Multiple sequence alignment - TraesCS3D01G436300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G436300 chr3D 100.000 4462 0 0 1 4462 548465405 548460944 0.000000e+00 8240.0
1 TraesCS3D01G436300 chr3D 91.476 962 62 8 2989 3945 548402359 548401413 0.000000e+00 1304.0
2 TraesCS3D01G436300 chr3D 82.511 1601 158 60 600 2097 548478415 548476834 0.000000e+00 1293.0
3 TraesCS3D01G436300 chr3D 85.507 1311 94 31 2096 3375 548476795 548475550 0.000000e+00 1280.0
4 TraesCS3D01G436300 chr3D 85.007 687 65 18 3410 4082 548475548 548474886 0.000000e+00 664.0
5 TraesCS3D01G436300 chr3D 85.227 352 29 14 208 537 548478791 548478441 1.540000e-89 340.0
6 TraesCS3D01G436300 chr3D 85.062 241 16 5 3944 4183 548401319 548401098 1.250000e-55 228.0
7 TraesCS3D01G436300 chr3D 87.027 185 21 1 356 537 548483248 548483064 5.850000e-49 206.0
8 TraesCS3D01G436300 chr3D 95.968 124 3 2 4206 4328 329681755 329681877 2.720000e-47 200.0
9 TraesCS3D01G436300 chr3D 95.868 121 3 2 4209 4328 250054184 250054065 1.270000e-45 195.0
10 TraesCS3D01G436300 chr3D 95.238 105 3 1 4207 4311 595302396 595302294 9.930000e-37 165.0
11 TraesCS3D01G436300 chr3D 86.111 144 14 6 4184 4326 288669044 288669182 2.780000e-32 150.0
12 TraesCS3D01G436300 chr3D 95.556 90 4 0 115 204 548478916 548478827 1.290000e-30 145.0
13 TraesCS3D01G436300 chr3D 86.408 103 9 2 4208 4310 294047978 294047881 1.700000e-19 108.0
14 TraesCS3D01G436300 chr3D 86.000 100 12 2 993 1091 548482715 548482617 6.100000e-19 106.0
15 TraesCS3D01G436300 chr3D 100.000 48 0 0 4352 4399 329681876 329681923 6.150000e-14 89.8
16 TraesCS3D01G436300 chr3D 80.460 87 10 7 4183 4266 299539460 299539378 4.820000e-05 60.2
17 TraesCS3D01G436300 chr3B 82.870 2049 229 51 2096 4105 725854890 725852925 0.000000e+00 1727.0
18 TraesCS3D01G436300 chr3B 81.998 811 102 32 959 1747 725856108 725855320 0.000000e+00 649.0
19 TraesCS3D01G436300 chr3B 86.667 375 34 9 1736 2097 725855300 725854929 6.950000e-108 401.0
20 TraesCS3D01G436300 chr3B 76.227 652 132 13 2806 3450 726134054 726134689 1.550000e-84 324.0
21 TraesCS3D01G436300 chr3A 82.313 2058 218 53 2096 4105 685292387 685290428 0.000000e+00 1650.0
22 TraesCS3D01G436300 chr3A 86.459 997 83 14 2646 3617 685337425 685336456 0.000000e+00 1046.0
23 TraesCS3D01G436300 chr3A 81.323 862 117 32 909 1747 685293664 685292824 0.000000e+00 660.0
24 TraesCS3D01G436300 chr3A 79.665 954 150 25 2626 3566 685359646 685360568 0.000000e+00 647.0
25 TraesCS3D01G436300 chr3A 80.404 643 56 20 38 625 685339032 685338405 4.130000e-115 425.0
26 TraesCS3D01G436300 chr3A 87.003 377 30 11 1736 2097 685292804 685292432 1.490000e-109 407.0
27 TraesCS3D01G436300 chr3A 76.081 740 147 17 2770 3501 685780701 685781418 4.240000e-95 359.0
28 TraesCS3D01G436300 chr3A 81.250 352 55 8 1753 2094 685358987 685359337 1.580000e-69 274.0
29 TraesCS3D01G436300 chr3A 83.172 309 41 7 976 1283 685338411 685338113 5.690000e-69 272.0
30 TraesCS3D01G436300 chr3A 77.637 474 74 21 937 1398 685357945 685358398 4.430000e-65 259.0
31 TraesCS3D01G436300 chr3A 85.957 235 28 2 2380 2609 685337780 685337546 3.450000e-61 246.0
32 TraesCS3D01G436300 chr3A 83.412 211 19 5 3804 4009 685362460 685362659 9.860000e-42 182.0
33 TraesCS3D01G436300 chr3A 85.430 151 17 5 4180 4328 74230805 74230952 7.730000e-33 152.0
34 TraesCS3D01G436300 chr3A 81.081 185 18 7 274 443 685355944 685356126 1.010000e-26 132.0
35 TraesCS3D01G436300 chr3A 85.321 109 10 3 3863 3971 685336265 685336163 1.700000e-19 108.0
36 TraesCS3D01G436300 chr3A 89.535 86 8 1 3634 3718 685336408 685336323 1.700000e-19 108.0
37 TraesCS3D01G436300 chr3A 91.667 48 4 0 1359 1406 685338004 685337957 2.880000e-07 67.6
38 TraesCS3D01G436300 chr4B 95.868 121 3 2 4209 4328 54367162 54367043 1.270000e-45 195.0
39 TraesCS3D01G436300 chr4B 83.234 167 18 9 4165 4328 102467651 102467810 1.290000e-30 145.0
40 TraesCS3D01G436300 chr6D 93.798 129 6 2 4201 4328 449005346 449005219 4.550000e-45 193.0
41 TraesCS3D01G436300 chr6B 95.082 122 4 2 4209 4329 639991492 639991612 1.640000e-44 191.0
42 TraesCS3D01G436300 chr6B 92.157 102 8 0 4209 4310 603896890 603896789 1.290000e-30 145.0
43 TraesCS3D01G436300 chr5D 94.400 125 5 2 4205 4328 42949556 42949679 1.640000e-44 191.0
44 TraesCS3D01G436300 chr5D 92.424 132 8 2 4198 4328 127836915 127837045 2.120000e-43 187.0
45 TraesCS3D01G436300 chr5D 85.616 146 14 7 4184 4327 218510827 218510967 3.600000e-31 147.0
46 TraesCS3D01G436300 chr2A 92.366 131 10 0 4198 4328 389220996 389221126 2.120000e-43 187.0
47 TraesCS3D01G436300 chr7B 91.241 137 8 4 4194 4328 517104790 517104924 2.740000e-42 183.0
48 TraesCS3D01G436300 chr7B 93.137 102 5 2 4209 4310 713200633 713200534 1.000000e-31 148.0
49 TraesCS3D01G436300 chr7B 79.167 144 24 5 4167 4310 88559252 88559389 1.320000e-15 95.3
50 TraesCS3D01G436300 chr6A 97.059 102 3 0 4209 4310 115317249 115317350 5.930000e-39 172.0
51 TraesCS3D01G436300 chr4A 97.059 102 3 0 4209 4310 554788035 554787934 5.930000e-39 172.0
52 TraesCS3D01G436300 chr4A 94.340 106 3 3 4209 4311 267147986 267148091 4.620000e-35 159.0
53 TraesCS3D01G436300 chr1A 94.595 111 6 0 4200 4310 493207975 493208085 5.930000e-39 172.0
54 TraesCS3D01G436300 chr7A 85.345 116 9 7 4208 4320 651436408 651436298 3.650000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G436300 chr3D 548460944 548465405 4461 True 8240.000000 8240 100.000000 1 4462 1 chr3D.!!$R4 4461
1 TraesCS3D01G436300 chr3D 548401098 548402359 1261 True 766.000000 1304 88.269000 2989 4183 2 chr3D.!!$R6 1194
2 TraesCS3D01G436300 chr3D 548474886 548483248 8362 True 576.285714 1293 86.690714 115 4082 7 chr3D.!!$R7 3967
3 TraesCS3D01G436300 chr3B 725852925 725856108 3183 True 925.666667 1727 83.845000 959 4105 3 chr3B.!!$R1 3146
4 TraesCS3D01G436300 chr3B 726134054 726134689 635 False 324.000000 324 76.227000 2806 3450 1 chr3B.!!$F1 644
5 TraesCS3D01G436300 chr3A 685290428 685293664 3236 True 905.666667 1650 83.546333 909 4105 3 chr3A.!!$R1 3196
6 TraesCS3D01G436300 chr3A 685780701 685781418 717 False 359.000000 359 76.081000 2770 3501 1 chr3A.!!$F2 731
7 TraesCS3D01G436300 chr3A 685336163 685339032 2869 True 324.657143 1046 86.073571 38 3971 7 chr3A.!!$R2 3933
8 TraesCS3D01G436300 chr3A 685355944 685362659 6715 False 298.800000 647 80.609000 274 4009 5 chr3A.!!$F3 3735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.604780 GTGGGATGGAGATCATGCGG 60.605 60.0 0.00 0.0 43.98 5.69 F
24 25 0.610174 GATGGAGATCATGCGGCCTA 59.390 55.0 0.00 0.0 35.97 3.93 F
1003 6673 0.175760 GGCGTGCACCTTCTAGATGA 59.824 55.0 12.15 0.0 0.00 2.92 F
1099 6772 0.247736 CGCAGGGAGAGTAAGTGCTT 59.752 55.0 0.00 0.0 31.74 3.91 F
2905 9166 0.460987 GGCTCTCTCATCAACGTGGG 60.461 60.0 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1003 6673 1.168714 GTGCCTGCTCTTCGGAAATT 58.831 50.000 0.00 0.00 0.00 1.82 R
1652 7448 2.063774 GGAAAAGGTCCCCTCGTGA 58.936 57.895 0.00 0.00 41.10 4.35 R
2685 8898 0.108615 AGTGGCTGTAGCACGTGATC 60.109 55.000 22.23 8.03 44.36 2.92 R
3074 9335 2.226437 CACACTACAGTTGCCACAATCC 59.774 50.000 0.00 0.00 0.00 3.01 R
4381 12517 0.042131 ACATACTCCCTCCGTTCCCA 59.958 55.000 0.00 0.00 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.947660 CGTGGGATGGAGATCATGCG 60.948 60.000 0.00 0.00 43.98 4.73
20 21 0.604780 GTGGGATGGAGATCATGCGG 60.605 60.000 0.00 0.00 43.98 5.69
21 22 1.673665 GGGATGGAGATCATGCGGC 60.674 63.158 0.00 0.00 43.98 6.53
23 24 1.374190 GATGGAGATCATGCGGCCT 59.626 57.895 0.00 0.00 35.97 5.19
24 25 0.610174 GATGGAGATCATGCGGCCTA 59.390 55.000 0.00 0.00 35.97 3.93
26 27 1.294780 GGAGATCATGCGGCCTAGG 59.705 63.158 3.67 3.67 0.00 3.02
27 28 1.294780 GAGATCATGCGGCCTAGGG 59.705 63.158 11.72 0.00 0.00 3.53
28 29 2.177594 GAGATCATGCGGCCTAGGGG 62.178 65.000 11.72 0.00 0.00 4.79
69 70 1.135199 GCAGGGAACGTCAACGAGATA 60.135 52.381 9.88 0.00 43.02 1.98
73 74 4.091509 CAGGGAACGTCAACGAGATAAAAG 59.908 45.833 9.88 0.00 43.02 2.27
76 77 5.350640 GGGAACGTCAACGAGATAAAAGATT 59.649 40.000 9.88 0.00 43.02 2.40
77 78 6.128363 GGGAACGTCAACGAGATAAAAGATTT 60.128 38.462 9.88 0.00 43.02 2.17
80 81 7.279470 ACGTCAACGAGATAAAAGATTTCTC 57.721 36.000 9.88 0.00 43.02 2.87
81 82 6.866770 ACGTCAACGAGATAAAAGATTTCTCA 59.133 34.615 9.88 0.00 43.02 3.27
82 83 7.384115 ACGTCAACGAGATAAAAGATTTCTCAA 59.616 33.333 9.88 0.00 43.02 3.02
