Multiple sequence alignment - TraesCS3D01G435200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G435200 chr3D 100.000 4000 0 0 1 4000 547514015 547510016 0.000000e+00 7387
1 TraesCS3D01G435200 chr3D 90.201 1541 124 17 2428 3949 547522271 547520739 0.000000e+00 1984
2 TraesCS3D01G435200 chr3D 95.426 940 35 3 960 1891 547523809 547522870 0.000000e+00 1491
3 TraesCS3D01G435200 chr3D 90.304 526 17 15 1934 2430 547522870 547522350 0.000000e+00 658
4 TraesCS3D01G435200 chr3D 84.302 516 52 12 2983 3494 547502950 547502460 1.010000e-130 477
5 TraesCS3D01G435200 chr3D 81.818 198 28 7 31 226 8688075 8687884 4.140000e-35 159
6 TraesCS3D01G435200 chr3D 90.435 115 10 1 3836 3949 547481177 547481063 2.490000e-32 150
7 TraesCS3D01G435200 chr3A 92.805 1501 81 16 741 2238 684522617 684521141 0.000000e+00 2148
8 TraesCS3D01G435200 chr3A 91.168 1019 69 7 2428 3444 684520922 684519923 0.000000e+00 1363
9 TraesCS3D01G435200 chr3A 85.289 571 57 17 2943 3494 684467415 684466853 7.500000e-157 564
10 TraesCS3D01G435200 chr3A 96.753 154 5 0 3550 3703 684519921 684519768 1.430000e-64 257
11 TraesCS3D01G435200 chr3A 90.278 144 10 3 2269 2412 684521147 684521008 6.830000e-43 185
12 TraesCS3D01G435200 chr3A 93.043 115 7 1 3836 3949 684466518 684466404 2.470000e-37 167
13 TraesCS3D01G435200 chr5B 84.528 265 38 2 481 743 446430700 446430437 3.970000e-65 259
14 TraesCS3D01G435200 chr5B 82.197 264 40 6 481 739 675950445 675950184 1.870000e-53 220
15 TraesCS3D01G435200 chr7B 83.673 245 35 5 483 725 346212734 346212493 4.020000e-55 226
16 TraesCS3D01G435200 chr6A 82.443 262 42 3 480 738 599681670 599681930 4.020000e-55 226
17 TraesCS3D01G435200 chr6A 82.090 201 34 2 2532 2732 36383966 36384164 1.910000e-38 171
18 TraesCS3D01G435200 chr6A 88.350 103 12 0 2626 2728 413527579 413527477 1.510000e-24 124
19 TraesCS3D01G435200 chr4A 81.685 273 44 5 480 747 734105639 734105368 5.200000e-54 222
20 TraesCS3D01G435200 chr2B 82.937 252 37 5 480 727 133949976 133949727 5.200000e-54 222
21 TraesCS3D01G435200 chr7A 83.539 243 32 8 480 717 566347747 566347986 1.870000e-53 220
22 TraesCS3D01G435200 chr3B 81.955 266 43 4 481 743 11906876 11906613 1.870000e-53 220
23 TraesCS3D01G435200 chr3B 80.519 231 33 12 1 226 342492680 342492903 2.470000e-37 167
24 TraesCS3D01G435200 chr3B 81.773 203 28 8 31 226 73303006 73302806 1.150000e-35 161
25 TraesCS3D01G435200 chr1D 82.470 251 35 8 480 725 2227292 2227046 1.130000e-50 211
26 TraesCS3D01G435200 chr1B 86.000 200 25 3 2533 2731 412896639 412896442 1.130000e-50 211
27 TraesCS3D01G435200 chr1B 82.063 223 30 9 11 226 334434095 334434314 8.830000e-42 182
28 TraesCS3D01G435200 chr1B 79.221 231 33 13 5 226 310401844 310401620 3.220000e-31 147
29 TraesCS3D01G435200 chr5D 82.833 233 25 13 2 226 12068067 12067842 1.130000e-45 195
30 TraesCS3D01G435200 chr5A 84.848 198 22 6 2534 2727 653300074 653300267 4.080000e-45 193
31 TraesCS3D01G435200 chr5A 81.633 196 35 1 2533 2728 238431462 238431268 1.150000e-35 161
32 TraesCS3D01G435200 chr5A 80.203 197 38 1 2532 2728 698642071 698641876 3.220000e-31 147
33 TraesCS3D01G435200 chr1A 83.590 195 29 3 2533 2726 35544155 35544347 3.180000e-41 180
34 TraesCS3D01G435200 chr1A 82.653 196 33 1 2533 2728 406619610 406619804 5.310000e-39 172
35 TraesCS3D01G435200 chr2D 81.643 207 31 7 30 233 4279181 4279383 8.890000e-37 165
36 TraesCS3D01G435200 chr4D 82.979 188 24 7 45 226 372531656 372531841 3.200000e-36 163
37 TraesCS3D01G435200 chr4D 81.683 202 26 9 1 198 488419016 488418822 1.490000e-34 158
38 TraesCS3D01G435200 chr7D 82.822 163 20 7 2534 2694 551113334 551113490 5.390000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G435200 chr3D 547510016 547514015 3999 True 7387.000000 7387 100.000 1 4000 1 chr3D.!!$R4 3999
1 TraesCS3D01G435200 chr3D 547520739 547523809 3070 True 1377.666667 1984 91.977 960 3949 3 chr3D.!!$R5 2989
2 TraesCS3D01G435200 chr3A 684519768 684522617 2849 True 988.250000 2148 92.751 741 3703 4 chr3A.!!$R2 2962
3 TraesCS3D01G435200 chr3A 684466404 684467415 1011 True 365.500000 564 89.166 2943 3949 2 chr3A.!!$R1 1006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.110238 GCACGATTTTGCTTCTGCGA 60.110 50.000 0.0 0.0 43.34 5.10 F
796 797 0.179048 TCACAACCTCACTGGCACTG 60.179 55.000 0.0 0.0 40.22 3.66 F
1369 1370 0.670546 GCTCAACGGCAAGCTCTACA 60.671 55.000 0.0 0.0 35.60 2.74 F
1540 1544 1.000163 GACGCCATCGAGTACATCCAT 60.000 52.381 0.0 0.0 39.41 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1159 1160 0.534412 AGGTCAGTCGATTCAGCCTG 59.466 55.0 0.00 0.00 0.0 4.85 R
2242 2317 0.024619 GTTGACGCGCGGTTAATCTC 59.975 55.0 35.22 20.46 0.0 2.75 R
2244 2319 0.247145 CTGTTGACGCGCGGTTAATC 60.247 55.0 35.22 22.00 0.0 1.75 R
3503 3683 0.039256 CAATGCAAGTTGTGACCCGG 60.039 55.0 4.48 0.00 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.324383 TTTTTCTTTCGTGGGAGGGC 58.676 50.000 0.00 0.00 0.00 5.19
50 51 0.183971 TTTTCTTTCGTGGGAGGGCA 59.816 50.000 0.00 0.00 0.00 5.36
51 52 0.536460 TTTCTTTCGTGGGAGGGCAC 60.536 55.000 0.00 0.00 0.00 5.01
52 53 2.725203 TTCTTTCGTGGGAGGGCACG 62.725 60.000 0.00 0.00 45.09 5.34
53 54 4.323477 TTTCGTGGGAGGGCACGG 62.323 66.667 0.00 0.00 44.03 4.94
56 57 4.636435 CGTGGGAGGGCACGGTTT 62.636 66.667 0.00 0.00 40.67 3.27
57 58 2.203437 GTGGGAGGGCACGGTTTT 60.203 61.111 0.00 0.00 0.00 2.43
58 59 2.203422 TGGGAGGGCACGGTTTTG 60.203 61.111 0.00 0.00 0.00 2.44
59 60 3.680786 GGGAGGGCACGGTTTTGC 61.681 66.667 0.00 0.00 42.18 3.68
60 61 2.597510 GGAGGGCACGGTTTTGCT 60.598 61.111 0.00 0.00 42.56 3.91
61 62 2.200337 GGAGGGCACGGTTTTGCTT 61.200 57.895 0.00 0.00 42.56 3.91
62 63 1.285950 GAGGGCACGGTTTTGCTTC 59.714 57.895 0.00 0.00 42.56 3.86
63 64 2.142357 GAGGGCACGGTTTTGCTTCC 62.142 60.000 0.00 0.00 42.56 3.46
68 69 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
69 70 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
70 71 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
71 72 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
75 76 2.512515 GCTTCCGCGAGAGGCATT 60.513 61.111 20.89 0.00 46.54 3.56
76 77 2.817423 GCTTCCGCGAGAGGCATTG 61.817 63.158 20.89 0.00 46.54 2.82
77 78 2.817423 CTTCCGCGAGAGGCATTGC 61.817 63.158 8.23 0.00 43.84 3.56
78 79 3.604129 TTCCGCGAGAGGCATTGCA 62.604 57.895 8.23 0.00 43.84 4.08
79 80 3.570638 CCGCGAGAGGCATTGCAG 61.571 66.667 8.23 0.00 43.84 4.41
80 81 2.816958 CGCGAGAGGCATTGCAGT 60.817 61.111 11.39 0.00 43.84 4.40
81 82 1.519234 CGCGAGAGGCATTGCAGTA 60.519 57.895 11.39 0.00 43.84 2.74
82 83 1.756375 CGCGAGAGGCATTGCAGTAC 61.756 60.000 11.39 0.00 43.84 2.73
83 84 1.432270 GCGAGAGGCATTGCAGTACC 61.432 60.000 11.39 0.00 42.87 3.34
84 85 0.176680 CGAGAGGCATTGCAGTACCT 59.823 55.000 11.39 0.00 34.43 3.08
87 88 2.409948 GAGGCATTGCAGTACCTCTT 57.590 50.000 18.81 0.00 44.41 2.85
88 89 2.012673 GAGGCATTGCAGTACCTCTTG 58.987 52.381 18.81 0.00 44.41 3.02
89 90 1.098050 GGCATTGCAGTACCTCTTGG 58.902 55.000 11.39 0.00 39.83 3.61
90 91 1.340017 GGCATTGCAGTACCTCTTGGA 60.340 52.381 11.39 0.00 37.04 3.53
91 92 2.436417 GCATTGCAGTACCTCTTGGAA 58.564 47.619 3.15 0.00 37.04 3.53
92 93 2.819608 GCATTGCAGTACCTCTTGGAAA 59.180 45.455 3.15 0.00 37.04 3.13
93 94 3.366374 GCATTGCAGTACCTCTTGGAAAC 60.366 47.826 3.15 0.00 37.04 2.78
94 95 2.163818 TGCAGTACCTCTTGGAAACG 57.836 50.000 0.00 0.00 37.04 3.60
95 96 1.270625 TGCAGTACCTCTTGGAAACGG 60.271 52.381 0.00 0.00 37.04 4.44
96 97 1.001633 GCAGTACCTCTTGGAAACGGA 59.998 52.381 0.00 0.00 37.04 4.69
97 98 2.549349 GCAGTACCTCTTGGAAACGGAA 60.549 50.000 0.00 0.00 37.04 4.30
98 99 3.735591 CAGTACCTCTTGGAAACGGAAA 58.264 45.455 0.00 0.00 37.04 3.13
99 100 4.131596 CAGTACCTCTTGGAAACGGAAAA 58.868 43.478 0.00 0.00 37.04 2.29
100 101 4.577283 CAGTACCTCTTGGAAACGGAAAAA 59.423 41.667 0.00 0.00 37.04 1.94
