.667 8.54 0.00 33.12 2.15
1999 2683 7.603651 ACCGATGGTAGATCATGATAAGTAAC 58.396 38.462 8.54 4.39 32.11 2.50
2002 2686 9.347934 CGATGGTAGATCATGATAAGTAACTTC 57.652 37.037 8.54 9.77 0.00 3.01
2056 2776 8.469309 AAGAAATGTTCTCTTGAGAAATTCCA 57.531 30.769 13.81 8.73 39.61 3.53
2066 2786 6.973843 TCTTGAGAAATTCCAGACATGTTTG 58.026 36.000 9.38 9.38 0.00 2.93
2077 2798 3.976942 CAGACATGTTTGCTTGCTAACAC 59.023 43.478 20.60 11.16 37.11 3.32
2125 2849 7.684937 ATCATTTCTTGTCTCTCCTTTTGAG 57.315 36.000 0.00 0.00 42.90 3.02
2126 2850 6.595682 TCATTTCTTGTCTCTCCTTTTGAGT 58.404 36.000 0.00 0.00 42.12 3.41
2127 2851 7.735917 TCATTTCTTGTCTCTCCTTTTGAGTA 58.264 34.615 0.00 0.00 42.12 2.59
2128 2852 8.210946 TCATTTCTTGTCTCTCCTTTTGAGTAA 58.789 33.333 0.00 0.00 42.12 2.24
2129 2853 9.007901 CATTTCTTGTCTCTCCTTTTGAGTAAT 57.992 33.333 0.00 0.00 42.12 1.89
2135 2859 9.621629 TTGTCTCTCCTTTTGAGTAATAAAACA 57.378 29.630 0.00 0.00 42.12 2.83
2136 2860 9.052759 TGTCTCTCCTTTTGAGTAATAAAACAC 57.947 33.333 0.00 0.00 42.12 3.32
2137 2861 8.504815 GTCTCTCCTTTTGAGTAATAAAACACC 58.495 37.037 0.00 0.00 42.12 4.16
2138 2862 7.664318 TCTCTCCTTTTGAGTAATAAAACACCC 59.336 37.037 0.00 0.00 42.12 4.61
2139 2863 7.523415 TCTCCTTTTGAGTAATAAAACACCCT 58.477 34.615 0.00 0.00 42.12 4.34
2140 2864 8.002459 TCTCCTTTTGAGTAATAAAACACCCTT 58.998 33.333 0.00 0.00 42.12 3.95
2141 2865 8.541899 TCCTTTTGAGTAATAAAACACCCTTT 57.458 30.769 0.00 0.00 0.00 3.11
2142 2866 9.643735 TCCTTTTGAGTAATAAAACACCCTTTA 57.356 29.630 0.00 0.00 0.00 1.85
2146 2870 9.504708 TTTGAGTAATAAAACACCCTTTATCGA 57.495 29.630 0.00 0.00 31.66 3.59
2147 2871 9.504708 TTGAGTAATAAAACACCCTTTATCGAA 57.495 29.630 0.00 0.00 31.66 3.71
2148 2872 9.504708 TGAGTAATAAAACACCCTTTATCGAAA 57.495 29.630 0.00 0.00 31.66 3.46
2153 2877 9.990360 AATAAAACACCCTTTATCGAAAAACAT 57.010 25.926 0.00 0.00 31.66 2.71
2154 2878 9.990360 ATAAAACACCCTTTATCGAAAAACATT 57.010 25.926 0.00 0.00 27.38 2.71
2155 2879 8.725405 AAAACACCCTTTATCGAAAAACATTT 57.275 26.923 0.00 0.00 0.00 2.32
2175 2914 7.999679 ACATTTTCTTGTCTCTGTGATTTTCA 58.000 30.769 0.00 0.00 0.00 2.69
2238 2977 4.422057 TCTTCCTGTAGTGGAACATGGTA 58.578 43.478 0.00 0.00 44.52 3.25
2239 2978 4.222145 TCTTCCTGTAGTGGAACATGGTAC 59.778 45.833 0.00 0.00 44.52 3.34
2278 3017 2.308866 ACATTACCAAGTTCCTCTGGGG 59.691 50.000 0.00 0.00 41.52 4.96
2342 3082 1.565390 TAGCAGCTGCCATGGAAGGT 61.565 55.000 34.39 19.44 43.38 3.50
2417 3179 6.591750 TTAGTATCATTAGGCTGGCTACTC 57.408 41.667 10.81 0.00 0.00 2.59
2441 3203 4.664150 TTCAATTTTCAAGACCACCCAC 57.336 40.909 0.00 0.00 0.00 4.61
2619 3404 0.179129 CCAGGAAAATGCGTGATGCC 60.179 55.000 0.00 0.00 45.60 4.40
2694 3486 4.020128 AGTGTTCCAGTGGTATCTCCTTTC 60.020 45.833 9.54 0.00 37.07 2.62
2950 3767 1.539124 GTCCCCAGAGGTGACCCTT 60.539 63.158 0.00 0.00 42.86 3.95
3003 3821 0.603065 GCCCAAATTTTGAGCGACCT 59.397 50.000 10.72 0.00 0.00 3.85
3014 3844 2.096248 TGAGCGACCTTGGTTTTGTTT 58.904 42.857 0.00 0.00 0.00 2.83
3077 3914 4.365514 TCCAAAGGTTATGACTGCAAGA 57.634 40.909 0.00 0.00 37.43 3.02
3146 3983 1.712401 TGCAAGATGGCAAATTTCGC 58.288 45.000 0.00 0.00 41.65 4.70
3224 4068 8.254508 AGAAGTTCCTTTCTATGTACATGTCTC 58.745 37.037 18.81 0.00 35.70 3.36
3363 4218 6.381801 ACTACACATTTCATTAACTTGCAGC 58.618 36.000 0.00 0.00 0.00 5.25
3456 4567 2.291209 TTTGGGATTCAGCTCTTGCA 57.709 45.000 0.00 0.00 42.74 4.08
3457 4568 1.830279 TTGGGATTCAGCTCTTGCAG 58.170 50.000 0.00 0.00 42.74 4.41
3500 4611 6.176975 TGACGAGCATAGGTTTGTTATTTG 57.823 37.500 0.00 0.00 0.00 2.32
3504 4615 6.128282 ACGAGCATAGGTTTGTTATTTGTCTG 60.128 38.462 0.00 0.00 0.00 3.51
3757 4882 5.245977 AGGTGTTATAAATTGTGCTTGCCTT 59.754 36.000 0.00 0.00 0.00 4.35
3758 4883 5.576774 GGTGTTATAAATTGTGCTTGCCTTC 59.423 40.000 0.00 0.00 0.00 3.46
3759 4884 5.286082 GTGTTATAAATTGTGCTTGCCTTCG 59.714 40.000 0.00 0.00 0.00 3.79
3760 4885 2.346099 TAAATTGTGCTTGCCTTCGC 57.654 45.000 0.00 0.00 0.00 4.70
3761 4886 0.319813 AAATTGTGCTTGCCTTCGCC 60.320 50.000 0.00 0.00 0.00 5.54
3762 4887 1.181098 AATTGTGCTTGCCTTCGCCT 61.181 50.000 0.00 0.00 0.00 5.52
3778 4907 1.332997 CGCCTGCCTGAATTTCTGATC 59.667 52.381 4.98 0.00 0.00 2.92
3942 5088 1.768275 TCCTTCAAGTGAGCAACAGGA 59.232 47.619 0.00 0.00 0.00 3.86
3947 5187 2.092968 TCAAGTGAGCAACAGGACAAGT 60.093 45.455 0.00 0.00 0.00 3.16
3951 5191 3.060602 GTGAGCAACAGGACAAGTAGAC 58.939 50.000 0.00 0.00 0.00 2.59
3952 5192 2.698274 TGAGCAACAGGACAAGTAGACA 59.302 45.455 0.00 0.00 0.00 3.41
4069 5339 1.327690 GGCTACCGATGGTGACCTCA 61.328 60.000 2.11 0.00 36.19 3.86
4131 5401 9.971922 AAGGTTTGATTTTACTCATCTTTTCTG 57.028 29.630 0.00 0.00 0.00 3.02
4213 5528 5.891451 ACTTGTTCTTGCAACTTAGTTTCC 58.109 37.500 0.00 0.00 0.00 3.13
4322 5655 2.045143 GGTCCGAGACCGAGACCT 60.045 66.667 7.23 0.00 43.14 3.85
4358 5691 2.950309 TCCTCGTTGCCTGTAGATACTC 59.050 50.000 0.00 0.00 0.00 2.59
4366 5699 1.546476 CCTGTAGATACTCCGATGCCC 59.454 57.143 0.00 0.00 0.00 5.36
4506 5840 9.906660 GAAACATACTCCATTCAACATTGTAAA 57.093 29.630 0.00 0.00 0.00 2.01
4537 5871 0.531657 CAGGACTGAGAGGCTCACAG 59.468 60.000 31.79 31.79 40.27 3.66
4538 5872 0.407528 AGGACTGAGAGGCTCACAGA 59.592 55.000 37.40 9.93 37.28 3.41
