Multiple sequence alignment - TraesCS3D01G437200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G437200 chr3D 100.000 4522 0 0 1 4522 548570268 548574789 0.000000e+00 8351.0
1 TraesCS3D01G437200 chr3D 87.292 1023 99 20 2611 3627 548553490 548554487 0.000000e+00 1140.0
2 TraesCS3D01G437200 chr3D 85.824 261 27 4 2985 3235 489412900 489413160 7.460000e-68 268.0
3 TraesCS3D01G437200 chr3A 94.729 3984 134 26 381 4322 686148930 686152879 0.000000e+00 6124.0
4 TraesCS3D01G437200 chr3A 94.260 331 17 2 1 330 686148598 686148927 5.220000e-139 505.0
5 TraesCS3D01G437200 chr3B 95.127 1375 49 7 801 2162 727325867 727327236 0.000000e+00 2152.0
6 TraesCS3D01G437200 chr3B 95.196 1249 44 8 2685 3922 727330676 727331919 0.000000e+00 1960.0
7 TraesCS3D01G437200 chr3B 85.728 1065 103 27 2611 3654 727158509 727159545 0.000000e+00 1079.0
8 TraesCS3D01G437200 chr3B 89.455 863 54 11 3671 4522 727276314 727277150 0.000000e+00 1055.0
9 TraesCS3D01G437200 chr3B 88.555 699 71 7 2898 3591 727264502 727265196 0.000000e+00 839.0
10 TraesCS3D01G437200 chr3B 95.463 529 14 2 3955 4473 727331919 727332447 0.000000e+00 835.0
11 TraesCS3D01G437200 chr3B 91.136 440 31 3 2177 2609 727330098 727330536 1.400000e-164 590.0
12 TraesCS3D01G437200 chr3B 88.866 476 41 9 3153 3627 727235061 727235525 3.920000e-160 575.0
13 TraesCS3D01G437200 chr3B 92.821 390 24 3 1 386 727325063 727325452 3.050000e-156 562.0
14 TraesCS3D01G437200 chr3B 84.936 551 65 10 2611 3157 727228921 727229457 3.980000e-150 542.0
15 TraesCS3D01G437200 chr3B 90.074 403 24 6 386 782 727325489 727325881 4.040000e-140 508.0
16 TraesCS3D01G437200 chr3B 87.963 216 23 2 3729 3942 727163055 727163269 7.510000e-63 252.0
17 TraesCS3D01G437200 chr3B 89.143 175 19 0 979 1153 727247754 727247928 7.620000e-53 219.0
18 TraesCS3D01G437200 chr3B 92.241 116 5 2 3555 3668 727265195 727265308 1.300000e-35 161.0
19 TraesCS3D01G437200 chr3B 79.688 128 23 3 1471 1598 726510328 726510452 6.230000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G437200 chr3D 548570268 548574789 4521 False 8351.000000 8351 100.000000 1 4522 1 chr3D.!!$F3 4521
1 TraesCS3D01G437200 chr3D 548553490 548554487 997 False 1140.000000 1140 87.292000 2611 3627 1 chr3D.!!$F2 1016
2 TraesCS3D01G437200 chr3A 686148598 686152879 4281 False 3314.500000 6124 94.494500 1 4322 2 chr3A.!!$F1 4321
3 TraesCS3D01G437200 chr3B 727325063 727332447 7384 False 1101.166667 2152 93.302833 1 4473 6 chr3B.!!$F8 4472