120 121 3.801114 AAGGCGTTCTTTTTCTTTGCT 57.199 38.095 0.00 0.00 29.99 3.91
121 122 3.801114 AGGCGTTCTTTTTCTTTGCTT 57.199 38.095 0.00 0.00 0.00 3.91
122 123 4.123497 AGGCGTTCTTTTTCTTTGCTTT 57.877 36.364 0.00 0.00 0.00 3.51
123 124 4.112634 AGGCGTTCTTTTTCTTTGCTTTC 58.887 39.130 0.00 0.00 0.00 2.62
124 125 3.061205 GGCGTTCTTTTTCTTTGCTTTCG 60.061 43.478 0.00 0.00 0.00 3.46
125 126 3.546271 GCGTTCTTTTTCTTTGCTTTCGT 59.454 39.130 0.00 0.00 0.00 3.85
126 127 4.546268 GCGTTCTTTTTCTTTGCTTTCGTG 60.546 41.667 0.00 0.00 0.00 4.35
127 128 4.791163 CGTTCTTTTTCTTTGCTTTCGTGA 59.209 37.500 0.00 0.00 0.00 4.35
128 129 5.053025 CGTTCTTTTTCTTTGCTTTCGTGAG 60.053 40.000 0.00 0.00 0.00 3.51
129 130 5.811399 TCTTTTTCTTTGCTTTCGTGAGA 57.189 34.783 0.00 0.00 39.20 3.27
130 131 6.377327 TCTTTTTCTTTGCTTTCGTGAGAT 57.623 33.333 0.00 0.00 41.60 2.75
131 132 6.201517 TCTTTTTCTTTGCTTTCGTGAGATG 58.798 36.000 0.00 0.00 41.60 2.90
132 133 3.542712 TTCTTTGCTTTCGTGAGATGC 57.457 42.857 0.00 0.00 41.60 3.91
133 134 2.493035 TCTTTGCTTTCGTGAGATGCA 58.507 42.857 0.00 0.00 44.21 3.96
134 135 2.224079 TCTTTGCTTTCGTGAGATGCAC 59.776 45.455 0.00 0.00 45.05 4.57
143 144 2.907910 GTGAGATGCACGATTTTGCT 57.092 45.000 0.00 0.00 43.41 3.91
144 145 3.207474 GTGAGATGCACGATTTTGCTT 57.793 42.857 0.00 0.00 43.41 3.91
145 146 3.166657 GTGAGATGCACGATTTTGCTTC 58.833 45.455 0.00 0.00 43.62 3.86
148 149 1.916000 GATGCACGATTTTGCTTCTGC 59.084 47.619 0.00 0.00 43.41 4.26
149 150 0.385849 TGCACGATTTTGCTTCTGCG 60.386 50.000 0.00 0.00 43.41 5.18
150 151 0.110238 GCACGATTTTGCTTCTGCGA 60.110 50.000 0.00 0.00 43.34 5.10
151 152 1.874562 CACGATTTTGCTTCTGCGAG 58.125 50.000 0.00 0.00 43.34 5.03
152 153 1.460743 CACGATTTTGCTTCTGCGAGA 59.539 47.619 0.00 0.00 43.34 4.04
153 154 1.728971 ACGATTTTGCTTCTGCGAGAG 59.271 47.619 0.00 0.00 43.34 3.20
154 155 1.061711 CGATTTTGCTTCTGCGAGAGG 59.938 52.381 0.00 0.00 43.34 3.69
155 156 0.807496 ATTTTGCTTCTGCGAGAGGC 59.193 50.000 11.53 11.53 46.21 4.70
172 173 3.164576 CACGATTTGCTTCCGCGA 58.835 55.556 8.23 0.00 39.65 5.87
173 174 1.059369 CACGATTTGCTTCCGCGAG 59.941 57.895 8.23 0.00 39.65 5.03
174 175 1.080093 ACGATTTGCTTCCGCGAGA 60.080 52.632 8.23 0.00 39.65 4.04
175 176 1.078759 ACGATTTGCTTCCGCGAGAG 61.079 55.000 8.23 5.93 39.65 3.20
176 177 1.756375 CGATTTGCTTCCGCGAGAGG 61.756 60.000 8.23 4.88 39.65 3.69
180 181 3.267860 GCTTCCGCGAGAGGCATG 61.268 66.667 20.89 0.00 46.54 4.06
181 182 2.587194 CTTCCGCGAGAGGCATGG 60.587 66.667 8.23 0.00 43.84 3.66
182 183 4.838152 TTCCGCGAGAGGCATGGC 62.838 66.667 12.14 12.14 43.84 4.40
216 217 6.572153 GGAAACGGAAAAATAAACGTGTTT 57.428 33.333 3.21 3.21 39.76 2.83
217 218 6.991655 GGAAACGGAAAAATAAACGTGTTTT 58.008 32.000 2.97 0.00 39.76 2.43
218 219 7.112397 GGAAACGGAAAAATAAACGTGTTTTC 58.888 34.615 2.97 14.09 39.76 2.29
246 247 7.724305 TTTTACAAGTGTTAGCTTCGATTCT 57.276 32.000 0.00 0.00 0.00 2.40
247 248 7.724305 TTTACAAGTGTTAGCTTCGATTCTT 57.276 32.000 0.00 0.00 0.00 2.52
248 249 5.847670 ACAAGTGTTAGCTTCGATTCTTC 57.152 39.130 0.00 0.00 0.00 2.87
249 250 5.542779 ACAAGTGTTAGCTTCGATTCTTCT 58.457 37.500 0.00 0.00 0.00 2.85
250 251 6.688578 ACAAGTGTTAGCTTCGATTCTTCTA 58.311 36.000 0.00 0.00 0.00 2.10
251 252 6.586844 ACAAGTGTTAGCTTCGATTCTTCTAC 59.413 38.462 0.00 0.00 0.00 2.59
252 253 6.268825 AGTGTTAGCTTCGATTCTTCTACA 57.731 37.500 0.00 0.00 0.00 2.74
253 254 6.688578 AGTGTTAGCTTCGATTCTTCTACAA 58.311 36.000 0.00 0.00 0.00 2.41
254 255 7.152645 AGTGTTAGCTTCGATTCTTCTACAAA 58.847 34.615 0.00 0.00 0.00 2.83
255 256 7.116519 AGTGTTAGCTTCGATTCTTCTACAAAC 59.883 37.037 0.00 0.00 0.00 2.93
256 257 7.116519 GTGTTAGCTTCGATTCTTCTACAAACT 59.883 37.037 0.00 0.00 0.00 2.66
257 258 7.328737 TGTTAGCTTCGATTCTTCTACAAACTC 59.671 37.037 0.00 0.00 0.00 3.01
258 259 4.859798 AGCTTCGATTCTTCTACAAACTCG 59.140 41.667 0.00 0.00 0.00 4.18
259 260 4.621886 GCTTCGATTCTTCTACAAACTCGT 59.378 41.667 0.00 0.00 0.00 4.18
260 261 5.798934 GCTTCGATTCTTCTACAAACTCGTA 59.201 40.000 0.00 0.00 0.00 3.43
261 262 6.237253 GCTTCGATTCTTCTACAAACTCGTAC 60.237 42.308 0.00 0.00 0.00 3.67
262 263 6.492007 TCGATTCTTCTACAAACTCGTACT 57.508 37.500 0.00 0.00 0.00 2.73
263 264 6.541086 TCGATTCTTCTACAAACTCGTACTC 58.459 40.000 0.00 0.00 0.00 2.59
264 265 6.148315 TCGATTCTTCTACAAACTCGTACTCA 59.852 38.462 0.00 0.00 0.00 3.41
265 266 6.248839 CGATTCTTCTACAAACTCGTACTCAC 59.751 42.308 0.00 0.00 0.00 3.51
266 267 6.630444 TTCTTCTACAAACTCGTACTCACT 57.370 37.500 0.00 0.00 0.00 3.41
267 268 6.238610 TCTTCTACAAACTCGTACTCACTC 57.761 41.667 0.00 0.00 0.00 3.51
268 269 5.180868 TCTTCTACAAACTCGTACTCACTCC 59.819 44.000 0.00 0.00 0.00 3.85
269 270 2.701073 ACAAACTCGTACTCACTCCG 57.299 50.000 0.00 0.00 0.00 4.63
270 271 1.952296 ACAAACTCGTACTCACTCCGT 59.048 47.619 0.00 0.00 0.00 4.69
271 272 2.360165 ACAAACTCGTACTCACTCCGTT 59.640 45.455 0.00 0.00 0.00 4.44
272 273 2.978489 CAAACTCGTACTCACTCCGTTC 59.022 50.000 0.00 0.00 0.00 3.95
273 274 2.181954 ACTCGTACTCACTCCGTTCT 57.818 50.000 0.00 0.00 0.00 3.01
274 275 3.325293 ACTCGTACTCACTCCGTTCTA 57.675 47.619 0.00 0.00 0.00 2.10
275 276 3.871485 ACTCGTACTCACTCCGTTCTAT 58.129 45.455 0.00 0.00 0.00 1.98
276 277 4.260170 ACTCGTACTCACTCCGTTCTATT 58.740 43.478 0.00 0.00 0.00 1.73
277 278 4.699257 ACTCGTACTCACTCCGTTCTATTT 59.301 41.667 0.00 0.00 0.00 1.40
278 279 4.978186 TCGTACTCACTCCGTTCTATTTG 58.022 43.478 0.00 0.00 0.00 2.32
279 280 3.546670 CGTACTCACTCCGTTCTATTTGC 59.453 47.826 0.00 0.00 0.00 3.68
280 281 3.963428 ACTCACTCCGTTCTATTTGCT 57.037 42.857 0.00 0.00 0.00 3.91
281 282 3.851098 ACTCACTCCGTTCTATTTGCTC 58.149 45.455 0.00 0.00 0.00 4.26
282 283 3.190874 CTCACTCCGTTCTATTTGCTCC 58.809 50.000 0.00 0.00 0.00 4.70
283 284 2.565391 TCACTCCGTTCTATTTGCTCCA 59.435 45.455 0.00 0.00 0.00 3.86
284 285 2.673368 CACTCCGTTCTATTTGCTCCAC 59.327 50.000 0.00 0.00 0.00 4.02
285 286 2.301870 ACTCCGTTCTATTTGCTCCACA 59.698 45.455 0.00 0.00 0.00 4.17
286 287 3.055094 ACTCCGTTCTATTTGCTCCACAT 60.055 43.478 0.00 0.00 0.00 3.21
287 288 4.161565 ACTCCGTTCTATTTGCTCCACATA 59.838 41.667 0.00 0.00 0.00 2.29
288 289 5.163301 ACTCCGTTCTATTTGCTCCACATAT 60.163 40.000 0.00 0.00 0.00 1.78
289 290 5.056480 TCCGTTCTATTTGCTCCACATATG 58.944 41.667 0.00 0.00 0.00 1.78
290 291 4.816385 CCGTTCTATTTGCTCCACATATGT 59.184 41.667 1.41 1.41 0.00 2.29
291 292 5.296780 CCGTTCTATTTGCTCCACATATGTT 59.703 40.000 5.37 0.00 0.00 2.71
292 293 6.481976 CCGTTCTATTTGCTCCACATATGTTA 59.518 38.462 5.37 0.00 0.00 2.41
293 294 7.307396 CCGTTCTATTTGCTCCACATATGTTAG 60.307 40.741 5.37 8.04 0.00 2.34
294 295 7.355778 GTTCTATTTGCTCCACATATGTTAGC 58.644 38.462 23.98 23.98 35.90 3.09
295 296 6.830912 TCTATTTGCTCCACATATGTTAGCT 58.169 36.000 27.80 17.17 36.17 3.32
296 297 7.282585 TCTATTTGCTCCACATATGTTAGCTT 58.717 34.615 27.80 19.30 36.17 3.74
297 298 6.780457 ATTTGCTCCACATATGTTAGCTTT 57.220 33.333 27.80 16.37 36.17 3.51
298 299 5.565592 TTGCTCCACATATGTTAGCTTTG 57.434 39.130 27.80 9.84 36.17 2.77
299 300 4.588899 TGCTCCACATATGTTAGCTTTGT 58.411 39.130 27.80 0.00 36.17 2.83
300 301 4.635765 TGCTCCACATATGTTAGCTTTGTC 59.364 41.667 27.80 9.67 36.17 3.18
301 302 4.878397 GCTCCACATATGTTAGCTTTGTCT 59.122 41.667 23.66 0.00 33.79 3.41
302 303 6.049149 GCTCCACATATGTTAGCTTTGTCTA 58.951 40.000 23.66 0.00 33.79 2.59
303 304 6.538742 GCTCCACATATGTTAGCTTTGTCTAA 59.461 38.462 23.66 0.00 33.79 2.10
304 305 7.065803 GCTCCACATATGTTAGCTTTGTCTAAA 59.934 37.037 23.66 0.00 33.79 1.85
305 306 8.492673 TCCACATATGTTAGCTTTGTCTAAAG 57.507 34.615 5.37 0.00 44.86 1.85
306 307 8.100791 TCCACATATGTTAGCTTTGTCTAAAGT 58.899 33.333 5.37 0.00 44.11 2.66
307 308 8.391106 CCACATATGTTAGCTTTGTCTAAAGTC 58.609 37.037 5.37 0.00 44.11 3.01
308 309 8.935844 CACATATGTTAGCTTTGTCTAAAGTCA 58.064 33.333 5.37 0.00 44.11 3.41