4539 5873 0.817013 GGACTGAGAGGCTCACAGAG 59.183 60.000 37.40 20.43 37.28 3.35
4540 5874 1.615651 GGACTGAGAGGCTCACAGAGA 60.616 57.143 37.40 8.92 37.28 3.10
4541 5875 1.472480 GACTGAGAGGCTCACAGAGAC 59.528 57.143 37.40 25.65 37.28 3.36
4542 5876 1.202989 ACTGAGAGGCTCACAGAGACA 60.203 52.381 37.40 16.05 40.81 3.41
4554 5888 1.897137 AGAGACACAGGTCACGCGA 60.897 57.895 15.93 0.00 46.80 5.87
4562 5896 1.956170 AGGTCACGCGAGCAACAAG 60.956 57.895 15.93 0.00 42.32 3.16
4563 5897 2.127609 GTCACGCGAGCAACAAGC 60.128 61.111 15.93 0.00 46.19 4.01
4573 5907 3.432517 GCAACAAGCCAACAACACA 57.567 47.368 0.00 0.00 37.23 3.72
4581 5915 0.308993 GCCAACAACACACTGAGAGC 59.691 55.000 0.00 0.00 0.00 4.09
4676 6014 3.937814 ACTTGTGAGTTGTGACAACAGA 58.062 40.909 27.89 12.54 37.67 3.41
4703 6043 8.995220 GGTGTATATTCAGCCGTTCAAATATAA 58.005 33.333 0.39 0.00 31.70 0.98
4715 6055 7.201548 GCCGTTCAAATATAAGAACCTTACGAA 60.202 37.037 12.16 0.00 40.69 3.85
4726 6066 6.844097 AGAACCTTACGAAGAGAAAGAGAT 57.156 37.500 0.00 0.00 0.00 2.75
4738 6078 6.244552 AGAGAAAGAGATAATGATGCACCA 57.755 37.500 0.00 0.00 0.00 4.17
4751 6091 3.330766 GCACCAGCAGTAGTCTACG 57.669 57.895 4.34 1.60 41.58 3.51
4752 6092 0.526662 GCACCAGCAGTAGTCTACGT 59.473 55.000 4.34 0.00 41.58 3.57
4782 6122 0.664761 GCACGAGCCATGCATGTAAT 59.335 50.000 24.58 10.35 42.88 1.89
4783 6123 1.598676 GCACGAGCCATGCATGTAATG 60.599 52.381 24.58 15.41 42.88 1.90
4784 6124 4.144940 GCACGAGCCATGCATGTAATGT 62.145 50.000 24.58 14.60 42.88 2.71
4805 6145 3.928727 AAACACACAGATGGCTGATTG 57.071 42.857 0.00 0.00 45.17 2.67
4810 6150 1.135199 CACAGATGGCTGATTGGTTGC 60.135 52.381 0.00 0.00 45.17 4.17
4827 6167 3.270877 GTTGCTCCTCAACGGTTCATAT 58.729 45.455 0.00 0.00 44.71 1.78
4834 6174 5.175859 TCCTCAACGGTTCATATTTCTGAC 58.824 41.667 0.00 0.00 0.00 3.51
4883 6223 3.994317 TGTCCTAGGGAGATGATGAACA 58.006 45.455 9.46 0.00 29.39 3.18
4884 6224 4.560739 TGTCCTAGGGAGATGATGAACAT 58.439 43.478 9.46 0.00 42.47 2.71
4889 6229 3.321039 AGGGAGATGATGAACATGCCTA 58.679 45.455 0.00 0.00 39.56 3.93
4890 6230 3.327172 AGGGAGATGATGAACATGCCTAG 59.673 47.826 0.00 0.00 39.56 3.02
4891 6231 3.072944 GGAGATGATGAACATGCCTAGC 58.927 50.000 0.00 0.00 39.56 3.42
4892 6232 3.244491 GGAGATGATGAACATGCCTAGCT 60.244 47.826 0.00 0.00 39.56 3.32
4897 6237 5.557576 TGATGAACATGCCTAGCTAATCT 57.442 39.130 0.00 0.00 0.00 2.40
4949 6305 5.505780 TGGATGTGGGTTAATTAGTCTTGG 58.494 41.667 0.00 0.00 0.00 3.61
4994 6350 2.425562 GCAGAGAGCTACTCCCTCC 58.574 63.158 8.89 0.00 45.96 4.30
4995 6351 0.396417 GCAGAGAGCTACTCCCTCCA 60.396 60.000 8.89 0.00 45.96 3.86
4996 6352 1.757405 GCAGAGAGCTACTCCCTCCAT 60.757 57.143 8.89 0.00 45.96 3.41
4998 6354 2.143602 AGAGAGCTACTCCCTCCATCT 58.856 52.381 8.89 0.00 45.96 2.90
4999 6355 3.073798 CAGAGAGCTACTCCCTCCATCTA 59.926 52.174 8.89 0.00 45.96 1.98
5000 6356 3.330701 AGAGAGCTACTCCCTCCATCTAG 59.669 52.174 8.89 0.00 45.96 2.43
5001 6357 3.060611 AGAGCTACTCCCTCCATCTAGT 58.939 50.000 0.00 0.00 0.00 2.57
5002 6358 3.153919 GAGCTACTCCCTCCATCTAGTG 58.846 54.545 0.00 0.00 0.00 2.74
5003 6359 2.516277 AGCTACTCCCTCCATCTAGTGT 59.484 50.000 0.00 0.00 0.00 3.55
5004 6360 3.052490 AGCTACTCCCTCCATCTAGTGTT 60.052 47.826 0.00 0.00 0.00 3.32
5005 6361 4.168283 AGCTACTCCCTCCATCTAGTGTTA 59.832 45.833 0.00 0.00 0.00 2.41
5006 6362 4.894114 GCTACTCCCTCCATCTAGTGTTAA 59.106 45.833 0.00 0.00 0.00 2.01
5007 6363 5.363005 GCTACTCCCTCCATCTAGTGTTAAA 59.637 44.000 0.00 0.00 0.00 1.52
5008 6364 6.127140 GCTACTCCCTCCATCTAGTGTTAAAA 60.127 42.308 0.00 0.00 0.00 1.52
5009 6365 6.697641 ACTCCCTCCATCTAGTGTTAAAAA 57.302 37.500 0.00 0.00 0.00 1.94
5010 6366 6.473758 ACTCCCTCCATCTAGTGTTAAAAAC 58.526 40.000 0.00 0.00 0.00 2.43
5011 6367 5.484715 TCCCTCCATCTAGTGTTAAAAACG 58.515 41.667 0.00 0.00 0.00 3.60
5012 6368 5.012354 TCCCTCCATCTAGTGTTAAAAACGT 59.988 40.000 0.00 0.00 0.00 3.99
5013 6369 5.704053 CCCTCCATCTAGTGTTAAAAACGTT 59.296 40.000 0.00 0.00 0.00 3.99
5014 6370 6.206048 CCCTCCATCTAGTGTTAAAAACGTTT 59.794 38.462 7.96 7.96 0.00 3.60
5015 6371 7.255346 CCCTCCATCTAGTGTTAAAAACGTTTT 60.255 37.037 20.26 20.26 0.00 2.43
5016 6372 8.132995 CCTCCATCTAGTGTTAAAAACGTTTTT 58.867 33.333 33.94 33.94 42.51 1.94
5034 6390 8.361592 ACGTTTTTATATTATGAGACGGAAGG 57.638 34.615 0.00 0.00 33.95 3.46
5035 6391 8.199449 ACGTTTTTATATTATGAGACGGAAGGA 58.801 33.333 0.00 0.00 33.95 3.36
5036 6392 8.700644 CGTTTTTATATTATGAGACGGAAGGAG 58.299 37.037 0.00 0.00 0.00 3.69
5037 6393 9.543783 GTTTTTATATTATGAGACGGAAGGAGT 57.456 33.333 0.00 0.00 0.00 3.85
5040 6396 8.929260 TTATATTATGAGACGGAAGGAGTACA 57.071 34.615 0.00 0.00 0.00 2.90
5041 6397 7.834881 ATATTATGAGACGGAAGGAGTACAA 57.165 36.000 0.00 0.00 0.00 2.41
5042 6398 5.988310 TTATGAGACGGAAGGAGTACAAA 57.012 39.130 0.00 0.00 0.00 2.83
5043 6399 3.655276 TGAGACGGAAGGAGTACAAAC 57.345 47.619 0.00 0.00 0.00 2.93
5044 6400 2.960384 TGAGACGGAAGGAGTACAAACA 59.040 45.455 0.00 0.00 0.00 2.83
5045 6401 3.243636 TGAGACGGAAGGAGTACAAACAC 60.244 47.826 0.00 0.00 0.00 3.32
5046 6402 2.696707 AGACGGAAGGAGTACAAACACA 59.303 45.455 0.00 0.00 0.00 3.72
