Multiple sequence alignment - TraesCS3D01G437900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G437900 chr3D 100.000 4169 0 0 1 4169 548724435 548728603 0.000000e+00 7699.0
1 TraesCS3D01G437900 chr3D 80.205 1369 190 46 1080 2423 549349855 549348543 0.000000e+00 952.0
2 TraesCS3D01G437900 chr3D 81.735 1199 163 33 1156 2336 549074044 549072884 0.000000e+00 950.0
3 TraesCS3D01G437900 chr3D 80.919 1284 171 37 1161 2425 549127180 549125952 0.000000e+00 946.0
4 TraesCS3D01G437900 chr3D 80.841 1284 168 45 1163 2429 549061921 549060699 0.000000e+00 937.0
5 TraesCS3D01G437900 chr3D 79.671 1338 183 42 1116 2425 548694331 548695607 0.000000e+00 881.0
6 TraesCS3D01G437900 chr3D 78.540 1384 200 49 1109 2457 548711723 548713044 0.000000e+00 821.0
7 TraesCS3D01G437900 chr3D 80.880 727 96 21 1111 1813 549056878 549056171 2.210000e-147 532.0
8 TraesCS3D01G437900 chr3D 88.969 417 36 3 517 923 589431601 589432017 1.340000e-139 507.0
9 TraesCS3D01G437900 chr3D 79.598 696 96 24 2894 3558 458884139 458883459 1.370000e-124 457.0
10 TraesCS3D01G437900 chr3D 77.845 826 122 38 2893 3681 549060184 549059383 4.910000e-124 455.0
11 TraesCS3D01G437900 chr3D 76.722 842 132 40 2894 3690 549108046 549107224 1.080000e-110 411.0
12 TraesCS3D01G437900 chr3D 84.778 427 43 16 520 929 501791958 501791537 3.880000e-110 409.0
13 TraesCS3D01G437900 chr3D 85.507 414 34 8 520 923 549376983 549376586 3.880000e-110 409.0
14 TraesCS3D01G437900 chr3D 88.652 282 29 1 1175 1456 549109805 549109527 1.440000e-89 340.0
15 TraesCS3D01G437900 chr3D 82.073 357 53 8 2501 2850 549052427 549052075 1.130000e-75 294.0
16 TraesCS3D01G437900 chr3D 86.310 168 23 0 1406 1573 549109532 549109365 2.560000e-42 183.0
17 TraesCS3D01G437900 chr3D 83.333 126 15 5 3786 3910 458883218 458883098 1.230000e-20 111.0
18 TraesCS3D01G437900 chr3D 82.558 86 9 4 3406 3487 548714068 548714151 2.080000e-08 71.3
19 TraesCS3D01G437900 chr3D 100.000 28 0 0 2431 2458 574509931 574509904 8.000000e-03 52.8
20 TraesCS3D01G437900 chr3A 95.958 1707 47 13 2469 4169 686191311 686193001 0.000000e+00 2750.0
21 TraesCS3D01G437900 chr3A 96.566 1427 27 6 1009 2422 686189602 686191019 0.000000e+00 2344.0
22 TraesCS3D01G437900 chr3A 81.334 1334 185 39 1109 2424 686749864 686748577 0.000000e+00 1026.0
23 TraesCS3D01G437900 chr3A 80.616 1331 173 48 1120 2429 686539264 686537998 0.000000e+00 950.0
24 TraesCS3D01G437900 chr3A 80.419 1338 184 44 1112 2425 601133975 601132692 0.000000e+00 948.0
25 TraesCS3D01G437900 chr3A 80.210 1334 182 42 1116 2425 686183071 686184346 0.000000e+00 926.0
26 TraesCS3D01G437900 chr3A 77.305 846 116 49 2894 3690 686583439 686582621 2.980000e-116 429.0
27 TraesCS3D01G437900 chr3A 77.098 834 121 44 2893 3681 686537482 686536674 6.450000e-113 418.0
28 TraesCS3D01G437900 chr3A 83.467 375 43 11 2500 2861 686549374 686549006 8.640000e-87 331.0
29 TraesCS3D01G437900 chr3A 81.220 410 61 8 2494 2889 686184339 686184746 2.420000e-82 316.0
30 TraesCS3D01G437900 chr3A 76.923 598 82 36 2913 3487 686184848 686185412 5.270000e-74 289.0
31 TraesCS3D01G437900 chr3A 80.541 370 55 10 2532 2891 686748511 686748149 6.870000e-68 268.0
32 TraesCS3D01G437900 chr3A 85.714 126 15 2 3786 3910 601131186 601131063 3.380000e-26 130.0
33 TraesCS3D01G437900 chr3A 97.727 44 1 0 2414 2457 686191204 686191247 4.470000e-10 76.8
34 TraesCS3D01G437900 chr3A 89.130 46 5 0 2422 2467 169855931 169855886 1.620000e-04 58.4
35 TraesCS3D01G437900 chr3B 96.021 1357 43 5 999 2348 727786398 727787750 0.000000e+00 2196.0
36 TraesCS3D01G437900 chr3B 93.712 1320 58 11 2863 4169 727789838 727791145 0.000000e+00 1954.0
37 TraesCS3D01G437900 chr3B 81.663 1287 164 43 1112 2368 728585861 728584617 0.000000e+00 1003.0
38 TraesCS3D01G437900 chr3B 80.997 1284 175 38 1161 2425 728754011 728752778 0.000000e+00 955.0
39 TraesCS3D01G437900 chr3B 80.433 1339 185 44 1112 2429 728510834 728509552 0.000000e+00 950.0
40 TraesCS3D01G437900 chr3B 96.132 517 19 1 1 516 224274867 224274351 0.000000e+00 843.0
41 TraesCS3D01G437900 chr3B 79.132 1337 191 48 1116 2425 727740593 727741868 0.000000e+00 843.0
42 TraesCS3D01G437900 chr3B 95.181 415 16 3 2469 2881 727789247 727789659 0.000000e+00 652.0
43 TraesCS3D01G437900 chr3B 81.039 770 111 18 1499 2264 727794133 727794871 7.770000e-162 580.0
44 TraesCS3D01G437900 chr3B 84.486 477 61 11 2893 3361 605910965 605910494 3.800000e-125 459.0
45 TraesCS3D01G437900 chr3B 80.222 450 63 20 2894 3329 728616387 728615950 8.700000e-82 315.0
46 TraesCS3D01G437900 chr3B 80.815 417 56 13 2494 2889 727741861 727742274 5.240000e-79 305.0
47 TraesCS3D01G437900 chr3B 80.864 324 51 9 2534 2850 728502882 728502563 1.160000e-60 244.0
48 TraesCS3D01G437900 chr3B 86.508 126 14 2 3786 3910 605910025 605909902 7.270000e-28 135.0
49 TraesCS3D01G437900 chr3B 85.000 100 11 4 3677 3773 501117657 501117559 9.540000e-17 99.0
50 TraesCS3D01G437900 chr7B 81.049 1277 188 32 1160 2422 543187029 543188265 0.000000e+00 968.0
51 TraesCS3D01G437900 chr7B 95.938 517 20 1 3 518 632120309 632119793 0.000000e+00 837.0
52 TraesCS3D01G437900 chr7B 95.029 523 23 3 3 523 643496567 643497088 0.000000e+00 819.0
53 TraesCS3D01G437900 chr7B 80.337 356 50 11 2548 2891 543188332 543188679 6.920000e-63 252.0
54 TraesCS3D01G437900 chr7B 86.364 176 17 5 3993 4168 543190510 543190678 7.120000e-43 185.0
55 TraesCS3D01G437900 chr1B 96.124 516 18 2 3 516 387286272 387286787 0.000000e+00 841.0
56 TraesCS3D01G437900 chr6B 96.117 515 18 2 3 516 663825796 663826309 0.000000e+00 839.0
57 TraesCS3D01G437900 chr6B 95.938 517 20 1 3 518 366518286 366518802 0.000000e+00 837.0
58 TraesCS3D01G437900 chr6B 95.577 520 22 1 3 521 375635521 375635002 0.000000e+00 832.0
59 TraesCS3D01G437900 chr6B 86.747 415 42 4 520 923 27918653 27918241 2.290000e-122 449.0
60 TraesCS3D01G437900 chr5B 96.117 515 18 2 3 516 162788488 162789001 0.000000e+00 839.0
61 TraesCS3D01G437900 chr5B 96.109 514 20 0 3 516 457954278 457953765 0.000000e+00 839.0
62 TraesCS3D01G437900 chr5B 95.585 521 22 1 3 522 454623976 454623456 0.000000e+00 833.0
63 TraesCS3D01G437900 chr5B 95.202 521 23 2 3 522 112625320 112625839 0.000000e+00 822.0
64 TraesCS3D01G437900 chr5B 97.143 35 1 0 2423 2457 499081063 499081029 4.500000e-05 60.2
65 TraesCS3D01G437900 chr5B 94.595 37 2 0 2431 2467 691198486 691198450 1.620000e-04 58.4
66 TraesCS3D01G437900 chr2B 95.946 518 19 2 3 518 27097216 27097733 0.000000e+00 839.0
