AutoCloner

Multiple sequence alignment - TraesCS3D01G437200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G437200	chr3D	100.000	4522	0	0	1	4522	548570268	548574789	0.000000e+00	8351.0
1	TraesCS3D01G437200	chr3D	87.292	1023	99	20	2611	3627	548553490	548554487	0.000000e+00	1140.0
2	TraesCS3D01G437200	chr3D	85.824	261	27	4	2985	3235	489412900	489413160	7.460000e-68	268.0
3	TraesCS3D01G437200	chr3A	94.729	3984	134	26	381	4322	686148930	686152879	0.000000e+00	6124.0
4	TraesCS3D01G437200	chr3A	94.260	331	17	2	1	330	686148598	686148927	5.220000e-139	505.0
5	TraesCS3D01G437200	chr3B	95.127	1375	49	7	801	2162	727325867	727327236	0.000000e+00	2152.0
6	TraesCS3D01G437200	chr3B	95.196	1249	44	8	2685	3922	727330676	727331919	0.000000e+00	1960.0
7	TraesCS3D01G437200	chr3B	85.728	1065	103	27	2611	3654	727158509	727159545	0.000000e+00	1079.0
8	TraesCS3D01G437200	chr3B	89.455	863	54	11	3671	4522	727276314	727277150	0.000000e+00	1055.0
9	TraesCS3D01G437200	chr3B	88.555	699	71	7	2898	3591	727264502	727265196	0.000000e+00	839.0
10	TraesCS3D01G437200	chr3B	95.463	529	14	2	3955	4473	727331919	727332447	0.000000e+00	835.0
11	TraesCS3D01G437200	chr3B	91.136	440	31	3	2177	2609	727330098	727330536	1.400000e-164	590.0
12	TraesCS3D01G437200	chr3B	88.866	476	41	9	3153	3627	727235061	727235525	3.920000e-160	575.0
13	TraesCS3D01G437200	chr3B	92.821	390	24	3	1	386	727325063	727325452	3.050000e-156	562.0
14	TraesCS3D01G437200	chr3B	84.936	551	65	10	2611	3157	727228921	727229457	3.980000e-150	542.0
15	TraesCS3D01G437200	chr3B	90.074	403	24	6	386	782	727325489	727325881	4.040000e-140	508.0
16	TraesCS3D01G437200	chr3B	87.963	216	23	2	3729	3942	727163055	727163269	7.510000e-63	252.0
17	TraesCS3D01G437200	chr3B	89.143	175	19	0	979	1153	727247754	727247928	7.620000e-53	219.0
18	TraesCS3D01G437200	chr3B	92.241	116	5	2	3555	3668	727265195	727265308	1.300000e-35	161.0
19	TraesCS3D01G437200	chr3B	79.688	128	23	3	1471	1598	726510328	726510452	6.230000e-14	89.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G437200	chr3D	548570268	548574789	4521	False	8351.000000	8351	100.000000	1	4522	1	chr3D.!!$F3	4521
1	TraesCS3D01G437200	chr3D	548553490	548554487	997	False	1140.000000	1140	87.292000	2611	3627	1	chr3D.!!$F2	1016
2	TraesCS3D01G437200	chr3A	686148598	686152879	4281	False	3314.500000	6124	94.494500	1	4322	2	chr3A.!!$F1	4321