5047 6403 2.798847 GACGGAAGGAGTACAAACACAC 59.201 50.000 0.00 0.00 0.00 3.82
5048 6404 1.790623 CGGAAGGAGTACAAACACACG 59.209 52.381 0.00 0.00 0.00 4.49
5049 6405 2.800629 CGGAAGGAGTACAAACACACGT 60.801 50.000 0.00 0.00 0.00 4.49
5050 6406 2.798847 GGAAGGAGTACAAACACACGTC 59.201 50.000 0.00 0.00 0.00 4.34
5051 6407 2.521105 AGGAGTACAAACACACGTCC 57.479 50.000 0.00 0.00 0.00 4.79
5052 6408 1.069668 AGGAGTACAAACACACGTCCC 59.930 52.381 0.00 0.00 0.00 4.46
5053 6409 1.505425 GAGTACAAACACACGTCCCC 58.495 55.000 0.00 0.00 0.00 4.81
5054 6410 0.831966 AGTACAAACACACGTCCCCA 59.168 50.000 0.00 0.00 0.00 4.96
5055 6411 1.418637 AGTACAAACACACGTCCCCAT 59.581 47.619 0.00 0.00 0.00 4.00
5056 6412 1.533731 GTACAAACACACGTCCCCATG 59.466 52.381 0.00 0.00 0.00 3.66
5057 6413 0.106918 ACAAACACACGTCCCCATGT 60.107 50.000 0.00 0.00 0.00 3.21
5058 6414 0.591170 CAAACACACGTCCCCATGTC 59.409 55.000 0.00 0.00 0.00 3.06
5059 6415 0.181587 AAACACACGTCCCCATGTCA 59.818 50.000 0.00 0.00 0.00 3.58
5060 6416 0.400213 AACACACGTCCCCATGTCAT 59.600 50.000 0.00 0.00 0.00 3.06
5061 6417 0.321564 ACACACGTCCCCATGTCATG 60.322 55.000 5.79 5.79 0.00 3.07
5139 6495 1.069935 GACTAGAATCGCCAGGCCC 59.930 63.158 5.63 0.00 0.00 5.80
5242 6602 5.238624 AGATGGATAGATGGTGGTGATTG 57.761 43.478 0.00 0.00 0.00 2.67
5267 6632 3.421394 ACCCTGGTGATGATCCTAAGA 57.579 47.619 0.00 0.00 0.00 2.10
5268 6633 3.312890 ACCCTGGTGATGATCCTAAGAG 58.687 50.000 0.00 0.00 0.00 2.85
5269 6634 2.038295 CCCTGGTGATGATCCTAAGAGC 59.962 54.545 0.00 0.00 0.00 4.09
5270 6635 2.702478 CCTGGTGATGATCCTAAGAGCA 59.298 50.000 0.00 0.00 43.83 4.26
5304 6669 4.726304 CCCCAGGGGCGCGTAAAA 62.726 66.667 13.35 0.00 35.35 1.52
5305 6670 2.439519 CCCAGGGGCGCGTAAAAT 60.440 61.111 8.43 0.00 0.00 1.82
5306 6671 2.049767 CCCAGGGGCGCGTAAAATT 61.050 57.895 8.43 0.00 0.00 1.82
5307 6672 0.748729 CCCAGGGGCGCGTAAAATTA 60.749 55.000 8.43 0.00 0.00 1.40
5308 6673 0.661020 CCAGGGGCGCGTAAAATTAG 59.339 55.000 8.43 0.00 0.00 1.73
5309 6674 0.028902 CAGGGGCGCGTAAAATTAGC 59.971 55.000 8.43 0.00 0.00 3.09
5310 6675 1.099295 AGGGGCGCGTAAAATTAGCC 61.099 55.000 8.43 0.00 46.51 3.93
5312 6677 1.357690 GGCGCGTAAAATTAGCCCC 59.642 57.895 8.43 0.00 41.81 5.80
5313 6678 1.099295 GGCGCGTAAAATTAGCCCCT 61.099 55.000 8.43 0.00 41.81 4.79
5314 6679 0.028902 GCGCGTAAAATTAGCCCCTG 59.971 55.000 8.43 0.00 0.00 4.45
5315 6680 0.661020 CGCGTAAAATTAGCCCCTGG 59.339 55.000 0.00 0.00 0.00 4.45
5316 6681 1.029681 GCGTAAAATTAGCCCCTGGG 58.970 55.000 5.50 5.50 38.57 4.45
5317 6682 1.409101 GCGTAAAATTAGCCCCTGGGA 60.409 52.381 16.20 0.00 37.50 4.37
5318 6683 2.572290 CGTAAAATTAGCCCCTGGGAG 58.428 52.381 16.20 5.50 37.50 4.30
5319 6684 2.307768 GTAAAATTAGCCCCTGGGAGC 58.692 52.381 16.20 15.98 37.50 4.70
5320 6685 0.395724 AAAATTAGCCCCTGGGAGCG 60.396 55.000 16.20 0.00 37.50 5.03
5321 6686 1.279025 AAATTAGCCCCTGGGAGCGA 61.279 55.000 16.20 9.59 37.50 4.93
5322 6687 1.700042 AATTAGCCCCTGGGAGCGAG 61.700 60.000 16.20 0.00 37.50 5.03
5334 6699 4.980805 AGCGAGCCGGCGTCAAAA 62.981 61.111 23.20 0.00 38.18 2.44
5335 6700 3.799755 GCGAGCCGGCGTCAAAAT 61.800 61.111 23.20 0.00 0.00 1.82
5336 6701 2.399611 CGAGCCGGCGTCAAAATC 59.600 61.111 23.20 10.39 0.00 2.17
5337 6702 2.387445 CGAGCCGGCGTCAAAATCA 61.387 57.895 23.20 0.00 0.00 2.57
5338 6703 1.425428 GAGCCGGCGTCAAAATCAG 59.575 57.895 23.20 0.00 0.00 2.90
5339 6704 2.202479 GCCGGCGTCAAAATCAGC 60.202 61.111 12.58 0.00 0.00 4.26
5340 6705 2.098298 CCGGCGTCAAAATCAGCG 59.902 61.111 6.01 0.00 0.00 5.18
5341 6706 2.677003 CCGGCGTCAAAATCAGCGT 61.677 57.895 6.01 0.00 0.00 5.07
5342 6707 1.509787 CGGCGTCAAAATCAGCGTG 60.510 57.895 0.00 0.00 0.00 5.34
5343 6708 1.154225 GGCGTCAAAATCAGCGTGG 60.154 57.895 0.00 0.00 0.00 4.94
5344 6709 1.154225 GCGTCAAAATCAGCGTGGG 60.154 57.895 0.00 0.00 0.00 4.61
5345 6710 1.501741 CGTCAAAATCAGCGTGGGG 59.498 57.895 0.00 0.00 0.00 4.96
5346 6711 1.883021 GTCAAAATCAGCGTGGGGG 59.117 57.895 0.00 0.00 0.00 5.40
5347 6712 1.976474 TCAAAATCAGCGTGGGGGC 60.976 57.895 0.00 0.00 0.00 5.80
5348 6713 3.061848 AAAATCAGCGTGGGGGCG 61.062 61.111 0.00 0.00 38.18 6.13
5349 6714 3.561120 AAAATCAGCGTGGGGGCGA 62.561 57.895 0.00 0.00 38.18 5.54
5350 6715 3.976701 AAATCAGCGTGGGGGCGAG 62.977 63.158 0.00 0.00 38.18 5.03
5397 6762 4.636435 CCCCCAGACGCGGTTGTT 62.636 66.667 12.47 0.00 0.00 2.83
5398 6763 2.593436 CCCCAGACGCGGTTGTTT 60.593 61.111 12.47 0.00 0.00 2.83
5399 6764 2.190841 CCCCAGACGCGGTTGTTTT 61.191 57.895 12.47 0.00 0.00 2.43
5400 6765 0.885596 CCCCAGACGCGGTTGTTTTA 60.886 55.000 12.47 0.00 0.00 1.52
5401 6766 0.945813 CCCAGACGCGGTTGTTTTAA 59.054 50.000 12.47 0.00 0.00 1.52
5402 6767 1.334243 CCCAGACGCGGTTGTTTTAAA 59.666 47.619 12.47 0.00 0.00 1.52
5403 6768 2.223525 CCCAGACGCGGTTGTTTTAAAA 60.224 45.455 12.47 0.00 0.00 1.52
5404 6769 3.436496 CCAGACGCGGTTGTTTTAAAAA 58.564 40.909 12.47 0.00 0.00 1.94
5428 6793 6.976636 AAAAAGAAATTCGGCAAAGTTTGA 57.023 29.167 19.82 0.00 0.00 2.69
5429 6794 7.552458 AAAAAGAAATTCGGCAAAGTTTGAT 57.448 28.000 19.82 0.74 0.00 2.57
5430 6795 8.655651 AAAAAGAAATTCGGCAAAGTTTGATA 57.344 26.923 19.82 0.50 0.00 2.15