67 TraesCS3D01G437900 chr2B 95.577 520 22 1 3 521 707573457 707572938 0.000000e+00 832.0
68 TraesCS3D01G437900 chr2B 94.877 527 24 3 3 528 23857604 23857080 0.000000e+00 821.0
69 TraesCS3D01G437900 chr2B 89.098 266 20 1 517 773 503760495 503760760 5.200000e-84 322.0
70 TraesCS3D01G437900 chr4D 95.577 520 21 2 3 521 469539518 469539000 0.000000e+00 832.0
71 TraesCS3D01G437900 chr4D 95.019 522 25 1 3 523 346039553 346039032 0.000000e+00 819.0
72 TraesCS3D01G437900 chr4D 90.588 85 8 0 3689 3773 486185426 486185342 3.410000e-21 113.0
73 TraesCS3D01G437900 chr4D 87.097 93 7 2 3684 3776 79705977 79706064 2.650000e-17 100.0
74 TraesCS3D01G437900 chr1A 95.029 523 24 2 1 522 531933261 531932740 0.000000e+00 821.0
75 TraesCS3D01G437900 chr6D 90.073 413 32 1 520 923 16178106 16177694 1.030000e-145 527.0
76 TraesCS3D01G437900 chr2D 89.183 416 33 3 517 923 426940490 426940902 3.720000e-140 508.0
77 TraesCS3D01G437900 chr2D 90.909 88 8 0 3686 3773 24948658 24948571 7.320000e-23 119.0
78 TraesCS3D01G437900 chr5D 88.969 417 36 2 517 923 539036881 539037297 1.340000e-139 507.0
79 TraesCS3D01G437900 chr5A 88.489 417 38 2 517 923 73804763 73805179 2.890000e-136 496.0
80 TraesCS3D01G437900 chr5A 87.351 419 38 7 520 923 685998887 685998469 2.270000e-127 466.0
81 TraesCS3D01G437900 chr5A 86.730 422 45 6 520 930 480478379 480477958 3.800000e-125 459.0
82 TraesCS3D01G437900 chr5A 88.372 86 8 2 3690 3773 64367665 64367750 7.370000e-18 102.0
83 TraesCS3D01G437900 chr4A 87.915 422 36 6 520 929 727414566 727414148 2.250000e-132 483.0
84 TraesCS3D01G437900 chr4A 88.372 86 8 2 3689 3773 338747849 338747765 7.370000e-18 102.0
85 TraesCS3D01G437900 chr7A 89.211 380 28 4 555 923 503434047 503434424 2.940000e-126 462.0
86 TraesCS3D01G437900 chr1D 86.207 319 26 7 635 937 468133607 468133923 3.110000e-86 329.0
87 TraesCS3D01G437900 chr2A 87.500 88 11 0 3686 3773 27418344 27418257 7.370000e-18 102.0
88 TraesCS3D01G437900 chr2A 100.000 29 0 0 2429 2457 706762730 706762702 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G437900 chr3D 548724435 548728603 4168 False 7699.000000 7699 100.000000 1 4169 1 chr3D.!!$F2 4168
1 TraesCS3D01G437900 chr3D 549348543 549349855 1312 True 952.000000 952 80.205000 1080 2423 1 chr3D.!!$R4 1343
2 TraesCS3D01G437900 chr3D 549072884 549074044 1160 True 950.000000 950 81.735000 1156 2336 1 chr3D.!!$R2 1180
3 TraesCS3D01G437900 chr3D 549125952 549127180 1228 True 946.000000 946 80.919000 1161 2425 1 chr3D.!!$R3 1264
4 TraesCS3D01G437900 chr3D 548694331 548695607 1276 False 881.000000 881 79.671000 1116 2425 1 chr3D.!!$F1 1309
5 TraesCS3D01G437900 chr3D 549052075 549061921 9846 True 554.500000 937 80.409750 1111 3681 4 chr3D.!!$R8 2570
6 TraesCS3D01G437900 chr3D 548711723 548714151 2428 False 446.150000 821 80.549000 1109 3487 2 chr3D.!!$F4 2378
7 TraesCS3D01G437900 chr3D 549107224 549109805 2581 True 311.333333 411 83.894667 1175 3690 3 chr3D.!!$R9 2515
8 TraesCS3D01G437900 chr3D 458883098 458884139 1041 True 284.000000 457 81.465500 2894 3910 2 chr3D.!!$R7 1016
9 TraesCS3D01G437900 chr3A 686189602 686193001 3399 False 1723.600000 2750 96.750333 1009 4169 3 chr3A.!!$F2 3160
10 TraesCS3D01G437900 chr3A 686536674 686539264 2590 True 684.000000 950 78.857000 1120 3681 2 chr3A.!!$R5 2561
11 TraesCS3D01G437900 chr3A 686748149 686749864 1715 True 647.000000 1026 80.937500 1109 2891 2 chr3A.!!$R6 1782
12 TraesCS3D01G437900 chr3A 601131063 601133975 2912 True 539.000000 948 83.066500 1112 3910 2 chr3A.!!$R4 2798
13 TraesCS3D01G437900 chr3A 686183071 686185412 2341 False 510.333333 926 79.451000 1116 3487 3 chr3A.!!$F1 2371
14 TraesCS3D01G437900 chr3A 686582621 686583439 818 True 429.000000 429 77.305000 2894 3690 1 chr3A.!!$R3 796
15 TraesCS3D01G437900 chr3B 727786398 727794871 8473 False 1345.500000 2196 91.488250 999 4169 4 chr3B.!!$F2 3170
16 TraesCS3D01G437900 chr3B 728584617 728585861 1244 True 1003.000000 1003 81.663000 1112 2368 1 chr3B.!!$R5 1256
17 TraesCS3D01G437900 chr3B 728752778 728754011 1233 True 955.000000 955 80.997000 1161 2425 1 chr3B.!!$R7 1264
18 TraesCS3D01G437900 chr3B 728509552 728510834 1282 True 950.000000 950 80.433000 1112 2429 1 chr3B.!!$R4 1317
19 TraesCS3D01G437900 chr3B 224274351 224274867 516 True 843.000000 843 96.132000 1 516 1 chr3B.!!$R1 515
20 TraesCS3D01G437900 chr3B 727740593 727742274 1681 False 574.000000 843 79.973500 1116 2889 2 chr3B.!!$F1 1773
21 TraesCS3D01G437900 chr3B 605909902 605910965 1063 True 297.000000 459 85.497000 2893 3910 2 chr3B.!!$R8 1017
22 TraesCS3D01G437900 chr7B 632119793 632120309 516 True 837.000000 837 95.938000 3 518 1 chr7B.!!$R1 515
23 TraesCS3D01G437900 chr7B 643496567 643497088 521 False 819.000000 819 95.029000 3 523 1 chr7B.!!$F1 520
24 TraesCS3D01G437900 chr7B 543187029 543190678 3649 False 468.333333 968 82.583333 1160 4168 3 chr7B.!!$F2 3008
25 TraesCS3D01G437900 chr1B 387286272 387286787 515 False 841.000000 841 96.124000 3 516 1 chr1B.!!$F1 513
26 TraesCS3D01G437900 chr6B 663825796 663826309 513 False 839.000000 839 96.117000 3 516 1 chr6B.!!$F2 513
27 TraesCS3D01G437900 chr6B 366518286 366518802 516 False 837.000000 837 95.938000 3 518 1 chr6B.!!$F1 515
28 TraesCS3D01G437900 chr6B 375635002 375635521 519 True 832.000000 832 95.577000 3 521 1 chr6B.!!$R2 518
29 TraesCS3D01G437900 chr5B 162788488 162789001 513 False 839.000000 839 96.117000 3 516 1 chr5B.!!$F2 513
30 TraesCS3D01G437900 chr5B 457953765 457954278 513 True 839.000000 839 96.109000 3 516 1 chr5B.!!$R2 513
31 TraesCS3D01G437900 chr5B 454623456 454623976 520 True 833.000000 833 95.585000 3 522 1 chr5B.!!$R1 519
32 TraesCS3D01G437900 chr5B 112625320 112625839 519 False 822.000000 822 95.202000 3 522 1 chr5B.!!$F1 519
33 TraesCS3D01G437900 chr2B 27097216 27097733 517 False 839.000000 839 95.946000 3 518 1 chr2B.!!$F1 515
34 TraesCS3D01G437900 chr2B 707572938 707573457 519 True 832.000000 832 95.577000 3 521 1 chr2B.!!$R2 518
35 TraesCS3D01G437900 chr2B 23857080 23857604 524 True 821.000000 821 94.877000 3 528 1 chr2B.!!$R1 525
36 TraesCS3D01G437900 chr4D 469539000 469539518 518 True 832.000000 832 95.577000 3 521 1 chr4D.!!$R2 518
37 TraesCS3D01G437900 chr4D 346039032 346039553 521 True 819.000000 819 95.019000 3 523 1 chr4D.!!$R1 520
