Multiple sequence alignment - TraesCS3D01G436800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G436800 chr3D 100.000 3225 0 0 1 3225 548544199 548540975 0.000000e+00 5956.0
1 TraesCS3D01G436800 chr3D 85.331 484 39 19 2712 3174 548562788 548562316 3.770000e-129 472.0
2 TraesCS3D01G436800 chr3D 93.023 215 14 1 545 759 93612035 93611822 2.420000e-81 313.0
3 TraesCS3D01G436800 chr3D 97.546 163 4 0 240 402 525470951 525471113 2.450000e-71 279.0
4 TraesCS3D01G436800 chr3D 86.093 151 7 8 401 550 548562908 548562771 2.000000e-32 150.0
5 TraesCS3D01G436800 chr3D 97.727 44 1 0 1608 1651 548542548 548542505 3.450000e-10 76.8
6 TraesCS3D01G436800 chr3D 97.727 44 1 0 1652 1695 548542592 548542549 3.450000e-10 76.8
7 TraesCS3D01G436800 chr4D 99.402 2173 10 1 551 2720 3302563 3304735 0.000000e+00 3938.0
8 TraesCS3D01G436800 chr4D 97.727 44 1 0 1652 1695 3303623 3303666 3.450000e-10 76.8
9 TraesCS3D01G436800 chr4D 97.727 44 1 0 1608 1651 3303667 3303710 3.450000e-10 76.8
10 TraesCS3D01G436800 chr7A 96.656 1495 46 3 1217 2711 480987805 480989295 0.000000e+00 2481.0
11 TraesCS3D01G436800 chr7A 94.705 661 33 2 1708 2368 536711940 536712598 0.000000e+00 1026.0
12 TraesCS3D01G436800 chr7A 94.100 661 37 2 1708 2368 608673111 608673769 0.000000e+00 1003.0
13 TraesCS3D01G436800 chr7A 88.116 690 43 6 551 1203 480985032 480985719 0.000000e+00 784.0
14 TraesCS3D01G436800 chr7A 86.682 428 30 13 783 1195 536709250 536709665 1.760000e-122 449.0
15 TraesCS3D01G436800 chr7A 97.222 252 6 1 1217 1467 608672871 608673122 2.970000e-115 425.0
16 TraesCS3D01G436800 chr7A 96.429 252 8 1 1217 1467 536711700 536711951 6.440000e-112 414.0
17 TraesCS3D01G436800 chr7A 93.773 273 15 2 2096 2368 649156509 649156239 2.990000e-110 409.0
18 TraesCS3D01G436800 chr7A 97.727 44 1 0 1652 1695 480988194 480988237 3.450000e-10 76.8
19 TraesCS3D01G436800 chr7A 97.727 44 1 0 1608 1651 480988238 480988281 3.450000e-10 76.8
20 TraesCS3D01G436800 chr6A 92.787 1012 53 10 1713 2720 8396986 8397981 0.000000e+00 1447.0
21 TraesCS3D01G436800 chr6A 85.547 685 38 25 551 1195 8395394 8396057 0.000000e+00 660.0
22 TraesCS3D01G436800 chr1A 94.656 655 33 2 1714 2368 576629777 576629125 0.000000e+00 1014.0
23 TraesCS3D01G436800 chr1A 86.406 434 26 7 783 1195 576632479 576632058 8.210000e-121 444.0
24 TraesCS3D01G436800 chr1A 96.032 252 9 1 1217 1467 576630023 576629772 2.990000e-110 409.0
25 TraesCS3D01G436800 chr3A 98.053 565 11 0 1217 1781 38027737 38027173 0.000000e+00 983.0
26 TraesCS3D01G436800 chr3A 89.826 688 34 7 551 1203 38030507 38029821 0.000000e+00 850.0
27 TraesCS3D01G436800 chr3A 94.655 449 22 2 1920 2368 594624366 594624812 0.000000e+00 695.0
28 TraesCS3D01G436800 chr3A 81.760 466 69 12 2732 3192 686135597 686135143 3.040000e-100 375.0
29 TraesCS3D01G436800 chr3A 91.102 236 21 0 1 236 686135880 686135645 1.440000e-83 320.0
30 TraesCS3D01G436800 chr3A 82.645 242 15 7 783 1009 369078231 369078460 4.250000e-44 189.0
31 TraesCS3D01G436800 chr3A 97.727 44 1 0 1608 1651 38027302 38027259 3.450000e-10 76.8
32 TraesCS3D01G436800 chr3A 97.727 44 1 0 1652 1695 38027346 38027303 3.450000e-10 76.8
33 TraesCS3D01G436800 chr4A 93.343 661 36 3 1708 2368 725277056 725277708 0.000000e+00 970.0
34 TraesCS3D01G436800 chr4A 87.850 428 25 7 783 1195 725275236 725275651 8.090000e-131 477.0
35 TraesCS3D01G436800 chr4A 98.413 189 3 0 1279 1467 725276879 725277067 1.850000e-87 333.0
36 TraesCS3D01G436800 chr3B 85.093 483 41 16 2712 3174 727139928 727139457 6.300000e-127 464.0
37 TraesCS3D01G436800 chr3B 85.120 457 41 12 2737 3174 726770051 726769603 2.950000e-120 442.0
38 TraesCS3D01G436800 chr3B 81.027 448 60 17 2738 3174 727316090 727315657 1.850000e-87 333.0
39 TraesCS3D01G436800 chr3B 80.804 448 61 17 2738 3174 727238170 727237737 8.630000e-86 327.0
40 TraesCS3D01G436800 chr3B 90.667 225 20 1 1 224 726770439 726770215 6.760000e-77 298.0
41 TraesCS3D01G436800 chr3B 89.640 222 21 2 16 236 727238449 727238229 6.810000e-72 281.0
42 TraesCS3D01G436800 chr3B 89.640 222 21 2 16 236 727316369 727316149 6.810000e-72 281.0
43 TraesCS3D01G436800 chr3B 96.933 163 5 0 240 402 79116950 79117112 1.140000e-69 274.0
44 TraesCS3D01G436800 chr3B 88.073 218 26 0 19 236 727140669 727140452 3.190000e-65 259.0
45 TraesCS3D01G436800 chr3B 88.618 123 13 1 429 550 727140033 727139911 7.210000e-32 148.0
46 TraesCS3D01G436800 chr3B 86.923 130 15 2 426 554 726770181 726770053 9.320000e-31 145.0
47 TraesCS3D01G436800 chr5A 97.170 212 6 0 2500 2711 645390585 645390796 3.060000e-95 359.0
48 TraesCS3D01G436800 chr5A 81.500 400 56 8 1808 2207 537994874 537995255 2.420000e-81 313.0
49 TraesCS3D01G436800 chr7D 94.348 230 12 1 2493 2721 1526349 1526120 5.120000e-93 351.0
50 TraesCS3D01G436800 chr7D 93.182 220 13 2 541 759 599464755 599464537 4.010000e-84 322.0
51 TraesCS3D01G436800 chr7D 94.258 209 11 1 551 759 584038111 584038318 5.190000e-83 318.0
52 TraesCS3D01G436800 chr7D 96.933 163 5 0 241 403 254573868 254573706 1.140000e-69 274.0
53 TraesCS3D01G436800 chr7D 96.951 164 4 1 239 402 549295452 549295290 1.140000e-69 274.0
54 TraesCS3D01G436800 chr2D 94.298 228 12 1 2493 2720 204265564 204265790 6.620000e-92 348.0
55 TraesCS3D01G436800 chr2D 93.427 213 13 1 547 759 462487110 462486899 6.720000e-82 315.0
56 TraesCS3D01G436800 chr2D 98.773 163 2 0 240 402 27073326 27073488 1.130000e-74 291.0
57 TraesCS3D01G436800 chr2D 97.531 162 4 0 241 402 51138647 51138808 8.810000e-71 278.0
58 TraesCS3D01G436800 chr2D 95.808 167 7 0 237 403 602739404 602739570 1.470000e-68 270.0
59 TraesCS3D01G436800 chr1D 93.860 228 14 0 2493 2720 37432674 37432447 8.570000e-91 344.0
60 TraesCS3D01G436800 chr1D 92.827 237 15 2 2493 2729 467647966 467647732 3.080000e-90 342.0
61 TraesCS3D01G436800 chr1D 92.377 223 15 2 540 761 467648236 467648015 1.870000e-82 316.0
62 TraesCS3D01G436800 chr1D 93.780 209 12 1 551 759 468138017 468137810 2.420000e-81 313.0
63 TraesCS3D01G436800 chrUn 83.081 396 47 7 1813 2207 75400411 75400035 3.080000e-90 342.0
64 TraesCS3D01G436800 chr4B 93.133 233 14 2 2493 2725 670066709 670066939 1.110000e-89 340.0