4 TraesCS3D01G437200 chr3B 727276314 727277150 836 False 1055.000000 1055 89.455000 3671 4522 1 chr3B.!!$F5 851
5 TraesCS3D01G437200 chr3B 727158509 727163269 4760 False 665.500000 1079 86.845500 2611 3942 2 chr3B.!!$F6 1331
6 TraesCS3D01G437200 chr3B 727228921 727229457 536 False 542.000000 542 84.936000 2611 3157 1 chr3B.!!$F2 546
7 TraesCS3D01G437200 chr3B 727264502 727265308 806 False 500.000000 839 90.398000 2898 3668 2 chr3B.!!$F7 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 67 0.541863 CCCTGCCTAGTACCAACCAG 59.458 60.0 0.00 0.00 0.00 4.00 F
482 524 0.865218 CGTGAGCATCGAGACTCAGC 60.865 60.0 17.76 12.49 43.30 4.26 F
916 970 0.914417 TCGCATCCCCTCCCTTCTTT 60.914 55.0 0.00 0.00 0.00 2.52 F
1260 1314 0.966920 ATTTCGGGACCGCTATCGAT 59.033 50.0 5.75 2.16 39.59 3.59 F
2561 5485 0.534203 ACGTCCGAACACTTGCCAAT 60.534 50.0 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 1479 3.119245 GGCTAAGAATATGCATGCATGGG 60.119 47.826 37.43 20.62 37.82 4.00 R
2137 2206 0.388649 AGCGTTGAGTCACCGACATC 60.389 55.000 14.84 0.00 34.60 3.06 R
2432 5349 0.686769 ACGGGTGTAGGAGATGACCC 60.687 60.000 0.00 0.00 44.19 4.46 R
2737 5781 0.821711 TAGTTGTGTTGCAGGTGGCC 60.822 55.000 0.00 0.00 43.89 5.36 R
4353 10909 0.392336 GCACCCCATTGCTTTGAACA 59.608 50.000 0.00 0.00 39.59 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.181436 CCAACCTATCTCCTAGTCGGGTA 60.181 52.174 0.00 0.00 0.00 3.69
65 67 0.541863 CCCTGCCTAGTACCAACCAG 59.458 60.000 0.00 0.00 0.00 4.00
71 73 1.899814 CCTAGTACCAACCAGCAGACA 59.100 52.381 0.00 0.00 0.00 3.41
85 87 1.489481 CAGACAGGCAGACATAGGGA 58.511 55.000 0.00 0.00 0.00 4.20
365 370 6.295719 TGAAATGGAGTAAGTACTTCCTCC 57.704 41.667 30.72 30.72 43.53 4.30
367 372 3.446442 TGGAGTAAGTACTTCCTCCGT 57.554 47.619 30.95 4.71 45.42 4.69
371 376 2.042162 AGTAAGTACTTCCTCCGTCCCA 59.958 50.000 12.39 0.00 31.13 4.37
378 383 3.951663 ACTTCCTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
379 384 3.279434 CTTCCTCCGTCCCAAAATAAGG 58.721 50.000 0.00 0.00 0.00 2.69
482 524 0.865218 CGTGAGCATCGAGACTCAGC 60.865 60.000 17.76 12.49 43.30 4.26
586 635 6.849151 TGCCTCCTGTCTCAATATAGTACTA 58.151 40.000 4.77 4.77 0.00 1.82
587 636 6.715718 TGCCTCCTGTCTCAATATAGTACTAC 59.284 42.308 4.31 0.00 0.00 2.73
588 637 6.943718 GCCTCCTGTCTCAATATAGTACTACT 59.056 42.308 4.31 0.00 0.00 2.57
589 638 7.120138 GCCTCCTGTCTCAATATAGTACTACTC 59.880 44.444 4.31 0.00 0.00 2.59