3	TraesCS3D01G437200	chr3B	727325063	727332447	7384	False	1101.166667	2152	93.302833	1	4473	6	chr3B.!!$F8	4472
4	TraesCS3D01G437200	chr3B	727276314	727277150	836	False	1055.000000	1055	89.455000	3671	4522	1	chr3B.!!$F5	851
5	TraesCS3D01G437200	chr3B	727158509	727163269	4760	False	665.500000	1079	86.845500	2611	3942	2	chr3B.!!$F6	1331
6	TraesCS3D01G437200	chr3B	727228921	727229457	536	False	542.000000	542	84.936000	2611	3157	1	chr3B.!!$F2	546
7	TraesCS3D01G437200	chr3B	727264502	727265308	806	False	500.000000	839	90.398000	2898	3668	2	chr3B.!!$F7	770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
65	67	0.541863	CCCTGCCTAGTACCAACCAG	59.458	60.0	0.00	0.00	0.00	4.00	F
482	524	0.865218	CGTGAGCATCGAGACTCAGC	60.865	60.0	17.76	12.49	43.30	4.26	F
916	970	0.914417	TCGCATCCCCTCCCTTCTTT	60.914	55.0	0.00	0.00	0.00	2.52	F
1260	1314	0.966920	ATTTCGGGACCGCTATCGAT	59.033	50.0	5.75	2.16	39.59	3.59	F
2561	5485	0.534203	ACGTCCGAACACTTGCCAAT	60.534	50.0	0.00	0.00	0.00	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1425	1479	3.119245	GGCTAAGAATATGCATGCATGGG	60.119	47.826	37.43	20.62	37.82	4.00	R
2137	2206	0.388649	AGCGTTGAGTCACCGACATC	60.389	55.000	14.84	0.00	34.60	3.06	R
2432	5349	0.686769	ACGGGTGTAGGAGATGACCC	60.687	60.000	0.00	0.00	44.19	4.46	R
2737	5781	0.821711	TAGTTGTGTTGCAGGTGGCC	60.822	55.000	0.00	0.00	43.89	5.36	R
4353	10909	0.392336	GCACCCCATTGCTTTGAACA	59.608	50.000	0.00	0.00	39.59	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	32	3.181436	CCAACCTATCTCCTAGTCGGGTA	60.181	52.174	0.00	0.00	0.00	3.69
65	67	0.541863	CCCTGCCTAGTACCAACCAG	59.458	60.000	0.00	0.00	0.00	4.00
71	73	1.899814	CCTAGTACCAACCAGCAGACA	59.100	52.381	0.00	0.00	0.00	3.41
85	87	1.489481	CAGACAGGCAGACATAGGGA	58.511	55.000	0.00	0.00	0.00	4.20
365	370	6.295719	TGAAATGGAGTAAGTACTTCCTCC	57.704	41.667	30.72	30.72	43.53	4.30
367	372	3.446442	TGGAGTAAGTACTTCCTCCGT	57.554	47.619	30.95	4.71	45.42	4.69
371	376	2.042162	AGTAAGTACTTCCTCCGTCCCA	59.958	50.000	12.39	0.00	31.13	4.37
378	383	3.951663	ACTTCCTCCGTCCCAAAATAAG	58.048	45.455	0.00	0.00	0.00	1.73
379	384	3.279434	CTTCCTCCGTCCCAAAATAAGG	58.721	50.000	0.00	0.00	0.00	2.69
482	524	0.865218	CGTGAGCATCGAGACTCAGC	60.865	60.000	17.76	12.49	43.30	4.26
586	635	6.849151	TGCCTCCTGTCTCAATATAGTACTA	58.151	40.000	4.77	4.77	0.00	1.82
587	636	6.715718	TGCCTCCTGTCTCAATATAGTACTAC	59.284	42.308	4.31	0.00	0.00	2.73
588	637	6.943718	GCCTCCTGTCTCAATATAGTACTACT	59.056	42.308	4.31	0.00	0.00	2.57