65 TraesCS3D01G436800 chr4B 87.444 223 20 5 1217 1437 415769701 415769485 1.920000e-62 250.0
66 TraesCS3D01G436800 chr5D 93.868 212 12 1 548 759 424910350 424910140 5.190000e-83 318.0
67 TraesCS3D01G436800 chr5D 96.364 165 6 0 239 403 151671546 151671710 4.100000e-69 272.0
68 TraesCS3D01G436800 chr2B 96.364 165 6 0 240 404 134256689 134256853 4.100000e-69 272.0
69 TraesCS3D01G436800 chr1B 95.808 167 7 0 239 405 503669980 503670146 1.470000e-68 270.0
70 TraesCS3D01G436800 chr7B 87.444 223 20 5 1217 1437 728283615 728283831 1.920000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G436800 chr3D 548540975 548544199 3224 True 2036.533333 5956 98.484667 1 3225 3 chr3D.!!$R2 3224
1 TraesCS3D01G436800 chr3D 548562316 548562908 592 True 311.000000 472 85.712000 401 3174 2 chr3D.!!$R3 2773
2 TraesCS3D01G436800 chr4D 3302563 3304735 2172 False 1363.866667 3938 98.285333 551 2720 3 chr4D.!!$F1 2169
3 TraesCS3D01G436800 chr7A 480985032 480989295 4263 False 854.650000 2481 95.056500 551 2711 4 chr7A.!!$F1 2160
4 TraesCS3D01G436800 chr7A 608672871 608673769 898 False 714.000000 1003 95.661000 1217 2368 2 chr7A.!!$F3 1151
5 TraesCS3D01G436800 chr7A 536709250 536712598 3348 False 629.666667 1026 92.605333 783 2368 3 chr7A.!!$F2 1585
6 TraesCS3D01G436800 chr6A 8395394 8397981 2587 False 1053.500000 1447 89.167000 551 2720 2 chr6A.!!$F1 2169
7 TraesCS3D01G436800 chr1A 576629125 576632479 3354 True 622.333333 1014 92.364667 783 2368 3 chr1A.!!$R1 1585
8 TraesCS3D01G436800 chr3A 38027173 38030507 3334 True 496.650000 983 95.833250 551 1781 4 chr3A.!!$R1 1230
9 TraesCS3D01G436800 chr3A 686135143 686135880 737 True 347.500000 375 86.431000 1 3192 2 chr3A.!!$R2 3191
10 TraesCS3D01G436800 chr4A 725275236 725277708 2472 False 593.333333 970 93.202000 783 2368 3 chr4A.!!$F1 1585
11 TraesCS3D01G436800 chr3B 727315657 727316369 712 True 307.000000 333 85.333500 16 3174 2 chr3B.!!$R4 3158
12 TraesCS3D01G436800 chr3B 727237737 727238449 712 True 304.000000 327 85.222000 16 3174 2 chr3B.!!$R3 3158
13 TraesCS3D01G436800 chr3B 726769603 726770439 836 True 295.000000 442 87.570000 1 3174 3 chr3B.!!$R1 3173
14 TraesCS3D01G436800 chr3B 727139457 727140669 1212 True 290.333333 464 87.261333 19 3174 3 chr3B.!!$R2 3155
15 TraesCS3D01G436800 chr1D 467647732 467648236 504 True 329.000000 342 92.602000 540 2729 2 chr1D.!!$R3 2189

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 453 1.043116 TAGCCGTCCACTGATCAGGG 61.043 60.0 26.08 22.60 0.00 4.45 F
452 455 1.690219 GCCGTCCACTGATCAGGGAT 61.690 60.0 26.95 2.05 32.29 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1337 3669 3.877735 GCCAATACCCTGAGATTTGGTGT 60.878 47.826 0.0 0.0 39.21 4.16 R
2720 5357 6.523840 TGTTGAACCAGGTACGTATTAAACT 58.476 36.000 0.0 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.296471 ACTGAGGTCAATCGACGACTTT 59.704 45.455 14.54 5.71 43.61 2.66
39 41 4.022589 ACTGAGGTCAATCGACGACTTTTA 60.023 41.667 14.54 3.03 43.61 1.52
104 106 6.509418 TGATTTGGCACTGGATTTTAGTAC 57.491 37.500 0.00 0.00 0.00 2.73
118 120 1.191535 TAGTACTTGGCACGCATCCT 58.808 50.000 0.00 0.00 0.00 3.24
120 122 1.762957 AGTACTTGGCACGCATCCTAT 59.237 47.619 0.00 0.00 0.00 2.57
158 160 2.478879 CCATATGTCGACGTGCAGTGTA 60.479 50.000 20.52 0.00 0.00 2.90
192 194 7.015098 TCAGGGATAATTTTGCTTTCTGTTCAA 59.985 33.333 0.00 0.00 0.00 2.69
198 200 3.576078 TTGCTTTCTGTTCAAGGGAGA 57.424 42.857 0.00 0.00 0.00 3.71
219 221 1.080230 CTGACTCTGCCCACTGTCG 60.080 63.158 0.00 0.00 32.64 4.35
236 239 4.691216 ACTGTCGGATAAAAGAGCACTTTC 59.309 41.667 9.66 0.00 44.32 2.62
237 240 4.894784 TGTCGGATAAAAGAGCACTTTCT 58.105 39.130 9.66 0.85 44.32 2.52
238 241 5.305585 TGTCGGATAAAAGAGCACTTTCTT 58.694 37.500 9.66 0.68 44.32 2.52
239 242 6.460781 TGTCGGATAAAAGAGCACTTTCTTA 58.539 36.000 9.66 0.41 44.32 2.10
240 243 7.103641 TGTCGGATAAAAGAGCACTTTCTTAT 58.896 34.615 9.66 5.24 44.32 1.73
241 244 8.255206 TGTCGGATAAAAGAGCACTTTCTTATA 58.745 33.333 9.66 0.00 44.32 0.98
242 245 8.541312 GTCGGATAAAAGAGCACTTTCTTATAC 58.459 37.037 9.66 5.28 44.32 1.47
243 246 8.475639 TCGGATAAAAGAGCACTTTCTTATACT 58.524 33.333 9.66 0.00 44.32 2.12
244 247 8.756864 CGGATAAAAGAGCACTTTCTTATACTC 58.243 37.037 9.66 0.63 44.32 2.59
245 248 9.047371 GGATAAAAGAGCACTTTCTTATACTCC 57.953 37.037 9.66 5.33 44.32 3.85
246 249 8.966069 ATAAAAGAGCACTTTCTTATACTCCC 57.034 34.615 9.66 0.00 44.32 4.30
247 250 6.628644 AAAGAGCACTTTCTTATACTCCCT 57.371 37.500 3.03 0.00 41.80 4.20
248 251 5.862678 AGAGCACTTTCTTATACTCCCTC 57.137 43.478 0.00 0.00 0.00 4.30
249 252 4.651962 AGAGCACTTTCTTATACTCCCTCC 59.348 45.833 0.00 0.00 0.00 4.30
250 253 3.385111 AGCACTTTCTTATACTCCCTCCG 59.615 47.826 0.00 0.00 0.00 4.63
251 254 3.132467 GCACTTTCTTATACTCCCTCCGT 59.868 47.826 0.00 0.00 0.00 4.69
252 255 4.382793 GCACTTTCTTATACTCCCTCCGTT 60.383 45.833 0.00 0.00 0.00 4.44
253 256 5.349809 CACTTTCTTATACTCCCTCCGTTC 58.650 45.833 0.00 0.00 0.00 3.95
254 257 4.405036 ACTTTCTTATACTCCCTCCGTTCC 59.595 45.833 0.00 0.00 0.00 3.62
255 258 3.967467 TCTTATACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
256 259 5.393068 TTCTTATACTCCCTCCGTTCCTA 57.607 43.478 0.00 0.00 0.00 2.94
257 260 5.393068 TCTTATACTCCCTCCGTTCCTAA 57.607 43.478 0.00 0.00 0.00 2.69
258 261 5.769835 TCTTATACTCCCTCCGTTCCTAAA 58.230 41.667 0.00 0.00 0.00 1.85
259 262 6.379579 TCTTATACTCCCTCCGTTCCTAAAT 58.620 40.000 0.00 0.00 0.00 1.40
260 263 7.529555 TCTTATACTCCCTCCGTTCCTAAATA 58.470 38.462 0.00 0.00 0.00 1.40
261 264 8.175431 TCTTATACTCCCTCCGTTCCTAAATAT 58.825 37.037 0.00 0.00 0.00 1.28
262 265 9.471702 CTTATACTCCCTCCGTTCCTAAATATA 57.528 37.037 0.00 0.00 0.00 0.86
263 266 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
264 267 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
265 268 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
266 269 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
267 270 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
268 271 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
269 272 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