657 706 3.139077 CCCATAATTACCCTGAAGCGTC 58.861 50.000 0.00 0.00 0.00 5.19
785 839 6.183360 ACCTCGAAGCATATAGTTGGTGTATT 60.183 38.462 0.00 0.00 0.00 1.89
787 841 5.918576 TCGAAGCATATAGTTGGTGTATTCG 59.081 40.000 0.00 0.00 36.47 3.34
916 970 0.914417 TCGCATCCCCTCCCTTCTTT 60.914 55.000 0.00 0.00 0.00 2.52
1122 1176 1.415672 AAGGCCCTCGACAGAACCAA 61.416 55.000 0.00 0.00 0.00 3.67
1218 1272 2.870372 GGCCACAACGCAGACATC 59.130 61.111 0.00 0.00 0.00 3.06
1260 1314 0.966920 ATTTCGGGACCGCTATCGAT 59.033 50.000 5.75 2.16 39.59 3.59
1466 1520 2.355756 GCCTTCTCATTAATCTTGCGCA 59.644 45.455 5.66 5.66 0.00 6.09
1628 1682 3.990469 GAGATCACGCTTCTTGTTTCAGA 59.010 43.478 0.00 0.00 0.00 3.27
1822 1876 8.547481 TCAATATGGTCTCCAAGTATCACTTA 57.453 34.615 0.00 0.00 36.03 2.24
2095 2163 9.166222 TGACCCTATCATGGTTAGTATACATTT 57.834 33.333 5.50 0.00 35.85 2.32
2128 2197 7.598493 GCCTTTTATGCAAAGAATGTACAAGAA 59.402 33.333 0.00 0.00 44.40 2.52
2137 2206 7.742963 GCAAAGAATGTACAAGAAATGCAAATG 59.257 33.333 16.59 0.00 0.00 2.32
2166 2235 3.000724 GTGACTCAACGCTAGCATGAATC 59.999 47.826 16.45 17.02 0.00 2.52
2216 5132 2.900716 TGTGAGAATGTGGACGTTGA 57.099 45.000 0.00 0.00 0.00 3.18
2231 5147 2.161012 ACGTTGACATACAGACGATCGT 59.839 45.455 22.97 22.97 36.91 3.73
2236 5152 5.744666 TGACATACAGACGATCGTATTCA 57.255 39.130 22.79 15.02 0.00 2.57
2383 5300 1.202855 AGCATGAGACAAAGTGCACCT 60.203 47.619 14.63 2.16 39.94 4.00
2385 5302 1.068748 CATGAGACAAAGTGCACCTGC 60.069 52.381 14.63 7.86 42.50 4.85
2404 5321 1.481772 GCCAAGCATGCTCCCAAATTA 59.518 47.619 22.93 0.00 0.00 1.40
2432 5349 6.640499 TGCTCTGGAAATAAAACAACATTTCG 59.360 34.615 0.00 0.00 40.50 3.46
2501 5425 5.163258 GGACTCTCCATCTCAAACACCATAT 60.163 44.000 0.00 0.00 36.28 1.78
2517 5441 3.194755 ACCATATATCTCGCGGCATAACA 59.805 43.478 6.13 0.00 0.00 2.41
2520 5444 3.592898 ATATCTCGCGGCATAACATCA 57.407 42.857 6.13 0.00 0.00 3.07
2541 5465 3.684788 CACCACATTTAGAGGAAGTTCCG 59.315 47.826 16.31 2.84 42.75 4.30
2561 5485 0.534203 ACGTCCGAACACTTGCCAAT 60.534 50.000 0.00 0.00 0.00 3.16
2586 5510 4.812626 GCAGGAATTTTGCCCATTCTATTG 59.187 41.667 4.94 0.00 35.54 1.90
2651 5688 3.799281 TGACTTGGCAAACAGGAAAAG 57.201 42.857 0.00 0.00 0.00 2.27
2694 5736 3.350219 ACCAGATTTACATTGTCGCCT 57.650 42.857 0.00 0.00 0.00 5.52
2712 5754 1.202806 CCTGAACACTTGCCTTCTCCA 60.203 52.381 0.00 0.00 0.00 3.86