38 TraesCS3D01G437900 chr1A 531932740 531933261 521 True 821.000000 821 95.029000 1 522 1 chr1A.!!$R1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 796 0.164647 GAAATATAGCGCGCCTGCTG 59.835 55.000 30.33 0.0 46.70 4.41 F
899 902 0.168128 ACTGATTTTTAGCACGCCGC 59.832 50.000 0.00 0.0 42.91 6.53 F
926 929 0.179045 GCCGCTGTTGGAGATGGTAT 60.179 55.000 0.00 0.0 0.00 2.73 F
927 930 1.070134 GCCGCTGTTGGAGATGGTATA 59.930 52.381 0.00 0.0 0.00 1.47 F
1828 1926 2.140717 GGTTACATACCTATGCACCGC 58.859 52.381 0.00 0.0 44.10 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 1926 1.012086 CGATGGTCCTGAAGCACATG 58.988 55.000 0.00 0.00 38.41 3.21 R
2378 3932 4.768583 AGCAGCAAAAGGAAAAATTGACA 58.231 34.783 0.00 0.00 0.00 3.58 R
2891 5072 5.960811 TGGACTCACTTCAGGAAGATATTCT 59.039 40.000 15.51 0.00 40.79 2.40 R
3021 5207 8.119629 ATTCGGATGGAAAACCATCGATAGAAA 61.120 37.037 18.77 9.55 45.24 2.52 R
3626 15505 5.782047 TGGATGTCATTTTAACCTTTGCAG 58.218 37.500 0.00 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 29 0.178947 CCCCAAGGGTTGCCAAAGTA 60.179 55.000 4.11 0.00 38.25 2.24
90 92 3.691342 CGGTGACCGCCCTCAAGA 61.691 66.667 12.53 0.00 41.17 3.02
102 104 2.821437 CCCTCAAGAGTCCCTTAGTGA 58.179 52.381 0.00 0.00 32.86 3.41
155 157 2.433239 GAGAAGATTACGGTGGCCCTAA 59.567 50.000 0.00 0.00 0.00 2.69
298 301 7.886446 AGCCCTTTACTTATGCACTTTACTTTA 59.114 33.333 0.00 0.00 0.00 1.85
483 486 7.267600 CCGTAATTATTTTAAAGCGCCTATTCG 59.732 37.037 2.29 0.00 0.00 3.34
504 507 1.144093 CCCCTCCTCTAGACGACATCT 59.856 57.143 0.00 0.00 41.95 2.90
507 510 3.181453 CCCTCCTCTAGACGACATCTACA 60.181 52.174 0.00 0.00 39.04 2.74
536 539 4.176851 GGGACTCCGACGACGAGC 62.177 72.222 9.28 1.81 42.66 5.03
543 546 4.099170 CGACGACGAGCGGTTCCT 62.099 66.667 0.00 0.00 46.49 3.36
544 547 2.257676 GACGACGAGCGGTTCCTT 59.742 61.111 0.00 0.00 46.49 3.36
545 548 2.049433 ACGACGAGCGGTTCCTTG 60.049 61.111 0.00 0.00 46.49 3.61
546 549 2.257371 CGACGAGCGGTTCCTTGA 59.743 61.111 0.00 0.00 36.03 3.02
547 550 2.087009 CGACGAGCGGTTCCTTGAC 61.087 63.158 0.00 0.00 36.03 3.18
548 551 2.049433 ACGAGCGGTTCCTTGACG 60.049 61.111 0.00 0.00 0.00 4.35
552 555 2.263540 GCGGTTCCTTGACGCCTA 59.736 61.111 0.00 0.00 46.92 3.93
553 556 2.098831 GCGGTTCCTTGACGCCTAC 61.099 63.158 0.00 0.00 46.92 3.18
555 558 2.098831 GGTTCCTTGACGCCTACGC 61.099 63.158 0.00 0.00 45.53 4.42
556 559 1.080025 GTTCCTTGACGCCTACGCT 60.080 57.895 0.00 0.00 45.53 5.07
557 560 1.077089 GTTCCTTGACGCCTACGCTC 61.077 60.000 0.00 0.00 45.53 5.03
558 561 1.529152 TTCCTTGACGCCTACGCTCA 61.529 55.000 0.00 0.00 45.53 4.26
559 562 1.517257 CCTTGACGCCTACGCTCAG 60.517 63.158 0.00 0.00 45.53 3.35
560 563 1.506718 CTTGACGCCTACGCTCAGA 59.493 57.895 0.00 0.00 45.53 3.27
561 564 0.798771 CTTGACGCCTACGCTCAGAC 60.799 60.000 0.00 0.00 45.53 3.51
562 565 2.277373 GACGCCTACGCTCAGACG 60.277 66.667 0.00 0.00 45.53 4.18
564 567 2.277373 CGCCTACGCTCAGACGTC 60.277 66.667 7.70 7.70 44.43 4.34
565 568 2.277373 GCCTACGCTCAGACGTCG 60.277 66.667 10.46 5.48 44.43 5.12
566 569 2.403987 CCTACGCTCAGACGTCGG 59.596 66.667 10.46 10.03 44.43 4.79
567 570 3.482809 CTACGCTCAGACGTCGGA 58.517 61.111 17.50 17.50 44.43 4.55
568 571 1.348938 CTACGCTCAGACGTCGGAG 59.651 63.158 32.97 32.97 44.43 4.63
569 572 2.037913 CTACGCTCAGACGTCGGAGG 62.038 65.000 35.80 28.74 44.43 4.30
570 573 2.511545 TACGCTCAGACGTCGGAGGA 62.512 60.000 35.80 20.24 44.43 3.71
571 574 2.795297 GCTCAGACGTCGGAGGAG 59.205 66.667 35.80 26.93 38.38 3.69
572 575 2.766400 GCTCAGACGTCGGAGGAGG 61.766 68.421 35.80 19.37 38.38 4.30
573 576 1.078356 CTCAGACGTCGGAGGAGGA 60.078 63.158 30.73 11.83 35.08 3.71
574 577 1.370587 CTCAGACGTCGGAGGAGGAC 61.371 65.000 30.73 0.00 35.08 3.85
575 578 1.674651 CAGACGTCGGAGGAGGACA 60.675 63.158 10.41 0.00 34.04 4.02
576 579 1.032657 CAGACGTCGGAGGAGGACAT 61.033 60.000 10.41 0.00 34.04 3.06
577 580 0.748729 AGACGTCGGAGGAGGACATC 60.749 60.000 10.46 0.00 34.04 3.06
578 581 1.001269 ACGTCGGAGGAGGACATCA 60.001 57.895 4.48 0.00 34.04 3.07
579 582 1.313812 ACGTCGGAGGAGGACATCAC 61.314 60.000 4.48 0.00 34.04 3.06
580 583 1.817209 GTCGGAGGAGGACATCACC 59.183 63.158 0.00 0.00 34.56 4.02
581 584 1.753078 TCGGAGGAGGACATCACCG 60.753 63.158 15.34 15.34 44.90 4.94
582 585 1.753078 CGGAGGAGGACATCACCGA 60.753 63.158 16.11 0.00 45.75 4.69
583 586 1.729470 CGGAGGAGGACATCACCGAG 61.729 65.000 16.11 0.00 45.75 4.63
584 587 1.395826 GGAGGAGGACATCACCGAGG 61.396 65.000 0.00 0.00 34.73 4.63
585 588 2.022240 GAGGAGGACATCACCGAGGC 62.022 65.000 0.00 0.00 34.73 4.70
586 589 2.359169 GGAGGACATCACCGAGGCA 61.359 63.158 0.00 0.00 34.73 4.75
587 590 1.690219 GGAGGACATCACCGAGGCAT 61.690 60.000 0.00 0.00 34.73 4.40
588 591 1.040646 GAGGACATCACCGAGGCATA 58.959 55.000 0.00 0.00 34.73 3.14
589 592 1.000283 GAGGACATCACCGAGGCATAG 60.000 57.143 0.00 0.00 34.73 2.23
590 593 0.753262 GGACATCACCGAGGCATAGT 59.247 55.000 0.00 0.00 0.00 2.12
591 594 1.269831 GGACATCACCGAGGCATAGTC 60.270 57.143 0.00 0.00 0.00 2.59
592 595 0.753262 ACATCACCGAGGCATAGTCC 59.247 55.000 0.00 0.00 0.00 3.85
593 596 0.319040 CATCACCGAGGCATAGTCCG 60.319 60.000 0.00 0.00 0.00 4.79
594 597 0.467474 ATCACCGAGGCATAGTCCGA 60.467 55.000 0.00 0.00 0.00 4.55
595 598 1.101635 TCACCGAGGCATAGTCCGAG 61.102 60.000 0.00 0.00 0.00 4.63
596 599 1.076923 ACCGAGGCATAGTCCGAGT 60.077 57.895 0.00 0.00 0.00 4.18
597 600 1.102222 ACCGAGGCATAGTCCGAGTC 61.102 60.000 0.00 0.00 0.00 3.36
598 601 1.280142 CGAGGCATAGTCCGAGTCG 59.720 63.158 5.29 5.29 0.00 4.18
611 614 2.638556 CGAGTCGGAGAATGACAAGT 57.361 50.000 4.10 0.00 39.69 3.16
612 615 3.759527 CGAGTCGGAGAATGACAAGTA 57.240 47.619 4.10 0.00 39.69 2.24
613 616 3.686128 CGAGTCGGAGAATGACAAGTAG 58.314 50.000 4.10 0.00 39.69 2.57
614 617 3.127203 CGAGTCGGAGAATGACAAGTAGT 59.873 47.826 4.10 0.00 39.69 2.73
615 618 4.331992 CGAGTCGGAGAATGACAAGTAGTA 59.668 45.833 4.10 0.00 39.69 1.82
616 619 5.502706 CGAGTCGGAGAATGACAAGTAGTAG 60.503 48.000 4.10 0.00 39.69 2.57
617 620 4.096682 AGTCGGAGAATGACAAGTAGTAGC 59.903 45.833 0.00 0.00 39.69 3.58
618 621 4.014406 TCGGAGAATGACAAGTAGTAGCA 58.986 43.478 0.00 0.00 0.00 3.49
619 622 4.096532 TCGGAGAATGACAAGTAGTAGCAG 59.903 45.833 0.00 0.00 0.00 4.24
620 623 4.142359 CGGAGAATGACAAGTAGTAGCAGT 60.142 45.833 0.00 0.00 0.00 4.40
621 624 5.622460 CGGAGAATGACAAGTAGTAGCAGTT 60.622 44.000 0.00 0.00 0.00 3.16
622 625 6.166982 GGAGAATGACAAGTAGTAGCAGTTT 58.833 40.000 0.00 0.00 0.00 2.66
623 626 6.651225 GGAGAATGACAAGTAGTAGCAGTTTT 59.349 38.462 0.00 0.00 0.00 2.43