204 4423 4.778143 GCGGGTTGCTGATCCGGT 62.778 66.667 13.05 0.00 43.55 5.28
205 4424 2.897207 CGGGTTGCTGATCCGGTA 59.103 61.111 0.00 0.00 40.07 4.02
247 4498 4.380444 GCTGAACAGATTTTGCGGGATTTA 60.380 41.667 5.97 0.00 0.00 1.40
351 4632 4.554363 CTACTCCGACGGCCTGCG 62.554 72.222 9.66 3.84 0.00 5.18
378 4676 2.046023 CCAATGCACCGCCTCTCA 60.046 61.111 0.00 0.00 0.00 3.27
387 4693 2.179517 CGCCTCTCACGACCACTC 59.820 66.667 0.00 0.00 0.00 3.51
507 4855 3.068307 GGTATGTGTCCTTCTCGTGCTAT 59.932 47.826 0.00 0.00 0.00 2.97
508 4856 4.277672 GGTATGTGTCCTTCTCGTGCTATA 59.722 45.833 0.00 0.00 0.00 1.31
526 4874 5.304357 TGCTATAGTTTTGGATCTGGATCGA 59.696 40.000 0.84 0.00 38.69 3.59
550 4898 6.365520 AGACCAAAATTAAGGTTCTGTGTCT 58.634 36.000 3.50 0.00 38.50 3.41
552 4900 6.805713 ACCAAAATTAAGGTTCTGTGTCTTG 58.194 36.000 0.00 0.00 33.39 3.02
553 4901 6.379988 ACCAAAATTAAGGTTCTGTGTCTTGT 59.620 34.615 0.00 0.00 33.39 3.16
555 4903 7.416213 CCAAAATTAAGGTTCTGTGTCTTGTGA 60.416 37.037 0.00 0.00 0.00 3.58
586 4934 4.424626 TCGCACAGCACACAAAAATTTAA 58.575 34.783 0.00 0.00 0.00 1.52
588 4936 5.005203 TCGCACAGCACACAAAAATTTAAAG 59.995 36.000 0.00 0.00 0.00 1.85
596 4944 6.675728 GCACACAAAAATTTAAAGCCCGAAAA 60.676 34.615 0.00 0.00 0.00 2.29
639 4992 3.640967 GCCCTTGGTTATATTGCATTCCA 59.359 43.478 0.00 0.00 0.00 3.53
653 5006 6.899393 TTGCATTCCAGTTTCAATACTTCT 57.101 33.333 0.00 0.00 0.00 2.85
656 5009 5.644644 CATTCCAGTTTCAATACTTCTGGC 58.355 41.667 0.00 0.00 43.49 4.85
658 5011 4.326826 TCCAGTTTCAATACTTCTGGCTG 58.673 43.478 0.00 0.00 43.49 4.85
660 5013 4.154918 CCAGTTTCAATACTTCTGGCTGAC 59.845 45.833 0.00 0.00 39.02 3.51
661 5014 4.154918 CAGTTTCAATACTTCTGGCTGACC 59.845 45.833 0.00 0.00 0.00 4.02
662 5015 2.672961 TCAATACTTCTGGCTGACCG 57.327 50.000 0.00 0.00 39.70 4.79
665 5018 2.932614 CAATACTTCTGGCTGACCGAAG 59.067 50.000 12.47 12.47 44.83 3.79
666 5019 1.919240 TACTTCTGGCTGACCGAAGA 58.081 50.000 19.77 2.87 43.41 2.87
667 5020 1.270907 ACTTCTGGCTGACCGAAGAT 58.729 50.000 19.77 3.39 43.41 2.40
668 5021 1.066573 ACTTCTGGCTGACCGAAGATG 60.067 52.381 19.77 1.74 43.41 2.90
715 6335 5.059404 ACATTGGCCTTCGTTCTAATTTG 57.941 39.130 3.32 0.00 0.00 2.32
726 6350 7.309194 CCTTCGTTCTAATTTGGTGATTTCCTT 60.309 37.037 0.00 0.00 0.00 3.36
729 6353 8.417884 TCGTTCTAATTTGGTGATTTCCTTTTT 58.582 29.630 0.00 0.00 0.00 1.94
736 6360 7.800155 TTTGGTGATTTCCTTTTTGATTTCC 57.200 32.000 0.00 0.00 0.00 3.13
750 6374 0.611618 ATTTCCGAACATGGCCAGCA 60.612 50.000 13.05 0.00 0.00 4.41
765 6389 3.266964 GCAGCAGCGGTGAATCAA 58.733 55.556 20.69 0.00 32.22 2.57
768 6392 1.602668 GCAGCAGCGGTGAATCAAAAA 60.603 47.619 20.69 0.00 32.22 1.94
769 6393 2.322161 CAGCAGCGGTGAATCAAAAAG 58.678 47.619 20.69 0.00 32.22 2.27
770 6394 1.063031 GCAGCGGTGAATCAAAAAGC 58.937 50.000 20.69 0.00 0.00 3.51
771 6395 1.602668 GCAGCGGTGAATCAAAAAGCA 60.603 47.619 20.69 0.00 0.00 3.91
773 6397 3.319755 CAGCGGTGAATCAAAAAGCAAT 58.680 40.909 9.50 0.00 0.00 3.56
775 6399 3.005684 AGCGGTGAATCAAAAAGCAATGA 59.994 39.130 0.00 0.00 0.00 2.57
776 6400 3.365820 GCGGTGAATCAAAAAGCAATGAG 59.634 43.478 0.00 0.00 0.00 2.90
780 6404 6.168389 GGTGAATCAAAAAGCAATGAGGATT 58.832 36.000 0.00 0.00 0.00 3.01
781 6405 6.312180 GGTGAATCAAAAAGCAATGAGGATTC 59.688 38.462 0.00 0.00 39.50 2.52
783 6407 7.063074 GTGAATCAAAAAGCAATGAGGATTCTG 59.937 37.037 0.00 0.00 39.67 3.02
784 6408 5.395682 TCAAAAAGCAATGAGGATTCTGG 57.604 39.130 0.00 0.00 0.00 3.86
786 6410 6.009589 TCAAAAAGCAATGAGGATTCTGGTA 58.990 36.000 0.00 0.00 0.00 3.25
787 6411 6.493115 TCAAAAAGCAATGAGGATTCTGGTAA 59.507 34.615 0.00 0.00 0.00 2.85
788 6412 6.916360 AAAAGCAATGAGGATTCTGGTAAA 57.084 33.333 0.00 0.00 0.00 2.01
791 6430 6.313519 AGCAATGAGGATTCTGGTAAACTA 57.686 37.500 0.00 0.00 0.00 2.24
798 6437 6.897966 TGAGGATTCTGGTAAACTACTCATCT 59.102 38.462 0.00 0.00 0.00 2.90
810 6449 3.834813 ACTACTCATCTCTTCTGCCAACA 59.165 43.478 0.00 0.00 0.00 3.33
823 6462 2.620112 CCAACAAGCACTCTGCCGG 61.620 63.158 0.00 0.00 46.52 6.13
867 6509 0.880278 GACGAGGAGCACAACAAGCA 60.880 55.000 0.00 0.00 0.00 3.91
874 6516 2.454055 GAGCACAACAAGCAAGTTCAC 58.546 47.619 0.00 0.00 0.00 3.18
942 6611 1.736032 CGATCAGTGACGGGGAAGAAC 60.736 57.143 0.00 0.00 0.00 3.01
994 6664 2.972505 CTTCAACGGCGTGCACCT 60.973 61.111 15.70 0.00 0.00 4.00
1003 6673 0.175760 GGCGTGCACCTTCTAGATGA 59.824 55.000 12.15 0.00 0.00 2.92
1068 6738 2.287547 ACGCATTCATGGACAACACAAC 60.288 45.455 0.00 0.00 0.00 3.32
1097 6770 4.504132 CGCAGGGAGAGTAAGTGC 57.496 61.111 0.00 0.00 0.00 4.40
1099 6772 0.247736 CGCAGGGAGAGTAAGTGCTT 59.752 55.000 0.00 0.00 31.74 3.91
1169 6851 8.778059 TGGGGTCAACTAATATATTCTCTGTTT 58.222 33.333 0.00 0.00 0.00 2.83
1170 6852 9.057089 GGGGTCAACTAATATATTCTCTGTTTG 57.943 37.037 0.00 0.00 0.00 2.93
1188 6870 9.535270 CTCTGTTTGAATCTCGAGTTTAATTTC 57.465 33.333 13.13 7.89 0.00 2.17
1190 6872 7.857569 TGTTTGAATCTCGAGTTTAATTTCGT 58.142 30.769 13.13 0.00 37.99 3.85
1224 6906 7.067615 TGTTTACTTTCACTAGTTGAATGCCAA 59.932 33.333 14.89 9.94 43.99 4.52
1240 6923 4.652421 TGCCAATGCATTGTACCATAAG 57.348 40.909 31.87 18.03 44.23 1.73
1308 7058 9.054922 AGGTGTTAAGCAAATTAAAGTACGTAA 57.945 29.630 0.00 0.00 35.16 3.18
1336 7088 2.551032 GCTAACCGTTGTGCCTTAAAGT 59.449 45.455 0.00 0.00 0.00 2.66
1345 7099 4.529109 TGTGCCTTAAAGTAAATTGGGC 57.471 40.909 0.00 0.00 38.67 5.36
1346 7100 3.898123 TGTGCCTTAAAGTAAATTGGGCA 59.102 39.130 0.00 0.00 44.55 5.36
1361 7115 0.733150 GGGCATGCCTTTAGACGTTC 59.267 55.000 34.70 11.50 36.10 3.95
1373 7127 6.253942 GCCTTTAGACGTTCTCTTAGTCATTC 59.746 42.308 0.00 0.00 37.36 2.67
1441 7205 7.681939 ATTTTCCGCTTCTCATACTTTTACA 57.318 32.000 0.00 0.00 0.00 2.41
1630 7426 5.544176 TCAACTTAAGAGAGGACTTGTGGAT 59.456 40.000 10.09 0.00 0.00 3.41
1683 7676 4.257731 GACCTTTTCCTTCTGAGGTGATC 58.742 47.826 0.00 0.00 42.35 2.92
1686 7679 4.263243 CCTTTTCCTTCTGAGGTGATCACT 60.263 45.833 24.50 11.25 43.97 3.41
1688 7681 3.969287 TCCTTCTGAGGTGATCACTTG 57.031 47.619 24.50 12.37 43.97 3.16
1747 7740 2.111972 ACTTCTCCAGGGACCAGACTTA 59.888 50.000 0.00 0.00 0.00 2.24
1748 7741 3.246167 ACTTCTCCAGGGACCAGACTTAT 60.246 47.826 0.00 0.00 0.00 1.73
1749 7742 4.016479 ACTTCTCCAGGGACCAGACTTATA 60.016 45.833 0.00 0.00 0.00 0.98
1750 7743 4.620086 TCTCCAGGGACCAGACTTATAA 57.380 45.455 0.00 0.00 0.00 0.98
1751 7744 4.547671 TCTCCAGGGACCAGACTTATAAG 58.452 47.826 11.05 11.05 0.00 1.73
1815 7838 5.481615 TTTAATAGGGCCAAGGAATCCTT 57.518 39.130 9.08 9.08 45.88 3.36
1850 7873 9.486497 TGTTTACCGTTTGTATGACAAGTATTA 57.514 29.630 0.00 0.00 39.53 0.98
1993 8030 5.795766 ACTCGCATGTTACAAATTGTATCG 58.204 37.500 6.67 6.36 32.20 2.92
2145 8232 4.239428 AGGTCTACCTAACTCTCCAGAC 57.761 50.000 0.00 0.00 46.48 3.51
2150 8237 7.350389 AGGTCTACCTAACTCTCCAGACTATTA 59.650 40.741 0.00 0.00 46.48 0.98
2255 8350 4.788679 AGGTGCAGTTTTGTAGGTAGTTT 58.211 39.130 0.00 0.00 0.00 2.66
2256 8351 5.198207 AGGTGCAGTTTTGTAGGTAGTTTT 58.802 37.500 0.00 0.00 0.00 2.43
2257 8352 5.655090 AGGTGCAGTTTTGTAGGTAGTTTTT 59.345 36.000 0.00 0.00 0.00 1.94
2258 8353 5.746721 GGTGCAGTTTTGTAGGTAGTTTTTG 59.253 40.000 0.00 0.00 0.00 2.44
2259 8354 5.746721 GTGCAGTTTTGTAGGTAGTTTTTGG 59.253 40.000 0.00 0.00 0.00 3.28
2260 8355 4.743151 GCAGTTTTGTAGGTAGTTTTTGGC 59.257 41.667 0.00 0.00 0.00 4.52
2261 8356 5.451381 GCAGTTTTGTAGGTAGTTTTTGGCT 60.451 40.000 0.00 0.00 0.00 4.75
2262 8357 6.569780 CAGTTTTGTAGGTAGTTTTTGGCTT 58.430 36.000 0.00 0.00 0.00 4.35
2273 8368 3.107407 GTTTTTGGCTTTTTGCACATGC 58.893 40.909 0.00 0.00 45.15 4.06
2291 8386 2.436109 GCCCTGTGGACCACATGT 59.564 61.111 27.28 0.00 43.71 3.21
2303 8399 0.463204 CCACATGTGCAAAACCACCA 59.537 50.000 20.81 0.00 34.85 4.17
2313 8409 2.099427 GCAAAACCACCACCTAAACGAA 59.901 45.455 0.00 0.00 0.00 3.85
2317 8413 0.952010 CCACCACCTAAACGAACCCG 60.952 60.000 0.00 0.00 42.50 5.28
2325 8421 1.735571 CTAAACGAACCCGGTGAATGG 59.264 52.381 0.00 0.00 40.78 3.16
2327 8423 0.604511 AACGAACCCGGTGAATGGTC 60.605 55.000 0.00 0.00 40.78 4.02
2371 8467 3.056749 GCGGTCAGATACCCGATTCTATT 60.057 47.826 1.70 0.00 46.62 1.73
2438 8535 0.679640 TCGCCCCTAGGTGCATTTTG 60.680 55.000 16.93 0.00 43.91 2.44
2439 8536 0.965363 CGCCCCTAGGTGCATTTTGT 60.965 55.000 16.93 0.00 36.70 2.83
2443 8540 3.697166 CCCCTAGGTGCATTTTGTTAGT 58.303 45.455 8.29 0.00 0.00 2.24