5431 6796 8.655651 AAAAGAAATTCGGCAAAGTTTGATAA 57.344 26.923 19.82 9.52 0.00 1.75
5432 6797 8.655651 AAAGAAATTCGGCAAAGTTTGATAAA 57.344 26.923 19.82 9.19 0.00 1.40
5433 6798 8.831715 AAGAAATTCGGCAAAGTTTGATAAAT 57.168 26.923 19.82 10.93 0.00 1.40
5434 6799 8.831715 AGAAATTCGGCAAAGTTTGATAAATT 57.168 26.923 19.82 15.45 0.00 1.82
5435 6800 8.711457 AGAAATTCGGCAAAGTTTGATAAATTG 58.289 29.630 19.82 0.64 0.00 2.32
5436 6801 6.966435 ATTCGGCAAAGTTTGATAAATTGG 57.034 33.333 19.82 0.00 0.00 3.16
5437 6802 5.713792 TCGGCAAAGTTTGATAAATTGGA 57.286 34.783 19.82 1.41 0.00 3.53
5438 6803 5.465935 TCGGCAAAGTTTGATAAATTGGAC 58.534 37.500 19.82 0.00 0.00 4.02
5439 6804 5.010112 TCGGCAAAGTTTGATAAATTGGACA 59.990 36.000 19.82 0.00 0.00 4.02
5440 6805 5.694006 CGGCAAAGTTTGATAAATTGGACAA 59.306 36.000 19.82 0.00 0.00 3.18
5441 6806 6.201806 CGGCAAAGTTTGATAAATTGGACAAA 59.798 34.615 19.82 0.00 0.00 2.83
5442 6807 7.254590 CGGCAAAGTTTGATAAATTGGACAAAA 60.255 33.333 19.82 0.00 34.76 2.44
5443 6808 8.567104 GGCAAAGTTTGATAAATTGGACAAAAT 58.433 29.630 19.82 0.00 34.76 1.82
5450 6815 8.641499 TTGATAAATTGGACAAAATATTCGGC 57.359 30.769 0.00 0.00 0.00 5.54
5451 6816 8.006298 TGATAAATTGGACAAAATATTCGGCT 57.994 30.769 0.00 0.00 0.00 5.52
5452 6817 9.126151 TGATAAATTGGACAAAATATTCGGCTA 57.874 29.630 0.00 0.00 0.00 3.93
5453 6818 9.959749 GATAAATTGGACAAAATATTCGGCTAA 57.040 29.630 0.00 0.00 0.00 3.09
5454 6819 9.965824 ATAAATTGGACAAAATATTCGGCTAAG 57.034 29.630 0.00 0.00 0.00 2.18
5455 6820 7.404671 AATTGGACAAAATATTCGGCTAAGT 57.595 32.000 0.00 0.00 0.00 2.24
5456 6821 6.827586 TTGGACAAAATATTCGGCTAAGTT 57.172 33.333 0.00 0.00 0.00 2.66
5457 6822 6.431198 TGGACAAAATATTCGGCTAAGTTC 57.569 37.500 0.00 0.00 0.00 3.01
5458 6823 5.064198 TGGACAAAATATTCGGCTAAGTTCG 59.936 40.000 0.00 0.00 0.00 3.95
5459 6824 5.479716 ACAAAATATTCGGCTAAGTTCGG 57.520 39.130 0.00 0.00 0.00 4.30
5460 6825 4.201881 ACAAAATATTCGGCTAAGTTCGGC 60.202 41.667 0.00 0.00 0.00 5.54
5461 6826 2.902705 ATATTCGGCTAAGTTCGGCA 57.097 45.000 1.86 0.00 0.00 5.69
5462 6827 2.676632 TATTCGGCTAAGTTCGGCAA 57.323 45.000 1.86 0.00 0.00 4.52
5463 6828 1.816074 ATTCGGCTAAGTTCGGCAAA 58.184 45.000 1.86 0.00 0.00 3.68
5464 6829 0.869730 TTCGGCTAAGTTCGGCAAAC 59.130 50.000 1.86 0.00 38.21 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.002134 ATCAACCAGGTCAAGCCCG 60.002 57.895 0.00 0.00 38.26 6.13
39 40 4.280174 GGCACATGCATGAAGATTTCCTAT 59.720 41.667 32.75 2.76 44.36 2.57
41 42 2.429610 GGCACATGCATGAAGATTTCCT 59.570 45.455 32.75 4.13 44.36 3.36
46 47 0.260816 AGGGGCACATGCATGAAGAT 59.739 50.000 32.75 7.78 44.36 2.40
63 64 2.101582 CTCTGGGACGATGGTCTTTAGG 59.898 54.545 7.84 0.00 42.97 2.69
78 79 2.124403 GATGGCAGTGGCTCTGGG 60.124 66.667 18.53 0.00 43.78 4.45
80 81 1.748122 GGTGATGGCAGTGGCTCTG 60.748 63.158 18.53 12.07 46.12 3.35
81 82 1.569030 ATGGTGATGGCAGTGGCTCT 61.569 55.000 18.53 5.12 40.87 4.09
82 83 0.682209 AATGGTGATGGCAGTGGCTC 60.682 55.000 18.53 12.76 40.87 4.70
83 84 0.625316 TAATGGTGATGGCAGTGGCT 59.375 50.000 18.53 3.22 40.87 4.75
84 85 1.696063 ATAATGGTGATGGCAGTGGC 58.304 50.000 10.30 10.30 40.13 5.01
85 86 4.012374 GGATATAATGGTGATGGCAGTGG 58.988 47.826 0.00 0.00 0.00 4.00
86 87 4.914983 AGGATATAATGGTGATGGCAGTG 58.085 43.478 0.00 0.00 0.00 3.66
87 88 5.073554 TCAAGGATATAATGGTGATGGCAGT 59.926 40.000 0.00 0.00 0.00 4.40
102 103 5.167121 CGCTTCAGATCGATTCAAGGATAT 58.833 41.667 0.00 0.00 0.00 1.63
105 106 2.814269 CGCTTCAGATCGATTCAAGGA 58.186 47.619 0.00 0.00 0.00 3.36
124 125 2.452813 CGAGATTTGGTGTCGGGCG 61.453 63.158 0.00 0.00 39.71 6.13
163 164 0.251354 GGGGACGAGGTTAGGGTTTC 59.749 60.000 0.00 0.00 0.00 2.78
167 168 0.252197 CTTTGGGGACGAGGTTAGGG 59.748 60.000 0.00 0.00 0.00 3.53
170 171 1.203212 TCTCCTTTGGGGACGAGGTTA 60.203 52.381 0.00 0.00 39.58 2.85
177 178 1.141858 CCTGCTATCTCCTTTGGGGAC 59.858 57.143 0.00 0.00 39.58 4.46
178 179 1.009552 TCCTGCTATCTCCTTTGGGGA 59.990 52.381 0.00 0.00 42.77 4.81
186 187 2.094442 GGCGTAGATTCCTGCTATCTCC 60.094 54.545 0.00 0.00 34.35 3.71
187 188 2.414824 CGGCGTAGATTCCTGCTATCTC 60.415 54.545 0.00 0.00 34.35 2.75
188 189 1.542030 CGGCGTAGATTCCTGCTATCT 59.458 52.381 0.00 0.00 36.39 1.98
189 190 1.402984 CCGGCGTAGATTCCTGCTATC 60.403 57.143 6.01 0.00 0.00 2.08
217 218 2.292292 TCGTTCACTGTGATGAAGTCGA 59.708 45.455 11.86 11.55 39.25 4.20
228 229 2.352814 CCTCCTCGAATTCGTTCACTGT 60.353 50.000 25.93 0.00 40.80 3.55
231 232 1.067071 ACCCTCCTCGAATTCGTTCAC 60.067 52.381 25.93 0.00 40.80 3.18
242 243 2.685380 AGGCTCCAACCCTCCTCG 60.685 66.667 0.00 0.00 0.00 4.63
519 520 0.035056 CATCCCCTCCAAGCTTCGTT 60.035 55.000 0.00 0.00 0.00 3.85
520 521 0.909610 TCATCCCCTCCAAGCTTCGT 60.910 55.000 0.00 0.00 0.00 3.85
540 541 0.461516 GTTCTAGGCGGTTAGGGCAC 60.462 60.000 0.00 0.00 34.40 5.01
543 544 1.440476 CCGTTCTAGGCGGTTAGGG 59.560 63.158 15.43 0.00 43.84 3.53
551 552 1.415200 ATCCCTCTTCCGTTCTAGGC 58.585 55.000 0.00 0.00 0.00 3.93
552 553 4.076394 CTCTATCCCTCTTCCGTTCTAGG 58.924 52.174 0.00 0.00 0.00 3.02
554 555 5.384145 TTCTCTATCCCTCTTCCGTTCTA 57.616 43.478 0.00 0.00 0.00 2.10
555 556 3.955524 TCTCTATCCCTCTTCCGTTCT 57.044 47.619 0.00 0.00 0.00 3.01