624 627 7.173390 GGAGAATGACAAGTAGTAGCAGTTTTT 59.827 37.037 0.00 0.00 0.00 1.94
625 628 8.089115 AGAATGACAAGTAGTAGCAGTTTTTC 57.911 34.615 0.00 0.00 0.00 2.29
626 629 7.715249 AGAATGACAAGTAGTAGCAGTTTTTCA 59.285 33.333 0.00 0.00 0.00 2.69
627 630 7.986085 ATGACAAGTAGTAGCAGTTTTTCAT 57.014 32.000 0.00 0.00 0.00 2.57
628 631 7.801716 TGACAAGTAGTAGCAGTTTTTCATT 57.198 32.000 0.00 0.00 0.00 2.57
629 632 8.220755 TGACAAGTAGTAGCAGTTTTTCATTT 57.779 30.769 0.00 0.00 0.00 2.32
630 633 8.682710 TGACAAGTAGTAGCAGTTTTTCATTTT 58.317 29.630 0.00 0.00 0.00 1.82
669 672 8.348285 AGGAGAAGACTATGAACTATCTATGC 57.652 38.462 0.00 0.00 0.00 3.14
670 673 7.947332 AGGAGAAGACTATGAACTATCTATGCA 59.053 37.037 0.00 0.00 0.00 3.96
671 674 8.026607 GGAGAAGACTATGAACTATCTATGCAC 58.973 40.741 0.00 0.00 0.00 4.57
672 675 8.704849 AGAAGACTATGAACTATCTATGCACT 57.295 34.615 0.00 0.00 0.00 4.40
673 676 9.800572 AGAAGACTATGAACTATCTATGCACTA 57.199 33.333 0.00 0.00 0.00 2.74
684 687 9.982651 AACTATCTATGCACTATTTTGTATCGT 57.017 29.630 0.00 0.00 0.00 3.73
689 692 9.678941 TCTATGCACTATTTTGTATCGTAGAAG 57.321 33.333 0.00 0.00 43.58 2.85
690 693 9.464714 CTATGCACTATTTTGTATCGTAGAAGT 57.535 33.333 0.00 0.00 43.58 3.01
691 694 7.520119 TGCACTATTTTGTATCGTAGAAGTG 57.480 36.000 0.00 0.00 43.58 3.16
692 695 7.317390 TGCACTATTTTGTATCGTAGAAGTGA 58.683 34.615 0.00 0.00 43.58 3.41
693 696 7.274904 TGCACTATTTTGTATCGTAGAAGTGAC 59.725 37.037 0.00 0.00 43.58 3.67
694 697 7.513196 GCACTATTTTGTATCGTAGAAGTGACG 60.513 40.741 0.00 0.00 43.58 4.35
703 706 5.715429 TCGTAGAAGTGACGAACTATCTC 57.285 43.478 0.00 0.00 45.74 2.75
704 707 5.173664 TCGTAGAAGTGACGAACTATCTCA 58.826 41.667 0.00 0.00 45.74 3.27
705 708 5.063186 TCGTAGAAGTGACGAACTATCTCAC 59.937 44.000 0.00 0.00 45.74 3.51
706 709 5.163884 CGTAGAAGTGACGAACTATCTCACA 60.164 44.000 0.00 0.00 42.98 3.58
707 710 5.906113 AGAAGTGACGAACTATCTCACAT 57.094 39.130 0.00 0.00 38.56 3.21
708 711 6.274157 AGAAGTGACGAACTATCTCACATT 57.726 37.500 0.00 0.00 38.56 2.71
709 712 6.692486 AGAAGTGACGAACTATCTCACATTT 58.308 36.000 0.00 0.00 38.56 2.32
710 713 6.587990 AGAAGTGACGAACTATCTCACATTTG 59.412 38.462 0.00 0.00 38.56 2.32
711 714 5.784177 AGTGACGAACTATCTCACATTTGT 58.216 37.500 0.00 0.00 37.36 2.83
712 715 6.920817 AGTGACGAACTATCTCACATTTGTA 58.079 36.000 0.00 0.00 37.36 2.41
713 716 6.807230 AGTGACGAACTATCTCACATTTGTAC 59.193 38.462 0.00 0.00 37.36 2.90
714 717 6.807230 GTGACGAACTATCTCACATTTGTACT 59.193 38.462 0.00 0.00 35.54 2.73
715 718 7.966753 GTGACGAACTATCTCACATTTGTACTA 59.033 37.037 0.00 0.00 35.54 1.82
716 719 8.683615 TGACGAACTATCTCACATTTGTACTAT 58.316 33.333 0.00 0.00 0.00 2.12
717 720 9.171701 GACGAACTATCTCACATTTGTACTATC 57.828 37.037 0.00 0.00 0.00 2.08
718 721 7.856398 ACGAACTATCTCACATTTGTACTATCG 59.144 37.037 0.00 0.00 0.00 2.92
719 722 8.068380 CGAACTATCTCACATTTGTACTATCGA 58.932 37.037 0.00 0.00 0.00 3.59
720 723 9.731819 GAACTATCTCACATTTGTACTATCGAA 57.268 33.333 0.00 0.00 0.00 3.71
722 725 9.517609 ACTATCTCACATTTGTACTATCGAAAC 57.482 33.333 0.00 0.00 0.00 2.78
723 726 7.772332 ATCTCACATTTGTACTATCGAAACC 57.228 36.000 0.00 0.00 0.00 3.27
724 727 6.693466 TCTCACATTTGTACTATCGAAACCA 58.307 36.000 0.00 0.00 0.00 3.67
725 728 7.156000 TCTCACATTTGTACTATCGAAACCAA 58.844 34.615 0.00 0.00 0.00 3.67
726 729 7.658167 TCTCACATTTGTACTATCGAAACCAAA 59.342 33.333 0.00 0.00 0.00 3.28
727 730 8.330466 TCACATTTGTACTATCGAAACCAAAT 57.670 30.769 0.00 0.00 33.97 2.32
730 733 8.380743 CATTTGTACTATCGAAACCAAATGTG 57.619 34.615 19.93 7.68 41.70 3.21
731 734 7.499321 TTTGTACTATCGAAACCAAATGTGT 57.501 32.000 0.00 0.00 0.00 3.72
732 735 8.604640 TTTGTACTATCGAAACCAAATGTGTA 57.395 30.769 0.00 0.00 0.00 2.90
733 736 8.780846 TTGTACTATCGAAACCAAATGTGTAT 57.219 30.769 0.00 0.00 0.00 2.29
734 737 8.415192 TGTACTATCGAAACCAAATGTGTATC 57.585 34.615 0.00 0.00 0.00 2.24
735 738 6.583912 ACTATCGAAACCAAATGTGTATCG 57.416 37.500 0.00 0.00 32.66 2.92
736 739 6.334989 ACTATCGAAACCAAATGTGTATCGA 58.665 36.000 7.18 7.18 39.84 3.59
737 740 6.814644 ACTATCGAAACCAAATGTGTATCGAA 59.185 34.615 8.41 0.80 39.34 3.71
738 741 6.677781 ATCGAAACCAAATGTGTATCGAAT 57.322 33.333 8.41 0.00 39.34 3.34
739 742 6.102006 TCGAAACCAAATGTGTATCGAATC 57.898 37.500 0.00 0.00 35.66 2.52
740 743 4.955590 CGAAACCAAATGTGTATCGAATCG 59.044 41.667 0.00 0.00 32.96 3.34
741 744 5.445407 CGAAACCAAATGTGTATCGAATCGT 60.445 40.000 1.52 0.00 32.96 3.73
742 745 6.237622 CGAAACCAAATGTGTATCGAATCGTA 60.238 38.462 1.52 0.00 32.96 3.43
743 746 6.971527 AACCAAATGTGTATCGAATCGTAA 57.028 33.333 1.52 0.00 0.00 3.18
744 747 7.548196 AACCAAATGTGTATCGAATCGTAAT 57.452 32.000 1.52 0.00 0.00 1.89
745 748 7.548196 ACCAAATGTGTATCGAATCGTAATT 57.452 32.000 1.52 0.00 0.00 1.40
746 749 7.981142 ACCAAATGTGTATCGAATCGTAATTT 58.019 30.769 1.52 0.00 0.00 1.82
747 750 9.100554 ACCAAATGTGTATCGAATCGTAATTTA 57.899 29.630 1.52 0.00 0.00 1.40
748 751 9.365311 CCAAATGTGTATCGAATCGTAATTTAC 57.635 33.333 1.52 0.00 0.00 2.01
749 752 9.909043 CAAATGTGTATCGAATCGTAATTTACA 57.091 29.630 1.52 3.00 0.00 2.41
753 756 9.955208 TGTGTATCGAATCGTAATTTACATAGT 57.045 29.630 1.52 0.00 0.00 2.12
757 760 8.684973 ATCGAATCGTAATTTACATAGTAGGC 57.315 34.615 1.52 0.00 0.00 3.93
758 761 6.798476 TCGAATCGTAATTTACATAGTAGGCG 59.202 38.462 1.52 0.00 0.00 5.52
759 762 6.580041 CGAATCGTAATTTACATAGTAGGCGT 59.420 38.462 7.31 0.00 0.00 5.68
760 763 7.201215 CGAATCGTAATTTACATAGTAGGCGTC 60.201 40.741 7.31 0.00 0.00 5.19
761 764 6.375945 TCGTAATTTACATAGTAGGCGTCA 57.624 37.500 7.31 0.00 0.00 4.35
762 765 6.794374 TCGTAATTTACATAGTAGGCGTCAA 58.206 36.000 7.31 0.00 0.00 3.18
763 766 6.914215 TCGTAATTTACATAGTAGGCGTCAAG 59.086 38.462 7.31 0.00 0.00 3.02
764 767 6.914215 CGTAATTTACATAGTAGGCGTCAAGA 59.086 38.462 7.31 0.00 0.00 3.02
765 768 7.433131 CGTAATTTACATAGTAGGCGTCAAGAA 59.567 37.037 7.31 0.00 0.00 2.52
766 769 9.090692 GTAATTTACATAGTAGGCGTCAAGAAA 57.909 33.333 1.62 0.00 0.00 2.52
767 770 8.556213 AATTTACATAGTAGGCGTCAAGAAAA 57.444 30.769 0.00 0.00 0.00 2.29
768 771 7.966246 TTTACATAGTAGGCGTCAAGAAAAA 57.034 32.000 0.00 0.00 0.00 1.94
790 793 3.609103 AAAAGAAATATAGCGCGCCTG 57.391 42.857 30.33 0.00 0.00 4.85
791 794 0.868406 AAGAAATATAGCGCGCCTGC 59.132 50.000 30.33 10.50 37.91 4.85
793 796 0.164647 GAAATATAGCGCGCCTGCTG 59.835 55.000 30.33 0.00 46.70 4.41
794 797 1.230635 AAATATAGCGCGCCTGCTGG 61.231 55.000 30.33 5.03 46.70 4.85