589	638	7.120138	GCCTCCTGTCTCAATATAGTACTACTC	59.880	44.444	4.31	0.00	0.00	2.59
657	706	3.139077	CCCATAATTACCCTGAAGCGTC	58.861	50.000	0.00	0.00	0.00	5.19
785	839	6.183360	ACCTCGAAGCATATAGTTGGTGTATT	60.183	38.462	0.00	0.00	0.00	1.89
787	841	5.918576	TCGAAGCATATAGTTGGTGTATTCG	59.081	40.000	0.00	0.00	36.47	3.34
916	970	0.914417	TCGCATCCCCTCCCTTCTTT	60.914	55.000	0.00	0.00	0.00	2.52
1122	1176	1.415672	AAGGCCCTCGACAGAACCAA	61.416	55.000	0.00	0.00	0.00	3.67
1218	1272	2.870372	GGCCACAACGCAGACATC	59.130	61.111	0.00	0.00	0.00	3.06
1260	1314	0.966920	ATTTCGGGACCGCTATCGAT	59.033	50.000	5.75	2.16	39.59	3.59
1466	1520	2.355756	GCCTTCTCATTAATCTTGCGCA	59.644	45.455	5.66	5.66	0.00	6.09
1628	1682	3.990469	GAGATCACGCTTCTTGTTTCAGA	59.010	43.478	0.00	0.00	0.00	3.27
1822	1876	8.547481	TCAATATGGTCTCCAAGTATCACTTA	57.453	34.615	0.00	0.00	36.03	2.24
2095	2163	9.166222	TGACCCTATCATGGTTAGTATACATTT	57.834	33.333	5.50	0.00	35.85	2.32
2128	2197	7.598493	GCCTTTTATGCAAAGAATGTACAAGAA	59.402	33.333	0.00	0.00	44.40	2.52
2137	2206	7.742963	GCAAAGAATGTACAAGAAATGCAAATG	59.257	33.333	16.59	0.00	0.00	2.32
2166	2235	3.000724	GTGACTCAACGCTAGCATGAATC	59.999	47.826	16.45	17.02	0.00	2.52
2216	5132	2.900716	TGTGAGAATGTGGACGTTGA	57.099	45.000	0.00	0.00	0.00	3.18
2231	5147	2.161012	ACGTTGACATACAGACGATCGT	59.839	45.455	22.97	22.97	36.91	3.73
2236	5152	5.744666	TGACATACAGACGATCGTATTCA	57.255	39.130	22.79	15.02	0.00	2.57
2383	5300	1.202855	AGCATGAGACAAAGTGCACCT	60.203	47.619	14.63	2.16	39.94	4.00
2385	5302	1.068748	CATGAGACAAAGTGCACCTGC	60.069	52.381	14.63	7.86	42.50	4.85
2404	5321	1.481772	GCCAAGCATGCTCCCAAATTA	59.518	47.619	22.93	0.00	0.00	1.40
2432	5349	6.640499	TGCTCTGGAAATAAAACAACATTTCG	59.360	34.615	0.00	0.00	40.50	3.46
2501	5425	5.163258	GGACTCTCCATCTCAAACACCATAT	60.163	44.000	0.00	0.00	36.28	1.78
2517	5441	3.194755	ACCATATATCTCGCGGCATAACA	59.805	43.478	6.13	0.00	0.00	2.41
2520	5444	3.592898	ATATCTCGCGGCATAACATCA	57.407	42.857	6.13	0.00	0.00	3.07
2541	5465	3.684788	CACCACATTTAGAGGAAGTTCCG	59.315	47.826	16.31	2.84	42.75	4.30
2561	5485	0.534203	ACGTCCGAACACTTGCCAAT	60.534	50.000	0.00	0.00	0.00	3.16
2586	5510	4.812626	GCAGGAATTTTGCCCATTCTATTG	59.187	41.667	4.94	0.00	35.54	1.90
2651	5688	3.799281	TGACTTGGCAAACAGGAAAAG	57.201	42.857	0.00	0.00	0.00	2.27
2694	5736	3.350219	ACCAGATTTACATTGTCGCCT	57.650	42.857	0.00	0.00	0.00	5.52
2712	5754	1.202806	CCTGAACACTTGCCTTCTCCA	60.203	52.381	0.00	0.00	0.00	3.86