2445 8542 5.258051 CCCCTAGGTGCATTTTGTTAGTTA 58.742 41.667 8.29 0.00 0.00 2.24
2461 8558 7.633193 TGTTAGTTAGTTTTTCCACATGTGT 57.367 32.000 23.79 6.60 0.00 3.72
2524 8621 5.593909 CCCAGTGAATGATTTAGGCAACATA 59.406 40.000 0.00 0.00 41.41 2.29
2569 8668 4.529446 CGATTCTAAAGACTAGCCTCGAC 58.471 47.826 0.00 0.00 0.00 4.20
2670 8876 5.354767 TCACATGCATAGAACAGATGAGAC 58.645 41.667 0.00 0.00 0.00 3.36
2683 8896 4.142204 ACAGATGAGACTACGTACTCTCGA 60.142 45.833 20.40 13.34 36.47 4.04
2684 8897 4.986034 CAGATGAGACTACGTACTCTCGAT 59.014 45.833 20.40 16.12 36.47 3.59
2685 8898 4.986034 AGATGAGACTACGTACTCTCGATG 59.014 45.833 20.40 1.29 36.47 3.84
2699 8915 2.032178 TCTCGATGATCACGTGCTACAG 59.968 50.000 11.67 0.49 0.00 2.74
2709 8925 1.548719 ACGTGCTACAGCCACTTCATA 59.451 47.619 0.00 0.00 41.18 2.15
2768 9004 3.565482 TCTGTTCAGCTTGTTCATCAACC 59.435 43.478 0.00 0.00 32.18 3.77
2901 9162 1.751351 TGTAGGGCTCTCTCATCAACG 59.249 52.381 0.00 0.00 0.00 4.10
2905 9166 0.460987 GGCTCTCTCATCAACGTGGG 60.461 60.000 0.00 0.00 0.00 4.61
2911 9172 2.034066 CATCAACGTGGGTGGCCT 59.966 61.111 3.32 0.00 0.00 5.19
2942 9203 7.094634 CGAGGGATTAATTTTCTGGGTGATATG 60.095 40.741 0.00 0.00 0.00 1.78
3058 9319 2.268298 GCGGAATCGTAGTGTGTTCAT 58.732 47.619 0.00 0.00 38.89 2.57
3084 9345 3.518035 TCCATGGGGATTGTGGCA 58.482 55.556 13.02 0.00 38.64 4.92
3085 9346 1.779653 TCCATGGGGATTGTGGCAA 59.220 52.632 13.02 0.00 38.64 4.52
3086 9347 0.614415 TCCATGGGGATTGTGGCAAC 60.614 55.000 13.02 0.00 38.64 4.17
3087 9348 0.615544 CCATGGGGATTGTGGCAACT 60.616 55.000 2.85 0.00 35.59 3.16
3088 9349 0.533491 CATGGGGATTGTGGCAACTG 59.467 55.000 0.00 0.00 37.61 3.16
3089 9350 0.114954 ATGGGGATTGTGGCAACTGT 59.885 50.000 0.00 0.00 37.61 3.55
3090 9351 0.774276 TGGGGATTGTGGCAACTGTA 59.226 50.000 0.00 0.00 37.61 2.74
3091 9352 1.271871 TGGGGATTGTGGCAACTGTAG 60.272 52.381 0.00 0.00 37.61 2.74
3092 9353 1.271926 GGGGATTGTGGCAACTGTAGT 60.272 52.381 0.00 0.00 37.61 2.73
3093 9354 1.812571 GGGATTGTGGCAACTGTAGTG 59.187 52.381 0.00 0.00 37.61 2.74
3094 9355 2.504367 GGATTGTGGCAACTGTAGTGT 58.496 47.619 0.00 0.00 37.61 3.55
3095 9356 2.226437 GGATTGTGGCAACTGTAGTGTG 59.774 50.000 0.00 0.00 37.61 3.82
3096 9357 2.411628 TTGTGGCAACTGTAGTGTGT 57.588 45.000 0.00 0.00 37.61 3.72
3097 9358 2.411628 TGTGGCAACTGTAGTGTGTT 57.588 45.000 0.00 0.00 37.61 3.32
3098 9359 2.285083 TGTGGCAACTGTAGTGTGTTC 58.715 47.619 0.00 0.00 37.61 3.18
3099 9360 2.285083 GTGGCAACTGTAGTGTGTTCA 58.715 47.619 0.00 0.00 37.61 3.18
3225 9486 5.232463 CCAGTGGGTTGAATGAAGAAATTG 58.768 41.667 0.00 0.00 0.00 2.32
3379 9640 0.821301 TTCAATGCTGGCAACCACGA 60.821 50.000 0.00 0.00 0.00 4.35
3437 9698 3.540314 ATCTCAGTGAAGGTGATCTGC 57.460 47.619 0.00 0.00 0.00 4.26
3525 9789 6.238374 CGAGAAGTGGTGAATGTAACAAGTTT 60.238 38.462 0.00 0.00 0.00 2.66
3618 11603 5.648960 TCGAACTAGTGTCCATGTATGTACA 59.351 40.000 0.00 0.00 40.98 2.90
3720 11739 4.194640 CAGCTAATTCTAAAGCCTGCTGA 58.805 43.478 0.00 0.00 46.40 4.26
3726 11746 7.859875 GCTAATTCTAAAGCCTGCTGATAAAAG 59.140 37.037 0.00 0.00 32.40 2.27
3732 11753 2.843113 AGCCTGCTGATAAAAGAGGTCT 59.157 45.455 0.00 0.00 0.00 3.85
3785 11810 0.846427 TGCCTGGTGGAGAAGGGAAT 60.846 55.000 0.00 0.00 33.87 3.01
3786 11811 1.213296 GCCTGGTGGAGAAGGGAATA 58.787 55.000 0.00 0.00 33.87 1.75
3787 11812 1.777272 GCCTGGTGGAGAAGGGAATAT 59.223 52.381 0.00 0.00 33.87 1.28
3816 11843 3.726607 CTGAGGAAGGTGATGATACTGC 58.273 50.000 0.00 0.00 0.00 4.40
3818 11845 3.133542 TGAGGAAGGTGATGATACTGCAG 59.866 47.826 13.48 13.48 0.00 4.41
3854 11881 7.173390 ACAGGTAAGTTGTTTGAGATAAGCTTC 59.827 37.037 0.00 0.00 0.00 3.86
3894 11921 0.698818 CCCCTAGTTTTGCTCCCAGT 59.301 55.000 0.00 0.00 0.00 4.00
3933 11969 4.574421 TGATGACAAAATGACTCGTGTGTT 59.426 37.500 0.00 0.00 0.00 3.32
4056 12191 5.122239 TGAGAGGTGTTGAATTTTATCTGCG 59.878 40.000 0.00 0.00 0.00 5.18
4073 12208 1.244816 GCGTCTTGTTAAAGGGCCTT 58.755 50.000 14.48 14.48 33.90 4.35
4105 12240 9.274206 TGCTTTTGTAGTTTGTATGTATGTACA 57.726 29.630 0.00 0.00 40.98 2.90
4137 12272 6.690194 ATACCGTACGTTGAAGAAGAGTAT 57.310 37.500 15.21 7.48 0.00 2.12
4152 12288 7.125792 AGAAGAGTATAAAGTATGGTGTGGG 57.874 40.000 0.00 0.00 0.00 4.61
4160 12296 1.695242 AGTATGGTGTGGGTCGTCAAA 59.305 47.619 0.00 0.00 0.00 2.69
4189 12325 9.772605 AGGATATCACTCTGATATTTGAGATCT 57.227 33.333 4.83 0.00 46.75 2.75
4194 12330 8.539117 TCACTCTGATATTTGAGATCTAACCA 57.461 34.615 0.00 0.00 34.65 3.67
4195 12331 9.152327 TCACTCTGATATTTGAGATCTAACCAT 57.848 33.333 0.00 0.00 34.65 3.55
4196 12332 9.205719 CACTCTGATATTTGAGATCTAACCATG 57.794 37.037 0.00 0.00 34.65 3.66
4197 12333 7.877097 ACTCTGATATTTGAGATCTAACCATGC 59.123 37.037 0.00 0.00 34.65 4.06
4198 12334 7.164122 TCTGATATTTGAGATCTAACCATGCC 58.836 38.462 0.00 0.00 0.00 4.40
4199 12335 7.016957 TCTGATATTTGAGATCTAACCATGCCT 59.983 37.037 0.00 0.00 0.00 4.75
4200 12336 8.206126 TGATATTTGAGATCTAACCATGCCTA 57.794 34.615 0.00 0.00 0.00 3.93
4201 12337 8.829746 TGATATTTGAGATCTAACCATGCCTAT 58.170 33.333 0.00 0.00 0.00 2.57
4202 12338 9.107177 GATATTTGAGATCTAACCATGCCTATG 57.893 37.037 0.00 0.00 0.00 2.23
4203 12339 5.894298 TTGAGATCTAACCATGCCTATGT 57.106 39.130 0.00 0.00 32.21 2.29
4204 12340 5.219343 TGAGATCTAACCATGCCTATGTG 57.781 43.478 0.00 0.00 32.21 3.21
4205 12341 4.901250 TGAGATCTAACCATGCCTATGTGA 59.099 41.667 0.00 0.00 32.21 3.58
4206 12342 5.545335 TGAGATCTAACCATGCCTATGTGAT 59.455 40.000 0.00 0.00 32.21 3.06
4207 12343 6.047511 AGATCTAACCATGCCTATGTGATC 57.952 41.667 0.00 0.00 32.21 2.92
4208 12344 5.784390 AGATCTAACCATGCCTATGTGATCT 59.216 40.000 0.00 0.00 34.39 2.75
4209 12345 6.956435 AGATCTAACCATGCCTATGTGATCTA 59.044 38.462 0.00 0.00 35.71 1.98
4210 12346 6.346477 TCTAACCATGCCTATGTGATCTAC 57.654 41.667 0.00 0.00 32.21 2.59
4211 12347 6.077993 TCTAACCATGCCTATGTGATCTACT 58.922 40.000 0.00 0.00 32.21 2.57
4212 12348 4.881019 ACCATGCCTATGTGATCTACTC 57.119 45.455 0.00 0.00 32.21 2.59
4213 12349 3.580458 ACCATGCCTATGTGATCTACTCC 59.420 47.826 0.00 0.00 32.21 3.85
4214 12350 3.055530 CCATGCCTATGTGATCTACTCCC 60.056 52.174 0.00 0.00 32.21 4.30
4215 12351 3.619900 TGCCTATGTGATCTACTCCCT 57.380 47.619 0.00 0.00 0.00 4.20
4216 12352 3.501349 TGCCTATGTGATCTACTCCCTC 58.499 50.000 0.00 0.00 0.00 4.30
4217 12353 2.829120 GCCTATGTGATCTACTCCCTCC 59.171 54.545 0.00 0.00 0.00 4.30
4218 12354 3.085533 CCTATGTGATCTACTCCCTCCG 58.914 54.545 0.00 0.00 0.00 4.63
4219 12355 2.757894 ATGTGATCTACTCCCTCCGT 57.242 50.000 0.00 0.00 0.00 4.69
4220 12356 2.526888 TGTGATCTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
4221 12357 2.376109 TGTGATCTACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
4222 12358 1.682323 GTGATCTACTCCCTCCGTTCC 59.318 57.143 0.00 0.00 0.00 3.62
4223 12359 1.569548 TGATCTACTCCCTCCGTTCCT 59.430 52.381 0.00 0.00 0.00 3.36
4224 12360 2.781757 TGATCTACTCCCTCCGTTCCTA 59.218 50.000 0.00 0.00 0.00 2.94
4225 12361 3.203710 TGATCTACTCCCTCCGTTCCTAA 59.796 47.826 0.00 0.00 0.00 2.69
4226 12362 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
4227 12363 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
4228 12364 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
4229 12365 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
4230 12366 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
4231 12367 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
4232 12368 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4233 12369 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4234 12370 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4235 12371 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4236 12372 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4237 12373 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4238 12374 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4239 12375 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4254 12390 9.893305 ATAAGTCTTTTTAGACATTTCAAACGG 57.107 29.630 7.92 0.00 41.02 4.44
4255 12391 7.562454 AGTCTTTTTAGACATTTCAAACGGA 57.438 32.000 7.92 0.00 41.02 4.69
4256 12392 7.992008 AGTCTTTTTAGACATTTCAAACGGAA 58.008 30.769 7.92 0.00 41.02 4.30
4257 12393 8.630037 AGTCTTTTTAGACATTTCAAACGGAAT 58.370 29.630 7.92 0.00 41.02 3.01
4258 12394 9.887406 GTCTTTTTAGACATTTCAAACGGAATA 57.113 29.630 0.00 0.00 38.59 1.75