2737 5781 3.054287 TGAGGTCCTCCACTAGACTACAG 60.054 52.174 16.60 0.00 35.89 2.74
3007 6058 4.897076 TCCTTCGCCTATATTTGTAGGTCA 59.103 41.667 2.81 0.00 42.68 4.02
3299 6351 4.479158 TGTAGATCACTTTTGCCCCTTTT 58.521 39.130 0.00 0.00 0.00 2.27
3324 6376 2.249844 TGTGAAGGAAGTTTCGGGAC 57.750 50.000 0.00 0.00 0.00 4.46
3372 6424 4.123506 TGTTGTGACATCGCTTACTTTCA 58.876 39.130 0.00 0.00 0.00 2.69
3497 6549 4.024809 GGAAGACTTGTTAATGCTATCGGC 60.025 45.833 0.00 0.00 42.22 5.54
3519 6571 3.059188 CGTTTATGTGCGTCCTTCTGTTT 60.059 43.478 0.00 0.00 0.00 2.83
3528 6580 8.325421 TGTGCGTCCTTCTGTTTAAAATTATA 57.675 30.769 0.00 0.00 0.00 0.98
3591 6689 1.758280 CTGGCATGTTATGGGTTGCAT 59.242 47.619 0.00 0.00 36.82 3.96
3603 6701 1.203052 GGGTTGCATTGGTCTCATGTG 59.797 52.381 0.00 0.00 0.00 3.21
3604 6702 1.888512 GGTTGCATTGGTCTCATGTGT 59.111 47.619 0.00 0.00 0.00 3.72
3654 6758 6.129300 GGTTTCGTGCATTTGTTACATGTTAC 60.129 38.462 2.30 5.71 0.00 2.50
3668 6772 8.044309 TGTTACATGTTACATGTATGGCTACTT 58.956 33.333 30.78 10.16 34.83 2.24
3672 6783 5.436175 TGTTACATGTATGGCTACTTGCAT 58.564 37.500 6.36 0.00 45.15 3.96
4125 10672 6.183361 ACCAAACTGGAAACATGAAAATGGAT 60.183 34.615 0.00 0.00 40.96 3.41
4131 10678 6.824553 TGGAAACATGAAAATGGATCAACAA 58.175 32.000 0.00 0.00 33.40 2.83
4159 10706 9.753674 TTCATTCCTCTGATAAACCTGTAAAAT 57.246 29.630 0.00 0.00 0.00 1.82
4213 10760 3.436577 AGTCCCTCTAGAAACTCGTGA 57.563 47.619 0.00 0.00 0.00 4.35
4223 10770 2.632996 AGAAACTCGTGATTCACCTCCA 59.367 45.455 11.12 0.00 0.00 3.86
4306 10862 8.633408 CGAATTTTTGACTTTCATTTAGCTCAG 58.367 33.333 0.00 0.00 0.00 3.35
4353 10909 4.166725 TGATCTTGGATTCATGCTTAGGGT 59.833 41.667 0.00 0.00 0.00 4.34
4491 11049 3.548745 TGTCCACAATGCATCTCCTAG 57.451 47.619 0.00 0.00 0.00 3.02
4492 11050 3.106827 TGTCCACAATGCATCTCCTAGA 58.893 45.455 0.00 0.00 0.00 2.43
4506 11064 4.999310 TCTCCTAGACTCCTGTTTCTGAA 58.001 43.478 0.00 0.00 0.00 3.02
4513 11071 8.260818 CCTAGACTCCTGTTTCTGAATAAATCA 58.739 37.037 0.00 0.00 36.38 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.614413 CCGACTAGGAGATAGGTTGGC 59.386 57.143 0.00 0.00 45.00 4.52
10 11 2.946785 ACCCGACTAGGAGATAGGTTG 58.053 52.381 0.00 0.00 45.00 3.77
31 32 1.133853 GCAGGGAATCTCAATGCCTCT 60.134 52.381 0.00 0.00 36.34 3.69
65 67 0.179062 CCCTATGTCTGCCTGTCTGC 60.179 60.000 0.00 0.00 0.00 4.26
71 73 2.783379 TCATCTCCCTATGTCTGCCT 57.217 50.000 0.00 0.00 0.00 4.75
85 87 2.747467 CGTCAAGCCCATGGATTCATCT 60.747 50.000 15.22 0.00 0.00 2.90