795 798 2.099652 AATATAGCGCGCCTGCTGGA 62.100 55.000 30.33 6.69 46.70 3.86
796 799 2.498291 ATATAGCGCGCCTGCTGGAG 62.498 60.000 30.33 11.77 46.70 3.86
816 819 3.573491 GCTCGGGCGCGCTTTATT 61.573 61.111 32.29 0.00 0.00 1.40
817 820 3.098555 CTCGGGCGCGCTTTATTT 58.901 55.556 32.29 0.00 0.00 1.40
818 821 1.427819 CTCGGGCGCGCTTTATTTT 59.572 52.632 32.29 0.00 0.00 1.82
819 822 0.861450 CTCGGGCGCGCTTTATTTTG 60.861 55.000 32.29 11.57 0.00 2.44
820 823 2.504653 CGGGCGCGCTTTATTTTGC 61.505 57.895 32.29 10.56 0.00 3.68
826 829 3.383861 GCTTTATTTTGCGGCGGC 58.616 55.556 9.78 9.68 40.52 6.53
827 830 2.164663 GCTTTATTTTGCGGCGGCC 61.165 57.895 14.25 9.54 38.85 6.13
828 831 1.214062 CTTTATTTTGCGGCGGCCA 59.786 52.632 20.71 0.00 38.85 5.36
829 832 1.075979 CTTTATTTTGCGGCGGCCAC 61.076 55.000 20.71 10.42 38.85 5.01
830 833 1.528292 TTTATTTTGCGGCGGCCACT 61.528 50.000 20.71 0.00 38.85 4.00
831 834 2.206515 TTATTTTGCGGCGGCCACTG 62.207 55.000 20.71 0.00 38.85 3.66
843 846 3.357079 CCACTGGAGCCAACGCAC 61.357 66.667 0.00 0.00 37.52 5.34
844 847 3.716006 CACTGGAGCCAACGCACG 61.716 66.667 0.00 0.00 37.52 5.34
845 848 4.988598 ACTGGAGCCAACGCACGG 62.989 66.667 0.00 0.00 37.52 4.94
867 870 4.395583 GCGCACAAGCTGGCTCAC 62.396 66.667 0.30 0.00 39.10 3.51
868 871 3.730761 CGCACAAGCTGGCTCACC 61.731 66.667 0.00 0.00 39.10 4.02
869 872 3.368571 GCACAAGCTGGCTCACCC 61.369 66.667 0.00 0.00 37.91 4.61
870 873 3.052082 CACAAGCTGGCTCACCCG 61.052 66.667 0.00 0.00 35.87 5.28
871 874 4.335647 ACAAGCTGGCTCACCCGG 62.336 66.667 0.00 0.00 43.38 5.73
878 881 3.702048 GGCTCACCCGGCACTGTA 61.702 66.667 0.00 0.00 0.00 2.74
879 882 2.584608 GCTCACCCGGCACTGTAT 59.415 61.111 0.00 0.00 0.00 2.29
880 883 1.682451 GGCTCACCCGGCACTGTATA 61.682 60.000 0.00 0.00 0.00 1.47
881 884 0.529992 GCTCACCCGGCACTGTATAC 60.530 60.000 0.00 0.00 0.00 1.47
882 885 1.112113 CTCACCCGGCACTGTATACT 58.888 55.000 4.17 0.00 0.00 2.12
883 886 0.821517 TCACCCGGCACTGTATACTG 59.178 55.000 8.11 8.11 0.00 2.74
884 887 0.821517 CACCCGGCACTGTATACTGA 59.178 55.000 15.84 0.00 0.00 3.41
885 888 1.412710 CACCCGGCACTGTATACTGAT 59.587 52.381 15.84 0.00 0.00 2.90
886 889 2.116238 ACCCGGCACTGTATACTGATT 58.884 47.619 15.84 0.00 0.00 2.57
887 890 2.504175 ACCCGGCACTGTATACTGATTT 59.496 45.455 15.84 0.00 0.00 2.17
888 891 3.054655 ACCCGGCACTGTATACTGATTTT 60.055 43.478 15.84 0.00 0.00 1.82
889 892 3.945285 CCCGGCACTGTATACTGATTTTT 59.055 43.478 15.84 0.00 0.00 1.94
890 893 5.120399 CCCGGCACTGTATACTGATTTTTA 58.880 41.667 15.84 0.00 0.00 1.52
891 894 5.236478 CCCGGCACTGTATACTGATTTTTAG 59.764 44.000 15.84 0.00 0.00 1.85
892 895 5.277345 CCGGCACTGTATACTGATTTTTAGC 60.277 44.000 15.84 7.77 0.00 3.09
893 896 5.293324 CGGCACTGTATACTGATTTTTAGCA 59.707 40.000 15.84 0.00 0.00 3.49
894 897 6.487103 GGCACTGTATACTGATTTTTAGCAC 58.513 40.000 15.84 0.00 0.00 4.40
895 898 6.185399 GCACTGTATACTGATTTTTAGCACG 58.815 40.000 15.84 0.00 0.00 5.34
896 899 6.185399 CACTGTATACTGATTTTTAGCACGC 58.815 40.000 15.84 0.00 0.00 5.34
897 900 5.293569 ACTGTATACTGATTTTTAGCACGCC 59.706 40.000 15.84 0.00 0.00 5.68
898 901 3.944422 ATACTGATTTTTAGCACGCCG 57.056 42.857 0.00 0.00 0.00 6.46
899 902 0.168128 ACTGATTTTTAGCACGCCGC 59.832 50.000 0.00 0.00 42.91 6.53
916 919 4.781959 CGCATTGGGCCGCTGTTG 62.782 66.667 0.00 0.00 40.31 3.33
917 920 4.440127 GCATTGGGCCGCTGTTGG 62.440 66.667 0.00 0.00 36.11 3.77
918 921 2.676121 CATTGGGCCGCTGTTGGA 60.676 61.111 0.00 0.00 0.00 3.53
919 922 2.361610 ATTGGGCCGCTGTTGGAG 60.362 61.111 0.00 0.00 0.00 3.86
920 923 2.905996 ATTGGGCCGCTGTTGGAGA 61.906 57.895 0.00 0.00 0.00 3.71
921 924 2.215451 ATTGGGCCGCTGTTGGAGAT 62.215 55.000 0.00 0.00 0.00 2.75
922 925 2.825836 GGGCCGCTGTTGGAGATG 60.826 66.667 0.00 0.00 0.00 2.90
923 926 2.825836 GGCCGCTGTTGGAGATGG 60.826 66.667 0.00 0.00 0.00 3.51
924 927 2.045926 GCCGCTGTTGGAGATGGT 60.046 61.111 0.00 0.00 0.00 3.55
925 928 1.220749 GCCGCTGTTGGAGATGGTA 59.779 57.895 0.00 0.00 0.00 3.25
926 929 0.179045 GCCGCTGTTGGAGATGGTAT 60.179 55.000 0.00 0.00 0.00 2.73
927 930 1.070134 GCCGCTGTTGGAGATGGTATA 59.930 52.381 0.00 0.00 0.00 1.47
928 931 2.484770 GCCGCTGTTGGAGATGGTATAA 60.485 50.000 0.00 0.00 0.00 0.98
929 932 3.393800 CCGCTGTTGGAGATGGTATAAG 58.606 50.000 0.00 0.00 0.00 1.73
930 933 3.069586 CCGCTGTTGGAGATGGTATAAGA 59.930 47.826 0.00 0.00 0.00 2.10
931 934 4.051922 CGCTGTTGGAGATGGTATAAGAC 58.948 47.826 0.00 0.00 0.00 3.01
932 935 4.051922 GCTGTTGGAGATGGTATAAGACG 58.948 47.826 0.00 0.00 0.00 4.18
933 936 4.051922 CTGTTGGAGATGGTATAAGACGC 58.948 47.826 0.00 0.00 0.00 5.19
934 937 3.704566 TGTTGGAGATGGTATAAGACGCT 59.295 43.478 0.00 0.00 0.00 5.07
935 938 4.891168 TGTTGGAGATGGTATAAGACGCTA 59.109 41.667 0.00 0.00 0.00 4.26
936 939 5.361571 TGTTGGAGATGGTATAAGACGCTAA 59.638 40.000 0.00 0.00 0.00 3.09
937 940 6.127281 TGTTGGAGATGGTATAAGACGCTAAA 60.127 38.462 0.00 0.00 0.00 1.85
938 941 6.474140 TGGAGATGGTATAAGACGCTAAAA 57.526 37.500 0.00 0.00 0.00 1.52
939 942 6.880484 TGGAGATGGTATAAGACGCTAAAAA 58.120 36.000 0.00 0.00 0.00 1.94
961 964 4.863152 ACGTTTGTTAGCGTTTTACACT 57.137 36.364 0.00 0.00 38.21 3.55
962 965 5.220557 ACGTTTGTTAGCGTTTTACACTT 57.779 34.783 0.00 0.00 38.21 3.16
963 966 5.630061 ACGTTTGTTAGCGTTTTACACTTT 58.370 33.333 0.00 0.00 38.21 2.66
964 967 6.770076 ACGTTTGTTAGCGTTTTACACTTTA 58.230 32.000 0.00 0.00 38.21 1.85
965 968 7.408910 ACGTTTGTTAGCGTTTTACACTTTAT 58.591 30.769 0.00 0.00 38.21 1.40
966 969 7.909641 ACGTTTGTTAGCGTTTTACACTTTATT 59.090 29.630 0.00 0.00 38.21 1.40
967 970 8.735837 CGTTTGTTAGCGTTTTACACTTTATTT 58.264 29.630 0.00 0.00 0.00 1.40
1828 1926 2.140717 GGTTACATACCTATGCACCGC 58.859 52.381 0.00 0.00 44.10 5.68
2275 2393 5.979517 GCTGCAGGTAAAAATATCAATCACC 59.020 40.000 17.12 0.00 0.00 4.02
2336 2461 8.885494 TTTTTGTAATTAGTTGCTGAAATGCT 57.115 26.923 0.00 0.00 0.00 3.79
2378 3932 6.829229 TGATTGAAGCTCAGTTCAAATCAT 57.171 33.333 2.82 0.00 46.73 2.45
2457 4204 7.414098 CCGTCCCAAATTACTTGTCTTAGATTG 60.414 40.741 0.00 0.00 32.65 2.67
2458 4205 7.333423 CGTCCCAAATTACTTGTCTTAGATTGA 59.667 37.037 0.00 0.00 32.65 2.57
2571 4388 6.090898 GTGTTTCGAATGTAGTCTTATGTGCT 59.909 38.462 0.00 0.00 0.00 4.40
2776 4610 2.927014 GCTTCGTCTGACAAGGAATCGT 60.927 50.000 8.73 0.00 0.00 3.73
2935 5120 8.814038 AGTCCATTTGCACTAGAGAATAAATT 57.186 30.769 0.00 0.00 0.00 1.82
3626 15505 0.179086 GCTCTGCTCTTCTAGTGCCC 60.179 60.000 0.00 0.00 34.08 5.36
3715 15599 3.264450 CCTCAGTCCCCAAATGTAAGACT 59.736 47.826 0.00 0.00 38.30 3.24