2737	5781	3.054287	TGAGGTCCTCCACTAGACTACAG	60.054	52.174	16.60	0.00	35.89	2.74
3007	6058	4.897076	TCCTTCGCCTATATTTGTAGGTCA	59.103	41.667	2.81	0.00	42.68	4.02
3299	6351	4.479158	TGTAGATCACTTTTGCCCCTTTT	58.521	39.130	0.00	0.00	0.00	2.27
3324	6376	2.249844	TGTGAAGGAAGTTTCGGGAC	57.750	50.000	0.00	0.00	0.00	4.46
3372	6424	4.123506	TGTTGTGACATCGCTTACTTTCA	58.876	39.130	0.00	0.00	0.00	2.69
3497	6549	4.024809	GGAAGACTTGTTAATGCTATCGGC	60.025	45.833	0.00	0.00	42.22	5.54
3519	6571	3.059188	CGTTTATGTGCGTCCTTCTGTTT	60.059	43.478	0.00	0.00	0.00	2.83
3528	6580	8.325421	TGTGCGTCCTTCTGTTTAAAATTATA	57.675	30.769	0.00	0.00	0.00	0.98
3591	6689	1.758280	CTGGCATGTTATGGGTTGCAT	59.242	47.619	0.00	0.00	36.82	3.96
3603	6701	1.203052	GGGTTGCATTGGTCTCATGTG	59.797	52.381	0.00	0.00	0.00	3.21
3604	6702	1.888512	GGTTGCATTGGTCTCATGTGT	59.111	47.619	0.00	0.00	0.00	3.72
3654	6758	6.129300	GGTTTCGTGCATTTGTTACATGTTAC	60.129	38.462	2.30	5.71	0.00	2.50
3668	6772	8.044309	TGTTACATGTTACATGTATGGCTACTT	58.956	33.333	30.78	10.16	34.83	2.24
3672	6783	5.436175	TGTTACATGTATGGCTACTTGCAT	58.564	37.500	6.36	0.00	45.15	3.96
4125	10672	6.183361	ACCAAACTGGAAACATGAAAATGGAT	60.183	34.615	0.00	0.00	40.96	3.41
4131	10678	6.824553	TGGAAACATGAAAATGGATCAACAA	58.175	32.000	0.00	0.00	33.40	2.83
4159	10706	9.753674	TTCATTCCTCTGATAAACCTGTAAAAT	57.246	29.630	0.00	0.00	0.00	1.82
4213	10760	3.436577	AGTCCCTCTAGAAACTCGTGA	57.563	47.619	0.00	0.00	0.00	4.35
4223	10770	2.632996	AGAAACTCGTGATTCACCTCCA	59.367	45.455	11.12	0.00	0.00	3.86
4306	10862	8.633408	CGAATTTTTGACTTTCATTTAGCTCAG	58.367	33.333	0.00	0.00	0.00	3.35
4353	10909	4.166725	TGATCTTGGATTCATGCTTAGGGT	59.833	41.667	0.00	0.00	0.00	4.34
4491	11049	3.548745	TGTCCACAATGCATCTCCTAG	57.451	47.619	0.00	0.00	0.00	3.02
4492	11050	3.106827	TGTCCACAATGCATCTCCTAGA	58.893	45.455	0.00	0.00	0.00	2.43
4506	11064	4.999310	TCTCCTAGACTCCTGTTTCTGAA	58.001	43.478	0.00	0.00	0.00	3.02
4513	11071	8.260818	CCTAGACTCCTGTTTCTGAATAAATCA	58.739	37.037	0.00	0.00	36.38	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	1.614413	CCGACTAGGAGATAGGTTGGC	59.386	57.143	0.00	0.00	45.00	4.52
10	11	2.946785	ACCCGACTAGGAGATAGGTTG	58.053	52.381	0.00	0.00	45.00	3.77
31	32	1.133853	GCAGGGAATCTCAATGCCTCT	60.134	52.381	0.00	0.00	36.34	3.69
65	67	0.179062	CCCTATGTCTGCCTGTCTGC	60.179	60.000	0.00	0.00	0.00	4.26
71	73	2.783379	TCATCTCCCTATGTCTGCCT	57.217	50.000	0.00	0.00	0.00	4.75