371 376 6.605594 TGTCAACTTTGTGAGACCCTTATTTT 59.394 34.615 0.00 0.00 0.00 1.82
378 383 3.694566 AGTTTGTCAACTTTGTGAGACCC 59.305 43.478 0.00 0.00 40.66 4.46
379 384 4.965119 AGTTTGTCAACTTTGTGAGACC 57.035 40.909 0.00 0.00 40.66 3.85
560 603 2.926778 ATATTGAGACAGGAGGCAGC 57.073 50.000 0.00 0.00 0.00 5.25
795 849 4.830046 TCTCCACCAACTATATGCTCTCTC 59.170 45.833 0.00 0.00 0.00 3.20
916 970 3.075005 GAGGGAGCCGCAGTGGTA 61.075 66.667 0.89 0.00 41.21 3.25
1122 1176 7.309194 GGGAGCTGTAAGTTTGTCATAATTTGT 60.309 37.037 0.00 0.00 35.30 2.83
1260 1314 6.146184 CGAAAGAGTGAAAATAGTCTGCTTCA 59.854 38.462 0.00 0.00 30.94 3.02
1360 1414 5.585844 GCAATATCAACAATGGGGAAAAAGG 59.414 40.000 0.00 0.00 0.00 3.11
1425 1479 3.119245 GGCTAAGAATATGCATGCATGGG 60.119 47.826 37.43 20.62 37.82 4.00
1466 1520 5.398012 GCTGGATCCCTTGAACCTAAGTATT 60.398 44.000 9.90 0.00 34.62 1.89
1874 1928 9.817809 AGTAATGTGTATGAACGTATCTCAATT 57.182 29.630 0.00 0.00 0.00 2.32
1875 1929 9.817809 AAGTAATGTGTATGAACGTATCTCAAT 57.182 29.630 0.00 0.00 0.00 2.57
1884 1949 8.964420 AAATTTGGAAGTAATGTGTATGAACG 57.036 30.769 0.00 0.00 0.00 3.95
1979 2044 9.463443 ACAATCAAACTTGTAAAATCTAACAGC 57.537 29.630 0.00 0.00 37.58 4.40
2095 2163 1.252175 TTGCATAAAAGGCAGCGGAA 58.748 45.000 0.00 0.00 43.05 4.30
2128 2197 3.084039 AGTCACCGACATCATTTGCATT 58.916 40.909 0.00 0.00 34.60 3.56
2137 2206 0.388649 AGCGTTGAGTCACCGACATC 60.389 55.000 14.84 0.00 34.60 3.06
2166 2235 7.255569 TGATACATTCAAAGTCAGTAGTACGG 58.744 38.462 0.00 0.00 0.00 4.02
2194 5110 1.512926 ACGTCCACATTCTCACAAGC 58.487 50.000 0.00 0.00 0.00 4.01
2216 5132 4.276183 AGCTGAATACGATCGTCTGTATGT 59.724 41.667 26.48 3.24 31.89 2.29
2236 5152 8.910351 AAGTTATCTCTCTGTTGTTTTTAGCT 57.090 30.769 0.00 0.00 0.00 3.32
2311 5227 2.814336 AGGCAAAACACTCGAAGGATTC 59.186 45.455 0.00 0.00 43.09 2.52
2378 5295 3.352338 GAGCATGCTTGGCAGGTGC 62.352 63.158 23.61 1.03 43.65 5.01
2383 5300 0.905809 ATTTGGGAGCATGCTTGGCA 60.906 50.000 23.61 5.83 44.86 4.92
2385 5302 3.891422 TTAATTTGGGAGCATGCTTGG 57.109 42.857 23.61 0.00 0.00 3.61
2404 5321 8.907222 AATGTTGTTTTATTTCCAGAGCATTT 57.093 26.923 0.00 0.00 0.00 2.32
2432 5349 0.686769 ACGGGTGTAGGAGATGACCC 60.687 60.000 0.00 0.00 44.19 4.46
2501 5425 2.609491 GGTGATGTTATGCCGCGAGATA 60.609 50.000 8.23 0.00 0.00 1.98
2517 5441 5.501156 GGAACTTCCTCTAAATGTGGTGAT 58.499 41.667 0.00 0.00 32.53 3.06