309 310 9.502091 ACATATGTTAGCTTTGTCTAAAGTCAA 57.498 29.630 1.41 0.00 44.11 3.18
310 311 9.760660 CATATGTTAGCTTTGTCTAAAGTCAAC 57.239 33.333 0.00 0.00 44.11 3.18
311 312 9.726438 ATATGTTAGCTTTGTCTAAAGTCAACT 57.274 29.630 0.00 3.35 44.11 3.16
313 314 9.726438 ATGTTAGCTTTGTCTAAAGTCAACTAT 57.274 29.630 0.00 7.83 44.11 2.12
377 378 6.875948 TGGAATACCAAATCGATACCATTG 57.124 37.500 0.00 0.00 43.91 2.82
378 379 5.767665 TGGAATACCAAATCGATACCATTGG 59.232 40.000 20.22 20.22 46.14 3.16
379 380 6.001460 GGAATACCAAATCGATACCATTGGA 58.999 40.000 26.05 14.03 44.01 3.53
380 381 6.659242 GGAATACCAAATCGATACCATTGGAT 59.341 38.462 26.05 15.24 44.01 3.41
381 382 7.176690 GGAATACCAAATCGATACCATTGGATT 59.823 37.037 26.05 20.35 44.01 3.01
382 383 7.687941 ATACCAAATCGATACCATTGGATTC 57.312 36.000 26.05 4.74 44.01 2.52
383 384 5.445069 ACCAAATCGATACCATTGGATTCA 58.555 37.500 26.05 0.00 44.01 2.57
384 385 6.070656 ACCAAATCGATACCATTGGATTCAT 58.929 36.000 26.05 7.08 44.01 2.57
385 386 6.550854 ACCAAATCGATACCATTGGATTCATT 59.449 34.615 26.05 6.49 44.01 2.57
386 387 7.723616 ACCAAATCGATACCATTGGATTCATTA 59.276 33.333 26.05 0.00 44.01 1.90
387 388 8.742777 CCAAATCGATACCATTGGATTCATTAT 58.257 33.333 17.98 0.00 44.01 1.28
390 391 9.519191 AATCGATACCATTGGATTCATTATTCA 57.481 29.630 10.37 0.00 0.00 2.57
391 392 8.916628 TCGATACCATTGGATTCATTATTCAA 57.083 30.769 10.37 0.00 36.18 2.69
392 393 9.519191 TCGATACCATTGGATTCATTATTCAAT 57.481 29.630 10.37 0.00 42.18 2.57
421 422 9.612066 ATTTTCACACCATACAGATTTGTTTTT 57.388 25.926 0.00 0.00 38.76 1.94
422 423 8.417780 TTTCACACCATACAGATTTGTTTTTG 57.582 30.769 0.00 0.00 38.76 2.44
423 424 7.106439 TCACACCATACAGATTTGTTTTTGT 57.894 32.000 0.00 0.00 38.76 2.83
424 425 8.226819 TCACACCATACAGATTTGTTTTTGTA 57.773 30.769 0.00 0.00 38.76 2.41
425 426 8.687242 TCACACCATACAGATTTGTTTTTGTAA 58.313 29.630 0.00 0.00 38.76 2.41
426 427 9.307121 CACACCATACAGATTTGTTTTTGTAAA 57.693 29.630 0.00 0.00 38.76 2.01
460 461 8.918202 TTGACATCTATAAACTTGTCCAACTT 57.082 30.769 0.00 0.00 38.12 2.66
461 462 8.918202 TGACATCTATAAACTTGTCCAACTTT 57.082 30.769 0.00 0.00 38.12 2.66
474 475 9.961265 ACTTGTCCAACTTTATAAACTTTTAGC 57.039 29.630 0.00 0.00 0.00 3.09
475 476 9.959749 CTTGTCCAACTTTATAAACTTTTAGCA 57.040 29.630 0.00 0.00 0.00 3.49
479 480 9.471084 TCCAACTTTATAAACTTTTAGCAAAGC 57.529 29.630 13.47 0.00 43.03 3.51
480 481 9.476202 CCAACTTTATAAACTTTTAGCAAAGCT 57.524 29.630 13.47 0.00 43.03 3.74
482 483 9.692749 AACTTTATAAACTTTTAGCAAAGCTCC 57.307 29.630 13.47 0.00 43.03 4.70
483 484 8.304596 ACTTTATAAACTTTTAGCAAAGCTCCC 58.695 33.333 13.47 0.00 43.03 4.30
484 485 8.417273 TTTATAAACTTTTAGCAAAGCTCCCT 57.583 30.769 0.00 0.00 43.03 4.20
485 486 4.855715 AAACTTTTAGCAAAGCTCCCTC 57.144 40.909 0.00 0.00 43.03 4.30
486 487 3.797559 ACTTTTAGCAAAGCTCCCTCT 57.202 42.857 0.00 0.00 43.03 3.69
487 488 3.416156 ACTTTTAGCAAAGCTCCCTCTG 58.584 45.455 0.00 0.00 43.03 3.35
488 489 3.181439 ACTTTTAGCAAAGCTCCCTCTGT 60.181 43.478 0.00 0.00 43.03 3.41
489 490 3.508845 TTTAGCAAAGCTCCCTCTGTT 57.491 42.857 0.00 0.00 40.44 3.16
490 491 3.508845 TTAGCAAAGCTCCCTCTGTTT 57.491 42.857 0.00 0.00 40.44 2.83
491 492 2.371658 AGCAAAGCTCCCTCTGTTTT 57.628 45.000 0.00 0.00 30.62 2.43
492 493 2.670939 AGCAAAGCTCCCTCTGTTTTT 58.329 42.857 0.00 0.00 30.62 1.94
493 494 3.832527 AGCAAAGCTCCCTCTGTTTTTA 58.167 40.909 0.00 0.00 30.62 1.52
494 495 4.411013 AGCAAAGCTCCCTCTGTTTTTAT 58.589 39.130 0.00 0.00 30.62 1.40
495 496 4.835056 AGCAAAGCTCCCTCTGTTTTTATT 59.165 37.500 0.00 0.00 30.62 1.40
496 497 5.305386 AGCAAAGCTCCCTCTGTTTTTATTT 59.695 36.000 0.00 0.00 30.62 1.40
497 498 6.493458 AGCAAAGCTCCCTCTGTTTTTATTTA 59.507 34.615 0.00 0.00 30.62 1.40
498 499 6.586463 GCAAAGCTCCCTCTGTTTTTATTTAC 59.414 38.462 0.00 0.00 0.00 2.01
499 500 7.523873 GCAAAGCTCCCTCTGTTTTTATTTACT 60.524 37.037 0.00 0.00 0.00 2.24
500 501 7.689446 AAGCTCCCTCTGTTTTTATTTACTC 57.311 36.000 0.00 0.00 0.00 2.59
501 502 6.181190 AGCTCCCTCTGTTTTTATTTACTCC 58.819 40.000 0.00 0.00 0.00 3.85
502 503 5.944007 GCTCCCTCTGTTTTTATTTACTCCA 59.056 40.000 0.00 0.00 0.00 3.86
503 504 6.127980 GCTCCCTCTGTTTTTATTTACTCCAC 60.128 42.308 0.00 0.00 0.00 4.02
504 505 6.843752 TCCCTCTGTTTTTATTTACTCCACA 58.156 36.000 0.00 0.00 0.00 4.17
505 506 7.466804 TCCCTCTGTTTTTATTTACTCCACAT 58.533 34.615 0.00 0.00 0.00 3.21
506 507 8.607713 TCCCTCTGTTTTTATTTACTCCACATA 58.392 33.333 0.00 0.00 0.00 2.29
507 508 9.408648 CCCTCTGTTTTTATTTACTCCACATAT 57.591 33.333 0.00 0.00 0.00 1.78
519 520 8.492673 TTTACTCCACATATTAGCTTTGTCTG 57.507 34.615 0.00 0.00 0.00 3.51
520 521 6.299805 ACTCCACATATTAGCTTTGTCTGA 57.700 37.500 0.00 0.00 0.00 3.27
521 522 6.711277 ACTCCACATATTAGCTTTGTCTGAA 58.289 36.000 0.00 0.00 0.00 3.02
522 523 6.820656 ACTCCACATATTAGCTTTGTCTGAAG 59.179 38.462 0.00 0.00 0.00 3.02
523 524 6.711277 TCCACATATTAGCTTTGTCTGAAGT 58.289 36.000 0.00 0.00 0.00 3.01
524 525 7.168219 TCCACATATTAGCTTTGTCTGAAGTT 58.832 34.615 0.00 0.00 0.00 2.66
525 526 8.318412 TCCACATATTAGCTTTGTCTGAAGTTA 58.682 33.333 0.00 0.00 0.00 2.24
526 527 8.946085 CCACATATTAGCTTTGTCTGAAGTTAA 58.054 33.333 0.00 0.00 36.95 2.01
569 570 9.801873 GCAAATTTATAGAGAAAACTATTGGCA 57.198 29.630 0.00 0.00 35.19 4.92
581 582 9.860650 AGAAAACTATTGGCATATACAATACCA 57.139 29.630 7.56 0.00 39.18 3.25
586 587 9.806448 ACTATTGGCATATACAATACCAAATCA 57.194 29.630 7.56 0.00 43.21 2.57
710 711 5.132437 GACTTCAGTCAAAGCTAATACGC 57.868 43.478 1.86 0.00 44.18 4.42
711 712 3.612860 ACTTCAGTCAAAGCTAATACGCG 59.387 43.478 3.53 3.53 34.40 6.01
712 713 2.536365 TCAGTCAAAGCTAATACGCGG 58.464 47.619 12.47 0.00 34.40 6.46
713 714 2.164827 TCAGTCAAAGCTAATACGCGGA 59.835 45.455 12.47 0.00 34.40 5.54
714 715 2.535984 CAGTCAAAGCTAATACGCGGAG 59.464 50.000 12.47 2.88 34.40 4.63
715 716 2.165845 AGTCAAAGCTAATACGCGGAGT 59.834 45.455 12.47 2.60 34.40 3.85
716 717 3.379372 AGTCAAAGCTAATACGCGGAGTA 59.621 43.478 12.47 4.11 40.03 2.59
717 718 4.107622 GTCAAAGCTAATACGCGGAGTAA 58.892 43.478 12.47 0.00 39.04 2.24
718 719 4.563976 GTCAAAGCTAATACGCGGAGTAAA 59.436 41.667 12.47 0.00 39.04 2.01
719 720 5.233689 GTCAAAGCTAATACGCGGAGTAAAT 59.766 40.000 12.47 0.00 39.04 1.40
720 721 6.418819 GTCAAAGCTAATACGCGGAGTAAATA 59.581 38.462 12.47 0.00 39.04 1.40
721 722 6.979817 TCAAAGCTAATACGCGGAGTAAATAA 59.020 34.615 12.47 0.00 39.04 1.40
722 723 7.492020 TCAAAGCTAATACGCGGAGTAAATAAA 59.508 33.333 12.47 0.00 39.04 1.40
723 724 7.775397 AAGCTAATACGCGGAGTAAATAAAA 57.225 32.000 12.47 0.00 39.04 1.52
724 725 7.775397 AGCTAATACGCGGAGTAAATAAAAA 57.225 32.000 12.47 0.00 39.04 1.94
725 726 7.624661 AGCTAATACGCGGAGTAAATAAAAAC 58.375 34.615 12.47 0.00 39.04 2.43
726 727 7.278424 AGCTAATACGCGGAGTAAATAAAAACA 59.722 33.333 12.47 0.00 39.04 2.83
727 728 7.904461 GCTAATACGCGGAGTAAATAAAAACAA 59.096 33.333 12.47 0.00 39.04 2.83
728 729 9.757859 CTAATACGCGGAGTAAATAAAAACAAA 57.242 29.630 12.47 0.00 39.04 2.83
729 730 8.438732 AATACGCGGAGTAAATAAAAACAAAC 57.561 30.769 12.47 0.00 39.04 2.93
730 731 4.905295 ACGCGGAGTAAATAAAAACAAACG 59.095 37.500 12.47 0.00 0.00 3.60
731 732 4.318854 CGCGGAGTAAATAAAAACAAACGG 59.681 41.667 0.00 0.00 0.00 4.44
732 733 5.451039 GCGGAGTAAATAAAAACAAACGGA 58.549 37.500 0.00 0.00 0.00 4.69
733 734 5.566395 GCGGAGTAAATAAAAACAAACGGAG 59.434 40.000 0.00 0.00 0.00 4.63
735 736 7.571059 GCGGAGTAAATAAAAACAAACGGAGTA 60.571 37.037 0.00 0.00 45.00 2.59
736 737 7.741652 CGGAGTAAATAAAAACAAACGGAGTAC 59.258 37.037 0.00 0.00 45.00 2.73
737 738 8.777413 GGAGTAAATAAAAACAAACGGAGTACT 58.223 33.333 0.00 0.00 45.00 2.73
753 754 5.535406 CGGAGTACTACATGTCTATCCCTTT 59.465 44.000 0.00 0.00 0.00 3.11
756 757 7.040271 GGAGTACTACATGTCTATCCCTTTCTC 60.040 44.444 0.00 0.00 0.00 2.87