571 572 9.878599 CTTGTTTAATATTGTTCGTGTTTCTCT 57.121 29.630 0.00 0.00 0.00 3.10
579 580 9.325150 CGATCAAACTTGTTTAATATTGTTCGT 57.675 29.630 0.00 0.00 36.25 3.85
581 582 9.834628 TCCGATCAAACTTGTTTAATATTGTTC 57.165 29.630 0.00 0.00 0.00 3.18
637 638 8.236585 TGGTGTGATATTATTCCCTTCATTTG 57.763 34.615 0.00 0.00 0.00 2.32
649 650 5.072600 ACCGGGTGTAATGGTGTGATATTAT 59.927 40.000 6.32 0.00 33.91 1.28
661 664 2.439519 GGGCCACCGGGTGTAATG 60.440 66.667 24.70 11.18 36.17 1.90
692 695 1.153107 GGTACCAACCATACGGCCC 60.153 63.158 7.15 0.00 45.98 5.80
791 795 3.959991 GAAGCGGTGGGGTCTGAGC 62.960 68.421 0.00 0.00 0.00 4.26
793 797 3.319198 GGAAGCGGTGGGGTCTGA 61.319 66.667 0.00 0.00 0.00 3.27
949 954 4.285863 TGGTTTGAAATGGAGTTGAAGGT 58.714 39.130 0.00 0.00 0.00 3.50
1080 1111 4.675161 TTCCCATTGGCAGCGGCA 62.675 61.111 11.88 5.90 43.71 5.69
1163 1203 1.452651 TAAGGACGATCGGAGGCGT 60.453 57.895 20.98 8.19 40.96 5.68
1178 1218 2.438434 CAAGGGGCGGCTGGTAAG 60.438 66.667 9.56 0.00 0.00 2.34
1472 1876 4.588899 TCATACAAAACCTGACTCCCATG 58.411 43.478 0.00 0.00 0.00 3.66
1476 1880 5.245531 TGTCATCATACAAAACCTGACTCC 58.754 41.667 0.00 0.00 35.27 3.85
1478 1882 8.321353 TCTAATGTCATCATACAAAACCTGACT 58.679 33.333 0.00 0.00 35.27 3.41
1479 1883 8.492673 TCTAATGTCATCATACAAAACCTGAC 57.507 34.615 0.00 0.00 33.49 3.51
1508 1918 4.161333 GCGACATGAAAAACTTGATCCTG 58.839 43.478 0.00 0.00 0.00 3.86
1623 2033 1.871039 ACATGACAAAAACCGGAGTCG 59.129 47.619 9.46 0.00 33.83 4.18
1806 2384 2.738846 CTGAACTTGTTCTCACCCATCG 59.261 50.000 13.65 0.00 0.00 3.84
1874 2519 9.976511 CTGACAAAATGCAATCCTATGATTATT 57.023 29.630 0.00 0.00 39.20 1.40
1906 2564 2.068837 TTACTGTCGCCCGTAACTTG 57.931 50.000 0.00 0.00 0.00 3.16
1942 2614 9.950680 TTGACTACATGATTTCTTTTCTCAAAC 57.049 29.630 0.00 0.00 0.00 2.93
2056 2776 3.004734 GGTGTTAGCAAGCAAACATGTCT 59.995 43.478 0.00 0.00 37.87 3.41
2066 2786 1.602920 GGCAACAAGGTGTTAGCAAGC 60.603 52.381 13.58 5.37 38.77 4.01
2116 2840 8.541899 AAAGGGTGTTTTATTACTCAAAAGGA 57.458 30.769 0.00 0.00 0.00 3.36
2120 2844 9.504708 TCGATAAAGGGTGTTTTATTACTCAAA 57.495 29.630 0.00 0.00 34.31 2.69
2121 2845 9.504708 TTCGATAAAGGGTGTTTTATTACTCAA 57.495 29.630 0.00 0.00 34.31 3.02
2122 2846 9.504708 TTTCGATAAAGGGTGTTTTATTACTCA 57.495 29.630 0.00 0.00 34.31 3.41
2127 2851 9.990360 ATGTTTTTCGATAAAGGGTGTTTTATT 57.010 25.926 0.98 0.00 34.31 1.40
2128 2852 9.990360 AATGTTTTTCGATAAAGGGTGTTTTAT 57.010 25.926 0.98 0.00 36.28 1.40
2129 2853 9.819267 AAATGTTTTTCGATAAAGGGTGTTTTA 57.181 25.926 0.98 0.00 0.00 1.52
2130 2854 8.725405 AAATGTTTTTCGATAAAGGGTGTTTT 57.275 26.923 0.98 0.00 0.00 2.43
2131 2855 8.725405 AAAATGTTTTTCGATAAAGGGTGTTT 57.275 26.923 0.98 0.00 0.00 2.83
2132 2856 8.201464 AGAAAATGTTTTTCGATAAAGGGTGTT 58.799 29.630 0.98 0.00 33.86 3.32
2133 2857 7.722363 AGAAAATGTTTTTCGATAAAGGGTGT 58.278 30.769 0.98 0.00 33.86 4.16
2134 2858 8.487176 CAAGAAAATGTTTTTCGATAAAGGGTG 58.513 33.333 0.98 0.00 33.86 4.61
2135 2859 8.201464 ACAAGAAAATGTTTTTCGATAAAGGGT 58.799 29.630 0.98 0.00 33.86 4.34
2136 2860 8.587952 ACAAGAAAATGTTTTTCGATAAAGGG 57.412 30.769 0.98 0.00 33.86 3.95
2137 2861 9.463443 AGACAAGAAAATGTTTTTCGATAAAGG 57.537 29.630 0.98 0.00 32.57 3.11
2140 2864 9.663904 CAGAGACAAGAAAATGTTTTTCGATAA 57.336 29.630 6.98 0.00 32.57 1.75
2141 2865 8.836413 ACAGAGACAAGAAAATGTTTTTCGATA 58.164 29.630 6.98 0.00 32.57 2.92
2142 2866 7.645340 CACAGAGACAAGAAAATGTTTTTCGAT 59.355 33.333 6.98 0.00 32.57 3.59
2143 2867 6.966632 CACAGAGACAAGAAAATGTTTTTCGA 59.033 34.615 6.98 0.00 32.57 3.71
2144 2868 6.966632 TCACAGAGACAAGAAAATGTTTTTCG 59.033 34.615 6.98 0.00 32.57 3.46
2145 2869 8.862550 ATCACAGAGACAAGAAAATGTTTTTC 57.137 30.769 4.88 4.88 32.57 2.29
2146 2870 9.657419 AAATCACAGAGACAAGAAAATGTTTTT 57.343 25.926 0.00 0.00 32.57 1.94
2147 2871 9.657419 AAAATCACAGAGACAAGAAAATGTTTT 57.343 25.926 0.00 0.00 32.57 2.43
2148 2872 9.305925 GAAAATCACAGAGACAAGAAAATGTTT 57.694 29.630 0.00 0.00 32.57 2.83
2149 2873 8.469200 TGAAAATCACAGAGACAAGAAAATGTT 58.531 29.630 0.00 0.00 32.57 2.71
2150 2874 7.999679 TGAAAATCACAGAGACAAGAAAATGT 58.000 30.769 0.00 0.00 35.90 2.71
2151 2875 9.472361 AATGAAAATCACAGAGACAAGAAAATG 57.528 29.630 0.00 0.00 0.00 2.32
2153 2877 9.874205 AAAATGAAAATCACAGAGACAAGAAAA 57.126 25.926 0.00 0.00 0.00 2.29
2175 2914 4.518970 ACATGAAAGCCGTGTGACTAAAAT 59.481 37.500 0.00 0.00 43.04 1.82
2238 2977 0.473755 TCCAACATGGCAGTGACTGT 59.526 50.000 14.82 0.00 37.47 3.55
2239 2978 0.877071 GTCCAACATGGCAGTGACTG 59.123 55.000 8.52 8.52 37.47 3.51
2278 3017 3.916761 TGCTCCATTCTTGAAATTGCAC 58.083 40.909 0.00 0.00 0.00 4.57
2342 3082 2.203280 CCCCACTGCCGTTCAACA 60.203 61.111 0.00 0.00 0.00 3.33
2401 3144 4.454678 TGAAATGAGTAGCCAGCCTAATG 58.545 43.478 0.00 0.00 0.00 1.90
2408 3151 7.540055 GTCTTGAAAATTGAAATGAGTAGCCAG 59.460 37.037 0.00 0.00 0.00 4.85
2417 3179 5.466393 GTGGGTGGTCTTGAAAATTGAAATG 59.534 40.000 0.00 0.00 0.00 2.32
2441 3203 4.316645 AGAGATCTGAATGGAATGCATCG 58.683 43.478 0.00 0.00 25.84 3.84
2487 3252 3.409570 GACCTGAAGTAAGGACCCAAAC 58.590 50.000 0.00 0.00 40.02 2.93