4259 12395 9.887406 TCTTTTTAGACATTTCAAACGGAATAC 57.113 29.630 0.00 0.00 34.91 1.89
4260 12396 9.672086 CTTTTTAGACATTTCAAACGGAATACA 57.328 29.630 0.00 0.00 34.91 2.29
4262 12398 9.453325 TTTTAGACATTTCAAACGGAATACAAC 57.547 29.630 0.00 0.00 34.91 3.32
4263 12399 6.627395 AGACATTTCAAACGGAATACAACA 57.373 33.333 0.00 0.00 34.91 3.33
4264 12400 7.214467 AGACATTTCAAACGGAATACAACAT 57.786 32.000 0.00 0.00 34.91 2.71
4265 12401 8.330466 AGACATTTCAAACGGAATACAACATA 57.670 30.769 0.00 0.00 34.91 2.29
4266 12402 8.956426 AGACATTTCAAACGGAATACAACATAT 58.044 29.630 0.00 0.00 34.91 1.78
4267 12403 8.909708 ACATTTCAAACGGAATACAACATATG 57.090 30.769 0.00 0.00 34.91 1.78
4268 12404 7.973388 ACATTTCAAACGGAATACAACATATGG 59.027 33.333 7.80 0.00 34.91 2.74
4269 12405 7.689446 TTTCAAACGGAATACAACATATGGA 57.311 32.000 7.80 0.00 34.91 3.41
4270 12406 7.873719 TTCAAACGGAATACAACATATGGAT 57.126 32.000 7.80 0.00 32.25 3.41
4271 12407 7.258022 TCAAACGGAATACAACATATGGATG 57.742 36.000 7.80 8.32 39.16 3.51
4273 12409 7.988028 TCAAACGGAATACAACATATGGATGTA 59.012 33.333 19.63 19.63 45.93 2.29
4274 12410 8.783093 CAAACGGAATACAACATATGGATGTAT 58.217 33.333 21.51 21.51 45.93 2.29
4275 12411 7.905604 ACGGAATACAACATATGGATGTATG 57.094 36.000 25.04 18.64 45.93 2.39
4276 12412 7.450074 ACGGAATACAACATATGGATGTATGT 58.550 34.615 25.04 19.06 45.93 2.29
4277 12413 8.590204 ACGGAATACAACATATGGATGTATGTA 58.410 33.333 25.04 15.96 45.93 2.29
4278 12414 9.087424 CGGAATACAACATATGGATGTATGTAG 57.913 37.037 25.04 18.26 45.93 2.74
4315 12451 8.954950 AGTGTAGATTCACTCATTTTATCCTG 57.045 34.615 0.00 0.00 44.07 3.86
4316 12452 8.543774 AGTGTAGATTCACTCATTTTATCCTGT 58.456 33.333 0.00 0.00 44.07 4.00
4317 12453 9.817809 GTGTAGATTCACTCATTTTATCCTGTA 57.182 33.333 0.00 0.00 35.68 2.74
4329 12465 9.778741 TCATTTTATCCTGTATGTAATCACTCC 57.221 33.333 0.00 0.00 0.00 3.85
4330 12466 8.712363 CATTTTATCCTGTATGTAATCACTCCG 58.288 37.037 0.00 0.00 0.00 4.63
4331 12467 7.591421 TTTATCCTGTATGTAATCACTCCGA 57.409 36.000 0.00 0.00 0.00 4.55
4332 12468 5.713792 ATCCTGTATGTAATCACTCCGAG 57.286 43.478 0.00 0.00 0.00 4.63
4333 12469 4.788679 TCCTGTATGTAATCACTCCGAGA 58.211 43.478 1.33 0.00 0.00 4.04
4334 12470 4.822350 TCCTGTATGTAATCACTCCGAGAG 59.178 45.833 1.33 0.00 35.52 3.20
4335 12471 4.541779 CTGTATGTAATCACTCCGAGAGC 58.458 47.826 1.33 0.00 32.04 4.09
4336 12472 4.207955 TGTATGTAATCACTCCGAGAGCT 58.792 43.478 1.33 0.00 32.04 4.09
4337 12473 4.276183 TGTATGTAATCACTCCGAGAGCTC 59.724 45.833 5.27 5.27 32.04 4.09
4338 12474 3.006112 TGTAATCACTCCGAGAGCTCT 57.994 47.619 18.28 18.28 32.04 4.09
4339 12475 4.152284 TGTAATCACTCCGAGAGCTCTA 57.848 45.455 18.25 0.00 32.04 2.43
4340 12476 4.524053 TGTAATCACTCCGAGAGCTCTAA 58.476 43.478 18.25 4.43 32.04 2.10
4341 12477 4.948004 TGTAATCACTCCGAGAGCTCTAAA 59.052 41.667 18.25 4.04 32.04 1.85
4342 12478 5.594725 TGTAATCACTCCGAGAGCTCTAAAT 59.405 40.000 18.25 0.00 32.04 1.40
4343 12479 4.846779 ATCACTCCGAGAGCTCTAAATC 57.153 45.455 18.25 3.10 32.04 2.17
4344 12480 2.952978 TCACTCCGAGAGCTCTAAATCC 59.047 50.000 18.25 2.35 32.04 3.01
4345 12481 2.955660 CACTCCGAGAGCTCTAAATCCT 59.044 50.000 18.25 0.00 32.04 3.24
4346 12482 3.004315 CACTCCGAGAGCTCTAAATCCTC 59.996 52.174 18.25 1.04 32.04 3.71
4347 12483 2.222886 TCCGAGAGCTCTAAATCCTCG 58.777 52.381 18.25 14.00 44.25 4.63
4348 12484 1.950909 CCGAGAGCTCTAAATCCTCGT 59.049 52.381 18.25 0.00 43.45 4.18
4349 12485 2.031508 CCGAGAGCTCTAAATCCTCGTC 60.032 54.545 18.25 0.00 43.45 4.20
4350 12486 2.031508 CGAGAGCTCTAAATCCTCGTCC 60.032 54.545 18.25 0.00 41.02 4.79
4351 12487 2.295070 GAGAGCTCTAAATCCTCGTCCC 59.705 54.545 18.25 0.00 0.00 4.46
4352 12488 2.091555 AGAGCTCTAAATCCTCGTCCCT 60.092 50.000 16.50 0.00 0.00 4.20
4353 12489 2.696187 GAGCTCTAAATCCTCGTCCCTT 59.304 50.000 6.43 0.00 0.00 3.95
4354 12490 2.432510 AGCTCTAAATCCTCGTCCCTTG 59.567 50.000 0.00 0.00 0.00 3.61
4355 12491 2.483889 GCTCTAAATCCTCGTCCCTTGG 60.484 54.545 0.00 0.00 0.00 3.61
4356 12492 2.766828 CTCTAAATCCTCGTCCCTTGGT 59.233 50.000 0.00 0.00 0.00 3.67
4357 12493 2.500098 TCTAAATCCTCGTCCCTTGGTG 59.500 50.000 0.00 0.00 0.00 4.17
4358 12494 0.328258 AAATCCTCGTCCCTTGGTGG 59.672 55.000 0.00 0.00 0.00 4.61
4359 12495 0.546747 AATCCTCGTCCCTTGGTGGA 60.547 55.000 0.00 0.00 38.35 4.02
4360 12496 0.546747 ATCCTCGTCCCTTGGTGGAA 60.547 55.000 0.00 0.00 35.80 3.53
4361 12497 0.546747 TCCTCGTCCCTTGGTGGAAT 60.547 55.000 0.00 0.00 35.80 3.01
4362 12498 0.107654 CCTCGTCCCTTGGTGGAATC 60.108 60.000 0.00 0.00 35.80 2.52
4363 12499 0.905357 CTCGTCCCTTGGTGGAATCT 59.095 55.000 0.00 0.00 35.80 2.40
4364 12500 0.902531 TCGTCCCTTGGTGGAATCTC 59.097 55.000 0.00 0.00 35.80 2.75
4365 12501 0.905357 CGTCCCTTGGTGGAATCTCT 59.095 55.000 0.00 0.00 35.80 3.10
4366 12502 2.108168 CGTCCCTTGGTGGAATCTCTA 58.892 52.381 0.00 0.00 35.80 2.43
4367 12503 2.101582 CGTCCCTTGGTGGAATCTCTAG 59.898 54.545 0.00 0.00 35.80 2.43
4368 12504 3.375699 GTCCCTTGGTGGAATCTCTAGA 58.624 50.000 0.00 0.00 35.80 2.43
4369 12505 3.775316 GTCCCTTGGTGGAATCTCTAGAA 59.225 47.826 0.00 0.00 35.80 2.10
4370 12506 4.225267 GTCCCTTGGTGGAATCTCTAGAAA 59.775 45.833 0.00 0.00 35.80 2.52
4371 12507 4.471386 TCCCTTGGTGGAATCTCTAGAAAG 59.529 45.833 0.00 0.00 38.35 2.62
4372 12508 4.471386 CCCTTGGTGGAATCTCTAGAAAGA 59.529 45.833 0.00 0.00 38.35 2.52
4373 12509 5.423886 CCTTGGTGGAATCTCTAGAAAGAC 58.576 45.833 0.00 0.00 38.35 3.01
4374 12510 5.188751 CCTTGGTGGAATCTCTAGAAAGACT 59.811 44.000 0.00 0.00 38.35 3.24
4375 12511 6.296145 CCTTGGTGGAATCTCTAGAAAGACTT 60.296 42.308 0.00 0.00 38.35 3.01
4376 12512 7.093289 CCTTGGTGGAATCTCTAGAAAGACTTA 60.093 40.741 0.00 0.00 38.35 2.24
4377 12513 7.979786 TGGTGGAATCTCTAGAAAGACTTAT 57.020 36.000 0.00 0.00 0.00 1.73
4378 12514 9.488762 TTGGTGGAATCTCTAGAAAGACTTATA 57.511 33.333 0.00 0.00 0.00 0.98
4379 12515 9.661954 TGGTGGAATCTCTAGAAAGACTTATAT 57.338 33.333 0.00 0.00 0.00 0.86
4388 12524 9.250624 CTCTAGAAAGACTTATATTTGGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
4389 12525 8.202137 TCTAGAAAGACTTATATTTGGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
4390 12526 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
4391 12527 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
4392 12528 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
4393 12529 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
4394 12530 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
4395 12531 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
4396 12532 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4397 12533 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4398 12534 1.961133 TTTGGGAACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
4399 12535 1.200519 TTGGGAACGGAGGGAGTATG 58.799 55.000 0.00 0.00 0.00 2.39
4400 12536 0.042131 TGGGAACGGAGGGAGTATGT 59.958 55.000 0.00 0.00 0.00 2.29
4401 12537 0.464452 GGGAACGGAGGGAGTATGTG 59.536 60.000 0.00 0.00 0.00 3.21
4402 12538 1.481871 GGAACGGAGGGAGTATGTGA 58.518 55.000 0.00 0.00 0.00 3.58
4403 12539 1.136500 GGAACGGAGGGAGTATGTGAC 59.864 57.143 0.00 0.00 0.00 3.67
4404 12540 2.100989 GAACGGAGGGAGTATGTGACT 58.899 52.381 0.00 0.00 42.90 3.41
4412 12548 2.586258 GAGTATGTGACTCGCATGGT 57.414 50.000 14.28 2.41 45.16 3.55
4413 12549 2.196749 GAGTATGTGACTCGCATGGTG 58.803 52.381 14.28 0.00 45.16 4.17
4414 12550 1.134699 AGTATGTGACTCGCATGGTGG 60.135 52.381 14.28 0.00 35.27 4.61
4415 12551 0.177836 TATGTGACTCGCATGGTGGG 59.822 55.000 14.28 0.00 35.27 4.61
4416 12552 1.552799 ATGTGACTCGCATGGTGGGA 61.553 55.000 4.21 0.00 36.96 4.37
4421 12557 3.321648 TCGCATGGTGGGAGCTGT 61.322 61.111 0.00 0.00 34.23 4.40
4422 12558 2.821366 CGCATGGTGGGAGCTGTC 60.821 66.667 0.00 0.00 31.21 3.51
4423 12559 2.352422 GCATGGTGGGAGCTGTCA 59.648 61.111 0.00 0.00 0.00 3.58
4424 12560 1.077212 GCATGGTGGGAGCTGTCAT 60.077 57.895 0.00 0.00 0.00 3.06
4425 12561 0.682209 GCATGGTGGGAGCTGTCATT 60.682 55.000 0.00 0.00 0.00 2.57
4426 12562 1.100510 CATGGTGGGAGCTGTCATTG 58.899 55.000 0.00 0.00 0.00 2.82
4427 12563 0.700564 ATGGTGGGAGCTGTCATTGT 59.299 50.000 0.00 0.00 0.00 2.71
4428 12564 1.357137 TGGTGGGAGCTGTCATTGTA 58.643 50.000 0.00 0.00 0.00 2.41
4429 12565 1.702401 TGGTGGGAGCTGTCATTGTAA 59.298 47.619 0.00 0.00 0.00 2.41