762 763 5.249393 ACATGTCTATCCCTTTCTCACAGTT 59.751 40.000 0.00 0.00 0.00 3.16
765 766 5.544176 TGTCTATCCCTTTCTCACAGTTTCT 59.456 40.000 0.00 0.00 0.00 2.52
769 770 5.623956 TCCCTTTCTCACAGTTTCTTGTA 57.376 39.130 0.00 0.00 0.00 2.41
773 774 5.120830 CCTTTCTCACAGTTTCTTGTATCCG 59.879 44.000 0.00 0.00 0.00 4.18
784 785 3.006940 TCTTGTATCCGCATTCACAACC 58.993 45.455 0.00 0.00 0.00 3.77
788 789 1.453155 ATCCGCATTCACAACCTCAC 58.547 50.000 0.00 0.00 0.00 3.51
791 792 0.518636 CGCATTCACAACCTCACTGG 59.481 55.000 0.00 0.00 42.93 4.00
794 795 1.267806 CATTCACAACCTCACTGGCAC 59.732 52.381 0.00 0.00 40.22 5.01
795 796 0.546122 TTCACAACCTCACTGGCACT 59.454 50.000 0.00 0.00 40.22 4.40
796 797 0.179048 TCACAACCTCACTGGCACTG 60.179 55.000 0.00 0.00 40.22 3.66
832 833 8.336801 AGATCTACTACAATTTTGTTTCCACC 57.663 34.615 0.63 0.00 42.35 4.61
841 842 6.760770 ACAATTTTGTTTCCACCAGTACAATG 59.239 34.615 0.00 0.00 38.47 2.82
906 907 0.754217 CCACCCCTGCTTGGATCATG 60.754 60.000 0.00 0.00 38.35 3.07
950 951 5.756833 AGAAACAAACAAGTAAGTACTCGGG 59.243 40.000 0.00 0.00 34.99 5.14
1159 1160 2.693074 GGACAGAGGATGAAGAGGACTC 59.307 54.545 0.00 0.00 0.00 3.36
1245 1246 2.675889 CGGCTACAACGGTTACTGGAAT 60.676 50.000 0.00 0.00 0.00 3.01
1369 1370 0.670546 GCTCAACGGCAAGCTCTACA 60.671 55.000 0.00 0.00 35.60 2.74
1478 1482 3.249799 TGTGCTAGTTGAATGAAACACCG 59.750 43.478 0.00 0.00 32.21 4.94
1526 1530 3.083349 CCATCCTCAGGGACGCCA 61.083 66.667 0.00 0.00 45.43 5.69
1540 1544 1.000163 GACGCCATCGAGTACATCCAT 60.000 52.381 0.00 0.00 39.41 3.41
1628 1632 4.143333 GCCATGCCCAGCTGCTTG 62.143 66.667 8.66 6.57 36.47 4.01
1654 1658 1.078710 ACTACAGCCCGTCCTTCCT 59.921 57.895 0.00 0.00 0.00 3.36
1700 1704 1.574702 GCCGGTGAAGAAAACGAGGG 61.575 60.000 1.90 0.00 0.00 4.30
1720 1724 2.590092 CCCCTGTCATTCCCGTCC 59.410 66.667 0.00 0.00 0.00 4.79
1775 1786 3.209812 CATCTCCGCCGGTCGAGA 61.210 66.667 20.50 20.50 41.67 4.04
1776 1787 2.203365 ATCTCCGCCGGTCGAGAT 60.203 61.111 22.52 22.52 41.67 2.75
1902 1913 1.369321 GCCATGGTCCTCCGATCTC 59.631 63.158 14.67 0.00 36.30 2.75
2197 2208 1.673920 TGTGTCCTTCGCCAAAACTTC 59.326 47.619 0.00 0.00 0.00 3.01
2253 2328 6.738832 AAAAACTTCCTAGAGATTAACCGC 57.261 37.500 0.00 0.00 0.00 5.68
2254 2329 3.712091 ACTTCCTAGAGATTAACCGCG 57.288 47.619 0.00 0.00 0.00 6.46
2255 2330 2.223758 ACTTCCTAGAGATTAACCGCGC 60.224 50.000 0.00 0.00 0.00 6.86
2256 2331 0.309922 TCCTAGAGATTAACCGCGCG 59.690 55.000 25.67 25.67 0.00 6.86
2257 2332 0.030369 CCTAGAGATTAACCGCGCGT 59.970 55.000 29.95 14.20 0.00 6.01
2258 2333 1.396644 CTAGAGATTAACCGCGCGTC 58.603 55.000 29.95 19.02 0.00 5.19
2259 2334 0.734309 TAGAGATTAACCGCGCGTCA 59.266 50.000 29.95 10.30 0.00 4.35
2260 2335 0.108992 AGAGATTAACCGCGCGTCAA 60.109 50.000 29.95 18.85 0.00 3.18
2261 2336 0.024619 GAGATTAACCGCGCGTCAAC 59.975 55.000 29.95 14.18 0.00 3.18
2262 2337 0.668096 AGATTAACCGCGCGTCAACA 60.668 50.000 29.95 8.79 0.00 3.33
2263 2338 0.247145 GATTAACCGCGCGTCAACAG 60.247 55.000 29.95 14.69 0.00 3.16
2264 2339 0.668096 ATTAACCGCGCGTCAACAGA 60.668 50.000 29.95 7.95 0.00 3.41
2265 2340 0.668096 TTAACCGCGCGTCAACAGAT 60.668 50.000 29.95 9.28 0.00 2.90
2266 2341 0.668096 TAACCGCGCGTCAACAGATT 60.668 50.000 29.95 11.32 0.00 2.40
2267 2342 1.503818 AACCGCGCGTCAACAGATTT 61.504 50.000 29.95 4.20 0.00 2.17
2268 2343 0.668096 ACCGCGCGTCAACAGATTTA 60.668 50.000 29.95 0.00 0.00 1.40
2269 2344 0.440758 CCGCGCGTCAACAGATTTAA 59.559 50.000 29.95 0.00 0.00 1.52
2270 2345 1.136197 CCGCGCGTCAACAGATTTAAA 60.136 47.619 29.95 0.00 0.00 1.52
2271 2346 2.566036 CGCGCGTCAACAGATTTAAAA 58.434 42.857 24.19 0.00 0.00 1.52
2272 2347 2.334454 CGCGCGTCAACAGATTTAAAAC 59.666 45.455 24.19 0.00 0.00 2.43
2273 2348 3.551551 GCGCGTCAACAGATTTAAAACT 58.448 40.909 8.43 0.00 0.00 2.66
2274 2349 3.357823 GCGCGTCAACAGATTTAAAACTG 59.642 43.478 20.37 20.37 39.65 3.16
2279 2354 6.303259 GCGTCAACAGATTTAAAACTGTCATC 59.697 38.462 25.67 18.01 44.94 2.92
2301 2376 8.576442 TCATCAAGAAGGGATTTTTAGTTTCAC 58.424 33.333 0.00 0.00 0.00 3.18
2311 2386 9.556030 GGGATTTTTAGTTTCACTAGAATTTCG 57.444 33.333 0.00 0.00 31.47 3.46
2389 2464 7.953005 ATATTTCATCCATTACAACACACCA 57.047 32.000 0.00 0.00 0.00 4.17
2455 2608 7.436673 GCTACGACTGAGATATTTCTGAAACAT 59.563 37.037 4.73 0.00 30.30 2.71
2474 2627 9.217278 TGAAACATAAATCCAAAACCAATCATG 57.783 29.630 0.00 0.00 0.00 3.07
2482 2635 4.097741 TCCAAAACCAATCATGATTAGCCG 59.902 41.667 20.32 8.39 0.00 5.52
2537 2690 9.965902 ATATTATTATCTTCCCATGTCCAGTTC 57.034 33.333 0.00 0.00 0.00 3.01
2556 2714 4.062293 GTTCTTTTTGGGCGGCTTAAAAT 58.938 39.130 19.25 0.00 0.00 1.82
2562 2720 3.172229 TGGGCGGCTTAAAATTTATGC 57.828 42.857 9.56 13.24 0.00 3.14
2573 2731 6.595326 GCTTAAAATTTATGCTGCCTTTCCTT 59.405 34.615 14.06 0.00 0.00 3.36
2663 2822 9.020731 GTTTAGAAACCCCAATGAATAAGAGAA 57.979 33.333 0.00 0.00 32.82 2.87
2703 2862 1.144276 GGAGGAGGCGGCTTACTTC 59.856 63.158 14.76 10.13 0.00 3.01
2778 2937 7.918076 ACATCCTAATGTAAAGTTGAGGAAGA 58.082 34.615 0.00 0.00 44.38 2.87
2858 3017 3.192541 ACATGCATAGCGGTCATTGTA 57.807 42.857 0.00 0.00 0.00 2.41
2941 3100 6.867662 AATACATAAGAGCGAAATGAAGGG 57.132 37.500 0.00 0.00 0.00 3.95
2990 3161 5.109903 GTTGATGTCGCAGGAAGTAGTATT 58.890 41.667 0.00 0.00 0.00 1.89
3014 3185 6.038997 AGTTACTAAGTGACTCATGGGAAC 57.961 41.667 0.00 0.00 25.58 3.62
3018 3189 6.038997 ACTAAGTGACTCATGGGAACTTAC 57.961 41.667 16.62 2.72 33.37 2.34
3024 3195 6.098409 AGTGACTCATGGGAACTTACGATATT 59.902 38.462 0.00 0.00 0.00 1.28
3055 3226 7.520119 TGCATGTTCATCTTAGTTAGTTACG 57.480 36.000 0.00 0.00 0.00 3.18
3154 3330 0.465460 GCCCCACTGTGTTTGTCTCA 60.465 55.000 7.08 0.00 0.00 3.27
3365 3544 2.839486 TACAGCTTTCTCACCACCTG 57.161 50.000 0.00 0.00 0.00 4.00
3402 3581 3.756434 TCAGTTTTTATGTAGGTGCCTGC 59.244 43.478 0.12 0.00 0.00 4.85
3406 3585 4.577988 TTTTATGTAGGTGCCTGCCTAA 57.422 40.909 0.12 0.86 42.22 2.69
3434 3614 5.667539 TGATGGATAGTGCTATAGGCTTC 57.332 43.478 1.04 0.00 42.39 3.86
3452 3632 6.543735 AGGCTTCTGAATATATGGGTTAACC 58.456 40.000 16.85 16.85 40.81 2.85
3462 3642 1.061546 TGGGTTAACCACCTCCAGTC 58.938 55.000 25.71 5.93 46.80 3.51
3497 3677 8.947055 AAATCTTACAACTTGCATTGTCTTTT 57.053 26.923 8.91 3.76 41.89 2.27
3528 3708 3.798337 GGTCACAACTTGCATTGTCAAAG 59.202 43.478 2.67 0.00 40.89 2.77
3842 4057 9.890629 ACTCAGAATAATATCTGCAACAAGTTA 57.109 29.630 0.00 0.00 45.21 2.24
3871 4086 7.666804 TGCTCATAAATTACAGCATATGACCAT 59.333 33.333 6.97 0.00 36.96 3.55
3929 4145 0.449388 CCGCCTCTTGCAAATCTGTC 59.551 55.000 0.00 0.00 41.33 3.51
3940 4156 0.912487 AAATCTGTCGGTGGGCCCTA 60.912 55.000 25.70 6.58 0.00 3.53
3949 4165 3.751018 TGGGCCCTAGCGAGAGGA 61.751 66.667 25.70 0.00 39.15 3.71
3950 4166 2.915137 GGGCCCTAGCGAGAGGAG 60.915 72.222 17.04 0.00 39.15 3.69
3951 4167 2.915137 GGCCCTAGCGAGAGGAGG 60.915 72.222 4.67 0.00 39.15 4.30
3952 4168 2.123640 GCCCTAGCGAGAGGAGGT 60.124 66.667 4.67 0.00 39.15 3.85
3953 4169 2.197605 GCCCTAGCGAGAGGAGGTC 61.198 68.421 4.67 0.00 39.15 3.85
3954 4170 1.227664 CCCTAGCGAGAGGAGGTCA 59.772 63.158 4.67 0.00 39.15 4.02
3955 4171 1.104577 CCCTAGCGAGAGGAGGTCAC 61.105 65.000 4.67 0.00 39.15 3.67
3956 4172 1.440938 CCTAGCGAGAGGAGGTCACG 61.441 65.000 0.00 0.00 41.70 4.35
3957 4173 0.462225 CTAGCGAGAGGAGGTCACGA 60.462 60.000 0.00 0.00 41.34 4.35
3958 4174 0.743701 TAGCGAGAGGAGGTCACGAC 60.744 60.000 0.00 0.00 41.34 4.34
3959 4175 2.041686 GCGAGAGGAGGTCACGACT 61.042 63.158 0.00 0.00 41.34 4.18
3960 4176 1.587933 GCGAGAGGAGGTCACGACTT 61.588 60.000 0.00 0.00 41.34 3.01
3961 4177 0.448593 CGAGAGGAGGTCACGACTTC 59.551 60.000 0.88 0.88 41.34 3.01
3962 4178 0.448593 GAGAGGAGGTCACGACTTCG 59.551 60.000 3.55 0.00 46.33 3.79
3963 4179 0.961358 AGAGGAGGTCACGACTTCGG 60.961 60.000 3.30 0.00 44.95 4.30
3964 4180 1.228490 AGGAGGTCACGACTTCGGT 60.228 57.895 3.30 0.00 44.95 4.69