2694 3486 1.864435 GCCGCCACAGTTACTAGATCG 60.864 57.143 0.00 0.00 0.00 3.69
2989 3807 4.119136 CAAAACCAAGGTCGCTCAAAATT 58.881 39.130 0.00 0.00 0.00 1.82
3039 3876 8.753497 ACCTTTGGAAAGATTACAGGATATTC 57.247 34.615 0.47 0.00 38.28 1.75
3045 3882 7.611855 AGTCATAACCTTTGGAAAGATTACAGG 59.388 37.037 0.47 0.00 38.28 4.00
3050 3887 5.774690 TGCAGTCATAACCTTTGGAAAGATT 59.225 36.000 0.47 0.00 38.28 2.40
3146 3983 5.106987 GCTTTTGTTTGCAACAGGAATATGG 60.107 40.000 0.00 0.00 43.27 2.74
3224 4068 8.792830 TGTCCTCCTATTCAAAGATTTAACTG 57.207 34.615 0.00 0.00 0.00 3.16
3363 4218 4.625742 ACCTAACGAAAACACGATGAGATG 59.374 41.667 0.00 0.00 37.03 2.90
3500 4611 5.362556 TGAAAGAGCATAAGCAAACAGAC 57.637 39.130 0.00 0.00 45.49 3.51
3504 4615 7.880059 AAGAAATGAAAGAGCATAAGCAAAC 57.120 32.000 0.00 0.00 45.49 2.93
3757 4882 0.324614 TCAGAAATTCAGGCAGGCGA 59.675 50.000 0.00 0.00 0.00 5.54
3758 4883 1.332997 GATCAGAAATTCAGGCAGGCG 59.667 52.381 0.00 0.00 0.00 5.52
3759 4884 2.372264 TGATCAGAAATTCAGGCAGGC 58.628 47.619 0.00 0.00 0.00 4.85
3760 4885 3.318275 CCATGATCAGAAATTCAGGCAGG 59.682 47.826 0.09 0.00 0.00 4.85
3761 4886 3.952323 ACCATGATCAGAAATTCAGGCAG 59.048 43.478 0.09 0.00 0.00 4.85
3762 4887 3.949754 GACCATGATCAGAAATTCAGGCA 59.050 43.478 0.09 0.00 0.00 4.75
3778 4907 1.004044 ACTGCAGAAAGGAGGACCATG 59.996 52.381 23.35 0.00 40.51 3.66
3867 4999 7.386851 TCAACCTCTTACCAGAAGATTTACAG 58.613 38.462 0.00 0.00 0.00 2.74
3951 5191 8.850156 CCACAAATCCTACTTATAAATTCCCTG 58.150 37.037 0.00 0.00 0.00 4.45
3952 5192 8.787818 TCCACAAATCCTACTTATAAATTCCCT 58.212 33.333 0.00 0.00 0.00 4.20
4069 5339 0.808453 GCATGCTCAATTGCCGCAAT 60.808 50.000 20.81 13.00 37.20 3.56
4131 5401 4.333926 GGATGCAGATCAAGTTACTGTTCC 59.666 45.833 0.00 0.00 34.60 3.62
4213 5528 8.415192 TGTAAGCCTCACATTAAATTACTACG 57.585 34.615 0.00 0.00 0.00 3.51
4269 5601 2.038295 AGCCTCAGAACCTGAAACAGAG 59.962 50.000 0.00 0.00 40.18 3.35
4270 5602 2.050144 AGCCTCAGAACCTGAAACAGA 58.950 47.619 0.00 0.00 40.18 3.41
4506 5840 3.324846 TCTCAGTCCTGTGTAAGTGCATT 59.675 43.478 0.00 0.00 0.00 3.56
4537 5871 1.442857 CTCGCGTGACCTGTGTCTC 60.443 63.158 5.77 0.00 42.28 3.36
4538 5872 2.645567 CTCGCGTGACCTGTGTCT 59.354 61.111 5.77 0.00 42.28 3.41
4539 5873 3.106407 GCTCGCGTGACCTGTGTC 61.106 66.667 13.13 0.00 42.12 3.67
4540 5874 3.439513 TTGCTCGCGTGACCTGTGT 62.440 57.895 13.13 0.00 0.00 3.72
4541 5875 2.661537 TTGCTCGCGTGACCTGTG 60.662 61.111 13.13 0.00 0.00 3.66
4542 5876 2.661866 GTTGCTCGCGTGACCTGT 60.662 61.111 13.13 0.00 0.00 4.00
4554 5888 0.894141 TGTGTTGTTGGCTTGTTGCT 59.106 45.000 0.00 0.00 42.39 3.91
4562 5896 0.308993 GCTCTCAGTGTGTTGTTGGC 59.691 55.000 0.00 0.00 0.00 4.52
4563 5897 1.959042 AGCTCTCAGTGTGTTGTTGG 58.041 50.000 0.00 0.00 0.00 3.77
4565 5899 3.758554 ACAAAAGCTCTCAGTGTGTTGTT 59.241 39.130 0.00 0.00 0.00 2.83
4566 5900 3.347216 ACAAAAGCTCTCAGTGTGTTGT 58.653 40.909 0.00 0.00 0.00 3.32
4568 5902 5.391312 AAAACAAAAGCTCTCAGTGTGTT 57.609 34.783 0.00 0.00 0.00 3.32
4569 5903 5.183904 AGAAAAACAAAAGCTCTCAGTGTGT 59.816 36.000 0.00 0.00 0.00 3.72
4570 5904 5.644644 AGAAAAACAAAAGCTCTCAGTGTG 58.355 37.500 0.00 0.00 0.00 3.82
4572 5906 5.745769 GGAAGAAAAACAAAAGCTCTCAGTG 59.254 40.000 0.00 0.00 0.00 3.66
4573 5907 5.449177 CGGAAGAAAAACAAAAGCTCTCAGT 60.449 40.000 0.00 0.00 0.00 3.41
4581 5915 3.812156 ACCCCGGAAGAAAAACAAAAG 57.188 42.857 0.73 0.00 0.00 2.27
4676 6014 4.481368 TTGAACGGCTGAATATACACCT 57.519 40.909 0.00 0.00 0.00 4.00
4703 6043 6.844097 ATCTCTTTCTCTTCGTAAGGTTCT 57.156 37.500 0.00 0.00 38.47 3.01
4715 6055 6.244552 TGGTGCATCATTATCTCTTTCTCT 57.755 37.500 0.00 0.00 0.00 3.10
4720 6060 4.160642 TGCTGGTGCATCATTATCTCTT 57.839 40.909 0.00 0.00 45.31 2.85
4738 6078 7.927629 GCCTAGATATATACGTAGACTACTGCT 59.072 40.741 10.82 0.00 0.00 4.24
4743 6083 8.000780 TCGTGCCTAGATATATACGTAGACTA 57.999 38.462 0.08 0.00 33.68 2.59
4748 6088 5.980698 GCTCGTGCCTAGATATATACGTA 57.019 43.478 0.00 0.00 33.68 3.57
4749 6089 4.879104 GCTCGTGCCTAGATATATACGT 57.121 45.455 0.00 0.00 33.68 3.57
4782 6122 3.483808 TCAGCCATCTGTGTGTTTACA 57.516 42.857 0.00 0.00 41.10 2.41
4783 6123 4.379813 CCAATCAGCCATCTGTGTGTTTAC 60.380 45.833 0.00 0.00 41.10 2.01
4784 6124 3.758023 CCAATCAGCCATCTGTGTGTTTA 59.242 43.478 0.00 0.00 41.10 2.01
4794 6134 0.743097 GGAGCAACCAATCAGCCATC 59.257 55.000 0.00 0.00 38.79 3.51
4810 6150 5.292101 GTCAGAAATATGAACCGTTGAGGAG 59.708 44.000 0.00 0.00 45.00 3.69
4819 6159 5.545658 TTTGCGAGTCAGAAATATGAACC 57.454 39.130 0.00 0.00 0.00 3.62
4823 6163 5.861491 GCAATTTGCGAGTCAGAAATATG 57.139 39.130 5.49 0.00 31.71 1.78
4883 6223 3.137176 TGCTTGGAAGATTAGCTAGGCAT 59.863 43.478 0.00 0.00 35.93 4.40
4884 6224 2.505407 TGCTTGGAAGATTAGCTAGGCA 59.495 45.455 0.00 0.00 35.93 4.75
4889 6229 3.077484 TGCTTGCTTGGAAGATTAGCT 57.923 42.857 6.07 0.00 35.93 3.32
4890 6230 3.767278 CTTGCTTGCTTGGAAGATTAGC 58.233 45.455 6.07 0.00 37.54 3.09
4891 6231 3.192001 TGCTTGCTTGCTTGGAAGATTAG 59.808 43.478 12.98 1.26 37.54 1.73
4892 6232 3.156293 TGCTTGCTTGCTTGGAAGATTA 58.844 40.909 12.98 0.00 37.54 1.75
4897 6237 1.401761 TCTTGCTTGCTTGCTTGGAA 58.598 45.000 3.47 0.00 0.00 3.53