4430 12566 2.084546 GGTGGGAGCTGTCATTGTAAC 58.915 52.381 0.00 0.00 0.00 2.50
4431 12567 1.732259 GTGGGAGCTGTCATTGTAACG 59.268 52.381 0.00 0.00 0.00 3.18
4432 12568 1.346395 TGGGAGCTGTCATTGTAACGT 59.654 47.619 0.00 0.00 0.00 3.99
4433 12569 2.563620 TGGGAGCTGTCATTGTAACGTA 59.436 45.455 0.00 0.00 0.00 3.57
4434 12570 3.007074 TGGGAGCTGTCATTGTAACGTAA 59.993 43.478 0.00 0.00 0.00 3.18
4435 12571 3.998341 GGGAGCTGTCATTGTAACGTAAA 59.002 43.478 0.00 0.00 0.00 2.01
4436 12572 4.142966 GGGAGCTGTCATTGTAACGTAAAC 60.143 45.833 0.00 0.00 0.00 2.01
4437 12573 4.433805 GGAGCTGTCATTGTAACGTAAACG 60.434 45.833 0.00 0.04 46.33 3.60
4438 12574 4.300803 AGCTGTCATTGTAACGTAAACGA 58.699 39.130 9.86 0.00 43.02 3.85
4439 12575 4.746115 AGCTGTCATTGTAACGTAAACGAA 59.254 37.500 9.86 0.00 43.02 3.85
4440 12576 5.070862 GCTGTCATTGTAACGTAAACGAAG 58.929 41.667 9.86 0.00 43.02 3.79
4441 12577 5.107760 GCTGTCATTGTAACGTAAACGAAGA 60.108 40.000 9.86 0.00 43.02 2.87
4442 12578 6.442487 TGTCATTGTAACGTAAACGAAGAG 57.558 37.500 9.86 0.00 43.02 2.85
4443 12579 5.107760 TGTCATTGTAACGTAAACGAAGAGC 60.108 40.000 9.86 0.00 43.02 4.09
4444 12580 4.386652 TCATTGTAACGTAAACGAAGAGCC 59.613 41.667 9.86 0.00 43.02 4.70
4445 12581 3.367992 TGTAACGTAAACGAAGAGCCA 57.632 42.857 9.86 0.00 43.02 4.75
4446 12582 3.916761 TGTAACGTAAACGAAGAGCCAT 58.083 40.909 9.86 0.00 43.02 4.40
4447 12583 3.676172 TGTAACGTAAACGAAGAGCCATG 59.324 43.478 9.86 0.00 43.02 3.66
4448 12584 2.450609 ACGTAAACGAAGAGCCATGT 57.549 45.000 9.86 0.00 43.02 3.21
4449 12585 2.762745 ACGTAAACGAAGAGCCATGTT 58.237 42.857 9.86 0.00 43.02 2.71
4450 12586 2.735134 ACGTAAACGAAGAGCCATGTTC 59.265 45.455 9.86 0.00 43.02 3.18
4451 12587 2.734606 CGTAAACGAAGAGCCATGTTCA 59.265 45.455 0.00 0.00 43.02 3.18
4452 12588 3.181530 CGTAAACGAAGAGCCATGTTCAG 60.182 47.826 0.00 0.00 43.02 3.02
4453 12589 2.839486 AACGAAGAGCCATGTTCAGA 57.161 45.000 0.00 0.00 0.00 3.27
4454 12590 2.086054 ACGAAGAGCCATGTTCAGAC 57.914 50.000 0.00 0.00 0.00 3.51
4455 12591 0.994995 CGAAGAGCCATGTTCAGACG 59.005 55.000 0.00 0.00 0.00 4.18
4456 12592 1.402852 CGAAGAGCCATGTTCAGACGA 60.403 52.381 0.00 0.00 0.00 4.20
4457 12593 2.266554 GAAGAGCCATGTTCAGACGAG 58.733 52.381 0.00 0.00 0.00 4.18
4458 12594 0.534412 AGAGCCATGTTCAGACGAGG 59.466 55.000 0.00 0.00 0.00 4.63
4459 12595 0.532573 GAGCCATGTTCAGACGAGGA 59.467 55.000 0.00 0.00 0.00 3.71
4460 12596 0.534412 AGCCATGTTCAGACGAGGAG 59.466 55.000 0.00 0.00 0.00 3.69
4461 12597 0.460987 GCCATGTTCAGACGAGGAGG 60.461 60.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.604780 CCGCATGATCTCCATCCCAC 60.605 60.000 0.00 0.00 31.94 4.61
4 5 1.673665 GGCCGCATGATCTCCATCC 60.674 63.158 0.00 0.00 31.94 3.51
5 6 0.610174 TAGGCCGCATGATCTCCATC 59.390 55.000 0.00 0.00 31.94 3.51
6 7 0.612229 CTAGGCCGCATGATCTCCAT 59.388 55.000 0.00 0.00 35.44 3.41
7 8 1.475169 CCTAGGCCGCATGATCTCCA 61.475 60.000 0.00 0.00 0.00 3.86
8 9 1.294780 CCTAGGCCGCATGATCTCC 59.705 63.158 0.00 0.00 0.00 3.71
9 10 1.294780 CCCTAGGCCGCATGATCTC 59.705 63.158 2.05 0.00 0.00 2.75
10 11 2.219875 CCCCTAGGCCGCATGATCT 61.220 63.158 2.05 0.00 0.00 2.75
21 22 3.432051 CTCAGCGAACGCCCCTAGG 62.432 68.421 15.44 0.06 43.17 3.02
23 24 3.458163 CCTCAGCGAACGCCCCTA 61.458 66.667 15.44 0.00 43.17 3.53
26 27 3.423154 CAACCTCAGCGAACGCCC 61.423 66.667 15.44 0.00 43.17 6.13
27 28 3.423154 CCAACCTCAGCGAACGCC 61.423 66.667 15.44 0.00 43.17 5.68
28 29 4.090057 GCCAACCTCAGCGAACGC 62.090 66.667 11.31 11.31 42.33 4.84
29 30 3.423154 GGCCAACCTCAGCGAACG 61.423 66.667 0.00 0.00 0.00 3.95
30 31 2.032681 AGGCCAACCTCAGCGAAC 59.967 61.111 5.01 0.00 46.34 3.95
41 42 4.697756 CGTTCCCTGCGAGGCCAA 62.698 66.667 5.01 0.00 32.73 4.52
48 49 2.355363 TCGTTGACGTTCCCTGCG 60.355 61.111 3.25 0.00 40.80 5.18
50 51 2.933495 TATCTCGTTGACGTTCCCTG 57.067 50.000 3.25 0.00 40.80 4.45
73 74 9.468532 AGCTATTGACAAAGTTTTTGAGAAATC 57.531 29.630 8.41 0.00 0.00 2.17
76 77 7.701924 CACAGCTATTGACAAAGTTTTTGAGAA 59.298 33.333 8.41 1.71 0.00 2.87
77 78 7.148086 ACACAGCTATTGACAAAGTTTTTGAGA 60.148 33.333 8.41 0.00 0.00 3.27
80 81 8.693504 CATACACAGCTATTGACAAAGTTTTTG 58.306 33.333 1.55 0.28 0.00 2.44
81 82 7.382218 GCATACACAGCTATTGACAAAGTTTTT 59.618 33.333 1.55 0.00 0.00 1.94
82 83 6.863126 GCATACACAGCTATTGACAAAGTTTT 59.137 34.615 1.55 0.00 0.00 2.43
204 4423 0.179094 ATCGGACGCGATTTGGCTTA 60.179 50.000 15.93 0.00 0.00 3.09
205 4424 1.449601 ATCGGACGCGATTTGGCTT 60.450 52.632 15.93 0.00 0.00 4.35
223 4474 0.597568 CCCGCAAAATCTGTTCAGCA 59.402 50.000 0.00 0.00 0.00 4.41
272 4530 4.798682 CCGGGGCAGGGGAGTAGT 62.799 72.222 0.00 0.00 0.00 2.73
351 4632 2.052104 GTGCATTGGGGCAGGTACC 61.052 63.158 2.73 2.73 45.96 3.34
353 4634 2.358619 GGTGCATTGGGGCAGGTA 59.641 61.111 0.00 0.00 45.96 3.08
387 4693 1.649664 CAGAGGCCATGAAAGAGACG 58.350 55.000 5.01 0.00 0.00 4.18
437 4743 0.032952 AGGCTCGTAAACTTGTCGCA 59.967 50.000 0.00 0.00 0.00 5.10
443 4749 1.275573 GACTGGGAGGCTCGTAAACTT 59.724 52.381 8.69 0.00 0.00 2.66
507 4855 4.099573 GGTCTCGATCCAGATCCAAAACTA 59.900 45.833 2.11 0.00 34.40 2.24
508 4856 3.118592 GGTCTCGATCCAGATCCAAAACT 60.119 47.826 2.11 0.00 34.40 2.66
526 4874 6.365520 AGACACAGAACCTTAATTTTGGTCT 58.634 36.000 3.06 0.00 35.17 3.85
586 4934 5.407084 CGGTTTTGAATTATTTTTCGGGCTT 59.593 36.000 0.00 0.00 0.00 4.35
588 4936 4.924462 TCGGTTTTGAATTATTTTTCGGGC 59.076 37.500 0.00 0.00 0.00 6.13
596 4944 6.070824 AGGGCTGAAATCGGTTTTGAATTATT 60.071 34.615 0.00 0.00 0.00 1.40
639 4992 4.327680 GGTCAGCCAGAAGTATTGAAACT 58.672 43.478 0.00 0.00 34.09 2.66
652 5005 2.672961 TAACATCTTCGGTCAGCCAG 57.327 50.000 0.00 0.00 34.09 4.85
653 5006 2.766263 AGATAACATCTTCGGTCAGCCA 59.234 45.455 0.00 0.00 35.76 4.75
656 5009 6.980978 ACATACAAGATAACATCTTCGGTCAG 59.019 38.462 0.00 0.00 46.17 3.51
658 5011 6.757010 ACACATACAAGATAACATCTTCGGTC 59.243 38.462 0.00 0.00 46.17 4.79
660 5013 6.074835 CGACACATACAAGATAACATCTTCGG 60.075 42.308 0.00 0.00 46.17 4.30
661 5014 6.074835 CCGACACATACAAGATAACATCTTCG 60.075 42.308 0.00 0.00 46.17 3.79
662 5015 6.978659 TCCGACACATACAAGATAACATCTTC 59.021 38.462 0.00 0.00 46.17 2.87
665 5018 6.346919 GCATCCGACACATACAAGATAACATC 60.347 42.308 0.00 0.00 0.00 3.06
666 5019 5.466728 GCATCCGACACATACAAGATAACAT 59.533 40.000 0.00 0.00 0.00 2.71
667 5020 4.808895 GCATCCGACACATACAAGATAACA 59.191 41.667 0.00 0.00 0.00 2.41
668 5021 5.050490 AGCATCCGACACATACAAGATAAC 58.950 41.667 0.00 0.00 0.00 1.89
676 6293 2.293677 TGTCAGCATCCGACACATAC 57.706 50.000 0.00 0.00 38.45 2.39
678 6295 2.011947 CAATGTCAGCATCCGACACAT 58.988 47.619 0.00 0.00 45.64 3.21
696 6313 3.254657 CACCAAATTAGAACGAAGGCCAA 59.745 43.478 5.01 0.00 0.00 4.52
697 6314 2.817258 CACCAAATTAGAACGAAGGCCA 59.183 45.455 5.01 0.00 0.00 5.36
715 6335 5.778862 TCGGAAATCAAAAAGGAAATCACC 58.221 37.500 0.00 0.00 0.00 4.02
726 6350 2.630098 TGGCCATGTTCGGAAATCAAAA 59.370 40.909 0.00 0.00 0.00 2.44
729 6353 1.462616 CTGGCCATGTTCGGAAATCA 58.537 50.000 5.51 0.00 0.00 2.57
736 6360 3.047718 CTGCTGCTGGCCATGTTCG 62.048 63.158 5.51 0.00 40.92 3.95
750 6374 1.336240 GCTTTTTGATTCACCGCTGCT 60.336 47.619 0.00 0.00 0.00 4.24
756 6380 5.138125 TCCTCATTGCTTTTTGATTCACC 57.862 39.130 0.00 0.00 0.00 4.02
758 6382 7.094631 CAGAATCCTCATTGCTTTTTGATTCA 58.905 34.615 10.77 0.00 39.19 2.57
761 6385 5.482878 ACCAGAATCCTCATTGCTTTTTGAT 59.517 36.000 0.00 0.00 0.00 2.57
762 6386 4.834496 ACCAGAATCCTCATTGCTTTTTGA 59.166 37.500 0.00 0.00 0.00 2.69
763 6387 5.143376 ACCAGAATCCTCATTGCTTTTTG 57.857 39.130 0.00 0.00 0.00 2.44
764 6388 6.916360 TTACCAGAATCCTCATTGCTTTTT 57.084 33.333 0.00 0.00 0.00 1.94
765 6389 6.494835 AGTTTACCAGAATCCTCATTGCTTTT 59.505 34.615 0.00 0.00 0.00 2.27
768 6392 5.184892 AGTTTACCAGAATCCTCATTGCT 57.815 39.130 0.00 0.00 0.00 3.91
769 6393 6.116126 AGTAGTTTACCAGAATCCTCATTGC 58.884 40.000 0.00 0.00 0.00 3.56
770 6394 7.331026 TGAGTAGTTTACCAGAATCCTCATTG 58.669 38.462 0.00 0.00 0.00 2.82
771 6395 7.496346 TGAGTAGTTTACCAGAATCCTCATT 57.504 36.000 0.00 0.00 0.00 2.57
773 6397 6.897966 AGATGAGTAGTTTACCAGAATCCTCA 59.102 38.462 0.00 0.00 0.00 3.86
775 6399 7.129425 AGAGATGAGTAGTTTACCAGAATCCT 58.871 38.462 0.00 0.00 0.00 3.24
776 6400 7.354751 AGAGATGAGTAGTTTACCAGAATCC 57.645 40.000 0.00 0.00 0.00 3.01
780 6404 6.127591 GCAGAAGAGATGAGTAGTTTACCAGA 60.128 42.308 0.00 0.00 0.00 3.86