3965 4181 1.212229 GGAGGTCACGACTTCGGTC 59.788 63.158 3.30 0.00 44.95 4.79
3966 4182 1.242665 GGAGGTCACGACTTCGGTCT 61.243 60.000 3.30 0.00 44.95 3.85
3967 4183 0.168568 GAGGTCACGACTTCGGTCTC 59.831 60.000 3.30 1.22 44.95 3.36
3968 4184 1.212229 GGTCACGACTTCGGTCTCC 59.788 63.158 3.30 0.00 44.95 3.71
3969 4185 1.521450 GGTCACGACTTCGGTCTCCA 61.521 60.000 3.30 0.00 44.95 3.86
3970 4186 0.386985 GTCACGACTTCGGTCTCCAC 60.387 60.000 3.30 0.00 44.95 4.02
3971 4187 1.080705 CACGACTTCGGTCTCCACC 60.081 63.158 3.30 0.00 44.95 4.61
3972 4188 2.273912 ACGACTTCGGTCTCCACCC 61.274 63.158 3.30 0.00 44.95 4.61
3973 4189 2.273179 CGACTTCGGTCTCCACCCA 61.273 63.158 0.00 0.00 42.42 4.51
3974 4190 1.812686 CGACTTCGGTCTCCACCCAA 61.813 60.000 0.00 0.00 42.42 4.12
3975 4191 0.320508 GACTTCGGTCTCCACCCAAC 60.321 60.000 0.00 0.00 40.01 3.77
3976 4192 1.003718 CTTCGGTCTCCACCCAACC 60.004 63.158 0.00 0.00 40.01 3.77
3977 4193 1.460689 TTCGGTCTCCACCCAACCT 60.461 57.895 0.00 0.00 40.01 3.50
3978 4194 1.764571 TTCGGTCTCCACCCAACCTG 61.765 60.000 0.00 0.00 40.01 4.00
3979 4195 2.757077 GGTCTCCACCCAACCTGG 59.243 66.667 0.00 0.00 36.54 4.45
3980 4196 1.846124 GGTCTCCACCCAACCTGGA 60.846 63.158 0.00 0.00 40.96 3.86
3981 4197 1.423794 GGTCTCCACCCAACCTGGAA 61.424 60.000 0.00 0.00 40.96 3.53
3982 4198 0.036875 GTCTCCACCCAACCTGGAAG 59.963 60.000 0.00 0.00 40.96 3.46
3993 4209 3.160585 CTGGAAGGCAGGGTGACA 58.839 61.111 0.00 0.00 0.00 3.58
3994 4210 1.455849 CTGGAAGGCAGGGTGACAA 59.544 57.895 0.00 0.00 0.00 3.18
3995 4211 0.607489 CTGGAAGGCAGGGTGACAAG 60.607 60.000 0.00 0.00 0.00 3.16
3996 4212 1.973812 GGAAGGCAGGGTGACAAGC 60.974 63.158 0.00 0.00 0.00 4.01
3997 4213 1.228245 GAAGGCAGGGTGACAAGCA 60.228 57.895 0.00 0.00 33.82 3.91
3998 4214 0.823356 GAAGGCAGGGTGACAAGCAA 60.823 55.000 0.00 0.00 33.82 3.91
3999 4215 0.825010 AAGGCAGGGTGACAAGCAAG 60.825 55.000 0.00 0.00 33.82 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.324383 GCCCTCCCACGAAAGAAAAA 58.676 50.000 0.00 0.00 0.00 1.94
31 32 0.183971 TGCCCTCCCACGAAAGAAAA 59.816 50.000 0.00 0.00 0.00 2.29
32 33 0.536460 GTGCCCTCCCACGAAAGAAA 60.536 55.000 0.00 0.00 0.00 2.52
33 34 1.072505 GTGCCCTCCCACGAAAGAA 59.927 57.895 0.00 0.00 0.00 2.52
34 35 2.747686 GTGCCCTCCCACGAAAGA 59.252 61.111 0.00 0.00 0.00 2.52
40 41 2.203437 AAAACCGTGCCCTCCCAC 60.203 61.111 0.00 0.00 0.00 4.61
41 42 2.203422 CAAAACCGTGCCCTCCCA 60.203 61.111 0.00 0.00 0.00 4.37
42 43 3.680786 GCAAAACCGTGCCCTCCC 61.681 66.667 0.00 0.00 38.66 4.30
43 44 2.142357 GAAGCAAAACCGTGCCCTCC 62.142 60.000 0.00 0.00 46.14 4.30
44 45 1.285950 GAAGCAAAACCGTGCCCTC 59.714 57.895 0.00 0.00 46.14 4.30
45 46 2.200337 GGAAGCAAAACCGTGCCCT 61.200 57.895 0.00 0.00 46.14 5.19
46 47 2.338620 GGAAGCAAAACCGTGCCC 59.661 61.111 0.00 0.00 46.14 5.36
47 48 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
59 60 2.817423 GCAATGCCTCTCGCGGAAG 61.817 63.158 6.13 3.71 42.08 3.46
60 61 2.819595 GCAATGCCTCTCGCGGAA 60.820 61.111 6.13 0.00 42.08 4.30
61 62 4.081185 TGCAATGCCTCTCGCGGA 62.081 61.111 6.13 1.01 42.08 5.54
62 63 2.906182 TACTGCAATGCCTCTCGCGG 62.906 60.000 6.13 0.00 42.08 6.46
63 64 1.519234 TACTGCAATGCCTCTCGCG 60.519 57.895 1.53 0.00 42.08 5.87
64 65 1.432270 GGTACTGCAATGCCTCTCGC 61.432 60.000 1.53 0.00 38.31 5.03
65 66 0.176680 AGGTACTGCAATGCCTCTCG 59.823 55.000 0.00 0.00 37.18 4.04
66 67 1.946745 GAGGTACTGCAATGCCTCTC 58.053 55.000 22.96 0.32 45.37 3.20
69 70 1.340405 CCAAGAGGTACTGCAATGCCT 60.340 52.381 3.85 3.85 41.55 4.75
70 71 1.098050 CCAAGAGGTACTGCAATGCC 58.902 55.000 1.53 0.00 41.55 4.40
71 72 2.113860 TCCAAGAGGTACTGCAATGC 57.886 50.000 0.00 0.00 41.55 3.56
72 73 3.120199 CGTTTCCAAGAGGTACTGCAATG 60.120 47.826 0.00 0.00 41.55 2.82
73 74 3.074412 CGTTTCCAAGAGGTACTGCAAT 58.926 45.455 0.00 0.00 41.55 3.56
74 75 2.489971 CGTTTCCAAGAGGTACTGCAA 58.510 47.619 0.00 0.00 41.55 4.08
75 76 1.270625 CCGTTTCCAAGAGGTACTGCA 60.271 52.381 0.00 0.00 41.55 4.41
76 77 1.001633 TCCGTTTCCAAGAGGTACTGC 59.998 52.381 0.00 0.00 41.55 4.40
77 78 3.396260 TTCCGTTTCCAAGAGGTACTG 57.604 47.619 0.00 0.00 41.55 2.74
99 100 4.123497 AGCAAAGAAAAAGAACGCCTTT 57.877 36.364 0.00 0.00 46.47 3.11
100 101 3.801114 AGCAAAGAAAAAGAACGCCTT 57.199 38.095 0.00 0.00 36.47 4.35
101 102 3.801114 AAGCAAAGAAAAAGAACGCCT 57.199 38.095 0.00 0.00 0.00 5.52
102 103 3.061205 CGAAAGCAAAGAAAAAGAACGCC 60.061 43.478 0.00 0.00 0.00 5.68
103 104 3.546271 ACGAAAGCAAAGAAAAAGAACGC 59.454 39.130 0.00 0.00 0.00 4.84
104 105 4.791163 TCACGAAAGCAAAGAAAAAGAACG 59.209 37.500 0.00 0.00 0.00 3.95
105 106 6.027749 TCTCACGAAAGCAAAGAAAAAGAAC 58.972 36.000 0.00 0.00 0.00 3.01
106 107 6.189677 TCTCACGAAAGCAAAGAAAAAGAA 57.810 33.333 0.00 0.00 0.00 2.52
107 108 5.811399 TCTCACGAAAGCAAAGAAAAAGA 57.189 34.783 0.00 0.00 0.00 2.52
108 109 5.108103 GCATCTCACGAAAGCAAAGAAAAAG 60.108 40.000 0.00 0.00 0.00 2.27
109 110 4.739716 GCATCTCACGAAAGCAAAGAAAAA 59.260 37.500 0.00 0.00 0.00 1.94
110 111 4.202000 TGCATCTCACGAAAGCAAAGAAAA 60.202 37.500 0.00 0.00 33.25 2.29
111 112 3.314913 TGCATCTCACGAAAGCAAAGAAA 59.685 39.130 0.00 0.00 33.25 2.52
112 113 2.877786 TGCATCTCACGAAAGCAAAGAA 59.122 40.909 0.00 0.00 33.25 2.52
113 114 2.224079 GTGCATCTCACGAAAGCAAAGA 59.776 45.455 0.00 0.00 36.46 2.52
114 115 2.578495 GTGCATCTCACGAAAGCAAAG 58.422 47.619 0.00 0.00 36.46 2.77
115 116 2.686558 GTGCATCTCACGAAAGCAAA 57.313 45.000 0.00 0.00 36.46 3.68
124 125 3.120060 AGAAGCAAAATCGTGCATCTCAC 60.120 43.478 0.00 0.00 46.66 3.51
125 126 3.076621 AGAAGCAAAATCGTGCATCTCA 58.923 40.909 0.00 0.00 46.66 3.27
126 127 3.423571 CAGAAGCAAAATCGTGCATCTC 58.576 45.455 2.19 0.00 46.66 2.75
131 132 0.110238 TCGCAGAAGCAAAATCGTGC 60.110 50.000 0.00 0.00 45.28 5.34
132 133 1.460743 TCTCGCAGAAGCAAAATCGTG 59.539 47.619 0.00 0.00 42.27 4.35
133 134 1.728971 CTCTCGCAGAAGCAAAATCGT 59.271 47.619 0.00 0.00 42.27 3.73
134 135 1.061711 CCTCTCGCAGAAGCAAAATCG 59.938 52.381 0.00 0.00 42.27 3.34
135 136 1.202121 GCCTCTCGCAGAAGCAAAATC 60.202 52.381 2.95 0.00 42.27 2.17
136 137 0.807496 GCCTCTCGCAGAAGCAAAAT 59.193 50.000 2.95 0.00 42.27 1.82
137 138 0.534877 TGCCTCTCGCAGAAGCAAAA 60.535 50.000 6.89 0.00 44.64 2.44
138 139 1.071299 TGCCTCTCGCAGAAGCAAA 59.929 52.632 6.89 0.00 44.64 3.68
139 140 2.743060 TGCCTCTCGCAGAAGCAA 59.257 55.556 6.89 0.00 44.64 3.91
164 165 2.587194 CCATGCCTCTCGCGGAAG 60.587 66.667 6.13 3.71 42.08 3.46
165 166 4.838152 GCCATGCCTCTCGCGGAA 62.838 66.667 6.13 0.00 42.08 4.30
188 189 5.077424 CGTTTATTTTTCCGTTTCCGAGAG 58.923 41.667 0.00 0.00 35.63 3.20
189 190 4.511082 ACGTTTATTTTTCCGTTTCCGAGA 59.489 37.500 0.00 0.00 35.63 4.04
190 191 4.609708 CACGTTTATTTTTCCGTTTCCGAG 59.390 41.667 0.00 0.00 35.63 4.63
191 192 4.034975 ACACGTTTATTTTTCCGTTTCCGA 59.965 37.500 0.00 0.00 35.63 4.55
192 193 4.281264 ACACGTTTATTTTTCCGTTTCCG 58.719 39.130 0.00 0.00 0.00 4.30
193 194 6.572153 AAACACGTTTATTTTTCCGTTTCC 57.428 33.333 0.00 0.00 0.00 3.13
194 195 7.112397 GGAAAACACGTTTATTTTTCCGTTTC 58.888 34.615 17.90 3.96 45.03 2.78
195 196 6.991655 GGAAAACACGTTTATTTTTCCGTTT 58.008 32.000 17.90 6.23 45.03 3.60
196 197 6.572153 GGAAAACACGTTTATTTTTCCGTT 57.428 33.333 17.90 1.09 45.03 4.44
221 222 8.149973 AGAATCGAAGCTAACACTTGTAAAAA 57.850 30.769 0.00 0.00 0.00 1.94
222 223 7.724305 AGAATCGAAGCTAACACTTGTAAAA 57.276 32.000 0.00 0.00 0.00 1.52
223 224 7.656137 AGAAGAATCGAAGCTAACACTTGTAAA 59.344 33.333 0.00 0.00 0.00 2.01
224 225 7.152645 AGAAGAATCGAAGCTAACACTTGTAA 58.847 34.615 0.00 0.00 0.00 2.41
225 226 6.688578 AGAAGAATCGAAGCTAACACTTGTA 58.311 36.000 0.00 0.00 0.00 2.41
226 227 5.542779 AGAAGAATCGAAGCTAACACTTGT 58.457 37.500 0.00 0.00 0.00 3.16
227 228 6.586463 TGTAGAAGAATCGAAGCTAACACTTG 59.414 38.462 0.00 0.00 0.00 3.16