3727 15611 7.812669 CCCAAATGTAAGACTATTTTTGACACC 59.187 37.037 0.00 0.00 0.00 4.16
3943 15832 6.240894 TCTTTGTGAGCTAACTGATTGGATT 58.759 36.000 2.06 0.00 0.00 3.01
3944 15833 7.394016 TCTTTGTGAGCTAACTGATTGGATTA 58.606 34.615 2.06 0.00 0.00 1.75
3945 15834 8.049117 TCTTTGTGAGCTAACTGATTGGATTAT 58.951 33.333 2.06 0.00 0.00 1.28
3986 15875 1.474077 CAGGTTGCAGGAATGGCTTAC 59.526 52.381 0.00 0.00 0.00 2.34
3987 15876 0.817654 GGTTGCAGGAATGGCTTACC 59.182 55.000 0.00 0.00 32.48 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 92 3.576982 TGTCGTGATTTCACTAAGGGACT 59.423 43.478 8.91 0.00 44.34 3.85
102 104 4.478699 CACAATGCAAGATGTCGTGATTT 58.521 39.130 0.00 0.00 0.00 2.17
155 157 1.279846 CAATGCTCCCCAAAAAGCCAT 59.720 47.619 0.00 0.00 37.73 4.40
162 164 0.899717 GAGGCACAATGCTCCCCAAA 60.900 55.000 0.13 0.00 44.28 3.28
298 301 8.701908 ATGACAAAGAACAATATGGCTATCAT 57.298 30.769 0.00 0.00 39.78 2.45
391 394 6.402222 TGTCAAGCACAAAACCTAAAACAAT 58.598 32.000 0.00 0.00 29.30 2.71
483 486 0.468400 ATGTCGTCTAGAGGAGGGGC 60.468 60.000 15.24 4.81 0.00 5.80
504 507 2.235402 GAGTCCCGGGTGAAAGATTGTA 59.765 50.000 22.86 0.00 0.00 2.41
507 510 0.618981 GGAGTCCCGGGTGAAAGATT 59.381 55.000 22.86 0.00 0.00 2.40
528 531 2.049433 CAAGGAACCGCTCGTCGT 60.049 61.111 0.00 0.00 36.19 4.34
529 532 2.087009 GTCAAGGAACCGCTCGTCG 61.087 63.158 0.00 0.00 38.08 5.12
530 533 2.087009 CGTCAAGGAACCGCTCGTC 61.087 63.158 0.00 0.00 0.00 4.20
531 534 2.049433 CGTCAAGGAACCGCTCGT 60.049 61.111 0.00 0.00 0.00 4.18
532 535 3.479269 GCGTCAAGGAACCGCTCG 61.479 66.667 0.00 0.00 43.81 5.03
533 536 2.221906 TAGGCGTCAAGGAACCGCTC 62.222 60.000 0.00 0.00 46.23 5.03
534 537 2.280552 TAGGCGTCAAGGAACCGCT 61.281 57.895 0.00 0.00 46.23 5.52
535 538 2.098831 GTAGGCGTCAAGGAACCGC 61.099 63.158 0.00 0.00 46.28 5.68
536 539 1.804326 CGTAGGCGTCAAGGAACCG 60.804 63.158 0.00 0.00 0.00 4.44
537 540 2.098831 GCGTAGGCGTCAAGGAACC 61.099 63.158 0.00 0.00 40.81 3.62
538 541 1.077089 GAGCGTAGGCGTCAAGGAAC 61.077 60.000 1.05 0.00 46.35 3.62
539 542 1.214589 GAGCGTAGGCGTCAAGGAA 59.785 57.895 1.05 0.00 46.35 3.36
540 543 1.934220 CTGAGCGTAGGCGTCAAGGA 61.934 60.000 1.05 0.00 46.35 3.36
541 544 1.517257 CTGAGCGTAGGCGTCAAGG 60.517 63.158 1.05 0.00 46.35 3.61
542 545 0.798771 GTCTGAGCGTAGGCGTCAAG 60.799 60.000 1.05 0.00 46.35 3.02
543 546 1.211969 GTCTGAGCGTAGGCGTCAA 59.788 57.895 1.05 0.00 46.35 3.18
544 547 2.875485 GTCTGAGCGTAGGCGTCA 59.125 61.111 1.05 5.71 46.35 4.35
545 548 2.277373 CGTCTGAGCGTAGGCGTC 60.277 66.667 8.75 1.30 46.35 5.19
548 551 2.277373 CGACGTCTGAGCGTAGGC 60.277 66.667 14.70 0.00 45.79 3.93
550 553 1.348938 CTCCGACGTCTGAGCGTAG 59.651 63.158 21.67 1.82 45.79 3.51
551 554 2.104859 CCTCCGACGTCTGAGCGTA 61.105 63.158 26.26 0.00 45.79 4.42
553 556 3.102107 CTCCTCCGACGTCTGAGCG 62.102 68.421 26.26 19.97 37.94 5.03
554 557 2.766400 CCTCCTCCGACGTCTGAGC 61.766 68.421 26.26 0.00 0.00 4.26
555 558 1.078356 TCCTCCTCCGACGTCTGAG 60.078 63.158 25.12 25.12 0.00 3.35
556 559 1.376942 GTCCTCCTCCGACGTCTGA 60.377 63.158 14.70 11.91 0.00 3.27
557 560 1.032657 ATGTCCTCCTCCGACGTCTG 61.033 60.000 14.70 7.40 32.68 3.51
558 561 0.748729 GATGTCCTCCTCCGACGTCT 60.749 60.000 14.70 0.00 41.22 4.18
559 562 1.030488 TGATGTCCTCCTCCGACGTC 61.030 60.000 5.18 5.18 43.59 4.34
560 563 1.001269 TGATGTCCTCCTCCGACGT 60.001 57.895 0.00 0.00 32.68 4.34
561 564 1.433879 GTGATGTCCTCCTCCGACG 59.566 63.158 0.00 0.00 32.68 5.12
562 565 1.817209 GGTGATGTCCTCCTCCGAC 59.183 63.158 0.00 0.00 0.00 4.79
563 566 1.753078 CGGTGATGTCCTCCTCCGA 60.753 63.158 0.00 0.00 40.48 4.55
564 567 1.729470 CTCGGTGATGTCCTCCTCCG 61.729 65.000 0.00 0.00 39.86 4.63
565 568 1.395826 CCTCGGTGATGTCCTCCTCC 61.396 65.000 0.00 0.00 0.00 4.30
566 569 2.022240 GCCTCGGTGATGTCCTCCTC 62.022 65.000 0.00 0.00 0.00 3.71
567 570 2.060980 GCCTCGGTGATGTCCTCCT 61.061 63.158 0.00 0.00 0.00 3.69
568 571 1.690219 ATGCCTCGGTGATGTCCTCC 61.690 60.000 0.00 0.00 0.00 4.30
569 572 1.000283 CTATGCCTCGGTGATGTCCTC 60.000 57.143 0.00 0.00 0.00 3.71
570 573 1.043816 CTATGCCTCGGTGATGTCCT 58.956 55.000 0.00 0.00 0.00 3.85
571 574 0.753262 ACTATGCCTCGGTGATGTCC 59.247 55.000 0.00 0.00 0.00 4.02
572 575 1.269831 GGACTATGCCTCGGTGATGTC 60.270 57.143 0.00 0.00 0.00 3.06
573 576 0.753262 GGACTATGCCTCGGTGATGT 59.247 55.000 0.00 0.00 0.00 3.06
574 577 0.319040 CGGACTATGCCTCGGTGATG 60.319 60.000 0.00 0.00 0.00 3.07
575 578 0.467474 TCGGACTATGCCTCGGTGAT 60.467 55.000 0.00 0.00 0.00 3.06
576 579 1.077285 TCGGACTATGCCTCGGTGA 60.077 57.895 0.00 0.00 0.00 4.02
577 580 1.360551 CTCGGACTATGCCTCGGTG 59.639 63.158 0.00 0.00 0.00 4.94
578 581 1.076923 ACTCGGACTATGCCTCGGT 60.077 57.895 0.00 0.00 0.00 4.69
579 582 1.655329 GACTCGGACTATGCCTCGG 59.345 63.158 0.00 0.00 0.00 4.63
580 583 1.280142 CGACTCGGACTATGCCTCG 59.720 63.158 0.00 0.00 0.00 4.63
592 595 2.638556 ACTTGTCATTCTCCGACTCG 57.361 50.000 0.00 0.00 34.37 4.18
593 596 4.705337 ACTACTTGTCATTCTCCGACTC 57.295 45.455 0.00 0.00 34.37 3.36
594 597 4.096682 GCTACTACTTGTCATTCTCCGACT 59.903 45.833 0.00 0.00 34.37 4.18
595 598 4.142447 TGCTACTACTTGTCATTCTCCGAC 60.142 45.833 0.00 0.00 0.00 4.79
596 599 4.014406 TGCTACTACTTGTCATTCTCCGA 58.986 43.478 0.00 0.00 0.00 4.55
597 600 4.142359 ACTGCTACTACTTGTCATTCTCCG 60.142 45.833 0.00 0.00 0.00 4.63
598 601 5.331876 ACTGCTACTACTTGTCATTCTCC 57.668 43.478 0.00 0.00 0.00 3.71
599 602 7.659652 AAAACTGCTACTACTTGTCATTCTC 57.340 36.000 0.00 0.00 0.00 2.87
600 603 7.715249 TGAAAAACTGCTACTACTTGTCATTCT 59.285 33.333 0.00 0.00 0.00 2.40
601 604 7.861630 TGAAAAACTGCTACTACTTGTCATTC 58.138 34.615 0.00 0.00 0.00 2.67
602 605 7.801716 TGAAAAACTGCTACTACTTGTCATT 57.198 32.000 0.00 0.00 0.00 2.57
603 606 7.986085 ATGAAAAACTGCTACTACTTGTCAT 57.014 32.000 0.00 0.00 0.00 3.06
604 607 7.801716 AATGAAAAACTGCTACTACTTGTCA 57.198 32.000 0.00 0.00 0.00 3.58
643 646 9.456147 GCATAGATAGTTCATAGTCTTCTCCTA 57.544 37.037 0.00 0.00 0.00 2.94
644 647 7.947332 TGCATAGATAGTTCATAGTCTTCTCCT 59.053 37.037 0.00 0.00 0.00 3.69
645 648 8.026607 GTGCATAGATAGTTCATAGTCTTCTCC 58.973 40.741 0.00 0.00 0.00 3.71
646 649 8.792633 AGTGCATAGATAGTTCATAGTCTTCTC 58.207 37.037 0.00 0.00 0.00 2.87
647 650 8.704849 AGTGCATAGATAGTTCATAGTCTTCT 57.295 34.615 0.00 0.00 0.00 2.85
658 661 9.982651 ACGATACAAAATAGTGCATAGATAGTT 57.017 29.630 0.00 0.00 0.00 2.24
663 666 9.678941 CTTCTACGATACAAAATAGTGCATAGA 57.321 33.333 0.00 0.00 0.00 1.98