85	87	2.747467	CGTCAAGCCCATGGATTCATCT	60.747	50.000	15.22	0.00	0.00	2.90
371	376	6.605594	TGTCAACTTTGTGAGACCCTTATTTT	59.394	34.615	0.00	0.00	0.00	1.82
378	383	3.694566	AGTTTGTCAACTTTGTGAGACCC	59.305	43.478	0.00	0.00	40.66	4.46
379	384	4.965119	AGTTTGTCAACTTTGTGAGACC	57.035	40.909	0.00	0.00	40.66	3.85
560	603	2.926778	ATATTGAGACAGGAGGCAGC	57.073	50.000	0.00	0.00	0.00	5.25
795	849	4.830046	TCTCCACCAACTATATGCTCTCTC	59.170	45.833	0.00	0.00	0.00	3.20
916	970	3.075005	GAGGGAGCCGCAGTGGTA	61.075	66.667	0.89	0.00	41.21	3.25
1122	1176	7.309194	GGGAGCTGTAAGTTTGTCATAATTTGT	60.309	37.037	0.00	0.00	35.30	2.83
1260	1314	6.146184	CGAAAGAGTGAAAATAGTCTGCTTCA	59.854	38.462	0.00	0.00	30.94	3.02
1360	1414	5.585844	GCAATATCAACAATGGGGAAAAAGG	59.414	40.000	0.00	0.00	0.00	3.11
1425	1479	3.119245	GGCTAAGAATATGCATGCATGGG	60.119	47.826	37.43	20.62	37.82	4.00
1466	1520	5.398012	GCTGGATCCCTTGAACCTAAGTATT	60.398	44.000	9.90	0.00	34.62	1.89
1874	1928	9.817809	AGTAATGTGTATGAACGTATCTCAATT	57.182	29.630	0.00	0.00	0.00	2.32
1875	1929	9.817809	AAGTAATGTGTATGAACGTATCTCAAT	57.182	29.630	0.00	0.00	0.00	2.57
1884	1949	8.964420	AAATTTGGAAGTAATGTGTATGAACG	57.036	30.769	0.00	0.00	0.00	3.95
1979	2044	9.463443	ACAATCAAACTTGTAAAATCTAACAGC	57.537	29.630	0.00	0.00	37.58	4.40
2095	2163	1.252175	TTGCATAAAAGGCAGCGGAA	58.748	45.000	0.00	0.00	43.05	4.30
2128	2197	3.084039	AGTCACCGACATCATTTGCATT	58.916	40.909	0.00	0.00	34.60	3.56
2137	2206	0.388649	AGCGTTGAGTCACCGACATC	60.389	55.000	14.84	0.00	34.60	3.06
2166	2235	7.255569	TGATACATTCAAAGTCAGTAGTACGG	58.744	38.462	0.00	0.00	0.00	4.02
2194	5110	1.512926	ACGTCCACATTCTCACAAGC	58.487	50.000	0.00	0.00	0.00	4.01
2216	5132	4.276183	AGCTGAATACGATCGTCTGTATGT	59.724	41.667	26.48	3.24	31.89	2.29
2236	5152	8.910351	AAGTTATCTCTCTGTTGTTTTTAGCT	57.090	30.769	0.00	0.00	0.00	3.32
2311	5227	2.814336	AGGCAAAACACTCGAAGGATTC	59.186	45.455	0.00	0.00	43.09	2.52
2378	5295	3.352338	GAGCATGCTTGGCAGGTGC	62.352	63.158	23.61	1.03	43.65	5.01
2383	5300	0.905809	ATTTGGGAGCATGCTTGGCA	60.906	50.000	23.61	5.83	44.86	4.92
2385	5302	3.891422	TTAATTTGGGAGCATGCTTGG	57.109	42.857	23.61	0.00	0.00	3.61
2404	5321	8.907222	AATGTTGTTTTATTTCCAGAGCATTT	57.093	26.923	0.00	0.00	0.00	2.32
2432	5349	0.686769	ACGGGTGTAGGAGATGACCC	60.687	60.000	0.00	0.00	44.19	4.46
2501	5425	2.609491	GGTGATGTTATGCCGCGAGATA	60.609	50.000	8.23	0.00	0.00	1.98
2517	5441	5.501156	GGAACTTCCTCTAAATGTGGTGAT	58.499	41.667	0.00	0.00	32.53	3.06