228 229 6.688578 TGTAGAAGAATCGAAGCTAACACTT 58.311 36.000 0.00 0.00 0.00 3.16
229 230 6.268825 TGTAGAAGAATCGAAGCTAACACT 57.731 37.500 0.00 0.00 0.00 3.55
230 231 6.946229 TTGTAGAAGAATCGAAGCTAACAC 57.054 37.500 0.00 0.00 0.00 3.32
231 232 7.152645 AGTTTGTAGAAGAATCGAAGCTAACA 58.847 34.615 0.00 0.00 0.00 2.41
232 233 7.461677 CGAGTTTGTAGAAGAATCGAAGCTAAC 60.462 40.741 0.00 0.00 0.00 2.34
233 234 6.527023 CGAGTTTGTAGAAGAATCGAAGCTAA 59.473 38.462 0.00 0.00 0.00 3.09
234 235 6.028368 CGAGTTTGTAGAAGAATCGAAGCTA 58.972 40.000 0.00 0.00 0.00 3.32
235 236 4.859798 CGAGTTTGTAGAAGAATCGAAGCT 59.140 41.667 0.00 0.00 0.00 3.74
236 237 4.621886 ACGAGTTTGTAGAAGAATCGAAGC 59.378 41.667 10.02 0.00 33.23 3.86
237 238 7.022384 AGTACGAGTTTGTAGAAGAATCGAAG 58.978 38.462 10.02 0.00 33.23 3.79
238 239 6.906659 AGTACGAGTTTGTAGAAGAATCGAA 58.093 36.000 10.02 0.00 33.23 3.71
239 240 6.148315 TGAGTACGAGTTTGTAGAAGAATCGA 59.852 38.462 10.02 0.00 33.23 3.59
240 241 6.248839 GTGAGTACGAGTTTGTAGAAGAATCG 59.751 42.308 0.00 0.00 35.00 3.34
241 242 7.306953 AGTGAGTACGAGTTTGTAGAAGAATC 58.693 38.462 0.00 0.00 0.00 2.52
242 243 7.216973 AGTGAGTACGAGTTTGTAGAAGAAT 57.783 36.000 0.00 0.00 0.00 2.40
243 244 6.293845 GGAGTGAGTACGAGTTTGTAGAAGAA 60.294 42.308 0.00 0.00 0.00 2.52
244 245 5.180868 GGAGTGAGTACGAGTTTGTAGAAGA 59.819 44.000 0.00 0.00 0.00 2.87
245 246 5.392286 GGAGTGAGTACGAGTTTGTAGAAG 58.608 45.833 0.00 0.00 0.00 2.85
246 247 4.083643 CGGAGTGAGTACGAGTTTGTAGAA 60.084 45.833 0.00 0.00 0.00 2.10
247 248 3.434641 CGGAGTGAGTACGAGTTTGTAGA 59.565 47.826 0.00 0.00 0.00 2.59
248 249 3.188048 ACGGAGTGAGTACGAGTTTGTAG 59.812 47.826 0.00 0.00 42.51 2.74
249 250 3.141398 ACGGAGTGAGTACGAGTTTGTA 58.859 45.455 0.00 0.00 42.51 2.41
250 251 1.952296 ACGGAGTGAGTACGAGTTTGT 59.048 47.619 0.00 0.00 42.51 2.83
251 252 2.701073 ACGGAGTGAGTACGAGTTTG 57.299 50.000 0.00 0.00 42.51 2.93
252 253 2.883386 AGAACGGAGTGAGTACGAGTTT 59.117 45.455 0.00 0.00 45.00 2.66
253 254 2.502295 AGAACGGAGTGAGTACGAGTT 58.498 47.619 0.00 0.00 45.00 3.01
254 255 2.181954 AGAACGGAGTGAGTACGAGT 57.818 50.000 0.00 0.00 45.00 4.18
255 256 4.879104 AATAGAACGGAGTGAGTACGAG 57.121 45.455 0.00 0.00 45.00 4.18
256 257 4.673580 GCAAATAGAACGGAGTGAGTACGA 60.674 45.833 0.00 0.00 45.00 3.43
257 258 3.546670 GCAAATAGAACGGAGTGAGTACG 59.453 47.826 0.00 0.00 45.00 3.67
258 259 4.745649 AGCAAATAGAACGGAGTGAGTAC 58.254 43.478 0.00 0.00 45.00 2.73
259 260 4.142227 GGAGCAAATAGAACGGAGTGAGTA 60.142 45.833 0.00 0.00 45.00 2.59
260 261 3.368531 GGAGCAAATAGAACGGAGTGAGT 60.369 47.826 0.00 0.00 45.00 3.41
261 262 3.190874 GGAGCAAATAGAACGGAGTGAG 58.809 50.000 0.00 0.00 45.00 3.51
262 263 2.565391 TGGAGCAAATAGAACGGAGTGA 59.435 45.455 0.00 0.00 45.00 3.41
263 264 2.673368 GTGGAGCAAATAGAACGGAGTG 59.327 50.000 0.00 0.00 45.00 3.51
265 266 2.972625 TGTGGAGCAAATAGAACGGAG 58.027 47.619 0.00 0.00 0.00 4.63
266 267 3.627395 ATGTGGAGCAAATAGAACGGA 57.373 42.857 0.00 0.00 0.00 4.69
267 268 4.816385 ACATATGTGGAGCAAATAGAACGG 59.184 41.667 7.78 0.00 0.00 4.44
268 269 5.991328 ACATATGTGGAGCAAATAGAACG 57.009 39.130 7.78 0.00 0.00 3.95
269 270 7.227512 AGCTAACATATGTGGAGCAAATAGAAC 59.772 37.037 30.31 9.59 39.54 3.01
270 271 7.282585 AGCTAACATATGTGGAGCAAATAGAA 58.717 34.615 30.31 0.00 39.54 2.10
271 272 6.830912 AGCTAACATATGTGGAGCAAATAGA 58.169 36.000 30.31 0.00 39.54 1.98
272 273 7.502120 AAGCTAACATATGTGGAGCAAATAG 57.498 36.000 30.31 18.41 39.54 1.73
273 274 7.339212 ACAAAGCTAACATATGTGGAGCAAATA 59.661 33.333 30.31 11.01 39.54 1.40
274 275 6.153340 ACAAAGCTAACATATGTGGAGCAAAT 59.847 34.615 30.31 19.56 39.54 2.32
275 276 5.476599 ACAAAGCTAACATATGTGGAGCAAA 59.523 36.000 30.31 6.56 39.54 3.68
276 277 5.009631 ACAAAGCTAACATATGTGGAGCAA 58.990 37.500 30.31 7.91 39.54 3.91
277 278 4.588899 ACAAAGCTAACATATGTGGAGCA 58.411 39.130 30.31 9.02 39.54 4.26
278 279 4.878397 AGACAAAGCTAACATATGTGGAGC 59.122 41.667 25.31 25.31 38.19 4.70
279 280 8.492673 TTTAGACAAAGCTAACATATGTGGAG 57.507 34.615 9.63 11.02 30.53 3.86
280 281 8.100791 ACTTTAGACAAAGCTAACATATGTGGA 58.899 33.333 9.63 0.00 44.27 4.02
281 282 8.268850 ACTTTAGACAAAGCTAACATATGTGG 57.731 34.615 9.63 6.91 44.27 4.17
282 283 8.935844 TGACTTTAGACAAAGCTAACATATGTG 58.064 33.333 9.63 0.00 44.27 3.21
283 284 9.502091 TTGACTTTAGACAAAGCTAACATATGT 57.498 29.630 1.41 1.41 44.27 2.29
284 285 9.760660 GTTGACTTTAGACAAAGCTAACATATG 57.239 33.333 0.00 0.00 44.27 1.78
285 286 9.726438 AGTTGACTTTAGACAAAGCTAACATAT 57.274 29.630 14.25 0.00 44.27 1.78
287 288 9.726438 ATAGTTGACTTTAGACAAAGCTAACAT 57.274 29.630 14.25 7.38 44.27 2.71
347 348 9.661563 GGTATCGATTTGGTATTCCATATGTTA 57.338 33.333 1.71 0.00 43.91 2.41
348 349 8.160765 TGGTATCGATTTGGTATTCCATATGTT 58.839 33.333 1.71 0.00 43.91 2.71
349 350 7.685481 TGGTATCGATTTGGTATTCCATATGT 58.315 34.615 1.71 0.00 43.91 2.29
350 351 8.737168 ATGGTATCGATTTGGTATTCCATATG 57.263 34.615 1.71 0.00 43.91 1.78
351 352 9.177608 CAATGGTATCGATTTGGTATTCCATAT 57.822 33.333 1.71 0.00 43.91 1.78
352 353 7.609918 CCAATGGTATCGATTTGGTATTCCATA 59.390 37.037 15.56 0.00 43.91 2.74
353 354 6.434028 CCAATGGTATCGATTTGGTATTCCAT 59.566 38.462 15.56 9.15 43.91 3.41
354 355 5.767665 CCAATGGTATCGATTTGGTATTCCA 59.232 40.000 15.56 7.65 42.66 3.53
355 356 6.001460 TCCAATGGTATCGATTTGGTATTCC 58.999 40.000 20.67 6.22 39.67 3.01
356 357 7.687941 ATCCAATGGTATCGATTTGGTATTC 57.312 36.000 20.67 0.00 39.67 1.75
357 358 7.723616 TGAATCCAATGGTATCGATTTGGTATT 59.276 33.333 20.67 18.05 39.67 1.89
358 359 7.230747 TGAATCCAATGGTATCGATTTGGTAT 58.769 34.615 20.67 13.39 39.67 2.73
359 360 6.596621 TGAATCCAATGGTATCGATTTGGTA 58.403 36.000 20.67 11.54 39.67 3.25
360 361 5.445069 TGAATCCAATGGTATCGATTTGGT 58.555 37.500 20.67 7.64 39.67 3.67
361 362 6.579666 ATGAATCCAATGGTATCGATTTGG 57.420 37.500 17.09 17.09 39.98 3.28
364 365 9.519191 TGAATAATGAATCCAATGGTATCGATT 57.481 29.630 1.71 5.05 0.00 3.34
365 366 9.519191 TTGAATAATGAATCCAATGGTATCGAT 57.481 29.630 2.16 2.16 0.00 3.59
366 367 8.916628 TTGAATAATGAATCCAATGGTATCGA 57.083 30.769 0.00 0.00 0.00 3.59
395 396 9.612066 AAAAACAAATCTGTATGGTGTGAAAAT 57.388 25.926 0.00 0.00 33.45 1.82
396 397 8.877779 CAAAAACAAATCTGTATGGTGTGAAAA 58.122 29.630 0.00 0.00 33.45 2.29
397 398 8.037758 ACAAAAACAAATCTGTATGGTGTGAAA 58.962 29.630 0.00 0.00 33.45 2.69
398 399 7.551585 ACAAAAACAAATCTGTATGGTGTGAA 58.448 30.769 0.00 0.00 33.45 3.18
399 400 7.106439 ACAAAAACAAATCTGTATGGTGTGA 57.894 32.000 0.00 0.00 33.45 3.58
400 401 8.864069 TTACAAAAACAAATCTGTATGGTGTG 57.136 30.769 0.00 0.00 33.45 3.82
434 435 9.520515 AAGTTGGACAAGTTTATAGATGTCAAT 57.479 29.630 7.03 0.00 43.02 2.57
435 436 8.918202 AAGTTGGACAAGTTTATAGATGTCAA 57.082 30.769 7.03 0.00 43.02 3.18
436 437 8.918202 AAAGTTGGACAAGTTTATAGATGTCA 57.082 30.769 14.37 0.00 43.02 3.58
448 449 9.961265 GCTAAAAGTTTATAAAGTTGGACAAGT 57.039 29.630 17.05 0.00 32.20 3.16
449 450 9.959749 TGCTAAAAGTTTATAAAGTTGGACAAG 57.040 29.630 17.05 11.54 32.20 3.16
453 454 9.471084 GCTTTGCTAAAAGTTTATAAAGTTGGA 57.529 29.630 17.05 8.71 44.02 3.53
454 455 9.476202 AGCTTTGCTAAAAGTTTATAAAGTTGG 57.524 29.630 17.05 11.94 44.02 3.77
456 457 9.692749 GGAGCTTTGCTAAAAGTTTATAAAGTT 57.307 29.630 11.73 11.73 44.02 2.66
457 458 8.304596 GGGAGCTTTGCTAAAAGTTTATAAAGT 58.695 33.333 0.00 0.00 44.02 2.66
458 459 8.523658 AGGGAGCTTTGCTAAAAGTTTATAAAG 58.476 33.333 0.00 12.09 44.02 1.85
459 460 8.417273 AGGGAGCTTTGCTAAAAGTTTATAAA 57.583 30.769 0.00 0.00 44.02 1.40
460 461 7.888546 AGAGGGAGCTTTGCTAAAAGTTTATAA 59.111 33.333 0.00 0.00 44.02 0.98
461 462 7.336931 CAGAGGGAGCTTTGCTAAAAGTTTATA 59.663 37.037 0.00 0.00 44.02 0.98
462 463 6.151817 CAGAGGGAGCTTTGCTAAAAGTTTAT 59.848 38.462 0.00 0.00 44.02 1.40
463 464 5.473504 CAGAGGGAGCTTTGCTAAAAGTTTA 59.526 40.000 0.00 0.00 44.02 2.01