781 6405 6.039616 GCAGAAGAGATGAGTAGTTTACCAG 58.960 44.000 0.00 0.00 0.00 4.00
783 6407 5.105310 TGGCAGAAGAGATGAGTAGTTTACC 60.105 44.000 0.00 0.00 0.00 2.85
784 6408 5.967088 TGGCAGAAGAGATGAGTAGTTTAC 58.033 41.667 0.00 0.00 0.00 2.01
786 6410 5.221722 TGTTGGCAGAAGAGATGAGTAGTTT 60.222 40.000 0.00 0.00 0.00 2.66
787 6411 4.284490 TGTTGGCAGAAGAGATGAGTAGTT 59.716 41.667 0.00 0.00 0.00 2.24
788 6412 3.834813 TGTTGGCAGAAGAGATGAGTAGT 59.165 43.478 0.00 0.00 0.00 2.73
791 6430 3.672808 CTTGTTGGCAGAAGAGATGAGT 58.327 45.455 2.94 0.00 0.00 3.41
798 6437 1.141657 AGAGTGCTTGTTGGCAGAAGA 59.858 47.619 11.38 0.00 43.25 2.87
823 6462 0.319813 GTTGTTCATGCCTTGGGTGC 60.320 55.000 0.00 0.00 0.00 5.01
867 6509 2.226437 CGCCATAACAAGCAGTGAACTT 59.774 45.455 0.00 0.00 0.00 2.66
874 6516 1.453155 AACCTCGCCATAACAAGCAG 58.547 50.000 0.00 0.00 0.00 4.24
924 6593 1.348064 TGTTCTTCCCCGTCACTGAT 58.652 50.000 0.00 0.00 0.00 2.90
935 6604 3.339141 GTCCAACCTCTCATGTTCTTCC 58.661 50.000 0.00 0.00 0.00 3.46
942 6611 0.036952 AGTGCGTCCAACCTCTCATG 60.037 55.000 0.00 0.00 0.00 3.07
991 6661 6.546428 TCTTCGGAAATTCATCTAGAAGGT 57.454 37.500 0.00 0.00 40.15 3.50
994 6664 5.977635 TGCTCTTCGGAAATTCATCTAGAA 58.022 37.500 0.00 0.00 41.28 2.10
1003 6673 1.168714 GTGCCTGCTCTTCGGAAATT 58.831 50.000 0.00 0.00 0.00 1.82
1085 6758 4.647399 AGAGGTATCAAGCACTTACTCTCC 59.353 45.833 0.00 0.00 0.00 3.71
1123 6796 9.797556 GACCCCATATACTTGAAAAATGTTTAC 57.202 33.333 0.00 0.00 0.00 2.01
1169 6851 9.801714 GTAAAACGAAATTAAACTCGAGATTCA 57.198 29.630 21.68 5.49 38.43 2.57
1188 6870 9.977762 ACTAGTGAAAGTAAACAAAGTAAAACG 57.022 29.630 0.00 0.00 0.00 3.60
1232 6914 6.785337 TGACGAGATTTCCTTCTTATGGTA 57.215 37.500 0.00 0.00 0.00 3.25
1237 6920 5.012768 ACCCTTTGACGAGATTTCCTTCTTA 59.987 40.000 0.00 0.00 0.00 2.10
1238 6921 4.202472 ACCCTTTGACGAGATTTCCTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
1240 6923 3.676093 ACCCTTTGACGAGATTTCCTTC 58.324 45.455 0.00 0.00 0.00 3.46
1301 7051 5.665381 ACGGTTAGCTATCTCTTACGTAC 57.335 43.478 0.00 0.00 0.00 3.67
1302 7052 5.586243 ACAACGGTTAGCTATCTCTTACGTA 59.414 40.000 0.00 0.00 0.00 3.57
1303 7053 4.397417 ACAACGGTTAGCTATCTCTTACGT 59.603 41.667 0.00 0.00 0.00 3.57
1304 7054 4.733887 CACAACGGTTAGCTATCTCTTACG 59.266 45.833 0.00 0.00 0.00 3.18
1308 7058 2.159085 GGCACAACGGTTAGCTATCTCT 60.159 50.000 14.50 0.00 0.00 3.10
1313 7063 3.681593 TTAAGGCACAACGGTTAGCTA 57.318 42.857 14.50 0.00 0.00 3.32
1336 7088 3.380004 CGTCTAAAGGCATGCCCAATTTA 59.620 43.478 33.14 26.30 36.58 1.40
1345 7099 5.411781 ACTAAGAGAACGTCTAAAGGCATG 58.588 41.667 0.00 0.00 32.65 4.06
1346 7100 5.185249 TGACTAAGAGAACGTCTAAAGGCAT 59.815 40.000 0.00 0.00 33.41 4.40
1361 7115 7.012138 CCAATGAATCACAGGAATGACTAAGAG 59.988 40.741 0.00 0.00 0.00 2.85
1373 7127 7.703621 GTGATACAATTTCCAATGAATCACAGG 59.296 37.037 7.13 0.00 35.00 4.00
1423 7187 8.948853 TTTTCAATGTAAAAGTATGAGAAGCG 57.051 30.769 0.00 0.00 0.00 4.68
1595 7391 9.627123 TCCTCTCTTAAGTTGATTTTTCTTTCA 57.373 29.630 1.63 0.00 0.00 2.69
1652 7448 2.063774 GGAAAAGGTCCCCTCGTGA 58.936 57.895 0.00 0.00 41.10 4.35
1662 7458 3.652869 TGATCACCTCAGAAGGAAAAGGT 59.347 43.478 0.00 0.00 46.67 3.50
1733 7726 5.941555 AACTCTTATAAGTCTGGTCCCTG 57.058 43.478 12.19 0.00 0.00 4.45
1734 7727 7.456902 TGTTAAACTCTTATAAGTCTGGTCCCT 59.543 37.037 12.19 1.10 0.00 4.20
1806 7829 2.119495 ACATGCCGACTAAGGATTCCT 58.881 47.619 0.00 0.00 33.87 3.36
1872 7908 9.914131 AAATAGCTTCATAAGGAAAACAAGTTC 57.086 29.630 0.00 0.00 34.44 3.01
1880 7916 6.038271 GCCTCGAAAATAGCTTCATAAGGAAA 59.962 38.462 0.00 0.00 34.44 3.13
1883 7919 4.816385 TGCCTCGAAAATAGCTTCATAAGG 59.184 41.667 0.00 0.00 0.00 2.69
1884 7920 5.991328 TGCCTCGAAAATAGCTTCATAAG 57.009 39.130 0.00 0.00 0.00 1.73
2004 8041 4.293494 TGGCCCATCCATAGCAATTTTAA 58.707 39.130 0.00 0.00 40.72 1.52
2030 8070 5.702670 GCAGTGCTATGTATCCATACAACAT 59.297 40.000 8.18 0.00 45.40 2.71
2031 8071 5.056480 GCAGTGCTATGTATCCATACAACA 58.944 41.667 8.18 1.04 45.40 3.33
2139 8225 8.840200 AAGTAGATGAACCTTAATAGTCTGGA 57.160 34.615 0.00 0.00 0.00 3.86
2145 8232 8.935741 AGGGGTTAAGTAGATGAACCTTAATAG 58.064 37.037 3.26 0.00 41.99 1.73
2150 8237 5.550403 TGAAGGGGTTAAGTAGATGAACCTT 59.450 40.000 0.00 0.00 41.99 3.50
2214 8309 7.715482 TGCACCTAGGGGAGATTTATATACTA 58.285 38.462 17.67 0.00 36.25 1.82
2216 8311 6.440965 ACTGCACCTAGGGGAGATTTATATAC 59.559 42.308 17.67 0.00 36.25 1.47
2220 8315 3.669949 ACTGCACCTAGGGGAGATTTAT 58.330 45.455 17.67 0.00 36.25 1.40
2255 8350 0.935898 CGCATGTGCAAAAAGCCAAA 59.064 45.000 5.77 0.00 44.83 3.28
2256 8351 1.497223 GCGCATGTGCAAAAAGCCAA 61.497 50.000 25.87 0.00 44.83 4.52
2257 8352 1.955157 GCGCATGTGCAAAAAGCCA 60.955 52.632 25.87 0.00 44.83 4.75
2258 8353 2.670210 GGCGCATGTGCAAAAAGCC 61.670 57.895 30.73 9.46 44.83 4.35
2259 8354 2.670210 GGGCGCATGTGCAAAAAGC 61.670 57.895 30.73 13.32 45.96 3.51
2260 8355 1.005867 AGGGCGCATGTGCAAAAAG 60.006 52.632 30.73 0.00 42.21 2.27
2261 8356 1.300775 CAGGGCGCATGTGCAAAAA 60.301 52.632 30.73 0.00 42.21 1.94
2262 8357 2.339348 CAGGGCGCATGTGCAAAA 59.661 55.556 30.73 0.00 42.21 2.44
2291 8386 1.405821 CGTTTAGGTGGTGGTTTTGCA 59.594 47.619 0.00 0.00 0.00 4.08
2303 8399 0.758123 TTCACCGGGTTCGTTTAGGT 59.242 50.000 6.32 0.00 35.24 3.08
2313 8409 1.192428 GTCTAGACCATTCACCGGGT 58.808 55.000 12.13 0.00 40.96 5.28
2317 8413 4.649674 TCCATACTGTCTAGACCATTCACC 59.350 45.833 20.11 0.00 0.00 4.02
2325 8421 7.142680 GCTGAAGTATTCCATACTGTCTAGAC 58.857 42.308 16.32 16.32 46.93 2.59
2327 8423 6.146216 CGCTGAAGTATTCCATACTGTCTAG 58.854 44.000 0.00 0.00 46.93 2.43
2393 8489 8.659925 TTTAGACGGTGTTGAATACTTGTAAA 57.340 30.769 0.00 0.00 0.00 2.01
2438 8535 7.699566 TGACACATGTGGAAAAACTAACTAAC 58.300 34.615 28.64 0.00 34.19 2.34
2439 8536 7.867305 TGACACATGTGGAAAAACTAACTAA 57.133 32.000 28.64 0.00 34.19 2.24
2443 8540 6.502652 CACATGACACATGTGGAAAAACTAA 58.497 36.000 28.64 0.16 44.04 2.24
2445 8542 4.935702 CACATGACACATGTGGAAAAACT 58.064 39.130 28.64 6.69 44.04 2.66
2461 8558 1.558233 TGCCAATGCATTCCACATGA 58.442 45.000 9.53 0.00 44.23 3.07
2485 8582 2.308866 CACTGGGGTGATTTAGGAGGTT 59.691 50.000 0.00 0.00 45.61 3.50
2524 8621 2.249309 ACCTGACCCCGAAGTATTCT 57.751 50.000 0.00 0.00 44.75 2.40
2552 8651 1.671845 AGCGTCGAGGCTAGTCTTTAG 59.328 52.381 29.69 0.00 42.62 1.85
2555 8654 0.393267 AGAGCGTCGAGGCTAGTCTT 60.393 55.000 30.62 9.80 44.93 3.01
2644 8850 7.116090 GTCTCATCTGTTCTATGCATGTGATAC 59.884 40.741 10.16 8.97 0.00 2.24
2670 8876 3.490155 ACGTGATCATCGAGAGTACGTAG 59.510 47.826 19.74 0.00 45.10 3.51
2683 8896 0.536724 TGGCTGTAGCACGTGATCAT 59.463 50.000 22.23 3.88 44.36 2.45
2684 8897 0.389817 GTGGCTGTAGCACGTGATCA 60.390 55.000 22.23 12.42 44.36 2.92
2685 8898 0.108615 AGTGGCTGTAGCACGTGATC 60.109 55.000 22.23 8.03 44.36 2.92
2699 8915 5.252969 TGATGCAAAAGATATGAAGTGGC 57.747 39.130 0.00 0.00 0.00 5.01
2709 8925 7.172019 GGAAACATCTTTGTTGATGCAAAAGAT 59.828 33.333 14.70 14.70 45.30 2.40
2799 9037 9.816787 TTCCCTTAGGATGTTTTACTTGTAATT 57.183 29.630 0.00 0.00 43.54 1.40
2800 9038 9.462606 CTTCCCTTAGGATGTTTTACTTGTAAT 57.537 33.333 0.00 0.00 43.54 1.89
2817 9063 8.622948 AGAAACATCTTAAACACTTCCCTTAG 57.377 34.615 0.00 0.00 0.00 2.18
2869 9120 8.807118 TGAGAGAGCCCTACATAGTTATTATTG 58.193 37.037 0.00 0.00 0.00 1.90
2880 9141 2.363680 CGTTGATGAGAGAGCCCTACAT 59.636 50.000 0.00 0.00 0.00 2.29
2901 9162 4.329545 TCGCTTGAGGCCACCCAC 62.330 66.667 5.01 0.00 37.74 4.61
2911 9172 4.640201 CCAGAAAATTAATCCCTCGCTTGA 59.360 41.667 0.00 0.00 0.00 3.02
3074 9335 2.226437 CACACTACAGTTGCCACAATCC 59.774 50.000 0.00 0.00 0.00 3.01
3084 9345 9.944376 AGTTATATCAATGAACACACTACAGTT 57.056 29.630 0.00 0.00 0.00 3.16
3085 9346 9.944376 AAGTTATATCAATGAACACACTACAGT 57.056 29.630 0.00 0.00 0.00 3.55
3225 9486 2.514824 GGCACCATCGAAGAGCCC 60.515 66.667 13.95 0.00 43.63 5.19
3276 9537 4.334759 CCAAGAATCTATCACCACAGCAAG 59.665 45.833 0.00 0.00 0.00 4.01
3379 9640 4.634883 TCTTAATCGTTCGAGCACTAGACT 59.365 41.667 0.00 0.00 0.00 3.24
3437 9698 2.117156 CCCATCAGGCAAAGGCGAG 61.117 63.158 0.00 0.00 42.47 5.03
3525 9789 2.230508 ACGACTCGACTGCCTATTTGAA 59.769 45.455 5.20 0.00 0.00 2.69
3618 11603 2.093764 GTGGAGCATGCAGAGAGTAACT 60.094 50.000 21.98 0.00 36.81 2.24
3720 11739 6.183347 CCAGGACATCAAAGACCTCTTTTAT 58.817 40.000 0.00 0.00 43.07 1.40