270 273 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
271 274 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
272 275 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
273 276 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
274 277 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
275 278 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
286 289 9.829507 ATAAGTCTTTGGAGAGATTTCACTATG 57.170 33.333 0.00 0.00 31.07 2.23
287 290 6.648192 AGTCTTTGGAGAGATTTCACTATGG 58.352 40.000 0.00 0.00 31.07 2.74
288 291 6.441924 AGTCTTTGGAGAGATTTCACTATGGA 59.558 38.462 0.00 0.00 31.07 3.41
289 292 6.536941 GTCTTTGGAGAGATTTCACTATGGAC 59.463 42.308 0.00 0.00 31.07 4.02
290 293 5.359194 TTGGAGAGATTTCACTATGGACC 57.641 43.478 0.00 0.00 0.00 4.46
291 294 4.361783 TGGAGAGATTTCACTATGGACCA 58.638 43.478 0.00 0.00 0.00 4.02
292 295 4.162320 TGGAGAGATTTCACTATGGACCAC 59.838 45.833 0.00 0.00 0.00 4.16
293 296 4.162320 GGAGAGATTTCACTATGGACCACA 59.838 45.833 0.00 0.00 0.00 4.17
294 297 5.163258 GGAGAGATTTCACTATGGACCACAT 60.163 44.000 0.00 0.00 43.68 3.21
295 298 6.042093 GGAGAGATTTCACTATGGACCACATA 59.958 42.308 0.00 0.00 41.03 2.29
296 299 6.821388 AGAGATTTCACTATGGACCACATAC 58.179 40.000 0.00 0.00 41.03 2.39
297 300 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
298 301 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
299 302 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
300 303 2.956333 TCACTATGGACCACATACGGAG 59.044 50.000 0.00 0.00 41.03 4.63
316 319 4.618920 ACGGAGTAAAATGAGTGAACCT 57.381 40.909 0.00 0.00 41.94 3.50
317 320 5.733620 ACGGAGTAAAATGAGTGAACCTA 57.266 39.130 0.00 0.00 41.94 3.08
318 321 6.295719 ACGGAGTAAAATGAGTGAACCTAT 57.704 37.500 0.00 0.00 41.94 2.57
319 322 7.414222 ACGGAGTAAAATGAGTGAACCTATA 57.586 36.000 0.00 0.00 41.94 1.31
320 323 7.263496 ACGGAGTAAAATGAGTGAACCTATAC 58.737 38.462 0.00 0.00 41.94 1.47
321 324 7.123847 ACGGAGTAAAATGAGTGAACCTATACT 59.876 37.037 0.00 0.00 41.94 2.12
322 325 7.648510 CGGAGTAAAATGAGTGAACCTATACTC 59.351 40.741 0.00 0.00 42.77 2.59
323 326 8.697292 GGAGTAAAATGAGTGAACCTATACTCT 58.303 37.037 0.00 0.00 42.86 3.24
330 333 8.894768 ATGAGTGAACCTATACTCTAAAATGC 57.105 34.615 0.00 0.00 42.86 3.56
331 334 7.847096 TGAGTGAACCTATACTCTAAAATGCA 58.153 34.615 0.00 0.00 42.86 3.96
332 335 8.486210 TGAGTGAACCTATACTCTAAAATGCAT 58.514 33.333 0.00 0.00 42.86 3.96
333 336 8.894768 AGTGAACCTATACTCTAAAATGCATC 57.105 34.615 0.00 0.00 0.00 3.91
334 337 8.486210 AGTGAACCTATACTCTAAAATGCATCA 58.514 33.333 0.00 0.00 0.00 3.07
335 338 9.109393 GTGAACCTATACTCTAAAATGCATCAA 57.891 33.333 0.00 0.00 0.00 2.57
336 339 9.109393 TGAACCTATACTCTAAAATGCATCAAC 57.891 33.333 0.00 0.00 0.00 3.18
337 340 9.109393 GAACCTATACTCTAAAATGCATCAACA 57.891 33.333 0.00 0.00 0.00 3.33
338 341 9.632638 AACCTATACTCTAAAATGCATCAACAT 57.367 29.630 0.00 0.00 0.00 2.71
344 347 7.934457 ACTCTAAAATGCATCAACATACATCC 58.066 34.615 0.00 0.00 0.00 3.51
345 348 6.958255 TCTAAAATGCATCAACATACATCCG 58.042 36.000 0.00 0.00 0.00 4.18
346 349 5.581126 AAAATGCATCAACATACATCCGT 57.419 34.783 0.00 0.00 0.00 4.69
347 350 6.691754 AAAATGCATCAACATACATCCGTA 57.308 33.333 0.00 0.00 0.00 4.02
348 351 6.882610 AAATGCATCAACATACATCCGTAT 57.117 33.333 0.00 0.00 38.96 3.06
356 359 3.744238 CATACATCCGTATGTGGTCCA 57.256 47.619 3.56 0.00 46.70 4.02
357 360 4.271696 CATACATCCGTATGTGGTCCAT 57.728 45.455 3.56 0.00 46.70 3.41
358 361 5.400066 CATACATCCGTATGTGGTCCATA 57.600 43.478 3.56 0.00 46.70 2.74
359 362 5.410924 CATACATCCGTATGTGGTCCATAG 58.589 45.833 3.56 0.00 46.70 2.23
360 363 3.305720 ACATCCGTATGTGGTCCATAGT 58.694 45.455 0.00 0.00 44.79 2.12
361 364 3.069586 ACATCCGTATGTGGTCCATAGTG 59.930 47.826 0.00 0.00 44.79 2.74
362 365 3.021177 TCCGTATGTGGTCCATAGTGA 57.979 47.619 0.00 0.00 36.71 3.41
363 366 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
364 367 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
365 368 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
366 369 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
367 370 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
368 371 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
369 372 5.965033 ATGTGGTCCATAGTGAAATCTCT 57.035 39.130 0.00 0.00 29.82 3.10
370 373 7.255486 CGTATGTGGTCCATAGTGAAATCTCTA 60.255 40.741 0.00 0.00 36.71 2.43
371 374 6.222038 TGTGGTCCATAGTGAAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
372 375 5.719563 TGTGGTCCATAGTGAAATCTCTACA 59.280 40.000 0.00 0.00 0.00 2.74
373 376 6.212589 TGTGGTCCATAGTGAAATCTCTACAA 59.787 38.462 0.00 0.00 0.00 2.41
374 377 7.103641 GTGGTCCATAGTGAAATCTCTACAAA 58.896 38.462 0.00 0.00 0.00 2.83
375 378 7.278868 GTGGTCCATAGTGAAATCTCTACAAAG 59.721 40.741 0.00 0.00 0.00 2.77
376 379 7.180229 TGGTCCATAGTGAAATCTCTACAAAGA 59.820 37.037 0.00 0.00 0.00 2.52
377 380 7.492994 GGTCCATAGTGAAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 0.00 3.01
378 381 8.254508 GTCCATAGTGAAATCTCTACAAAGACT 58.745 37.037 0.00 0.00 0.00 3.24
379 382 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
395 398 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
396 399 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
397 400 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
398 401 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
399 402 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
418 421 8.319881 GGAGGGAGTATGAGTTAAAAGTAGTTT 58.680 37.037 0.00 0.00 0.00 2.66
442 445 5.353394 TTTTCTTATCATAGCCGTCCACT 57.647 39.130 0.00 0.00 0.00 4.00
443 446 4.322080 TTCTTATCATAGCCGTCCACTG 57.678 45.455 0.00 0.00 0.00 3.66
444 447 3.562182 TCTTATCATAGCCGTCCACTGA 58.438 45.455 0.00 0.00 0.00 3.41
445 448 4.152647 TCTTATCATAGCCGTCCACTGAT 58.847 43.478 0.00 0.00 0.00 2.90
446 449 4.218635 TCTTATCATAGCCGTCCACTGATC 59.781 45.833 0.00 0.00 0.00 2.92
447 450 1.775385 TCATAGCCGTCCACTGATCA 58.225 50.000 0.00 0.00 0.00 2.92
448 451 1.683385 TCATAGCCGTCCACTGATCAG 59.317 52.381 21.37 21.37 0.00 2.90
449 452 1.043816 ATAGCCGTCCACTGATCAGG 58.956 55.000 26.08 14.68 0.00 3.86