464 465 4.279420 CAGAGGGAGCTTTGCTAAAAGTTT 59.721 41.667 0.00 0.00 44.02 2.66
465 466 3.823304 CAGAGGGAGCTTTGCTAAAAGTT 59.177 43.478 0.00 0.00 44.02 2.66
466 467 3.181439 ACAGAGGGAGCTTTGCTAAAAGT 60.181 43.478 0.00 0.00 44.02 2.66
467 468 3.416156 ACAGAGGGAGCTTTGCTAAAAG 58.584 45.455 0.00 0.00 44.81 2.27
468 469 3.508845 ACAGAGGGAGCTTTGCTAAAA 57.491 42.857 0.00 0.00 39.88 1.52
469 470 3.508845 AACAGAGGGAGCTTTGCTAAA 57.491 42.857 0.00 0.00 39.88 1.85
470 471 3.508845 AAACAGAGGGAGCTTTGCTAA 57.491 42.857 0.00 0.00 39.88 3.09
471 472 3.508845 AAAACAGAGGGAGCTTTGCTA 57.491 42.857 0.00 0.00 39.88 3.49
472 473 2.371658 AAAACAGAGGGAGCTTTGCT 57.628 45.000 0.00 0.00 43.88 3.91
473 474 4.790765 ATAAAAACAGAGGGAGCTTTGC 57.209 40.909 0.00 0.00 0.00 3.68
474 475 7.886338 AGTAAATAAAAACAGAGGGAGCTTTG 58.114 34.615 0.00 0.00 0.00 2.77
475 476 7.176865 GGAGTAAATAAAAACAGAGGGAGCTTT 59.823 37.037 0.00 0.00 0.00 3.51
476 477 6.659668 GGAGTAAATAAAAACAGAGGGAGCTT 59.340 38.462 0.00 0.00 0.00 3.74
477 478 6.181190 GGAGTAAATAAAAACAGAGGGAGCT 58.819 40.000 0.00 0.00 0.00 4.09
478 479 5.944007 TGGAGTAAATAAAAACAGAGGGAGC 59.056 40.000 0.00 0.00 0.00 4.70
479 480 6.940298 TGTGGAGTAAATAAAAACAGAGGGAG 59.060 38.462 0.00 0.00 0.00 4.30
480 481 6.843752 TGTGGAGTAAATAAAAACAGAGGGA 58.156 36.000 0.00 0.00 0.00 4.20
481 482 7.703058 ATGTGGAGTAAATAAAAACAGAGGG 57.297 36.000 0.00 0.00 0.00 4.30
493 494 9.113838 CAGACAAAGCTAATATGTGGAGTAAAT 57.886 33.333 0.00 0.00 0.00 1.40
494 495 8.318412 TCAGACAAAGCTAATATGTGGAGTAAA 58.682 33.333 0.00 0.00 0.00 2.01
495 496 7.847096 TCAGACAAAGCTAATATGTGGAGTAA 58.153 34.615 0.00 0.00 0.00 2.24
496 497 7.418337 TCAGACAAAGCTAATATGTGGAGTA 57.582 36.000 0.00 0.00 0.00 2.59
497 498 6.299805 TCAGACAAAGCTAATATGTGGAGT 57.700 37.500 0.00 0.00 0.00 3.85
498 499 6.820656 ACTTCAGACAAAGCTAATATGTGGAG 59.179 38.462 0.00 0.00 0.00 3.86
499 500 6.711277 ACTTCAGACAAAGCTAATATGTGGA 58.289 36.000 0.00 0.00 0.00 4.02
500 501 6.992063 ACTTCAGACAAAGCTAATATGTGG 57.008 37.500 0.00 0.00 0.00 4.17
543 544 9.801873 TGCCAATAGTTTTCTCTATAAATTTGC 57.198 29.630 0.00 0.00 31.37 3.68
555 556 9.860650 TGGTATTGTATATGCCAATAGTTTTCT 57.139 29.630 8.93 0.00 35.92 2.52
560 561 9.806448 TGATTTGGTATTGTATATGCCAATAGT 57.194 29.630 7.90 0.00 42.00 2.12
687 688 6.628636 CGCGTATTAGCTTTGACTGAAGTCA 61.629 44.000 9.08 9.08 43.05 3.41
688 689 4.259451 CGCGTATTAGCTTTGACTGAAGTC 60.259 45.833 0.00 3.41 39.09 3.01
689 690 3.612860 CGCGTATTAGCTTTGACTGAAGT 59.387 43.478 0.00 0.00 34.40 3.01
690 691 3.000322 CCGCGTATTAGCTTTGACTGAAG 60.000 47.826 4.92 0.00 34.40 3.02
691 692 2.927477 CCGCGTATTAGCTTTGACTGAA 59.073 45.455 4.92 0.00 34.40 3.02
692 693 2.164827 TCCGCGTATTAGCTTTGACTGA 59.835 45.455 4.92 0.00 34.40 3.41
693 694 2.535984 CTCCGCGTATTAGCTTTGACTG 59.464 50.000 4.92 0.00 34.40 3.51
694 695 2.165845 ACTCCGCGTATTAGCTTTGACT 59.834 45.455 4.92 0.00 34.40 3.41
695 696 2.537401 ACTCCGCGTATTAGCTTTGAC 58.463 47.619 4.92 0.00 34.40 3.18
696 697 2.953466 ACTCCGCGTATTAGCTTTGA 57.047 45.000 4.92 0.00 34.40 2.69
697 698 5.652744 ATTTACTCCGCGTATTAGCTTTG 57.347 39.130 4.92 0.00 34.40 2.77
698 699 7.775397 TTTATTTACTCCGCGTATTAGCTTT 57.225 32.000 4.92 0.00 34.40 3.51
699 700 7.775397 TTTTATTTACTCCGCGTATTAGCTT 57.225 32.000 4.92 0.00 34.40 3.74
700 701 7.278424 TGTTTTTATTTACTCCGCGTATTAGCT 59.722 33.333 4.92 0.00 34.40 3.32
701 702 7.401080 TGTTTTTATTTACTCCGCGTATTAGC 58.599 34.615 4.92 0.00 0.00 3.09
702 703 9.757859 TTTGTTTTTATTTACTCCGCGTATTAG 57.242 29.630 4.92 0.00 0.00 1.73
703 704 9.540431 GTTTGTTTTTATTTACTCCGCGTATTA 57.460 29.630 4.92 0.00 0.00 0.98
704 705 7.268872 CGTTTGTTTTTATTTACTCCGCGTATT 59.731 33.333 4.92 0.00 0.00 1.89
705 706 6.737750 CGTTTGTTTTTATTTACTCCGCGTAT 59.262 34.615 4.92 0.00 0.00 3.06
706 707 6.070196 CGTTTGTTTTTATTTACTCCGCGTA 58.930 36.000 4.92 0.00 0.00 4.42
707 708 4.905295 CGTTTGTTTTTATTTACTCCGCGT 59.095 37.500 4.92 0.00 0.00 6.01
708 709 4.318854 CCGTTTGTTTTTATTTACTCCGCG 59.681 41.667 0.00 0.00 0.00 6.46
709 710 5.451039 TCCGTTTGTTTTTATTTACTCCGC 58.549 37.500 0.00 0.00 0.00 5.54
710 711 6.661669 ACTCCGTTTGTTTTTATTTACTCCG 58.338 36.000 0.00 0.00 0.00 4.63
711 712 8.777413 AGTACTCCGTTTGTTTTTATTTACTCC 58.223 33.333 0.00 0.00 0.00 3.85
716 717 9.887406 CATGTAGTACTCCGTTTGTTTTTATTT 57.113 29.630 0.00 0.00 0.00 1.40
717 718 9.059260 ACATGTAGTACTCCGTTTGTTTTTATT 57.941 29.630 0.00 0.00 0.00 1.40
718 719 8.611654 ACATGTAGTACTCCGTTTGTTTTTAT 57.388 30.769 0.00 0.00 0.00 1.40
719 720 7.927629 AGACATGTAGTACTCCGTTTGTTTTTA 59.072 33.333 0.00 0.00 0.00 1.52
720 721 6.764560 AGACATGTAGTACTCCGTTTGTTTTT 59.235 34.615 0.00 0.00 0.00 1.94
721 722 6.285990 AGACATGTAGTACTCCGTTTGTTTT 58.714 36.000 0.00 0.00 0.00 2.43
722 723 5.850614 AGACATGTAGTACTCCGTTTGTTT 58.149 37.500 0.00 0.00 0.00 2.83
723 724 5.464030 AGACATGTAGTACTCCGTTTGTT 57.536 39.130 0.00 0.00 0.00 2.83
724 725 6.183360 GGATAGACATGTAGTACTCCGTTTGT 60.183 42.308 0.00 0.00 0.00 2.83
725 726 6.207213 GGATAGACATGTAGTACTCCGTTTG 58.793 44.000 0.00 0.00 0.00 2.93
726 727 5.301298 GGGATAGACATGTAGTACTCCGTTT 59.699 44.000 0.00 0.00 0.00 3.60
727 728 4.826183 GGGATAGACATGTAGTACTCCGTT 59.174 45.833 0.00 0.00 0.00 4.44
728 729 4.104420 AGGGATAGACATGTAGTACTCCGT 59.896 45.833 0.00 0.29 0.00 4.69
729 730 4.653868 AGGGATAGACATGTAGTACTCCG 58.346 47.826 0.00 0.00 0.00 4.63
730 731 6.778559 AGAAAGGGATAGACATGTAGTACTCC 59.221 42.308 0.00 1.12 0.00 3.85
731 732 7.502895 TGAGAAAGGGATAGACATGTAGTACTC 59.497 40.741 0.00 0.00 0.00 2.59
732 733 7.285858 GTGAGAAAGGGATAGACATGTAGTACT 59.714 40.741 0.00 0.00 0.00 2.73
733 734 7.068348 TGTGAGAAAGGGATAGACATGTAGTAC 59.932 40.741 0.00 0.00 0.00 2.73
734 735 7.123383 TGTGAGAAAGGGATAGACATGTAGTA 58.877 38.462 0.00 0.00 0.00 1.82
735 736 5.958380 TGTGAGAAAGGGATAGACATGTAGT 59.042 40.000 0.00 0.00 0.00 2.73
736 737 6.097554 ACTGTGAGAAAGGGATAGACATGTAG 59.902 42.308 0.00 0.00 0.00 2.74
737 738 5.958380 ACTGTGAGAAAGGGATAGACATGTA 59.042 40.000 0.00 0.00 0.00 2.29
738 739 4.780021 ACTGTGAGAAAGGGATAGACATGT 59.220 41.667 0.00 0.00 0.00 3.21
739 740 5.350504 ACTGTGAGAAAGGGATAGACATG 57.649 43.478 0.00 0.00 0.00 3.21
753 754 3.006430 TGCGGATACAAGAAACTGTGAGA 59.994 43.478 0.00 0.00 0.00 3.27
756 757 4.154015 TGAATGCGGATACAAGAAACTGTG 59.846 41.667 0.00 0.00 0.00 3.66
762 763 3.438781 GGTTGTGAATGCGGATACAAGAA 59.561 43.478 5.60 0.00 34.11 2.52
765 766 3.006940 GAGGTTGTGAATGCGGATACAA 58.993 45.455 1.56 1.56 0.00 2.41
769 770 1.003580 AGTGAGGTTGTGAATGCGGAT 59.996 47.619 0.00 0.00 0.00 4.18
773 774 0.242017 GCCAGTGAGGTTGTGAATGC 59.758 55.000 0.00 0.00 40.61 3.56
784 785 2.263741 GGGTTGCAGTGCCAGTGAG 61.264 63.158 13.72 0.00 0.00 3.51
788 789 2.693762 CGATGGGTTGCAGTGCCAG 61.694 63.158 13.72 0.00 0.00 4.85
791 792 0.745845 ATCTCGATGGGTTGCAGTGC 60.746 55.000 8.58 8.58 0.00 4.40
794 795 2.363680 AGTAGATCTCGATGGGTTGCAG 59.636 50.000 0.00 0.00 0.00 4.41
795 796 2.388735 AGTAGATCTCGATGGGTTGCA 58.611 47.619 0.00 0.00 0.00 4.08
796 797 3.318275 TGTAGTAGATCTCGATGGGTTGC 59.682 47.826 0.00 0.00 0.00 4.17
832 833 7.695201 CAGCAGATTTACATTGTCATTGTACTG 59.305 37.037 14.05 14.05 30.39 2.74
841 842 5.819379 TCATCCTCAGCAGATTTACATTGTC 59.181 40.000 0.00 0.00 0.00 3.18
885 886 4.066139 ATCCAAGCAGGGGTGGCC 62.066 66.667 0.00 0.00 38.24 5.36
886 887 2.440980 GATCCAAGCAGGGGTGGC 60.441 66.667 0.00 0.00 38.24 5.01
887 888 0.754217 CATGATCCAAGCAGGGGTGG 60.754 60.000 0.00 0.00 38.24 4.61
888 889 0.033796 ACATGATCCAAGCAGGGGTG 60.034 55.000 0.00 0.00 38.24 4.61
889 890 1.595311 TACATGATCCAAGCAGGGGT 58.405 50.000 0.00 0.00 38.24 4.95
890 891 2.787994 GATACATGATCCAAGCAGGGG 58.212 52.381 0.00 0.00 38.24 4.79
938 939 1.405121 CCAGGCAACCCGAGTACTTAC 60.405 57.143 0.00 0.00 35.76 2.34