4920 6276 7.728532 AGACTAATTAACCCACATCCAAACTTT 59.271 33.333 0.00 0.00 0.00 2.66
4949 6305 1.689273 CCATCTGGCTACCTCTGTACC 59.311 57.143 0.00 0.00 0.00 3.34
4988 6344 5.012354 ACGTTTTTAACACTAGATGGAGGGA 59.988 40.000 0.00 0.00 0.00 4.20
4989 6345 5.243207 ACGTTTTTAACACTAGATGGAGGG 58.757 41.667 0.00 0.00 0.00 4.30
4990 6346 6.796705 AACGTTTTTAACACTAGATGGAGG 57.203 37.500 0.00 0.00 0.00 4.30
5008 6364 8.823818 CCTTCCGTCTCATAATATAAAAACGTT 58.176 33.333 0.00 0.00 0.00 3.99
5009 6365 8.199449 TCCTTCCGTCTCATAATATAAAAACGT 58.801 33.333 0.00 0.00 0.00 3.99
5010 6366 8.583810 TCCTTCCGTCTCATAATATAAAAACG 57.416 34.615 0.00 0.00 0.00 3.60
5011 6367 9.543783 ACTCCTTCCGTCTCATAATATAAAAAC 57.456 33.333 0.00 0.00 0.00 2.43
5014 6370 9.358406 TGTACTCCTTCCGTCTCATAATATAAA 57.642 33.333 0.00 0.00 0.00 1.40
5015 6371 8.929260 TGTACTCCTTCCGTCTCATAATATAA 57.071 34.615 0.00 0.00 0.00 0.98
5016 6372 8.929260 TTGTACTCCTTCCGTCTCATAATATA 57.071 34.615 0.00 0.00 0.00 0.86
5017 6373 7.834881 TTGTACTCCTTCCGTCTCATAATAT 57.165 36.000 0.00 0.00 0.00 1.28
5018 6374 7.123098 TGTTTGTACTCCTTCCGTCTCATAATA 59.877 37.037 0.00 0.00 0.00 0.98
5019 6375 6.070995 TGTTTGTACTCCTTCCGTCTCATAAT 60.071 38.462 0.00 0.00 0.00 1.28
5020 6376 5.244402 TGTTTGTACTCCTTCCGTCTCATAA 59.756 40.000 0.00 0.00 0.00 1.90
5021 6377 4.768448 TGTTTGTACTCCTTCCGTCTCATA 59.232 41.667 0.00 0.00 0.00 2.15
5022 6378 3.576982 TGTTTGTACTCCTTCCGTCTCAT 59.423 43.478 0.00 0.00 0.00 2.90
5023 6379 2.960384 TGTTTGTACTCCTTCCGTCTCA 59.040 45.455 0.00 0.00 0.00 3.27
5024 6380 3.243636 TGTGTTTGTACTCCTTCCGTCTC 60.244 47.826 0.00 0.00 0.00 3.36
5025 6381 2.696707 TGTGTTTGTACTCCTTCCGTCT 59.303 45.455 0.00 0.00 0.00 4.18
5026 6382 2.798847 GTGTGTTTGTACTCCTTCCGTC 59.201 50.000 0.00 0.00 0.00 4.79
5027 6383 2.800629 CGTGTGTTTGTACTCCTTCCGT 60.801 50.000 0.00 0.00 0.00 4.69
5028 6384 1.790623 CGTGTGTTTGTACTCCTTCCG 59.209 52.381 0.00 0.00 0.00 4.30
5029 6385 2.798847 GACGTGTGTTTGTACTCCTTCC 59.201 50.000 0.00 0.00 0.00 3.46
5030 6386 2.798847 GGACGTGTGTTTGTACTCCTTC 59.201 50.000 0.00 0.00 0.00 3.46
5031 6387 2.484241 GGGACGTGTGTTTGTACTCCTT 60.484 50.000 0.00 0.00 0.00 3.36
5032 6388 1.069668 GGGACGTGTGTTTGTACTCCT 59.930 52.381 0.00 0.00 0.00 3.69
5033 6389 1.505425 GGGACGTGTGTTTGTACTCC 58.495 55.000 0.00 0.00 0.00 3.85
5034 6390 1.202557 TGGGGACGTGTGTTTGTACTC 60.203 52.381 0.00 0.00 0.00 2.59
5035 6391 0.831966 TGGGGACGTGTGTTTGTACT 59.168 50.000 0.00 0.00 0.00 2.73
5036 6392 1.533731 CATGGGGACGTGTGTTTGTAC 59.466 52.381 0.00 0.00 42.59 2.90
5037 6393 1.885560 CATGGGGACGTGTGTTTGTA 58.114 50.000 0.00 0.00 42.59 2.41
5038 6394 2.714259 CATGGGGACGTGTGTTTGT 58.286 52.632 0.00 0.00 42.59 2.83
5046 6402 0.911769 ACATCATGACATGGGGACGT 59.088 50.000 15.37 0.00 0.00 4.34
5047 6403 1.134431 TGACATCATGACATGGGGACG 60.134 52.381 15.37 2.90 0.00 4.79
5048 6404 2.715749 TGACATCATGACATGGGGAC 57.284 50.000 15.37 8.69 0.00 4.46
5049 6405 3.558033 CATTGACATCATGACATGGGGA 58.442 45.455 15.37 0.00 0.00 4.81
5050 6406 2.626266 CCATTGACATCATGACATGGGG 59.374 50.000 15.37 10.08 0.00 4.96
5051 6407 2.626266 CCCATTGACATCATGACATGGG 59.374 50.000 15.37 17.80 36.02 4.00
5052 6408 3.558033 TCCCATTGACATCATGACATGG 58.442 45.455 15.37 5.24 0.00 3.66
5053 6409 4.217767 GGATCCCATTGACATCATGACATG 59.782 45.833 9.28 9.28 0.00 3.21
5054 6410 4.105858 AGGATCCCATTGACATCATGACAT 59.894 41.667 8.55 0.00 0.00 3.06
5055 6411 3.460712 AGGATCCCATTGACATCATGACA 59.539 43.478 8.55 0.00 0.00 3.58
5056 6412 3.819337 CAGGATCCCATTGACATCATGAC 59.181 47.826 8.55 0.00 31.42 3.06
5057 6413 3.749632 GCAGGATCCCATTGACATCATGA 60.750 47.826 8.55 0.00 31.42 3.07
5058 6414 2.557056 GCAGGATCCCATTGACATCATG 59.443 50.000 8.55 0.00 32.66 3.07
5059 6415 2.176148 TGCAGGATCCCATTGACATCAT 59.824 45.455 8.55 0.00 0.00 2.45
5060 6416 1.565288 TGCAGGATCCCATTGACATCA 59.435 47.619 8.55 0.00 0.00 3.07
5061 6417 2.228059 CTGCAGGATCCCATTGACATC 58.772 52.381 8.55 0.00 0.00 3.06
5171 6527 8.472413 AGTATTGAATTTGTATGCTGAATTGCT 58.528 29.630 0.00 0.00 0.00 3.91
5217 6573 7.900784 TCAATCACCACCATCTATCCATCTATA 59.099 37.037 0.00 0.00 0.00 1.31
5221 6581 4.999950 GTCAATCACCACCATCTATCCATC 59.000 45.833 0.00 0.00 0.00 3.51
5224 6584 3.181465 ACGTCAATCACCACCATCTATCC 60.181 47.826 0.00 0.00 0.00 2.59
5242 6602 1.068741 GGATCATCACCAGGGTACGTC 59.931 57.143 0.00 0.00 0.00 4.34
5288 6653 0.748729 TAATTTTACGCGCCCCTGGG 60.749 55.000 5.73 5.50 38.57 4.45
5289 6654 0.661020 CTAATTTTACGCGCCCCTGG 59.339 55.000 5.73 0.00 0.00 4.45
5290 6655 0.028902 GCTAATTTTACGCGCCCCTG 59.971 55.000 5.73 0.00 0.00 4.45
5291 6656 1.099295 GGCTAATTTTACGCGCCCCT 61.099 55.000 5.73 0.00 34.75 4.79
5292 6657 1.357690 GGCTAATTTTACGCGCCCC 59.642 57.895 5.73 0.00 34.75 5.80
5294 6659 1.357690 GGGGCTAATTTTACGCGCC 59.642 57.895 5.73 0.00 46.99 6.53
5295 6660 0.028902 CAGGGGCTAATTTTACGCGC 59.971 55.000 5.73 0.00 36.08 6.86
5296 6661 0.661020 CCAGGGGCTAATTTTACGCG 59.339 55.000 3.53 3.53 0.00 6.01
5297 6662 1.029681 CCCAGGGGCTAATTTTACGC 58.970 55.000 0.00 0.00 0.00 4.42
5298 6663 2.572290 CTCCCAGGGGCTAATTTTACG 58.428 52.381 5.33 0.00 34.68 3.18