450 453 1.043116 TAGCCGTCCACTGATCAGGG 61.043 60.000 26.08 22.60 0.00 4.45
451 454 2.359169 GCCGTCCACTGATCAGGGA 61.359 63.158 26.95 24.07 32.29 4.20
452 455 1.690219 GCCGTCCACTGATCAGGGAT 61.690 60.000 26.95 2.05 32.29 3.85
453 456 1.704641 CCGTCCACTGATCAGGGATA 58.295 55.000 26.95 11.14 32.29 2.59
454 457 2.039418 CCGTCCACTGATCAGGGATAA 58.961 52.381 26.95 8.50 32.29 1.75
455 458 2.036475 CCGTCCACTGATCAGGGATAAG 59.964 54.545 26.95 20.24 32.29 1.73
456 459 2.695666 CGTCCACTGATCAGGGATAAGT 59.304 50.000 26.95 0.58 34.29 2.24
457 460 3.133003 CGTCCACTGATCAGGGATAAGTT 59.867 47.826 26.95 0.00 31.80 2.66
458 461 4.383118 CGTCCACTGATCAGGGATAAGTTT 60.383 45.833 26.95 0.00 31.80 2.66
459 462 4.878397 GTCCACTGATCAGGGATAAGTTTG 59.122 45.833 26.95 11.42 31.80 2.93
460 463 4.782691 TCCACTGATCAGGGATAAGTTTGA 59.217 41.667 26.95 9.28 31.80 2.69
461 464 4.878397 CCACTGATCAGGGATAAGTTTGAC 59.122 45.833 26.95 0.00 31.80 3.18
462 465 4.878397 CACTGATCAGGGATAAGTTTGACC 59.122 45.833 26.08 0.00 31.80 4.02
463 466 4.122776 CTGATCAGGGATAAGTTTGACCG 58.877 47.826 15.38 0.00 0.00 4.79
464 467 3.517901 TGATCAGGGATAAGTTTGACCGT 59.482 43.478 0.00 0.00 0.00 4.83
465 468 4.712829 TGATCAGGGATAAGTTTGACCGTA 59.287 41.667 0.00 0.00 0.00 4.02
466 469 4.460948 TCAGGGATAAGTTTGACCGTAC 57.539 45.455 0.00 0.00 0.00 3.67
467 470 3.119388 TCAGGGATAAGTTTGACCGTACG 60.119 47.826 8.69 8.69 0.00 3.67
468 471 3.091545 AGGGATAAGTTTGACCGTACGA 58.908 45.455 18.76 0.00 0.00 3.43
469 472 3.703052 AGGGATAAGTTTGACCGTACGAT 59.297 43.478 18.76 0.00 0.00 3.73
470 473 4.047142 GGGATAAGTTTGACCGTACGATC 58.953 47.826 18.76 10.51 0.00 3.69
471 474 4.202090 GGGATAAGTTTGACCGTACGATCT 60.202 45.833 18.76 0.00 0.00 2.75
472 475 5.346522 GGATAAGTTTGACCGTACGATCTT 58.653 41.667 18.76 9.68 0.00 2.40
473 476 5.809051 GGATAAGTTTGACCGTACGATCTTT 59.191 40.000 18.76 5.73 0.00 2.52
474 477 6.312180 GGATAAGTTTGACCGTACGATCTTTT 59.688 38.462 18.76 5.38 0.00 2.27
475 478 5.996669 AAGTTTGACCGTACGATCTTTTT 57.003 34.783 18.76 0.10 0.00 1.94
476 479 8.761575 ATAAGTTTGACCGTACGATCTTTTTA 57.238 30.769 18.76 7.74 0.00 1.52
477 480 6.457851 AGTTTGACCGTACGATCTTTTTAC 57.542 37.500 18.76 4.60 0.00 2.01
478 481 6.218746 AGTTTGACCGTACGATCTTTTTACT 58.781 36.000 18.76 6.83 0.00 2.24
479 482 6.703165 AGTTTGACCGTACGATCTTTTTACTT 59.297 34.615 18.76 0.00 0.00 2.24
480 483 7.867403 AGTTTGACCGTACGATCTTTTTACTTA 59.133 33.333 18.76 0.00 0.00 2.24
481 484 8.650714 GTTTGACCGTACGATCTTTTTACTTAT 58.349 33.333 18.76 0.00 0.00 1.73
482 485 7.745022 TGACCGTACGATCTTTTTACTTATG 57.255 36.000 18.76 0.00 0.00 1.90
483 486 6.753279 TGACCGTACGATCTTTTTACTTATGG 59.247 38.462 18.76 0.00 0.00 2.74
484 487 6.866480 ACCGTACGATCTTTTTACTTATGGA 58.134 36.000 18.76 0.00 0.00 3.41
485 488 7.322664 ACCGTACGATCTTTTTACTTATGGAA 58.677 34.615 18.76 0.00 0.00 3.53
486 489 7.818930 ACCGTACGATCTTTTTACTTATGGAAA 59.181 33.333 18.76 0.00 0.00 3.13
487 490 8.325997 CCGTACGATCTTTTTACTTATGGAAAG 58.674 37.037 18.76 0.00 0.00 2.62
488 491 8.866956 CGTACGATCTTTTTACTTATGGAAAGT 58.133 33.333 10.44 0.00 32.43 2.66
491 494 9.893305 ACGATCTTTTTACTTATGGAAAGTTTG 57.107 29.630 0.00 0.00 32.43 2.93
492 495 9.341899 CGATCTTTTTACTTATGGAAAGTTTGG 57.658 33.333 0.00 0.00 32.43 3.28
495 498 9.810545 TCTTTTTACTTATGGAAAGTTTGGTTG 57.189 29.630 0.00 0.00 32.43 3.77
496 499 9.594478 CTTTTTACTTATGGAAAGTTTGGTTGT 57.406 29.630 0.00 0.00 0.00 3.32
497 500 9.589111 TTTTTACTTATGGAAAGTTTGGTTGTC 57.411 29.630 0.00 0.00 0.00 3.18
498 501 8.528044 TTTACTTATGGAAAGTTTGGTTGTCT 57.472 30.769 0.00 0.00 0.00 3.41
499 502 6.391227 ACTTATGGAAAGTTTGGTTGTCTG 57.609 37.500 0.00 0.00 0.00 3.51
500 503 5.891551 ACTTATGGAAAGTTTGGTTGTCTGT 59.108 36.000 0.00 0.00 0.00 3.41
501 504 6.379988 ACTTATGGAAAGTTTGGTTGTCTGTT 59.620 34.615 0.00 0.00 0.00 3.16
502 505 4.448537 TGGAAAGTTTGGTTGTCTGTTG 57.551 40.909 0.00 0.00 0.00 3.33
503 506 3.829601 TGGAAAGTTTGGTTGTCTGTTGT 59.170 39.130 0.00 0.00 0.00 3.32
504 507 4.173256 GGAAAGTTTGGTTGTCTGTTGTG 58.827 43.478 0.00 0.00 0.00 3.33
505 508 3.866883 AAGTTTGGTTGTCTGTTGTGG 57.133 42.857 0.00 0.00 0.00 4.17
506 509 3.080300 AGTTTGGTTGTCTGTTGTGGA 57.920 42.857 0.00 0.00 0.00 4.02
507 510 3.426615 AGTTTGGTTGTCTGTTGTGGAA 58.573 40.909 0.00 0.00 0.00 3.53
508 511 3.829601 AGTTTGGTTGTCTGTTGTGGAAA 59.170 39.130 0.00 0.00 0.00 3.13
509 512 4.082245 AGTTTGGTTGTCTGTTGTGGAAAG 60.082 41.667 0.00 0.00 0.00 2.62
510 513 3.358111 TGGTTGTCTGTTGTGGAAAGA 57.642 42.857 0.00 0.00 0.00 2.52
511 514 3.278574 TGGTTGTCTGTTGTGGAAAGAG 58.721 45.455 0.00 0.00 0.00 2.85
512 515 3.054728 TGGTTGTCTGTTGTGGAAAGAGA 60.055 43.478 0.00 0.00 0.00 3.10
513 516 3.945285 GGTTGTCTGTTGTGGAAAGAGAA 59.055 43.478 0.00 0.00 0.00 2.87
514 517 4.035675 GGTTGTCTGTTGTGGAAAGAGAAG 59.964 45.833 0.00 0.00 0.00 2.85
515 518 4.487714 TGTCTGTTGTGGAAAGAGAAGT 57.512 40.909 0.00 0.00 0.00 3.01
516 519 4.442706 TGTCTGTTGTGGAAAGAGAAGTC 58.557 43.478 0.00 0.00 0.00 3.01
517 520 4.162320 TGTCTGTTGTGGAAAGAGAAGTCT 59.838 41.667 0.00 0.00 32.81 3.24
518 521 5.119694 GTCTGTTGTGGAAAGAGAAGTCTT 58.880 41.667 0.00 0.00 45.56 3.01
519 522 6.127168 TGTCTGTTGTGGAAAGAGAAGTCTTA 60.127 38.462 0.00 0.00 42.59 2.10
520 523 6.931840 GTCTGTTGTGGAAAGAGAAGTCTTAT 59.068 38.462 0.00 0.00 42.59 1.73
521 524 7.117092 GTCTGTTGTGGAAAGAGAAGTCTTATC 59.883 40.741 0.00 0.00 42.59 1.75
522 525 6.826668 TGTTGTGGAAAGAGAAGTCTTATCA 58.173 36.000 9.78 0.00 42.59 2.15
523 526 6.931281 TGTTGTGGAAAGAGAAGTCTTATCAG 59.069 38.462 9.78 0.00 42.59 2.90
524 527 6.918067 TGTGGAAAGAGAAGTCTTATCAGA 57.082 37.500 9.78 0.00 42.59 3.27
525 528 7.303182 TGTGGAAAGAGAAGTCTTATCAGAA 57.697 36.000 9.78 0.00 42.59 3.02
526 529 7.155328 TGTGGAAAGAGAAGTCTTATCAGAAC 58.845 38.462 9.78 1.98 42.59 3.01
527 530 6.309251 GTGGAAAGAGAAGTCTTATCAGAACG 59.691 42.308 9.78 0.00 42.59 3.95
528 531 5.289917 GGAAAGAGAAGTCTTATCAGAACGC 59.710 44.000 9.78 0.00 42.59 4.84
529 532 5.392767 AAGAGAAGTCTTATCAGAACGCA 57.607 39.130 9.78 0.00 41.54 5.24
530 533 5.392767 AGAGAAGTCTTATCAGAACGCAA 57.607 39.130 9.78 0.00 0.00 4.85
531 534 5.866633 AAGAGAAGTCTTATCAGAACGCAAG 59.133 40.000 9.78 0.00 41.54 4.01