664 667 9.464714 ACTTCTACGATACAAAATAGTGCATAG 57.535 33.333 0.00 0.00 0.00 2.23
665 668 9.244799 CACTTCTACGATACAAAATAGTGCATA 57.755 33.333 0.00 0.00 0.00 3.14
666 669 7.979537 TCACTTCTACGATACAAAATAGTGCAT 59.020 33.333 0.00 0.00 32.63 3.96
667 670 7.274904 GTCACTTCTACGATACAAAATAGTGCA 59.725 37.037 0.00 0.00 32.63 4.57
668 671 7.513196 CGTCACTTCTACGATACAAAATAGTGC 60.513 40.741 0.00 0.00 42.90 4.40
669 672 7.695201 TCGTCACTTCTACGATACAAAATAGTG 59.305 37.037 0.00 0.00 43.90 2.74
670 673 7.755591 TCGTCACTTCTACGATACAAAATAGT 58.244 34.615 0.00 0.00 43.90 2.12
681 684 5.063186 GTGAGATAGTTCGTCACTTCTACGA 59.937 44.000 0.00 0.00 46.82 3.43
682 685 5.163884 TGTGAGATAGTTCGTCACTTCTACG 60.164 44.000 3.59 0.00 41.06 3.51
683 686 6.179504 TGTGAGATAGTTCGTCACTTCTAC 57.820 41.667 3.59 0.00 41.06 2.59
684 687 7.392494 AATGTGAGATAGTTCGTCACTTCTA 57.608 36.000 3.59 0.00 41.06 2.10
685 688 5.906113 ATGTGAGATAGTTCGTCACTTCT 57.094 39.130 3.59 3.13 41.06 2.85
686 689 6.366332 ACAAATGTGAGATAGTTCGTCACTTC 59.634 38.462 0.00 0.00 41.06 3.01
687 690 6.223852 ACAAATGTGAGATAGTTCGTCACTT 58.776 36.000 0.00 0.00 41.06 3.16
688 691 5.784177 ACAAATGTGAGATAGTTCGTCACT 58.216 37.500 0.00 0.00 41.06 3.41
689 692 6.807230 AGTACAAATGTGAGATAGTTCGTCAC 59.193 38.462 0.00 0.00 40.89 3.67
690 693 6.920817 AGTACAAATGTGAGATAGTTCGTCA 58.079 36.000 0.00 0.00 0.00 4.35
691 694 9.171701 GATAGTACAAATGTGAGATAGTTCGTC 57.828 37.037 0.00 0.00 0.00 4.20
692 695 7.856398 CGATAGTACAAATGTGAGATAGTTCGT 59.144 37.037 0.00 0.00 0.00 3.85
693 696 8.068380 TCGATAGTACAAATGTGAGATAGTTCG 58.932 37.037 0.00 0.00 37.40 3.95
694 697 9.731819 TTCGATAGTACAAATGTGAGATAGTTC 57.268 33.333 0.00 0.00 37.40 3.01
696 699 9.517609 GTTTCGATAGTACAAATGTGAGATAGT 57.482 33.333 0.00 0.00 37.40 2.12
697 700 8.969267 GGTTTCGATAGTACAAATGTGAGATAG 58.031 37.037 0.00 0.00 37.40 2.08
698 701 8.471609 TGGTTTCGATAGTACAAATGTGAGATA 58.528 33.333 0.00 0.00 37.40 1.98
699 702 7.327975 TGGTTTCGATAGTACAAATGTGAGAT 58.672 34.615 0.00 0.00 37.40 2.75
700 703 6.693466 TGGTTTCGATAGTACAAATGTGAGA 58.307 36.000 0.00 0.00 37.40 3.27
701 704 6.961359 TGGTTTCGATAGTACAAATGTGAG 57.039 37.500 0.00 0.00 37.40 3.51
702 705 7.731882 TTTGGTTTCGATAGTACAAATGTGA 57.268 32.000 0.00 0.00 37.40 3.58
703 706 8.380743 CATTTGGTTTCGATAGTACAAATGTG 57.619 34.615 20.96 8.94 41.96 3.21
705 708 8.020819 ACACATTTGGTTTCGATAGTACAAATG 58.979 33.333 24.18 24.18 46.08 2.32
706 709 8.106247 ACACATTTGGTTTCGATAGTACAAAT 57.894 30.769 0.00 0.00 36.90 2.32
707 710 7.499321 ACACATTTGGTTTCGATAGTACAAA 57.501 32.000 0.00 0.00 33.13 2.83
708 711 8.780846 ATACACATTTGGTTTCGATAGTACAA 57.219 30.769 0.00 0.00 37.40 2.41
709 712 7.221259 CGATACACATTTGGTTTCGATAGTACA 59.779 37.037 0.00 0.00 40.55 2.90
710 713 7.433131 TCGATACACATTTGGTTTCGATAGTAC 59.567 37.037 4.44 0.00 41.46 2.73
711 714 7.482474 TCGATACACATTTGGTTTCGATAGTA 58.518 34.615 4.44 0.00 41.46 1.82
712 715 6.334989 TCGATACACATTTGGTTTCGATAGT 58.665 36.000 4.44 0.00 41.46 2.12
713 716 6.822073 TCGATACACATTTGGTTTCGATAG 57.178 37.500 4.44 0.00 41.46 2.08
714 717 7.306341 CGATTCGATACACATTTGGTTTCGATA 60.306 37.037 0.00 2.53 44.15 2.92
715 718 6.509517 CGATTCGATACACATTTGGTTTCGAT 60.510 38.462 0.00 1.46 44.15 3.59
716 719 5.220322 CGATTCGATACACATTTGGTTTCGA 60.220 40.000 0.00 4.44 43.47 3.71
717 720 4.955590 CGATTCGATACACATTTGGTTTCG 59.044 41.667 0.00 0.00 39.83 3.46
718 721 5.864986 ACGATTCGATACACATTTGGTTTC 58.135 37.500 13.95 0.00 0.00 2.78
719 722 5.873179 ACGATTCGATACACATTTGGTTT 57.127 34.783 13.95 0.00 0.00 3.27
720 723 6.971527 TTACGATTCGATACACATTTGGTT 57.028 33.333 13.95 0.00 0.00 3.67
721 724 7.548196 AATTACGATTCGATACACATTTGGT 57.452 32.000 13.95 0.00 0.00 3.67
722 725 9.365311 GTAAATTACGATTCGATACACATTTGG 57.635 33.333 13.95 0.00 0.00 3.28
723 726 9.909043 TGTAAATTACGATTCGATACACATTTG 57.091 29.630 13.95 0.00 0.00 2.32
727 730 9.955208 ACTATGTAAATTACGATTCGATACACA 57.045 29.630 13.95 8.83 0.00 3.72
731 734 9.778993 GCCTACTATGTAAATTACGATTCGATA 57.221 33.333 13.95 0.06 0.00 2.92
732 735 7.484007 CGCCTACTATGTAAATTACGATTCGAT 59.516 37.037 13.95 0.00 0.00 3.59
733 736 6.798476 CGCCTACTATGTAAATTACGATTCGA 59.202 38.462 13.95 0.00 0.00 3.71
734 737 6.580041 ACGCCTACTATGTAAATTACGATTCG 59.420 38.462 4.14 4.14 0.00 3.34
735 738 7.592533 TGACGCCTACTATGTAAATTACGATTC 59.407 37.037 0.00 0.00 0.00 2.52
736 739 7.428020 TGACGCCTACTATGTAAATTACGATT 58.572 34.615 0.00 0.00 0.00 3.34
737 740 6.973843 TGACGCCTACTATGTAAATTACGAT 58.026 36.000 0.00 0.00 0.00 3.73
738 741 6.375945 TGACGCCTACTATGTAAATTACGA 57.624 37.500 0.00 0.00 0.00 3.43
739 742 6.914215 TCTTGACGCCTACTATGTAAATTACG 59.086 38.462 0.00 0.00 0.00 3.18
740 743 8.638685 TTCTTGACGCCTACTATGTAAATTAC 57.361 34.615 0.00 0.00 0.00 1.89
741 744 9.656040 TTTTCTTGACGCCTACTATGTAAATTA 57.344 29.630 0.00 0.00 0.00 1.40
742 745 8.556213 TTTTCTTGACGCCTACTATGTAAATT 57.444 30.769 0.00 0.00 0.00 1.82
743 746 8.556213 TTTTTCTTGACGCCTACTATGTAAAT 57.444 30.769 0.00 0.00 0.00 1.40
744 747 7.966246 TTTTTCTTGACGCCTACTATGTAAA 57.034 32.000 0.00 0.00 0.00 2.01
769 772 3.792124 GCAGGCGCGCTATATTTCTTTTT 60.792 43.478 32.29 0.00 0.00 1.94
770 773 2.287009 GCAGGCGCGCTATATTTCTTTT 60.287 45.455 32.29 0.00 0.00 2.27
771 774 1.264288 GCAGGCGCGCTATATTTCTTT 59.736 47.619 32.29 0.93 0.00 2.52
772 775 0.868406 GCAGGCGCGCTATATTTCTT 59.132 50.000 32.29 2.55 0.00 2.52
773 776 0.034059 AGCAGGCGCGCTATATTTCT 59.966 50.000 32.29 14.85 45.49 2.52
774 777 0.164647 CAGCAGGCGCGCTATATTTC 59.835 55.000 32.29 12.47 45.49 2.17
775 778 1.230635 CCAGCAGGCGCGCTATATTT 61.231 55.000 32.29 9.28 45.49 1.40
776 779 1.669115 CCAGCAGGCGCGCTATATT 60.669 57.895 32.29 10.43 45.49 1.28
777 780 2.047844 CCAGCAGGCGCGCTATAT 60.048 61.111 32.29 12.41 45.49 0.86
778 781 3.212906 CTCCAGCAGGCGCGCTATA 62.213 63.158 32.29 8.72 45.49 1.31
779 782 4.598894 CTCCAGCAGGCGCGCTAT 62.599 66.667 32.29 17.65 45.49 2.97
799 802 2.592623 AAAATAAAGCGCGCCCGAGC 62.593 55.000 30.33 8.33 41.21 5.03
800 803 0.861450 CAAAATAAAGCGCGCCCGAG 60.861 55.000 30.33 6.01 36.29 4.63
801 804 1.135731 CAAAATAAAGCGCGCCCGA 59.864 52.632 30.33 13.77 36.29 5.14
802 805 2.504653 GCAAAATAAAGCGCGCCCG 61.505 57.895 30.33 8.37 37.57 6.13
803 806 3.383861 GCAAAATAAAGCGCGCCC 58.616 55.556 30.33 0.16 0.00 6.13
809 812 2.164663 GGCCGCCGCAAAATAAAGC 61.165 57.895 0.00 0.00 36.38 3.51
810 813 1.075979 GTGGCCGCCGCAAAATAAAG 61.076 55.000 18.36 0.00 36.38 1.85