3726 11746 1.280421 AGCCAGGACATCAAAGACCTC 59.720 52.381 0.00 0.00 31.25 3.85
3732 11753 4.365514 TTTACTCAGCCAGGACATCAAA 57.634 40.909 0.00 0.00 0.00 2.69
3757 11778 2.353958 CACCAGGCATGCCAGTCT 59.646 61.111 37.18 15.37 38.92 3.24
3785 11810 6.327365 TCATCACCTTCCTCAGCTGAAATATA 59.673 38.462 18.85 0.95 0.00 0.86
3786 11811 5.131642 TCATCACCTTCCTCAGCTGAAATAT 59.868 40.000 18.85 0.00 0.00 1.28
3787 11812 4.471025 TCATCACCTTCCTCAGCTGAAATA 59.529 41.667 18.85 2.92 0.00 1.40
3807 11834 3.548745 TGTAGCTTGCTGCAGTATCAT 57.451 42.857 16.64 2.05 45.94 2.45
3816 11843 3.403038 ACTTACCTGTTGTAGCTTGCTG 58.597 45.455 5.26 0.00 0.00 4.41
3818 11845 4.147219 CAACTTACCTGTTGTAGCTTGC 57.853 45.455 0.00 0.00 41.50 4.01
3854 11881 6.100424 AGGGGAAAGAATAATAGTCACCTCAG 59.900 42.308 0.00 0.00 37.59 3.35
3894 11921 6.850752 TGTCATCACCATCTCTACTTGTAA 57.149 37.500 0.00 0.00 0.00 2.41
3933 11969 4.065088 CAACAAAGTGCTAGCTAGTGGAA 58.935 43.478 21.62 3.33 0.00 3.53
3978 12111 3.195002 GGCGCTGCTTATCGTGCA 61.195 61.111 7.64 0.00 38.34 4.57
4056 12191 5.468540 AATCAAAGGCCCTTTAACAAGAC 57.531 39.130 8.75 0.00 31.96 3.01
4105 12240 6.372659 TCTTCAACGTACGGTATACTCTTCTT 59.627 38.462 21.06 0.00 0.00 2.52
4106 12241 5.877012 TCTTCAACGTACGGTATACTCTTCT 59.123 40.000 21.06 0.00 0.00 2.85
4107 12242 6.111768 TCTTCAACGTACGGTATACTCTTC 57.888 41.667 21.06 0.00 0.00 2.87
4108 12243 6.372659 TCTTCTTCAACGTACGGTATACTCTT 59.627 38.462 21.06 0.00 0.00 2.85
4109 12244 5.877012 TCTTCTTCAACGTACGGTATACTCT 59.123 40.000 21.06 0.00 0.00 3.24
4110 12245 6.111768 TCTTCTTCAACGTACGGTATACTC 57.888 41.667 21.06 0.00 0.00 2.59
4111 12246 5.645497 ACTCTTCTTCAACGTACGGTATACT 59.355 40.000 21.06 0.00 0.00 2.12
4112 12247 5.873732 ACTCTTCTTCAACGTACGGTATAC 58.126 41.667 21.06 0.00 0.00 1.47
4113 12248 7.792374 ATACTCTTCTTCAACGTACGGTATA 57.208 36.000 21.06 1.26 0.00 1.47
4114 12249 6.690194 ATACTCTTCTTCAACGTACGGTAT 57.310 37.500 21.06 9.99 0.00 2.73
4115 12250 7.609760 TTATACTCTTCTTCAACGTACGGTA 57.390 36.000 21.06 8.07 0.00 4.02
4116 12251 6.500684 TTATACTCTTCTTCAACGTACGGT 57.499 37.500 21.06 11.03 0.00 4.83
4117 12252 7.025963 ACTTTATACTCTTCTTCAACGTACGG 58.974 38.462 21.06 2.32 0.00 4.02
4118 12253 9.713740 ATACTTTATACTCTTCTTCAACGTACG 57.286 33.333 15.01 15.01 0.00 3.67
4137 12272 2.898612 TGACGACCCACACCATACTTTA 59.101 45.455 0.00 0.00 0.00 1.85
4152 12288 6.038382 TCAGAGTGATATCCTAGTTTGACGAC 59.962 42.308 0.00 0.00 0.00 4.34
4183 12319 5.474578 TCACATAGGCATGGTTAGATCTC 57.525 43.478 0.00 0.00 36.39 2.75
4184 12320 5.784390 AGATCACATAGGCATGGTTAGATCT 59.216 40.000 0.00 0.00 36.68 2.75
4185 12321 6.047511 AGATCACATAGGCATGGTTAGATC 57.952 41.667 0.00 0.00 36.39 2.75
4186 12322 6.728164 AGTAGATCACATAGGCATGGTTAGAT 59.272 38.462 0.00 0.00 36.39 1.98
4187 12323 6.077993 AGTAGATCACATAGGCATGGTTAGA 58.922 40.000 0.00 0.00 36.39 2.10
4188 12324 6.352016 AGTAGATCACATAGGCATGGTTAG 57.648 41.667 0.00 0.00 36.39 2.34
4189 12325 5.246203 GGAGTAGATCACATAGGCATGGTTA 59.754 44.000 0.00 0.00 36.39 2.85
4190 12326 4.040952 GGAGTAGATCACATAGGCATGGTT 59.959 45.833 0.00 0.00 36.39 3.67
4191 12327 3.580458 GGAGTAGATCACATAGGCATGGT 59.420 47.826 0.00 0.00 36.39 3.55
4192 12328 3.055530 GGGAGTAGATCACATAGGCATGG 60.056 52.174 0.00 0.00 36.39 3.66
4193 12329 3.837146 AGGGAGTAGATCACATAGGCATG 59.163 47.826 0.00 0.00 38.21 4.06
4194 12330 4.093011 GAGGGAGTAGATCACATAGGCAT 58.907 47.826 0.00 0.00 31.63 4.40
4195 12331 3.501349 GAGGGAGTAGATCACATAGGCA 58.499 50.000 0.00 0.00 31.63 4.75
4196 12332 2.829120 GGAGGGAGTAGATCACATAGGC 59.171 54.545 0.00 0.00 31.63 3.93
4197 12333 3.085533 CGGAGGGAGTAGATCACATAGG 58.914 54.545 0.00 0.00 31.63 2.57
4198 12334 3.757270 ACGGAGGGAGTAGATCACATAG 58.243 50.000 0.00 0.00 31.63 2.23
4199 12335 3.878237 ACGGAGGGAGTAGATCACATA 57.122 47.619 0.00 0.00 31.63 2.29
4200 12336 2.757894 ACGGAGGGAGTAGATCACAT 57.242 50.000 0.00 0.00 31.63 3.21
4201 12337 2.376109 GAACGGAGGGAGTAGATCACA 58.624 52.381 0.00 0.00 31.63 3.58
4202 12338 1.682323 GGAACGGAGGGAGTAGATCAC 59.318 57.143 0.00 0.00 0.00 3.06
4203 12339 1.569548 AGGAACGGAGGGAGTAGATCA 59.430 52.381 0.00 0.00 0.00 2.92
4204 12340 2.368311 AGGAACGGAGGGAGTAGATC 57.632 55.000 0.00 0.00 0.00 2.75
4205 12341 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
4206 12342 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
4207 12343 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
4208 12344 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4209 12345 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4210 12346 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4211 12347 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4212 12348 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4213 12349 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4228 12364 9.893305 CCGTTTGAAATGTCTAAAAAGACTTAT 57.107 29.630 7.04 0.00 39.41 1.73
4229 12365 9.111613 TCCGTTTGAAATGTCTAAAAAGACTTA 57.888 29.630 7.04 0.00 39.41 2.24
4230 12366 7.992008 TCCGTTTGAAATGTCTAAAAAGACTT 58.008 30.769 7.04 0.00 39.41 3.01
4231 12367 7.562454 TCCGTTTGAAATGTCTAAAAAGACT 57.438 32.000 7.04 0.00 39.41 3.24
4232 12368 8.797266 ATTCCGTTTGAAATGTCTAAAAAGAC 57.203 30.769 0.00 0.00 36.33 3.01
4233 12369 9.887406 GTATTCCGTTTGAAATGTCTAAAAAGA 57.113 29.630 0.00 0.00 36.33 2.52
4234 12370 9.672086 TGTATTCCGTTTGAAATGTCTAAAAAG 57.328 29.630 0.00 0.00 36.33 2.27
4236 12372 9.453325 GTTGTATTCCGTTTGAAATGTCTAAAA 57.547 29.630 0.00 0.00 36.33 1.52
4237 12373 8.622157 TGTTGTATTCCGTTTGAAATGTCTAAA 58.378 29.630 0.00 0.00 36.33 1.85
4238 12374 8.155821 TGTTGTATTCCGTTTGAAATGTCTAA 57.844 30.769 0.00 0.00 36.33 2.10
4239 12375 7.731882 TGTTGTATTCCGTTTGAAATGTCTA 57.268 32.000 0.00 0.00 36.33 2.59
4240 12376 6.627395 TGTTGTATTCCGTTTGAAATGTCT 57.373 33.333 0.00 0.00 36.33 3.41
4241 12377 9.009327 CATATGTTGTATTCCGTTTGAAATGTC 57.991 33.333 0.00 0.00 36.33 3.06
4242 12378 7.973388 CCATATGTTGTATTCCGTTTGAAATGT 59.027 33.333 1.24 0.00 36.33 2.71
4243 12379 8.187480 TCCATATGTTGTATTCCGTTTGAAATG 58.813 33.333 1.24 0.00 36.33 2.32
4244 12380 8.287439 TCCATATGTTGTATTCCGTTTGAAAT 57.713 30.769 1.24 0.00 36.33 2.17
4245 12381 7.689446 TCCATATGTTGTATTCCGTTTGAAA 57.311 32.000 1.24 0.00 36.33 2.69
4246 12382 7.338196 ACATCCATATGTTGTATTCCGTTTGAA 59.662 33.333 1.24 0.00 44.07 2.69
4247 12383 6.826231 ACATCCATATGTTGTATTCCGTTTGA 59.174 34.615 1.24 0.00 44.07 2.69
4248 12384 7.026631 ACATCCATATGTTGTATTCCGTTTG 57.973 36.000 1.24 0.00 44.07 2.93
4249 12385 8.783093 CATACATCCATATGTTGTATTCCGTTT 58.217 33.333 18.77 3.18 44.07 3.60
4250 12386 7.936847 ACATACATCCATATGTTGTATTCCGTT 59.063 33.333 18.77 3.69 44.07 4.44
4251 12387 7.450074 ACATACATCCATATGTTGTATTCCGT 58.550 34.615 18.77 13.80 44.07 4.69
4252 12388 7.905604 ACATACATCCATATGTTGTATTCCG 57.094 36.000 18.77 13.38 44.07 4.30
4291 12427 8.723942 ACAGGATAAAATGAGTGAATCTACAC 57.276 34.615 0.00 0.00 40.60 2.90
4303 12439 9.778741 GGAGTGATTACATACAGGATAAAATGA 57.221 33.333 0.00 0.00 0.00 2.57
4304 12440 8.712363 CGGAGTGATTACATACAGGATAAAATG 58.288 37.037 0.00 0.00 0.00 2.32
4305 12441 8.647796 TCGGAGTGATTACATACAGGATAAAAT 58.352 33.333 0.00 0.00 0.00 1.82
4306 12442 8.014070 TCGGAGTGATTACATACAGGATAAAA 57.986 34.615 0.00 0.00 0.00 1.52
4307 12443 7.504574 TCTCGGAGTGATTACATACAGGATAAA 59.495 37.037 4.69 0.00 0.00 1.40
4308 12444 7.002276 TCTCGGAGTGATTACATACAGGATAA 58.998 38.462 4.69 0.00 0.00 1.75
4309 12445 6.540083 TCTCGGAGTGATTACATACAGGATA 58.460 40.000 4.69 0.00 0.00 2.59
4310 12446 5.386060 TCTCGGAGTGATTACATACAGGAT 58.614 41.667 4.69 0.00 0.00 3.24
4311 12447 4.788679 TCTCGGAGTGATTACATACAGGA 58.211 43.478 4.69 0.00 0.00 3.86
4312 12448 4.557695 GCTCTCGGAGTGATTACATACAGG 60.558 50.000 11.04 0.00 31.39 4.00
4313 12449 4.277174 AGCTCTCGGAGTGATTACATACAG 59.723 45.833 11.04 0.00 31.39 2.74
4314 12450 4.207955 AGCTCTCGGAGTGATTACATACA 58.792 43.478 11.04 0.00 31.39 2.29
4315 12451 4.517453 AGAGCTCTCGGAGTGATTACATAC 59.483 45.833 11.45 0.00 34.09 2.39
4316 12452 4.720046 AGAGCTCTCGGAGTGATTACATA 58.280 43.478 11.45 0.00 34.09 2.29
4317 12453 3.561143 AGAGCTCTCGGAGTGATTACAT 58.439 45.455 11.45 0.00 34.09 2.29
4318 12454 3.006112 AGAGCTCTCGGAGTGATTACA 57.994 47.619 11.45 0.00 34.09 2.41
4319 12455 5.502153 TTTAGAGCTCTCGGAGTGATTAC 57.498 43.478 22.17 0.00 34.09 1.89