991 1093 2.894126 ACTCCATCCTATTCCTAGCACG 59.106 50.000 0.00 0.00 0.00 5.34
1287 3619 6.264067 AGAACTTGCAATGCTTTCTTAACTCT 59.736 34.615 6.82 0.00 0.00 3.24
2742 5379 6.757237 TGAGTTTAATACGTACCTGGTTCAA 58.243 36.000 3.84 0.00 0.00 2.69
2751 5393 1.392589 ACCTGGTTCAACAAGCACAG 58.607 50.000 0.00 0.00 35.03 3.66
2752 5394 0.031178 CCTGGTTCAACAAGCACAGC 59.969 55.000 0.00 0.00 35.03 4.40
2762 5404 1.134280 ACAAGCACAGCAGACTTCAGT 60.134 47.619 0.00 0.00 0.00 3.41
2763 5405 1.530293 CAAGCACAGCAGACTTCAGTC 59.470 52.381 0.00 0.00 45.08 3.51
2780 5422 7.383687 ACTTCAGTCAATTCGTAGTAAATCCA 58.616 34.615 0.00 0.00 0.00 3.41
2783 5425 6.761242 TCAGTCAATTCGTAGTAAATCCATGG 59.239 38.462 4.97 4.97 0.00 3.66
2784 5426 6.017934 CAGTCAATTCGTAGTAAATCCATGGG 60.018 42.308 13.02 0.00 0.00 4.00
2785 5427 4.819630 TCAATTCGTAGTAAATCCATGGGC 59.180 41.667 13.02 0.00 0.00 5.36
2787 5429 3.469008 TCGTAGTAAATCCATGGGCAG 57.531 47.619 13.02 0.00 0.00 4.85
2788 5430 3.035363 TCGTAGTAAATCCATGGGCAGA 58.965 45.455 13.02 0.00 0.00 4.26
2790 5432 4.080807 TCGTAGTAAATCCATGGGCAGAAA 60.081 41.667 13.02 0.00 0.00 2.52
2791 5433 4.821805 CGTAGTAAATCCATGGGCAGAAAT 59.178 41.667 13.02 0.00 0.00 2.17
2808 5450 4.751600 CAGAAATCCGTGCTATGCATTCTA 59.248 41.667 3.54 0.00 41.91 2.10
2809 5451 4.993584 AGAAATCCGTGCTATGCATTCTAG 59.006 41.667 3.54 0.00 41.91 2.43
2810 5452 4.342862 AATCCGTGCTATGCATTCTAGT 57.657 40.909 3.54 0.00 41.91 2.57
2811 5453 5.468540 AATCCGTGCTATGCATTCTAGTA 57.531 39.130 3.54 0.00 41.91 1.82
2813 5455 3.889538 TCCGTGCTATGCATTCTAGTAGT 59.110 43.478 3.54 0.00 41.91 2.73
2814 5456 5.067954 TCCGTGCTATGCATTCTAGTAGTA 58.932 41.667 3.54 0.00 41.91 1.82
2815 5457 5.533528 TCCGTGCTATGCATTCTAGTAGTAA 59.466 40.000 3.54 0.00 41.91 2.24
2816 5458 6.208797 TCCGTGCTATGCATTCTAGTAGTAAT 59.791 38.462 3.54 0.00 41.91 1.89
2857 5510 4.576463 AGGTTCAGCTAATCATTAAAGCGG 59.424 41.667 0.00 0.00 41.19 5.52
2862 5515 5.522460 TCAGCTAATCATTAAAGCGGTACAC 59.478 40.000 0.00 0.00 41.19 2.90
2870 5523 5.640357 TCATTAAAGCGGTACACTAAGTTGG 59.360 40.000 0.00 0.00 0.00 3.77
2877 5530 3.431207 CGGTACACTAAGTTGGTATGGGG 60.431 52.174 0.00 0.00 0.00 4.96
2935 5589 2.351738 CGCCCATTTCAACCTGAACTTC 60.352 50.000 0.00 0.00 35.89 3.01
2961 5615 0.745845 ATTCAGCACATCTGGTCGGC 60.746 55.000 0.00 0.00 43.06 5.54
3185 5904 1.750399 CAGGGGCCAGATTTGTCGG 60.750 63.158 4.39 0.00 0.00 4.79
3192 5911 4.109675 AGATTTGTCGGGGCGGGG 62.110 66.667 0.00 0.00 0.00 5.73
3193 5912 4.104183 GATTTGTCGGGGCGGGGA 62.104 66.667 0.00 0.00 0.00 4.81
3194 5913 4.109675 ATTTGTCGGGGCGGGGAG 62.110 66.667 0.00 0.00 0.00 4.30
3201 5920 3.157949 GGGGCGGGGAGAGAAGAG 61.158 72.222 0.00 0.00 0.00 2.85
3202 5921 3.157949 GGGCGGGGAGAGAAGAGG 61.158 72.222 0.00 0.00 0.00 3.69
3203 5922 3.157949 GGCGGGGAGAGAAGAGGG 61.158 72.222 0.00 0.00 0.00 4.30
3204 5923 3.855853 GCGGGGAGAGAAGAGGGC 61.856 72.222 0.00 0.00 0.00 5.19
3205 5924 3.532155 CGGGGAGAGAAGAGGGCG 61.532 72.222 0.00 0.00 0.00 6.13
3206 5925 2.042843 GGGGAGAGAAGAGGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
3207 5926 1.686110 GGGGAGAGAAGAGGGCGAA 60.686 63.158 0.00 0.00 0.00 4.70
3208 5927 1.518302 GGGAGAGAAGAGGGCGAAC 59.482 63.158 0.00 0.00 0.00 3.95
3209 5928 1.139947 GGAGAGAAGAGGGCGAACG 59.860 63.158 0.00 0.00 0.00 3.95
3210 5929 1.139947 GAGAGAAGAGGGCGAACGG 59.860 63.158 0.00 0.00 0.00 4.44
3211 5930 2.184579 GAGAAGAGGGCGAACGGG 59.815 66.667 0.00 0.00 0.00 5.28
3212 5931 4.083862 AGAAGAGGGCGAACGGGC 62.084 66.667 0.00 0.00 41.35 6.13
3220 5939 2.813908 GCGAACGGGCGAAGTGAT 60.814 61.111 3.29 0.00 0.00 3.06
3221 5940 1.517694 GCGAACGGGCGAAGTGATA 60.518 57.895 3.29 0.00 0.00 2.15
3222 5941 1.480219 GCGAACGGGCGAAGTGATAG 61.480 60.000 3.29 0.00 0.00 2.08
3223 5942 0.099968 CGAACGGGCGAAGTGATAGA 59.900 55.000 0.00 0.00 0.00 1.98
3224 5943 1.841450 GAACGGGCGAAGTGATAGAG 58.159 55.000 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.035449 TCGTCGATTGACCTCAGTTTGT 59.965 45.455 7.54 0.00 42.37 2.83
14 15 2.296471 AGTCGTCGATTGACCTCAGTTT 59.704 45.455 14.82 0.00 42.37 2.66
37 38 3.266541 CACAAACGTGCATCTGCTTAA 57.733 42.857 3.53 0.00 42.66 1.85
39 41 3.851620 CACAAACGTGCATCTGCTT 57.148 47.368 3.53 0.00 42.66 3.91
104 106 1.382522 AACATAGGATGCGTGCCAAG 58.617 50.000 0.00 0.00 0.00 3.61
192 194 1.336632 GGCAGAGTCAGCATCTCCCT 61.337 60.000 9.93 0.00 32.93 4.20
198 200 1.298993 CAGTGGGCAGAGTCAGCAT 59.701 57.895 9.93 0.00 0.00 3.79
219 221 9.047371 GGAGTATAAGAAAGTGCTCTTTTATCC 57.953 37.037 14.50 10.32 42.99 2.59
236 239 6.667558 ATTTAGGAACGGAGGGAGTATAAG 57.332 41.667 0.00 0.00 0.00 1.73
237 240 9.827198 TTATATTTAGGAACGGAGGGAGTATAA 57.173 33.333 0.00 0.00 0.00 0.98
238 241 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
239 242 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
240 243 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
241 244 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
242 245 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
243 246 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
244 247 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
245 248 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
246 249 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
247 250 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
248 251 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
249 252 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
260 263 9.829507 CATAGTGAAATCTCTCCAAAGACTTAT 57.170 33.333 0.00 0.00 0.00 1.73
261 264 8.260818 CCATAGTGAAATCTCTCCAAAGACTTA 58.739 37.037 0.00 0.00 0.00 2.24
262 265 7.038017 TCCATAGTGAAATCTCTCCAAAGACTT 60.038 37.037 0.00 0.00 0.00 3.01
263 266 6.441924 TCCATAGTGAAATCTCTCCAAAGACT 59.558 38.462 0.00 0.00 0.00 3.24
264 267 6.536941 GTCCATAGTGAAATCTCTCCAAAGAC 59.463 42.308 0.00 0.00 0.00 3.01
265 268 6.352222 GGTCCATAGTGAAATCTCTCCAAAGA 60.352 42.308 0.00 0.00 0.00 2.52
266 269 5.819901 GGTCCATAGTGAAATCTCTCCAAAG 59.180 44.000 0.00 0.00 0.00 2.77
267 270 5.250543 TGGTCCATAGTGAAATCTCTCCAAA 59.749 40.000 0.00 0.00 0.00 3.28