811 814 1.080434 GTGGCCGCCGCAAAATAAA 60.080 52.632 18.36 0.00 36.38 1.40
812 815 1.974343 AGTGGCCGCCGCAAAATAA 60.974 52.632 24.63 0.00 36.32 1.40
813 816 2.360600 AGTGGCCGCCGCAAAATA 60.361 55.556 24.63 0.00 36.32 1.40
814 817 4.054825 CAGTGGCCGCCGCAAAAT 62.055 61.111 24.63 0.81 36.32 1.82
826 829 3.357079 GTGCGTTGGCTCCAGTGG 61.357 66.667 1.40 1.40 40.82 4.00
827 830 3.716006 CGTGCGTTGGCTCCAGTG 61.716 66.667 0.00 0.00 40.82 3.66
828 831 4.988598 CCGTGCGTTGGCTCCAGT 62.989 66.667 0.00 0.00 40.82 4.00
850 853 4.395583 GTGAGCCAGCTTGTGCGC 62.396 66.667 0.00 0.00 45.42 6.09
851 854 3.730761 GGTGAGCCAGCTTGTGCG 61.731 66.667 0.00 0.00 45.42 5.34
852 855 3.368571 GGGTGAGCCAGCTTGTGC 61.369 66.667 0.00 0.00 40.05 4.57
853 856 3.052082 CGGGTGAGCCAGCTTGTG 61.052 66.667 0.08 0.00 36.17 3.33
854 857 4.335647 CCGGGTGAGCCAGCTTGT 62.336 66.667 0.08 0.00 36.17 3.16
861 864 1.682451 TATACAGTGCCGGGTGAGCC 61.682 60.000 2.18 0.00 0.00 4.70
862 865 0.529992 GTATACAGTGCCGGGTGAGC 60.530 60.000 2.18 0.00 0.00 4.26
863 866 1.112113 AGTATACAGTGCCGGGTGAG 58.888 55.000 2.18 0.00 0.00 3.51
864 867 0.821517 CAGTATACAGTGCCGGGTGA 59.178 55.000 2.18 0.00 0.00 4.02
865 868 0.821517 TCAGTATACAGTGCCGGGTG 59.178 55.000 2.18 0.00 0.00 4.61
866 869 1.789523 ATCAGTATACAGTGCCGGGT 58.210 50.000 2.18 0.00 0.00 5.28
867 870 2.910688 AATCAGTATACAGTGCCGGG 57.089 50.000 2.18 0.00 0.00 5.73
868 871 5.277345 GCTAAAAATCAGTATACAGTGCCGG 60.277 44.000 5.50 0.00 0.00 6.13
869 872 5.293324 TGCTAAAAATCAGTATACAGTGCCG 59.707 40.000 5.50 0.00 0.00 5.69
870 873 6.487103 GTGCTAAAAATCAGTATACAGTGCC 58.513 40.000 5.50 0.00 0.00 5.01
871 874 6.185399 CGTGCTAAAAATCAGTATACAGTGC 58.815 40.000 5.50 0.00 0.00 4.40
872 875 6.185399 GCGTGCTAAAAATCAGTATACAGTG 58.815 40.000 5.50 0.00 0.00 3.66
873 876 5.293569 GGCGTGCTAAAAATCAGTATACAGT 59.706 40.000 5.50 0.00 0.00 3.55
874 877 5.556382 CGGCGTGCTAAAAATCAGTATACAG 60.556 44.000 5.50 0.00 0.00 2.74
875 878 4.269123 CGGCGTGCTAAAAATCAGTATACA 59.731 41.667 5.50 0.00 0.00 2.29
876 879 4.758561 CGGCGTGCTAAAAATCAGTATAC 58.241 43.478 0.00 0.00 0.00 1.47
877 880 3.246699 GCGGCGTGCTAAAAATCAGTATA 59.753 43.478 9.37 0.00 41.73 1.47
878 881 2.031683 GCGGCGTGCTAAAAATCAGTAT 59.968 45.455 9.37 0.00 41.73 2.12
879 882 1.395608 GCGGCGTGCTAAAAATCAGTA 59.604 47.619 9.37 0.00 41.73 2.74
880 883 0.168128 GCGGCGTGCTAAAAATCAGT 59.832 50.000 9.37 0.00 41.73 3.41
881 884 0.857311 CGCGGCGTGCTAAAAATCAG 60.857 55.000 15.36 0.00 43.27 2.90
882 885 1.133664 CGCGGCGTGCTAAAAATCA 59.866 52.632 15.36 0.00 43.27 2.57
883 886 2.214948 GCGCGGCGTGCTAAAAATC 61.215 57.895 35.35 6.43 43.27 2.17
884 887 2.202427 GCGCGGCGTGCTAAAAAT 60.202 55.556 35.35 0.00 43.27 1.82
885 888 2.465097 AATGCGCGGCGTGCTAAAAA 62.465 50.000 39.83 23.93 43.27 1.94
886 889 2.972144 AATGCGCGGCGTGCTAAAA 61.972 52.632 39.83 24.30 43.27 1.52
887 890 3.427425 AATGCGCGGCGTGCTAAA 61.427 55.556 39.83 24.67 43.27 1.85
888 891 4.159295 CAATGCGCGGCGTGCTAA 62.159 61.111 39.83 25.39 43.27 3.09
899 902 4.781959 CAACAGCGGCCCAATGCG 62.782 66.667 0.00 0.00 42.61 4.73
900 903 4.440127 CCAACAGCGGCCCAATGC 62.440 66.667 0.00 0.00 40.16 3.56
901 904 2.676121 TCCAACAGCGGCCCAATG 60.676 61.111 0.00 0.00 0.00 2.82
902 905 2.215451 ATCTCCAACAGCGGCCCAAT 62.215 55.000 0.00 0.00 0.00 3.16
903 906 2.905996 ATCTCCAACAGCGGCCCAA 61.906 57.895 0.00 0.00 0.00 4.12
904 907 3.329889 ATCTCCAACAGCGGCCCA 61.330 61.111 0.00 0.00 0.00 5.36
905 908 2.825836 CATCTCCAACAGCGGCCC 60.826 66.667 0.00 0.00 0.00 5.80
906 909 2.252072 TACCATCTCCAACAGCGGCC 62.252 60.000 0.00 0.00 0.00 6.13
907 910 0.179045 ATACCATCTCCAACAGCGGC 60.179 55.000 0.00 0.00 0.00 6.53
908 911 3.069586 TCTTATACCATCTCCAACAGCGG 59.930 47.826 0.00 0.00 0.00 5.52
909 912 4.051922 GTCTTATACCATCTCCAACAGCG 58.948 47.826 0.00 0.00 0.00 5.18
910 913 4.051922 CGTCTTATACCATCTCCAACAGC 58.948 47.826 0.00 0.00 0.00 4.40
911 914 4.051922 GCGTCTTATACCATCTCCAACAG 58.948 47.826 0.00 0.00 0.00 3.16
912 915 3.704566 AGCGTCTTATACCATCTCCAACA 59.295 43.478 0.00 0.00 0.00 3.33
913 916 4.323553 AGCGTCTTATACCATCTCCAAC 57.676 45.455 0.00 0.00 0.00 3.77
914 917 6.474140 TTTAGCGTCTTATACCATCTCCAA 57.526 37.500 0.00 0.00 0.00 3.53
915 918 6.474140 TTTTAGCGTCTTATACCATCTCCA 57.526 37.500 0.00 0.00 0.00 3.86
940 943 4.863152 AGTGTAAAACGCTAACAAACGT 57.137 36.364 0.00 0.00 46.07 3.99
941 944 7.825627 ATAAAGTGTAAAACGCTAACAAACG 57.174 32.000 0.00 0.00 38.11 3.60
987 990 9.696917 CCTTTTTGTAGCATCTTACATCTTTTT 57.303 29.630 0.00 0.00 33.81 1.94
988 991 8.860088 ACCTTTTTGTAGCATCTTACATCTTTT 58.140 29.630 0.00 0.00 33.81 2.27
989 992 8.409358 ACCTTTTTGTAGCATCTTACATCTTT 57.591 30.769 0.00 0.00 33.81 2.52
990 993 8.409358 AACCTTTTTGTAGCATCTTACATCTT 57.591 30.769 0.00 0.00 33.81 2.40
991 994 7.121315 GGAACCTTTTTGTAGCATCTTACATCT 59.879 37.037 0.00 0.00 33.81 2.90
992 995 7.251281 GGAACCTTTTTGTAGCATCTTACATC 58.749 38.462 0.00 0.00 33.81 3.06
993 996 7.158099 GGAACCTTTTTGTAGCATCTTACAT 57.842 36.000 0.00 0.00 33.81 2.29
994 997 6.569179 GGAACCTTTTTGTAGCATCTTACA 57.431 37.500 0.00 0.00 0.00 2.41
1828 1926 1.012086 CGATGGTCCTGAAGCACATG 58.988 55.000 0.00 0.00 38.41 3.21
2378 3932 4.768583 AGCAGCAAAAGGAAAAATTGACA 58.231 34.783 0.00 0.00 0.00 3.58
2467 4214 8.974238 TCCGTCCTGAATTACTTTCTTAGATTA 58.026 33.333 0.00 0.00 35.23 1.75
2891 5072 5.960811 TGGACTCACTTCAGGAAGATATTCT 59.039 40.000 15.51 0.00 40.79 2.40
3021 5207 8.119629 ATTCGGATGGAAAACCATCGATAGAAA 61.120 37.037 18.77 9.55 45.24 2.52
3443 15315 8.496707 AAAGTTGAGAAATTGACTGCATTTTT 57.503 26.923 0.00 0.00 30.24 1.94
3444 15316 9.768662 ATAAAGTTGAGAAATTGACTGCATTTT 57.231 25.926 0.00 0.00 32.11 1.82
3576 15455 8.052748 AGCATTTGACCACTATTTCTATTACCA 58.947 33.333 0.00 0.00 0.00 3.25
3626 15505 5.782047 TGGATGTCATTTTAACCTTTGCAG 58.218 37.500 0.00 0.00 0.00 4.41
3715 15599 9.952030 TCTTACACTATCATGGTGTCAAAAATA 57.048 29.630 10.53 0.00 45.23 1.40
3914 15803 7.414540 CCAATCAGTTAGCTCACAAAGAATACC 60.415 40.741 0.03 0.00 0.00 2.73
3943 15832 7.882791 CCTGGACATACCTGCATAATAACAATA 59.117 37.037 0.00 0.00 39.86 1.90
3944 15833 6.716628 CCTGGACATACCTGCATAATAACAAT 59.283 38.462 0.00 0.00 39.86 2.71
3945 15834 6.061441 CCTGGACATACCTGCATAATAACAA 58.939 40.000 0.00 0.00 39.86 2.83
3986 15875 0.974383 ACAGAAGAACCTACACCGGG 59.026 55.000 6.32 0.00 0.00 5.73
3987 15876 2.833631 AACAGAAGAACCTACACCGG 57.166 50.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.