2520	5444	3.581332	TCGGAACTTCCTCTAAATGTGGT	59.419	43.478	6.25	0.00	33.30	4.16
2541	5465	1.155424	TTGGCAAGTGTTCGGACGTC	61.155	55.000	7.13	7.13	0.00	4.34
2568	5492	9.425248	TTCTATCTCAATAGAATGGGCAAAATT	57.575	29.630	4.22	0.00	45.38	1.82
2586	5510	5.513141	GCATTGTTTTCGCCTTTTCTATCTC	59.487	40.000	0.00	0.00	0.00	2.75
2627	5664	3.500448	TCCTGTTTGCCAAGTCATGTA	57.500	42.857	0.00	0.00	0.00	2.29
2628	5665	2.363306	TCCTGTTTGCCAAGTCATGT	57.637	45.000	0.00	0.00	0.00	3.21
2629	5666	3.731652	TTTCCTGTTTGCCAAGTCATG	57.268	42.857	0.00	0.00	0.00	3.07
2630	5667	3.960102	TCTTTTCCTGTTTGCCAAGTCAT	59.040	39.130	0.00	0.00	0.00	3.06
2694	5736	2.158623	ACATGGAGAAGGCAAGTGTTCA	60.159	45.455	0.00	0.00	0.00	3.18
2712	5754	2.313342	AGTCTAGTGGAGGACCTCACAT	59.687	50.000	23.06	9.94	37.04	3.21
2737	5781	0.821711	TAGTTGTGTTGCAGGTGGCC	60.822	55.000	0.00	0.00	43.89	5.36
3299	6351	4.065088	CCGAAACTTCCTTCACAATCTCA	58.935	43.478	0.00	0.00	0.00	3.27
3324	6376	0.955905	CCACCAAAAGTACCGGTTGG	59.044	55.000	15.04	17.37	46.05	3.77
3497	6549	2.066262	ACAGAAGGACGCACATAAACG	58.934	47.619	0.00	0.00	0.00	3.60
3528	6580	9.174166	GGTTATTCTTGACCAATGTATGTACTT	57.826	33.333	0.00	0.00	35.95	2.24
3542	6599	4.633565	CCAAGAGCTCTGGTTATTCTTGAC	59.366	45.833	19.06	0.00	44.58	3.18
3591	6689	7.038587	ACCAAGTAGTAATACACATGAGACCAA	60.039	37.037	0.00	0.00	0.00	3.67
3604	6702	9.743581	CCCTAAAAGGAAAACCAAGTAGTAATA	57.256	33.333	0.00	0.00	37.67	0.98
3654	6758	2.619646	TGCATGCAAGTAGCCATACATG	59.380	45.455	20.30	0.00	44.83	3.21
3672	6783	2.658268	CACACGCGTGAGACTGCA	60.658	61.111	42.94	0.00	46.80	4.41
3898	10445	9.773328	CACATATCTATGTAACTTGTTTTGGTG	57.227	33.333	2.65	0.00	44.57	4.17
4125	10672	7.174946	GGTTTATCAGAGGAATGAAGTTGTTGA	59.825	37.037	0.00	0.00	31.76	3.18
4131	10678	6.380079	ACAGGTTTATCAGAGGAATGAAGT	57.620	37.500	0.00	0.00	31.76	3.01
4213	10760	3.392616	GGATATGGACAGTGGAGGTGAAT	59.607	47.826	0.00	0.00	0.00	2.57
4223	10770	1.906574	ACGGTTGTGGATATGGACAGT	59.093	47.619	0.00	0.00	0.00	3.55
4306	10862	9.445878	TCAAGATCTATTGATATTGCCATCTTC	57.554	33.333	16.50	0.00	46.00	2.87
4353	10909	0.392336	GCACCCCATTGCTTTGAACA	59.608	50.000	0.00	0.00	39.59	3.18
4477	11035	3.387374	ACAGGAGTCTAGGAGATGCATTG	59.613	47.826	0.00	0.00	0.00	2.82
4491	11049	8.498054	TGATGATTTATTCAGAAACAGGAGTC	57.502	34.615	0.00	0.00	37.89	3.36
4492	11050	9.118300	GATGATGATTTATTCAGAAACAGGAGT	57.882	33.333	0.00	0.00	37.89	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.