268 271 4.782691 TGGTCCATAGTGAAATCTCTCCAA 59.217 41.667 0.00 0.00 0.00 3.53
269 272 4.162320 GTGGTCCATAGTGAAATCTCTCCA 59.838 45.833 0.00 0.00 0.00 3.86
270 273 4.162320 TGTGGTCCATAGTGAAATCTCTCC 59.838 45.833 0.00 0.00 0.00 3.71
271 274 5.344743 TGTGGTCCATAGTGAAATCTCTC 57.655 43.478 0.00 0.00 0.00 3.20
272 275 5.965033 ATGTGGTCCATAGTGAAATCTCT 57.035 39.130 0.00 0.00 29.82 3.10
273 276 5.692204 CGTATGTGGTCCATAGTGAAATCTC 59.308 44.000 0.00 0.00 36.71 2.75
274 277 5.453339 CCGTATGTGGTCCATAGTGAAATCT 60.453 44.000 0.00 0.00 36.71 2.40
275 278 4.750098 CCGTATGTGGTCCATAGTGAAATC 59.250 45.833 0.00 0.00 36.71 2.17
276 279 4.407621 TCCGTATGTGGTCCATAGTGAAAT 59.592 41.667 0.00 0.00 36.71 2.17
277 280 3.770388 TCCGTATGTGGTCCATAGTGAAA 59.230 43.478 0.00 0.00 36.71 2.69
278 281 3.367321 TCCGTATGTGGTCCATAGTGAA 58.633 45.455 0.00 0.00 36.71 3.18
279 282 2.956333 CTCCGTATGTGGTCCATAGTGA 59.044 50.000 0.00 0.00 36.71 3.41
280 283 2.693591 ACTCCGTATGTGGTCCATAGTG 59.306 50.000 0.00 0.00 36.71 2.74
281 284 3.028094 ACTCCGTATGTGGTCCATAGT 57.972 47.619 0.00 0.00 36.71 2.12
282 285 5.524971 TTTACTCCGTATGTGGTCCATAG 57.475 43.478 0.00 0.00 36.71 2.23
283 286 5.936187 TTTTACTCCGTATGTGGTCCATA 57.064 39.130 0.00 0.00 34.86 2.74
284 287 4.829872 TTTTACTCCGTATGTGGTCCAT 57.170 40.909 0.00 0.00 37.58 3.41
285 288 4.223255 TCATTTTACTCCGTATGTGGTCCA 59.777 41.667 0.00 0.00 0.00 4.02
286 289 4.761975 TCATTTTACTCCGTATGTGGTCC 58.238 43.478 0.00 0.00 0.00 4.46
287 290 5.291128 CACTCATTTTACTCCGTATGTGGTC 59.709 44.000 0.00 0.00 0.00 4.02
288 291 5.046878 TCACTCATTTTACTCCGTATGTGGT 60.047 40.000 0.00 0.00 0.00 4.16
289 292 5.416083 TCACTCATTTTACTCCGTATGTGG 58.584 41.667 0.00 0.00 0.00 4.17
290 293 6.183360 GGTTCACTCATTTTACTCCGTATGTG 60.183 42.308 0.00 0.00 0.00 3.21
291 294 5.873164 GGTTCACTCATTTTACTCCGTATGT 59.127 40.000 0.00 0.00 0.00 2.29
292 295 6.106673 AGGTTCACTCATTTTACTCCGTATG 58.893 40.000 0.00 0.00 0.00 2.39
293 296 6.295719 AGGTTCACTCATTTTACTCCGTAT 57.704 37.500 0.00 0.00 0.00 3.06
294 297 5.733620 AGGTTCACTCATTTTACTCCGTA 57.266 39.130 0.00 0.00 0.00 4.02
295 298 4.618920 AGGTTCACTCATTTTACTCCGT 57.381 40.909 0.00 0.00 0.00 4.69
296 299 7.490000 AGTATAGGTTCACTCATTTTACTCCG 58.510 38.462 0.00 0.00 0.00 4.63
297 300 8.697292 AGAGTATAGGTTCACTCATTTTACTCC 58.303 37.037 4.70 0.00 42.99 3.85
304 307 9.331282 GCATTTTAGAGTATAGGTTCACTCATT 57.669 33.333 4.70 0.00 42.99 2.57
305 308 8.486210 TGCATTTTAGAGTATAGGTTCACTCAT 58.514 33.333 4.70 0.00 42.99 2.90
306 309 7.847096 TGCATTTTAGAGTATAGGTTCACTCA 58.153 34.615 4.70 0.00 42.99 3.41
307 310 8.894768 ATGCATTTTAGAGTATAGGTTCACTC 57.105 34.615 0.00 0.00 41.25 3.51
308 311 8.486210 TGATGCATTTTAGAGTATAGGTTCACT 58.514 33.333 0.00 0.00 0.00 3.41
309 312 8.662781 TGATGCATTTTAGAGTATAGGTTCAC 57.337 34.615 0.00 0.00 0.00 3.18
310 313 9.109393 GTTGATGCATTTTAGAGTATAGGTTCA 57.891 33.333 0.00 0.00 0.00 3.18
311 314 9.109393 TGTTGATGCATTTTAGAGTATAGGTTC 57.891 33.333 0.00 0.00 0.00 3.62
312 315 9.632638 ATGTTGATGCATTTTAGAGTATAGGTT 57.367 29.630 0.00 0.00 0.00 3.50
318 321 9.056005 GGATGTATGTTGATGCATTTTAGAGTA 57.944 33.333 0.00 0.00 35.26 2.59
319 322 7.254898 CGGATGTATGTTGATGCATTTTAGAGT 60.255 37.037 0.00 0.00 35.26 3.24
320 323 7.073883 CGGATGTATGTTGATGCATTTTAGAG 58.926 38.462 0.00 0.00 35.26 2.43
321 324 6.542005 ACGGATGTATGTTGATGCATTTTAGA 59.458 34.615 0.00 0.00 35.26 2.10
322 325 6.728200 ACGGATGTATGTTGATGCATTTTAG 58.272 36.000 0.00 0.00 35.26 1.85
323 326 6.691754 ACGGATGTATGTTGATGCATTTTA 57.308 33.333 0.00 0.00 35.26 1.52
324 327 5.581126 ACGGATGTATGTTGATGCATTTT 57.419 34.783 0.00 0.00 35.26 1.82
325 328 6.882610 ATACGGATGTATGTTGATGCATTT 57.117 33.333 0.00 0.00 39.81 2.32
337 340 5.047306 CACTATGGACCACATACGGATGTAT 60.047 44.000 14.23 4.48 44.82 2.29
338 341 4.279922 CACTATGGACCACATACGGATGTA 59.720 45.833 14.23 0.00 44.82 2.29
340 343 3.320826 TCACTATGGACCACATACGGATG 59.679 47.826 5.94 5.94 41.03 3.51
341 344 3.572642 TCACTATGGACCACATACGGAT 58.427 45.455 0.00 0.00 41.03 4.18
342 345 3.021177 TCACTATGGACCACATACGGA 57.979 47.619 0.00 0.00 41.03 4.69
343 346 3.812156 TTCACTATGGACCACATACGG 57.188 47.619 0.00 0.00 41.03 4.02
344 347 5.601662 AGATTTCACTATGGACCACATACG 58.398 41.667 0.00 0.00 41.03 3.06
345 348 6.821388 AGAGATTTCACTATGGACCACATAC 58.179 40.000 0.00 0.00 41.03 2.39
346 349 7.563556 TGTAGAGATTTCACTATGGACCACATA 59.436 37.037 0.00 0.00 41.03 2.29
347 350 5.965033 AGAGATTTCACTATGGACCACAT 57.035 39.130 0.00 0.00 43.68 3.21
348 351 5.719563 TGTAGAGATTTCACTATGGACCACA 59.280 40.000 0.00 0.00 0.00 4.17
349 352 6.222038 TGTAGAGATTTCACTATGGACCAC 57.778 41.667 0.00 0.00 0.00 4.16
350 353 6.867519 TTGTAGAGATTTCACTATGGACCA 57.132 37.500 0.00 0.00 0.00 4.02
351 354 7.492994 GTCTTTGTAGAGATTTCACTATGGACC 59.507 40.741 0.00 0.00 0.00 4.46
352 355 8.254508 AGTCTTTGTAGAGATTTCACTATGGAC 58.745 37.037 0.00 0.00 0.00 4.02
353 356 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
370 373 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
371 374 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
372 375 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
373 376 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
374 377 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
375 378 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
376 379 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
377 380 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
378 381 7.951806 TCATACTCCCTCCGTTCCTAAATATAA 59.048 37.037 0.00 0.00 0.00 0.98
379 382 7.472741 TCATACTCCCTCCGTTCCTAAATATA 58.527 38.462 0.00 0.00 0.00 0.86
380 383 6.320518 TCATACTCCCTCCGTTCCTAAATAT 58.679 40.000 0.00 0.00 0.00 1.28
381 384 5.708544 TCATACTCCCTCCGTTCCTAAATA 58.291 41.667 0.00 0.00 0.00 1.40
382 385 4.553678 TCATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
383 386 3.958798 CTCATACTCCCTCCGTTCCTAAA 59.041 47.826 0.00 0.00 0.00 1.85
384 387 3.053095 ACTCATACTCCCTCCGTTCCTAA 60.053 47.826 0.00 0.00 0.00 2.69
385 388 2.512896 ACTCATACTCCCTCCGTTCCTA 59.487 50.000 0.00 0.00 0.00 2.94