5299 6664 2.307768 GCTCCCAGGGGCTAATTTTAC 58.692 52.381 5.33 0.00 34.68 2.01
5300 6665 1.133915 CGCTCCCAGGGGCTAATTTTA 60.134 52.381 5.33 0.00 34.68 1.52
5301 6666 0.395724 CGCTCCCAGGGGCTAATTTT 60.396 55.000 5.33 0.00 34.68 1.82
5302 6667 1.227383 CGCTCCCAGGGGCTAATTT 59.773 57.895 5.33 0.00 34.68 1.82
5303 6668 1.692749 TCGCTCCCAGGGGCTAATT 60.693 57.895 5.33 0.00 34.68 1.40
5304 6669 2.040884 TCGCTCCCAGGGGCTAAT 60.041 61.111 5.33 0.00 34.68 1.73
5305 6670 2.764128 CTCGCTCCCAGGGGCTAA 60.764 66.667 5.33 0.00 34.68 3.09
5317 6682 4.980805 TTTTGACGCCGGCTCGCT 62.981 61.111 26.68 3.32 0.00 4.93
5318 6683 3.718480 GATTTTGACGCCGGCTCGC 62.718 63.158 26.68 13.93 0.00 5.03
5319 6684 2.296692 CTGATTTTGACGCCGGCTCG 62.297 60.000 26.68 12.89 0.00 5.03
5320 6685 1.425428 CTGATTTTGACGCCGGCTC 59.575 57.895 26.68 20.55 0.00 4.70
5321 6686 2.690778 GCTGATTTTGACGCCGGCT 61.691 57.895 26.68 11.91 0.00 5.52
5322 6687 2.202479 GCTGATTTTGACGCCGGC 60.202 61.111 19.07 19.07 0.00 6.13
5323 6688 2.098298 CGCTGATTTTGACGCCGG 59.902 61.111 0.00 0.00 0.00 6.13
5324 6689 1.509787 CACGCTGATTTTGACGCCG 60.510 57.895 0.00 0.00 0.00 6.46
5325 6690 1.154225 CCACGCTGATTTTGACGCC 60.154 57.895 0.00 0.00 0.00 5.68
5326 6691 1.154225 CCCACGCTGATTTTGACGC 60.154 57.895 0.00 0.00 0.00 5.19
5327 6692 1.501741 CCCCACGCTGATTTTGACG 59.498 57.895 0.00 0.00 0.00 4.35
5328 6693 1.883021 CCCCCACGCTGATTTTGAC 59.117 57.895 0.00 0.00 0.00 3.18
5329 6694 1.976474 GCCCCCACGCTGATTTTGA 60.976 57.895 0.00 0.00 0.00 2.69
5330 6695 2.573340 GCCCCCACGCTGATTTTG 59.427 61.111 0.00 0.00 0.00 2.44
5331 6696 3.061848 CGCCCCCACGCTGATTTT 61.062 61.111 0.00 0.00 0.00 1.82
5332 6697 3.976701 CTCGCCCCCACGCTGATTT 62.977 63.158 0.00 0.00 0.00 2.17
5333 6698 4.473520 CTCGCCCCCACGCTGATT 62.474 66.667 0.00 0.00 0.00 2.57
5382 6747 0.945813 TTAAAACAACCGCGTCTGGG 59.054 50.000 4.92 0.00 0.00 4.45
5383 6748 2.759538 TTTAAAACAACCGCGTCTGG 57.240 45.000 4.92 0.00 0.00 3.86
5405 6770 6.976636 TCAAACTTTGCCGAATTTCTTTTT 57.023 29.167 0.00 0.00 0.00 1.94
5406 6771 8.655651 TTATCAAACTTTGCCGAATTTCTTTT 57.344 26.923 0.00 0.00 0.00 2.27
5407 6772 8.655651 TTTATCAAACTTTGCCGAATTTCTTT 57.344 26.923 0.00 0.00 0.00 2.52
5408 6773 8.831715 ATTTATCAAACTTTGCCGAATTTCTT 57.168 26.923 0.00 0.00 0.00 2.52
5409 6774 8.711457 CAATTTATCAAACTTTGCCGAATTTCT 58.289 29.630 0.00 0.00 0.00 2.52
5410 6775 7.956943 CCAATTTATCAAACTTTGCCGAATTTC 59.043 33.333 0.00 0.00 0.00 2.17
5411 6776 7.659390 TCCAATTTATCAAACTTTGCCGAATTT 59.341 29.630 0.00 0.00 0.00 1.82
5412 6777 7.117667 GTCCAATTTATCAAACTTTGCCGAATT 59.882 33.333 0.00 1.28 0.00 2.17
5413 6778 6.589907 GTCCAATTTATCAAACTTTGCCGAAT 59.410 34.615 0.00 0.00 0.00 3.34
5414 6779 5.923684 GTCCAATTTATCAAACTTTGCCGAA 59.076 36.000 0.00 0.00 0.00 4.30
5415 6780 5.010112 TGTCCAATTTATCAAACTTTGCCGA 59.990 36.000 0.00 0.00 0.00 5.54
5416 6781 5.226396 TGTCCAATTTATCAAACTTTGCCG 58.774 37.500 0.00 0.00 0.00 5.69
5417 6782 7.489574 TTTGTCCAATTTATCAAACTTTGCC 57.510 32.000 0.00 0.00 0.00 4.52
5424 6789 9.092876 GCCGAATATTTTGTCCAATTTATCAAA 57.907 29.630 0.00 0.00 0.00 2.69
5425 6790 8.474025 AGCCGAATATTTTGTCCAATTTATCAA 58.526 29.630 0.00 0.00 0.00 2.57
5426 6791 8.006298 AGCCGAATATTTTGTCCAATTTATCA 57.994 30.769 0.00 0.00 0.00 2.15
5427 6792 9.959749 TTAGCCGAATATTTTGTCCAATTTATC 57.040 29.630 0.00 0.00 0.00 1.75
5428 6793 9.965824 CTTAGCCGAATATTTTGTCCAATTTAT 57.034 29.630 0.00 0.00 0.00 1.40
5429 6794 8.962679 ACTTAGCCGAATATTTTGTCCAATTTA 58.037 29.630 0.00 0.00 0.00 1.40
5430 6795 7.836842 ACTTAGCCGAATATTTTGTCCAATTT 58.163 30.769 0.00 0.00 0.00 1.82
5431 6796 7.404671 ACTTAGCCGAATATTTTGTCCAATT 57.595 32.000 0.00 0.00 0.00 2.32
5432 6797 7.404671 AACTTAGCCGAATATTTTGTCCAAT 57.595 32.000 0.00 0.00 0.00 3.16
5433 6798 6.402766 CGAACTTAGCCGAATATTTTGTCCAA 60.403 38.462 0.00 0.00 0.00 3.53
5434 6799 5.064198 CGAACTTAGCCGAATATTTTGTCCA 59.936 40.000 0.00 0.00 0.00 4.02
5435 6800 5.499047 CGAACTTAGCCGAATATTTTGTCC 58.501 41.667 0.00 0.00 0.00 4.02
5436 6801 5.499047 CCGAACTTAGCCGAATATTTTGTC 58.501 41.667 0.00 0.00 0.00 3.18
5437 6802 4.201881 GCCGAACTTAGCCGAATATTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
5438 6803 4.201871 TGCCGAACTTAGCCGAATATTTTG 60.202 41.667 0.00 0.00 0.00 2.44
5439 6804 3.942748 TGCCGAACTTAGCCGAATATTTT 59.057 39.130 0.00 0.00 0.00 1.82
5440 6805 3.537580 TGCCGAACTTAGCCGAATATTT 58.462 40.909 0.00 0.00 0.00 1.40
5441 6806 3.188159 TGCCGAACTTAGCCGAATATT 57.812 42.857 0.00 0.00 0.00 1.28
5442 6807 2.902705 TGCCGAACTTAGCCGAATAT 57.097 45.000 0.00 0.00 0.00 1.28
5443 6808 2.674357 GTTTGCCGAACTTAGCCGAATA 59.326 45.455 0.00 0.00 35.31 1.75
5444 6809 1.467342 GTTTGCCGAACTTAGCCGAAT 59.533 47.619 0.00 0.00 35.31 3.34
5445 6810 0.869730 GTTTGCCGAACTTAGCCGAA 59.130 50.000 0.00 0.00 35.31 4.30
5446 6811 0.034337 AGTTTGCCGAACTTAGCCGA 59.966 50.000 0.00 0.00 46.34 5.54
5447 6812 0.165944 CAGTTTGCCGAACTTAGCCG 59.834 55.000 0.00 0.00 46.34 5.52
5448 6813 0.521735 CCAGTTTGCCGAACTTAGCC 59.478 55.000 0.00 0.00 46.34 3.93
5449 6814 1.519408 TCCAGTTTGCCGAACTTAGC 58.481 50.000 0.00 0.00 46.34 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.