4320 12456 5.241949 GGATTTAGAGCTCTCGGAGTGATTA 59.758 44.000 22.17 0.00 34.09 1.75
4321 12457 4.038642 GGATTTAGAGCTCTCGGAGTGATT 59.961 45.833 22.17 0.00 34.09 2.57
4322 12458 3.572255 GGATTTAGAGCTCTCGGAGTGAT 59.428 47.826 22.17 4.33 34.09 3.06
4323 12459 2.952978 GGATTTAGAGCTCTCGGAGTGA 59.047 50.000 22.17 0.00 34.09 3.41
4324 12460 2.955660 AGGATTTAGAGCTCTCGGAGTG 59.044 50.000 22.17 3.67 34.09 3.51
4325 12461 3.219281 GAGGATTTAGAGCTCTCGGAGT 58.781 50.000 22.17 4.40 34.09 3.85
4326 12462 2.225491 CGAGGATTTAGAGCTCTCGGAG 59.775 54.545 22.17 0.00 42.22 4.63
4327 12463 2.222886 CGAGGATTTAGAGCTCTCGGA 58.777 52.381 22.17 7.83 42.22 4.55
4328 12464 2.697431 CGAGGATTTAGAGCTCTCGG 57.303 55.000 22.17 0.00 42.22 4.63
4330 12466 2.295070 GGGACGAGGATTTAGAGCTCTC 59.705 54.545 22.17 5.75 0.00 3.20
4331 12467 2.091555 AGGGACGAGGATTTAGAGCTCT 60.092 50.000 22.17 22.17 0.00 4.09
4332 12468 2.312390 AGGGACGAGGATTTAGAGCTC 58.688 52.381 5.27 5.27 0.00 4.09
4333 12469 2.432510 CAAGGGACGAGGATTTAGAGCT 59.567 50.000 0.00 0.00 0.00 4.09
4334 12470 2.483889 CCAAGGGACGAGGATTTAGAGC 60.484 54.545 0.00 0.00 0.00 4.09
4335 12471 2.766828 ACCAAGGGACGAGGATTTAGAG 59.233 50.000 0.00 0.00 0.00 2.43
4336 12472 2.500098 CACCAAGGGACGAGGATTTAGA 59.500 50.000 0.00 0.00 0.00 2.10
4337 12473 2.420129 CCACCAAGGGACGAGGATTTAG 60.420 54.545 0.00 0.00 0.00 1.85
4338 12474 1.557832 CCACCAAGGGACGAGGATTTA 59.442 52.381 0.00 0.00 0.00 1.40
4339 12475 0.328258 CCACCAAGGGACGAGGATTT 59.672 55.000 0.00 0.00 0.00 2.17
4340 12476 0.546747 TCCACCAAGGGACGAGGATT 60.547 55.000 0.00 0.00 38.24 3.01
4341 12477 0.546747 TTCCACCAAGGGACGAGGAT 60.547 55.000 0.00 0.00 36.46 3.24
4342 12478 0.546747 ATTCCACCAAGGGACGAGGA 60.547 55.000 0.00 0.00 36.46 3.71
4343 12479 0.107654 GATTCCACCAAGGGACGAGG 60.108 60.000 0.00 0.00 36.46 4.63
4344 12480 0.905357 AGATTCCACCAAGGGACGAG 59.095 55.000 0.00 0.00 36.46 4.18
4345 12481 0.902531 GAGATTCCACCAAGGGACGA 59.097 55.000 0.00 0.00 36.46 4.20
4346 12482 0.905357 AGAGATTCCACCAAGGGACG 59.095 55.000 0.00 0.00 36.46 4.79
4347 12483 3.375699 TCTAGAGATTCCACCAAGGGAC 58.624 50.000 0.00 0.00 36.46 4.46
4348 12484 3.776731 TCTAGAGATTCCACCAAGGGA 57.223 47.619 0.00 0.00 38.24 4.20
4349 12485 4.471386 TCTTTCTAGAGATTCCACCAAGGG 59.529 45.833 0.00 0.00 38.24 3.95
4350 12486 5.188751 AGTCTTTCTAGAGATTCCACCAAGG 59.811 44.000 0.00 0.00 39.47 3.61
4351 12487 6.293004 AGTCTTTCTAGAGATTCCACCAAG 57.707 41.667 0.00 0.00 0.00 3.61
4352 12488 6.688073 AAGTCTTTCTAGAGATTCCACCAA 57.312 37.500 0.00 0.00 0.00 3.67
4353 12489 7.979786 ATAAGTCTTTCTAGAGATTCCACCA 57.020 36.000 0.00 0.00 0.00 4.17
4362 12498 9.250624 CGTTCCCAAATATAAGTCTTTCTAGAG 57.749 37.037 0.00 0.00 0.00 2.43
4363 12499 8.202137 CCGTTCCCAAATATAAGTCTTTCTAGA 58.798 37.037 0.00 0.00 0.00 2.43
4364 12500 8.202137 TCCGTTCCCAAATATAAGTCTTTCTAG 58.798 37.037 0.00 0.00 0.00 2.43
4365 12501 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
4366 12502 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
4367 12503 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
4368 12504 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
4369 12505 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
4370 12506 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
4371 12507 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
4372 12508 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
4373 12509 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
4374 12510 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
4375 12511 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
4376 12512 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
4377 12513 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4378 12514 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
4379 12515 1.557832 CATACTCCCTCCGTTCCCAAA 59.442 52.381 0.00 0.00 0.00 3.28
4380 12516 1.200519 CATACTCCCTCCGTTCCCAA 58.799 55.000 0.00 0.00 0.00 4.12
4381 12517 0.042131 ACATACTCCCTCCGTTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
4382 12518 0.464452 CACATACTCCCTCCGTTCCC 59.536 60.000 0.00 0.00 0.00 3.97
4383 12519 1.136500 GTCACATACTCCCTCCGTTCC 59.864 57.143 0.00 0.00 0.00 3.62
4384 12520 2.100989 AGTCACATACTCCCTCCGTTC 58.899 52.381 0.00 0.00 30.33 3.95
4385 12521 2.233305 AGTCACATACTCCCTCCGTT 57.767 50.000 0.00 0.00 30.33 4.44
4394 12530 1.134699 CCACCATGCGAGTCACATACT 60.135 52.381 0.00 0.00 42.80 2.12
4395 12531 1.290203 CCACCATGCGAGTCACATAC 58.710 55.000 0.00 0.00 0.00 2.39
4396 12532 0.177836 CCCACCATGCGAGTCACATA 59.822 55.000 0.00 0.00 0.00 2.29
4397 12533 1.078214 CCCACCATGCGAGTCACAT 60.078 57.895 0.00 0.00 0.00 3.21
4398 12534 2.171209 CTCCCACCATGCGAGTCACA 62.171 60.000 0.00 0.00 0.00 3.58
4399 12535 1.448540 CTCCCACCATGCGAGTCAC 60.449 63.158 0.00 0.00 0.00 3.67
4400 12536 2.981302 CTCCCACCATGCGAGTCA 59.019 61.111 0.00 0.00 0.00 3.41
4401 12537 2.512515 GCTCCCACCATGCGAGTC 60.513 66.667 0.00 0.00 0.00 3.36
4402 12538 3.005539 AGCTCCCACCATGCGAGT 61.006 61.111 0.00 0.00 0.00 4.18
4403 12539 2.513204 CAGCTCCCACCATGCGAG 60.513 66.667 0.00 0.00 0.00 5.03
4404 12540 3.315142 GACAGCTCCCACCATGCGA 62.315 63.158 0.00 0.00 0.00 5.10
4405 12541 2.821366 GACAGCTCCCACCATGCG 60.821 66.667 0.00 0.00 0.00 4.73
4406 12542 0.682209 AATGACAGCTCCCACCATGC 60.682 55.000 0.00 0.00 0.00 4.06
4407 12543 1.100510 CAATGACAGCTCCCACCATG 58.899 55.000 0.00 0.00 0.00 3.66
4408 12544 0.700564 ACAATGACAGCTCCCACCAT 59.299 50.000 0.00 0.00 0.00 3.55
4409 12545 1.357137 TACAATGACAGCTCCCACCA 58.643 50.000 0.00 0.00 0.00 4.17
4410 12546 2.084546 GTTACAATGACAGCTCCCACC 58.915 52.381 0.00 0.00 0.00 4.61
4411 12547 1.732259 CGTTACAATGACAGCTCCCAC 59.268 52.381 0.00 0.00 0.00 4.61
4412 12548 1.346395 ACGTTACAATGACAGCTCCCA 59.654 47.619 0.00 0.00 0.00 4.37
4413 12549 2.094762 ACGTTACAATGACAGCTCCC 57.905 50.000 0.00 0.00 0.00 4.30
4414 12550 4.433805 CGTTTACGTTACAATGACAGCTCC 60.434 45.833 0.00 0.00 34.11 4.70
4415 12551 4.383649 TCGTTTACGTTACAATGACAGCTC 59.616 41.667 0.00 0.00 40.80 4.09
4416 12552 4.300803 TCGTTTACGTTACAATGACAGCT 58.699 39.130 0.00 0.00 40.80 4.24
4417 12553 4.634349 TCGTTTACGTTACAATGACAGC 57.366 40.909 0.00 0.00 40.80 4.40
4418 12554 6.442487 TCTTCGTTTACGTTACAATGACAG 57.558 37.500 0.00 0.00 40.80 3.51
4419 12555 5.107760 GCTCTTCGTTTACGTTACAATGACA 60.108 40.000 0.00 0.00 40.80 3.58
4420 12556 5.303485 GCTCTTCGTTTACGTTACAATGAC 58.697 41.667 0.00 0.00 40.80 3.06
4421 12557 4.386652 GGCTCTTCGTTTACGTTACAATGA 59.613 41.667 0.00 0.00 40.80 2.57
4422 12558 4.150980 TGGCTCTTCGTTTACGTTACAATG 59.849 41.667 0.00 0.00 40.80 2.82
4423 12559 4.309099 TGGCTCTTCGTTTACGTTACAAT 58.691 39.130 0.00 0.00 40.80 2.71
4424 12560 3.715495 TGGCTCTTCGTTTACGTTACAA 58.285 40.909 0.00 0.00 40.80 2.41
4425 12561 3.367992 TGGCTCTTCGTTTACGTTACA 57.632 42.857 0.00 0.00 40.80 2.41
4426 12562 3.676646 ACATGGCTCTTCGTTTACGTTAC 59.323 43.478 0.00 0.00 40.80 2.50
4427 12563 3.916761 ACATGGCTCTTCGTTTACGTTA 58.083 40.909 0.00 0.00 40.80 3.18
4428 12564 2.762745 ACATGGCTCTTCGTTTACGTT 58.237 42.857 0.00 0.00 40.80 3.99
4429 12565 2.450609 ACATGGCTCTTCGTTTACGT 57.549 45.000 0.00 0.00 40.80 3.57
4430 12566 2.734606 TGAACATGGCTCTTCGTTTACG 59.265 45.455 0.00 0.00 41.45 3.18
4431 12567 3.994392 TCTGAACATGGCTCTTCGTTTAC 59.006 43.478 0.00 0.00 0.00 2.01
4432 12568 3.994392 GTCTGAACATGGCTCTTCGTTTA 59.006 43.478 0.00 0.00 0.00 2.01
4433 12569 2.808543 GTCTGAACATGGCTCTTCGTTT 59.191 45.455 0.00 0.00 0.00 3.60
4434 12570 2.417719 GTCTGAACATGGCTCTTCGTT 58.582 47.619 0.00 0.00 0.00 3.85
4435 12571 1.670087 CGTCTGAACATGGCTCTTCGT 60.670 52.381 0.00 0.00 0.00 3.85
4436 12572 0.994995 CGTCTGAACATGGCTCTTCG 59.005 55.000 0.00 0.00 0.00 3.79
4437 12573 2.266554 CTCGTCTGAACATGGCTCTTC 58.733 52.381 0.00 0.00 0.00 2.87
4438 12574 1.066573 CCTCGTCTGAACATGGCTCTT 60.067 52.381 0.00 0.00 0.00 2.85
4439 12575 0.534412 CCTCGTCTGAACATGGCTCT 59.466 55.000 0.00 0.00 0.00 4.09
4440 12576 0.532573 TCCTCGTCTGAACATGGCTC 59.467 55.000 0.00 0.00 0.00 4.70
4441 12577 0.534412 CTCCTCGTCTGAACATGGCT 59.466 55.000 0.00 0.00 0.00 4.75
4442 12578 0.460987 CCTCCTCGTCTGAACATGGC 60.461 60.000 0.00 0.00 0.00 4.40
4443 12579 3.748863 CCTCCTCGTCTGAACATGG 57.251 57.895 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.