386 389 1.288335 ACTCATACTCCCTCCGTTCCT 59.712 52.381 0.00 0.00 0.00 3.36
387 390 1.777941 ACTCATACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
388 391 4.996788 TTAACTCATACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
389 392 5.247792 ACTTTTAACTCATACTCCCTCCGTT 59.752 40.000 0.00 0.00 0.00 4.44
390 393 4.776308 ACTTTTAACTCATACTCCCTCCGT 59.224 41.667 0.00 0.00 0.00 4.69
391 394 5.340439 ACTTTTAACTCATACTCCCTCCG 57.660 43.478 0.00 0.00 0.00 4.63
392 395 7.421087 ACTACTTTTAACTCATACTCCCTCC 57.579 40.000 0.00 0.00 0.00 4.30
393 396 9.722184 AAAACTACTTTTAACTCATACTCCCTC 57.278 33.333 0.00 0.00 0.00 4.30
424 427 4.021981 TGATCAGTGGACGGCTATGATAAG 60.022 45.833 3.84 0.00 30.98 1.73
425 428 3.895041 TGATCAGTGGACGGCTATGATAA 59.105 43.478 3.84 0.00 30.98 1.75
426 429 3.496331 TGATCAGTGGACGGCTATGATA 58.504 45.455 3.84 0.00 30.98 2.15
427 430 2.298446 CTGATCAGTGGACGGCTATGAT 59.702 50.000 14.95 3.53 33.44 2.45
428 431 1.683385 CTGATCAGTGGACGGCTATGA 59.317 52.381 14.95 0.00 0.00 2.15
429 432 1.269988 CCTGATCAGTGGACGGCTATG 60.270 57.143 21.11 0.00 0.00 2.23
430 433 1.043816 CCTGATCAGTGGACGGCTAT 58.956 55.000 21.11 0.00 0.00 2.97
431 434 1.043116 CCCTGATCAGTGGACGGCTA 61.043 60.000 21.11 0.00 0.00 3.93
432 435 2.362369 CCCTGATCAGTGGACGGCT 61.362 63.158 21.11 0.00 0.00 5.52
433 436 1.690219 ATCCCTGATCAGTGGACGGC 61.690 60.000 26.02 0.00 32.96 5.68
434 437 1.704641 TATCCCTGATCAGTGGACGG 58.295 55.000 26.02 18.02 32.96 4.79
435 438 2.695666 ACTTATCCCTGATCAGTGGACG 59.304 50.000 26.02 20.45 32.96 4.79
436 439 4.762289 AACTTATCCCTGATCAGTGGAC 57.238 45.455 26.02 0.00 32.96 4.02
437 440 4.782691 TCAAACTTATCCCTGATCAGTGGA 59.217 41.667 25.81 25.81 28.56 4.02
438 441 4.878397 GTCAAACTTATCCCTGATCAGTGG 59.122 45.833 21.11 19.93 28.56 4.00
439 442 4.878397 GGTCAAACTTATCCCTGATCAGTG 59.122 45.833 21.11 10.57 28.56 3.66
440 443 4.383118 CGGTCAAACTTATCCCTGATCAGT 60.383 45.833 21.11 5.78 29.06 3.41
441 444 4.122776 CGGTCAAACTTATCCCTGATCAG 58.877 47.826 16.24 16.24 0.00 2.90
442 445 3.517901 ACGGTCAAACTTATCCCTGATCA 59.482 43.478 0.00 0.00 0.00 2.92
443 446 4.138487 ACGGTCAAACTTATCCCTGATC 57.862 45.455 0.00 0.00 0.00 2.92
444 447 4.441079 CGTACGGTCAAACTTATCCCTGAT 60.441 45.833 7.57 0.00 0.00 2.90
445 448 3.119388 CGTACGGTCAAACTTATCCCTGA 60.119 47.826 7.57 0.00 0.00 3.86
446 449 3.119388 TCGTACGGTCAAACTTATCCCTG 60.119 47.826 16.52 0.00 0.00 4.45
447 450 3.091545 TCGTACGGTCAAACTTATCCCT 58.908 45.455 16.52 0.00 0.00 4.20
448 451 3.508744 TCGTACGGTCAAACTTATCCC 57.491 47.619 16.52 0.00 0.00 3.85
449 452 4.929781 AGATCGTACGGTCAAACTTATCC 58.070 43.478 28.89 0.00 0.00 2.59
450 453 6.882458 AAAGATCGTACGGTCAAACTTATC 57.118 37.500 28.89 14.25 0.00 1.75
451 454 7.662604 AAAAAGATCGTACGGTCAAACTTAT 57.337 32.000 28.89 4.82 0.00 1.73
452 455 7.867403 AGTAAAAAGATCGTACGGTCAAACTTA 59.133 33.333 28.89 16.84 0.00 2.24
453 456 5.996669 AAAAAGATCGTACGGTCAAACTT 57.003 34.783 28.89 12.63 0.00 2.66
454 457 6.218746 AGTAAAAAGATCGTACGGTCAAACT 58.781 36.000 28.89 19.44 0.00 2.66
455 458 6.457851 AGTAAAAAGATCGTACGGTCAAAC 57.542 37.500 28.89 17.77 0.00 2.93
456 459 8.649841 CATAAGTAAAAAGATCGTACGGTCAAA 58.350 33.333 28.89 7.63 0.00 2.69
457 460 7.276218 CCATAAGTAAAAAGATCGTACGGTCAA 59.724 37.037 28.89 3.87 0.00 3.18
458 461 6.753279 CCATAAGTAAAAAGATCGTACGGTCA 59.247 38.462 28.89 6.35 0.00 4.02
459 462 6.974622 TCCATAAGTAAAAAGATCGTACGGTC 59.025 38.462 20.87 20.87 0.00 4.79
460 463 6.866480 TCCATAAGTAAAAAGATCGTACGGT 58.134 36.000 16.52 8.53 0.00 4.83
461 464 7.760131 TTCCATAAGTAAAAAGATCGTACGG 57.240 36.000 16.52 0.00 0.00 4.02
462 465 8.866956 ACTTTCCATAAGTAAAAAGATCGTACG 58.133 33.333 9.53 9.53 33.85 3.67
465 468 9.893305 CAAACTTTCCATAAGTAAAAAGATCGT 57.107 29.630 0.00 0.00 33.85 3.73
466 469 9.341899 CCAAACTTTCCATAAGTAAAAAGATCG 57.658 33.333 0.00 0.00 33.85 3.69
469 472 9.810545 CAACCAAACTTTCCATAAGTAAAAAGA 57.189 29.630 0.00 0.00 33.85 2.52
470 473 9.594478 ACAACCAAACTTTCCATAAGTAAAAAG 57.406 29.630 0.00 0.00 35.38 2.27
471 474 9.589111 GACAACCAAACTTTCCATAAGTAAAAA 57.411 29.630 0.00 0.00 0.00 1.94
472 475 8.973182 AGACAACCAAACTTTCCATAAGTAAAA 58.027 29.630 0.00 0.00 0.00 1.52
473 476 8.410141 CAGACAACCAAACTTTCCATAAGTAAA 58.590 33.333 0.00 0.00 0.00 2.01
474 477 7.558444 ACAGACAACCAAACTTTCCATAAGTAA 59.442 33.333 0.00 0.00 0.00 2.24
475 478 7.057894 ACAGACAACCAAACTTTCCATAAGTA 58.942 34.615 0.00 0.00 0.00 2.24
476 479 5.891551 ACAGACAACCAAACTTTCCATAAGT 59.108 36.000 0.00 0.00 0.00 2.24
477 480 6.391227 ACAGACAACCAAACTTTCCATAAG 57.609 37.500 0.00 0.00 0.00 1.73
478 481 6.153680 ACAACAGACAACCAAACTTTCCATAA 59.846 34.615 0.00 0.00 0.00 1.90
479 482 5.654650 ACAACAGACAACCAAACTTTCCATA 59.345 36.000 0.00 0.00 0.00 2.74
480 483 4.466015 ACAACAGACAACCAAACTTTCCAT 59.534 37.500 0.00 0.00 0.00 3.41
481 484 3.829601 ACAACAGACAACCAAACTTTCCA 59.170 39.130 0.00 0.00 0.00 3.53
482 485 4.173256 CACAACAGACAACCAAACTTTCC 58.827 43.478 0.00 0.00 0.00 3.13
483 486 4.082463 TCCACAACAGACAACCAAACTTTC 60.082 41.667 0.00 0.00 0.00 2.62
484 487 3.829601 TCCACAACAGACAACCAAACTTT 59.170 39.130 0.00 0.00 0.00 2.66
485 488 3.426615 TCCACAACAGACAACCAAACTT 58.573 40.909 0.00 0.00 0.00 2.66
486 489 3.080300 TCCACAACAGACAACCAAACT 57.920 42.857 0.00 0.00 0.00 2.66
487 490 3.859411 TTCCACAACAGACAACCAAAC 57.141 42.857 0.00 0.00 0.00 2.93
488 491 4.082845 TCTTTCCACAACAGACAACCAAA 58.917 39.130 0.00 0.00 0.00 3.28
489 492 3.691575 TCTTTCCACAACAGACAACCAA 58.308 40.909 0.00 0.00 0.00 3.67
490 493 3.054728 TCTCTTTCCACAACAGACAACCA 60.055 43.478 0.00 0.00 0.00 3.67
491 494 3.541632 TCTCTTTCCACAACAGACAACC 58.458 45.455 0.00 0.00 0.00 3.77
492 495 4.636206 ACTTCTCTTTCCACAACAGACAAC 59.364 41.667 0.00 0.00 0.00 3.32
493 496 4.843728 ACTTCTCTTTCCACAACAGACAA 58.156 39.130 0.00 0.00 0.00 3.18
494 497 4.162320 AGACTTCTCTTTCCACAACAGACA 59.838 41.667 0.00 0.00 0.00 3.41
495 498 4.698575 AGACTTCTCTTTCCACAACAGAC 58.301 43.478 0.00 0.00 0.00 3.51
496 499 5.359194 AAGACTTCTCTTTCCACAACAGA 57.641 39.130 0.00 0.00 32.29 3.41
497 500 6.931281 TGATAAGACTTCTCTTTCCACAACAG 59.069 38.462 0.00 0.00 37.87 3.16