2520 5444 3.581332 TCGGAACTTCCTCTAAATGTGGT 59.419 43.478 6.25 0.00 33.30 4.16
2541 5465 1.155424 TTGGCAAGTGTTCGGACGTC 61.155 55.000 7.13 7.13 0.00 4.34
2568 5492 9.425248 TTCTATCTCAATAGAATGGGCAAAATT 57.575 29.630 4.22 0.00 45.38 1.82
2586 5510 5.513141 GCATTGTTTTCGCCTTTTCTATCTC 59.487 40.000 0.00 0.00 0.00 2.75
2627 5664 3.500448 TCCTGTTTGCCAAGTCATGTA 57.500 42.857 0.00 0.00 0.00 2.29
2628 5665 2.363306 TCCTGTTTGCCAAGTCATGT 57.637 45.000 0.00 0.00 0.00 3.21
2629 5666 3.731652 TTTCCTGTTTGCCAAGTCATG 57.268 42.857 0.00 0.00 0.00 3.07
2630 5667 3.960102 TCTTTTCCTGTTTGCCAAGTCAT 59.040 39.130 0.00 0.00 0.00 3.06
2694 5736 2.158623 ACATGGAGAAGGCAAGTGTTCA 60.159 45.455 0.00 0.00 0.00 3.18
2712 5754 2.313342 AGTCTAGTGGAGGACCTCACAT 59.687 50.000 23.06 9.94 37.04 3.21
2737 5781 0.821711 TAGTTGTGTTGCAGGTGGCC 60.822 55.000 0.00 0.00 43.89 5.36
3299 6351 4.065088 CCGAAACTTCCTTCACAATCTCA 58.935 43.478 0.00 0.00 0.00 3.27
3324 6376 0.955905 CCACCAAAAGTACCGGTTGG 59.044 55.000 15.04 17.37 46.05 3.77
3497 6549 2.066262 ACAGAAGGACGCACATAAACG 58.934 47.619 0.00 0.00 0.00 3.60
3528 6580 9.174166 GGTTATTCTTGACCAATGTATGTACTT 57.826 33.333 0.00 0.00 35.95 2.24
3542 6599 4.633565 CCAAGAGCTCTGGTTATTCTTGAC 59.366 45.833 19.06 0.00 44.58 3.18
3591 6689 7.038587 ACCAAGTAGTAATACACATGAGACCAA 60.039 37.037 0.00 0.00 0.00 3.67
3604 6702 9.743581 CCCTAAAAGGAAAACCAAGTAGTAATA 57.256 33.333 0.00 0.00 37.67 0.98
3654 6758 2.619646 TGCATGCAAGTAGCCATACATG 59.380 45.455 20.30 0.00 44.83 3.21
3672 6783 2.658268 CACACGCGTGAGACTGCA 60.658 61.111 42.94 0.00 46.80 4.41
3898 10445 9.773328 CACATATCTATGTAACTTGTTTTGGTG 57.227 33.333 2.65 0.00 44.57 4.17
4125 10672 7.174946 GGTTTATCAGAGGAATGAAGTTGTTGA 59.825 37.037 0.00 0.00 31.76 3.18
4131 10678 6.380079 ACAGGTTTATCAGAGGAATGAAGT 57.620 37.500 0.00 0.00 31.76 3.01
4213 10760 3.392616 GGATATGGACAGTGGAGGTGAAT 59.607 47.826 0.00 0.00 0.00 2.57
4223 10770 1.906574 ACGGTTGTGGATATGGACAGT 59.093 47.619 0.00 0.00 0.00 3.55
4306 10862 9.445878 TCAAGATCTATTGATATTGCCATCTTC 57.554 33.333 16.50 0.00 46.00 2.87
4353 10909 0.392336 GCACCCCATTGCTTTGAACA 59.608 50.000 0.00 0.00 39.59 3.18
4477 11035 3.387374 ACAGGAGTCTAGGAGATGCATTG 59.613 47.826 0.00 0.00 0.00 2.82
4491 11049 8.498054 TGATGATTTATTCAGAAACAGGAGTC 57.502 34.615 0.00 0.00 37.89 3.36
4492 11050 9.118300 GATGATGATTTATTCAGAAACAGGAGT 57.882 33.333 0.00 0.00 37.89 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.