498 501 6.826668 TGATAAGACTTCTCTTTCCACAACA 58.173 36.000 0.00 0.00 37.87 3.33
499 502 7.155328 TCTGATAAGACTTCTCTTTCCACAAC 58.845 38.462 0.00 0.00 37.87 3.32
500 503 7.303182 TCTGATAAGACTTCTCTTTCCACAA 57.697 36.000 0.00 0.00 37.87 3.33
501 504 6.918067 TCTGATAAGACTTCTCTTTCCACA 57.082 37.500 0.00 0.00 37.87 4.17
502 505 6.309251 CGTTCTGATAAGACTTCTCTTTCCAC 59.691 42.308 0.00 0.00 37.87 4.02
503 506 6.390721 CGTTCTGATAAGACTTCTCTTTCCA 58.609 40.000 0.00 0.00 37.87 3.53
504 507 5.289917 GCGTTCTGATAAGACTTCTCTTTCC 59.710 44.000 0.00 0.00 37.87 3.13
505 508 5.864474 TGCGTTCTGATAAGACTTCTCTTTC 59.136 40.000 0.00 0.00 37.87 2.62
506 509 5.784177 TGCGTTCTGATAAGACTTCTCTTT 58.216 37.500 0.00 0.00 37.87 2.52
507 510 5.392767 TGCGTTCTGATAAGACTTCTCTT 57.607 39.130 0.00 0.00 40.13 2.85
508 511 5.047660 ACTTGCGTTCTGATAAGACTTCTCT 60.048 40.000 0.00 0.00 0.00 3.10
509 512 5.164954 ACTTGCGTTCTGATAAGACTTCTC 58.835 41.667 0.00 0.00 0.00 2.87
510 513 5.140747 ACTTGCGTTCTGATAAGACTTCT 57.859 39.130 0.00 0.00 0.00 2.85
511 514 5.847670 AACTTGCGTTCTGATAAGACTTC 57.152 39.130 0.00 0.00 0.00 3.01
512 515 6.483640 AGAAAACTTGCGTTCTGATAAGACTT 59.516 34.615 0.00 0.00 32.84 3.01
513 516 5.992217 AGAAAACTTGCGTTCTGATAAGACT 59.008 36.000 0.00 0.00 32.84 3.24
514 517 6.229561 AGAAAACTTGCGTTCTGATAAGAC 57.770 37.500 0.00 0.00 32.84 3.01
522 525 3.689649 ACTGAACAGAAAACTTGCGTTCT 59.310 39.130 8.87 0.00 37.46 3.01
523 526 4.016113 ACTGAACAGAAAACTTGCGTTC 57.984 40.909 8.87 0.00 37.16 3.95
524 527 4.434713 AACTGAACAGAAAACTTGCGTT 57.565 36.364 8.87 0.00 34.03 4.84
525 528 4.434713 AAACTGAACAGAAAACTTGCGT 57.565 36.364 8.87 0.00 0.00 5.24
526 529 6.690957 TGATTAAACTGAACAGAAAACTTGCG 59.309 34.615 8.87 0.00 0.00 4.85
527 530 7.985634 TGATTAAACTGAACAGAAAACTTGC 57.014 32.000 8.87 0.00 0.00 4.01
528 531 8.523464 CGTTGATTAAACTGAACAGAAAACTTG 58.477 33.333 8.87 0.00 36.56 3.16
529 532 8.455682 TCGTTGATTAAACTGAACAGAAAACTT 58.544 29.630 8.87 0.00 36.56 2.66
530 533 7.981142 TCGTTGATTAAACTGAACAGAAAACT 58.019 30.769 8.87 0.00 36.56 2.66
531 534 8.609478 TTCGTTGATTAAACTGAACAGAAAAC 57.391 30.769 8.87 0.77 36.56 2.43
532 535 9.627395 TTTTCGTTGATTAAACTGAACAGAAAA 57.373 25.926 8.87 0.00 36.56 2.29
533 536 9.627395 TTTTTCGTTGATTAAACTGAACAGAAA 57.373 25.926 8.87 0.00 36.56 2.52
586 590 3.945981 TCCGAATATGCTATAACCGCA 57.054 42.857 0.00 0.00 42.25 5.69
991 1093 2.818274 GGTTGACATCGCCCGTCC 60.818 66.667 0.00 0.00 32.15 4.79
1287 3619 8.635765 ATCAGCTTCATTAAGAGTAAAAACCA 57.364 30.769 0.00 0.00 34.37 3.67
1337 3669 3.877735 GCCAATACCCTGAGATTTGGTGT 60.878 47.826 0.00 0.00 39.21 4.16
2720 5357 6.523840 TGTTGAACCAGGTACGTATTAAACT 58.476 36.000 0.00 0.00 0.00 2.66
2721 5358 6.783892 TGTTGAACCAGGTACGTATTAAAC 57.216 37.500 0.00 0.00 0.00 2.01
2726 5363 3.244284 TGCTTGTTGAACCAGGTACGTAT 60.244 43.478 0.00 0.00 0.00 3.06
2727 5364 2.102757 TGCTTGTTGAACCAGGTACGTA 59.897 45.455 0.00 0.00 0.00 3.57
2728 5365 1.134340 TGCTTGTTGAACCAGGTACGT 60.134 47.619 0.00 0.00 0.00 3.57
2729 5366 1.263217 GTGCTTGTTGAACCAGGTACG 59.737 52.381 0.00 0.00 0.00 3.67
2730 5367 2.290641 CTGTGCTTGTTGAACCAGGTAC 59.709 50.000 0.00 0.00 0.00 3.34
2731 5368 2.571212 CTGTGCTTGTTGAACCAGGTA 58.429 47.619 0.00 0.00 0.00 3.08
2742 5379 1.134280 ACTGAAGTCTGCTGTGCTTGT 60.134 47.619 7.58 0.48 0.00 3.16
2751 5393 4.238514 ACTACGAATTGACTGAAGTCTGC 58.761 43.478 11.55 0.00 44.99 4.26
2752 5394 7.869016 TTTACTACGAATTGACTGAAGTCTG 57.131 36.000 11.55 0.00 44.99 3.51
2762 5404 4.819630 GCCCATGGATTTACTACGAATTGA 59.180 41.667 15.22 0.00 0.00 2.57
2763 5405 4.578516 TGCCCATGGATTTACTACGAATTG 59.421 41.667 15.22 0.00 0.00 2.32
2768 5410 3.469008 TCTGCCCATGGATTTACTACG 57.531 47.619 15.22 0.00 0.00 3.51
2772 5414 3.004734 CGGATTTCTGCCCATGGATTTAC 59.995 47.826 15.22 0.00 0.00 2.01
2773 5415 3.221771 CGGATTTCTGCCCATGGATTTA 58.778 45.455 15.22 0.00 0.00 1.40
2774 5416 2.034124 CGGATTTCTGCCCATGGATTT 58.966 47.619 15.22 0.00 0.00 2.17
2775 5417 1.063717 ACGGATTTCTGCCCATGGATT 60.064 47.619 15.22 0.00 0.00 3.01
2776 5418 0.552848 ACGGATTTCTGCCCATGGAT 59.447 50.000 15.22 0.00 0.00 3.41
2777 5419 0.394216 CACGGATTTCTGCCCATGGA 60.394 55.000 15.22 0.00 0.00 3.41
2778 5420 2.008268 GCACGGATTTCTGCCCATGG 62.008 60.000 4.14 4.14 0.00 3.66
2780 5422 0.546122 TAGCACGGATTTCTGCCCAT 59.454 50.000 0.00 0.00 33.57 4.00
2783 5425 0.308993 GCATAGCACGGATTTCTGCC 59.691 55.000 0.00 0.00 33.57 4.85
2784 5426 1.016627 TGCATAGCACGGATTTCTGC 58.983 50.000 0.00 0.00 31.71 4.26
2785 5427 3.562973 AGAATGCATAGCACGGATTTCTG 59.437 43.478 0.00 0.00 43.04 3.02
2787 5429 4.752101 ACTAGAATGCATAGCACGGATTTC 59.248 41.667 0.00 0.00 43.04 2.17
2788 5430 4.708177 ACTAGAATGCATAGCACGGATTT 58.292 39.130 0.00 0.00 43.04 2.17
2790 5432 4.524714 ACTACTAGAATGCATAGCACGGAT 59.475 41.667 0.00 0.00 43.04 4.18
2791 5433 3.889538 ACTACTAGAATGCATAGCACGGA 59.110 43.478 0.00 0.00 43.04 4.69
2826 5468 5.036117 TGATTAGCTGAACCTGGATTACC 57.964 43.478 0.00 0.00 0.00 2.85
2827 5469 8.677148 TTAATGATTAGCTGAACCTGGATTAC 57.323 34.615 0.00 0.00 0.00 1.89
2857 5510 5.425196 TTCCCCATACCAACTTAGTGTAC 57.575 43.478 0.00 0.00 0.00 2.90
2862 5515 3.963129 TGCTTTCCCCATACCAACTTAG 58.037 45.455 0.00 0.00 0.00 2.18
2935 5589 1.063649 GATGTGCTGAATGCGGCTG 59.936 57.895 5.96 0.00 46.76 4.85
3174 5850 2.824041 CCCGCCCCGACAAATCTG 60.824 66.667 0.00 0.00 0.00 2.90
3175 5851 4.109675 CCCCGCCCCGACAAATCT 62.110 66.667 0.00 0.00 0.00 2.40
3185 5904 3.157949 CCTCTTCTCTCCCCGCCC 61.158 72.222 0.00 0.00 0.00 6.13
3192 5911 1.139947 CCGTTCGCCCTCTTCTCTC 59.860 63.158 0.00 0.00 0.00 3.20
3193 5912 2.352032 CCCGTTCGCCCTCTTCTCT 61.352 63.158 0.00 0.00 0.00 3.10
3194 5913 2.184579 CCCGTTCGCCCTCTTCTC 59.815 66.667 0.00 0.00 0.00 2.87
3195 5914 4.083862 GCCCGTTCGCCCTCTTCT 62.084 66.667 0.00 0.00 0.00 2.85
3202 5921 2.894240 TATCACTTCGCCCGTTCGCC 62.894 60.000 0.00 0.00 0.00 5.54
3203 5922 1.480219 CTATCACTTCGCCCGTTCGC 61.480 60.000 0.00 0.00 0.00 4.70
3204 5923 0.099968 TCTATCACTTCGCCCGTTCG 59.900 55.000 0.00 0.00 0.00 3.95
3205 5924 1.841450 CTCTATCACTTCGCCCGTTC 58.159 55.000 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.