941 942 2.955881 GCCAGGCAACCCGAGTACT 61.956 63.158 6.55 0.00 35.76 2.73
942 943 2.436115 GCCAGGCAACCCGAGTAC 60.436 66.667 6.55 0.00 35.76 2.73
1159 1160 0.534412 AGGTCAGTCGATTCAGCCTG 59.466 55.000 0.00 0.00 0.00 4.85
1245 1246 3.319198 GTGTCCGGGGAGCTCCAA 61.319 66.667 33.29 13.27 37.91 3.53
1478 1482 2.295885 CATCTGCCAGGAAGAATGGTC 58.704 52.381 0.00 0.00 40.17 4.02
1526 1530 2.288702 GCAGCTGATGGATGTACTCGAT 60.289 50.000 20.43 0.00 33.29 3.59
1685 1689 1.241990 GGGCCCCTCGTTTTCTTCAC 61.242 60.000 12.23 0.00 0.00 3.18
1700 1704 4.506255 CGGGAATGACAGGGGGCC 62.506 72.222 0.00 0.00 0.00 5.80
1775 1786 1.435577 GGTGCGTTTACCTCGACAAT 58.564 50.000 0.00 0.00 37.74 2.71
1776 1787 0.600782 GGGTGCGTTTACCTCGACAA 60.601 55.000 5.78 0.00 40.66 3.18
1827 1838 4.324402 GCTTGTCACCTTTCGCAATTATTG 59.676 41.667 0.00 0.00 0.00 1.90
1842 1853 3.414700 CTGCCGGTCGCTTGTCAC 61.415 66.667 1.90 0.00 38.78 3.67
1870 1881 3.697439 ATGGCGTCAACATCGGGGG 62.697 63.158 0.00 0.00 0.00 5.40
1874 1885 1.705337 GGACCATGGCGTCAACATCG 61.705 60.000 13.04 0.00 34.24 3.84
1944 1955 0.737715 AGATCGAGCCAAGTGTTCGC 60.738 55.000 0.00 0.00 34.52 4.70
1948 1959 2.563179 ACTACAAGATCGAGCCAAGTGT 59.437 45.455 0.00 0.00 0.00 3.55
2197 2208 7.974675 TGAAACTCTAGAAAGTTTGACAACAG 58.025 34.615 13.23 0.00 46.69 3.16
2238 2313 0.030369 ACGCGCGGTTAATCTCTAGG 59.970 55.000 35.22 0.47 0.00 3.02
2239 2314 1.268386 TGACGCGCGGTTAATCTCTAG 60.268 52.381 35.22 0.99 0.00 2.43
2240 2315 0.734309 TGACGCGCGGTTAATCTCTA 59.266 50.000 35.22 8.37 0.00 2.43
2241 2316 0.108992 TTGACGCGCGGTTAATCTCT 60.109 50.000 35.22 9.48 0.00 3.10
2242 2317 0.024619 GTTGACGCGCGGTTAATCTC 59.975 55.000 35.22 20.46 0.00 2.75
2243 2318 0.668096 TGTTGACGCGCGGTTAATCT 60.668 50.000 35.22 11.27 0.00 2.40
2244 2319 0.247145 CTGTTGACGCGCGGTTAATC 60.247 55.000 35.22 22.00 0.00 1.75
2245 2320 0.668096 TCTGTTGACGCGCGGTTAAT 60.668 50.000 35.22 13.06 0.00 1.40
2246 2321 0.668096 ATCTGTTGACGCGCGGTTAA 60.668 50.000 35.22 21.84 0.00 2.01
2247 2322 0.668096 AATCTGTTGACGCGCGGTTA 60.668 50.000 35.22 16.89 0.00 2.85
2248 2323 1.503818 AAATCTGTTGACGCGCGGTT 61.504 50.000 35.22 14.89 0.00 4.44
2249 2324 0.668096 TAAATCTGTTGACGCGCGGT 60.668 50.000 35.22 19.76 0.00 5.68
2250 2325 0.440758 TTAAATCTGTTGACGCGCGG 59.559 50.000 35.22 15.29 0.00 6.46
2251 2326 2.220315 TTTAAATCTGTTGACGCGCG 57.780 45.000 30.96 30.96 0.00 6.86
2252 2327 3.357823 CAGTTTTAAATCTGTTGACGCGC 59.642 43.478 5.73 0.00 0.00 6.86
2253 2328 4.523813 ACAGTTTTAAATCTGTTGACGCG 58.476 39.130 21.10 3.53 41.33 6.01
2254 2329 5.507077 TGACAGTTTTAAATCTGTTGACGC 58.493 37.500 25.35 16.07 43.64 5.19
2255 2330 7.351981 TGATGACAGTTTTAAATCTGTTGACG 58.648 34.615 25.35 5.71 43.64 4.35
2256 2331 9.173939 CTTGATGACAGTTTTAAATCTGTTGAC 57.826 33.333 25.35 19.72 43.64 3.18
2257 2332 9.119418 TCTTGATGACAGTTTTAAATCTGTTGA 57.881 29.630 25.35 18.01 43.64 3.18
2258 2333 9.734620 TTCTTGATGACAGTTTTAAATCTGTTG 57.265 29.630 25.35 14.83 43.64 3.33
2259 2334 9.956720 CTTCTTGATGACAGTTTTAAATCTGTT 57.043 29.630 25.35 15.13 43.64 3.16
2260 2335 8.571336 CCTTCTTGATGACAGTTTTAAATCTGT 58.429 33.333 25.03 25.03 45.81 3.41
2261 2336 8.025445 CCCTTCTTGATGACAGTTTTAAATCTG 58.975 37.037 20.01 20.01 37.65 2.90
2262 2337 7.944554 TCCCTTCTTGATGACAGTTTTAAATCT 59.055 33.333 0.00 0.00 0.00 2.40
2263 2338 8.110860 TCCCTTCTTGATGACAGTTTTAAATC 57.889 34.615 0.00 0.00 0.00 2.17
2264 2339 8.655935 ATCCCTTCTTGATGACAGTTTTAAAT 57.344 30.769 0.00 0.00 0.00 1.40
2265 2340 8.477419 AATCCCTTCTTGATGACAGTTTTAAA 57.523 30.769 0.00 0.00 0.00 1.52
2266 2341 8.477419 AAATCCCTTCTTGATGACAGTTTTAA 57.523 30.769 0.00 0.00 0.00 1.52
2267 2342 8.477419 AAAATCCCTTCTTGATGACAGTTTTA 57.523 30.769 0.00 0.00 0.00 1.52
2268 2343 6.983906 AAATCCCTTCTTGATGACAGTTTT 57.016 33.333 0.00 0.00 0.00 2.43
2269 2344 6.983906 AAAATCCCTTCTTGATGACAGTTT 57.016 33.333 0.00 0.00 0.00 2.66
2270 2345 6.983906 AAAAATCCCTTCTTGATGACAGTT 57.016 33.333 0.00 0.00 0.00 3.16
2271 2346 7.234355 ACTAAAAATCCCTTCTTGATGACAGT 58.766 34.615 0.00 0.00 0.00 3.55
2272 2347 7.693969 ACTAAAAATCCCTTCTTGATGACAG 57.306 36.000 0.00 0.00 0.00 3.51
2273 2348 8.477419 AAACTAAAAATCCCTTCTTGATGACA 57.523 30.769 0.00 0.00 0.00 3.58
2274 2349 8.576442 TGAAACTAAAAATCCCTTCTTGATGAC 58.424 33.333 0.00 0.00 0.00 3.06
2301 2376 9.831737 ATGACTGAAATTTTGACGAAATTCTAG 57.168 29.630 12.79 14.62 44.98 2.43
2373 2448 2.868899 TGCATGGTGTGTTGTAATGGA 58.131 42.857 0.00 0.00 0.00 3.41
2417 2492 7.812690 TCTCAGTCGTAGCCAAGTATTTATA 57.187 36.000 0.00 0.00 0.00 0.98
2419 2494 6.710597 ATCTCAGTCGTAGCCAAGTATTTA 57.289 37.500 0.00 0.00 0.00 1.40
2420 2495 5.599999 ATCTCAGTCGTAGCCAAGTATTT 57.400 39.130 0.00 0.00 0.00 1.40
2422 2497 6.902771 AATATCTCAGTCGTAGCCAAGTAT 57.097 37.500 0.00 0.00 0.00 2.12
2424 2499 5.361285 AGAAATATCTCAGTCGTAGCCAAGT 59.639 40.000 0.00 0.00 0.00 3.16
2425 2500 5.689514 CAGAAATATCTCAGTCGTAGCCAAG 59.310 44.000 0.00 0.00 32.03 3.61
2426 2501 5.359860 TCAGAAATATCTCAGTCGTAGCCAA 59.640 40.000 0.00 0.00 32.03 4.52
2455 2608 8.203485 GGCTAATCATGATTGGTTTTGGATTTA 58.797 33.333 27.59 5.07 32.65 1.40
2460 2613 4.142182 ACGGCTAATCATGATTGGTTTTGG 60.142 41.667 27.59 15.91 32.65 3.28
2510 2663 9.965902 AACTGGACATGGGAAGATAATAATATC 57.034 33.333 0.00 0.00 38.58 1.63
2526 2679 2.607771 CGCCCAAAAAGAACTGGACATG 60.608 50.000 0.00 0.00 34.35 3.21
2537 2690 6.541969 CATAAATTTTAAGCCGCCCAAAAAG 58.458 36.000 0.00 0.00 0.00 2.27
2556 2714 3.968265 AGCTAAGGAAAGGCAGCATAAA 58.032 40.909 0.00 0.00 36.47 1.40
2562 2720 5.705609 TTTTGTAAGCTAAGGAAAGGCAG 57.294 39.130 0.00 0.00 0.00 4.85
2573 2731 4.193865 GGGACGGCTTATTTTGTAAGCTA 58.806 43.478 16.55 0.00 46.58 3.32
2643 2801 4.399303 CGCTTCTCTTATTCATTGGGGTTT 59.601 41.667 0.00 0.00 0.00 3.27
2703 2862 3.057946 GCCAGTTCTTTTGACAGCTTAGG 60.058 47.826 0.00 0.00 0.00 2.69
2858 3017 9.638239 CAAAACAATACAACTATAACCAGCAAT 57.362 29.630 0.00 0.00 0.00 3.56
2941 3100 2.097007 GCGATTGCAGTCTCGATCAATC 60.097 50.000 16.52 0.00 42.15 2.67
2990 3161 6.952358 AGTTCCCATGAGTCACTTAGTAACTA 59.048 38.462 0.00 0.00 0.00 2.24
3055 3226 2.196749 CTGGAGTACACGTGATCATGC 58.803 52.381 25.01 10.64 0.00 4.06
3154 3330 8.275040 AGAGGTTATTGCTTATTAACTGACCAT 58.725 33.333 0.00 0.00 0.00 3.55
3197 3373 9.585099 GAGCAATTTATTTTGTGTGATCCAATA 57.415 29.630 0.00 0.00 0.00 1.90
3219 3395 0.609406 AGACACTCCTAGCACGAGCA 60.609 55.000 7.77 0.00 45.49 4.26
3266 3442 9.891828 CAAAAGTGCAATAGTTTAGATACAACA 57.108 29.630 0.00 0.00 31.72 3.33
3406 3585 8.970859 GCCTATAGCACTATCCATCAATATTT 57.029 34.615 0.00 0.00 42.97 1.40
3452 3632 3.475566 TCAAGTGAAAGACTGGAGGTG 57.524 47.619 0.00 0.00 34.02 4.00
3458 3638 8.616076 AGTTGTAAGATTTCAAGTGAAAGACTG 58.384 33.333 11.78 0.00 45.87 3.51
3462 3642 7.701924 TGCAAGTTGTAAGATTTCAAGTGAAAG 59.298 33.333 11.78 0.00 45.87 2.62
3499 3679 0.741915 GCAAGTTGTGACCCGGAAAA 59.258 50.000 0.73 0.00 0.00 2.29
3502 3682 0.179004 AATGCAAGTTGTGACCCGGA 60.179 50.000 0.73 0.00 0.00 5.14
3503 3683 0.039256 CAATGCAAGTTGTGACCCGG 60.039 55.000 4.48 0.00 0.00 5.73
3504 3684 0.667993 ACAATGCAAGTTGTGACCCG 59.332 50.000 4.90 0.00 40.60 5.28
3507 3687 4.423732 ACTTTGACAATGCAAGTTGTGAC 58.576 39.130 10.33 0.00 42.08 3.67
3509 3689 6.884096 TTAACTTTGACAATGCAAGTTGTG 57.116 33.333 10.33 0.00 42.08 3.33
3670 3853 5.122519 TGAAGTGTTTGAGATGCTACAACA 58.877 37.500 0.00 0.00 0.00 3.33
3713 3896 9.747898 ACATGATACAAATGTTCCTTTTACCTA 57.252 29.630 0.00 0.00 34.60 3.08
3715 3898 7.759433 CCACATGATACAAATGTTCCTTTTACC 59.241 37.037 0.00 0.00 36.10 2.85
3725 3908 5.918426 TGCAATCCACATGATACAAATGT 57.082 34.783 0.00 0.00 38.81 2.71
3790 3974 0.608856 TTCCCAGATGCGCAACACAT 60.609 50.000 17.11 0.00 0.00 3.21
3940 4156 2.041686 GTCGTGACCTCCTCTCGCT 61.042 63.158 0.00 0.00 36.12 4.93
3956 4172 0.320508 GTTGGGTGGAGACCGAAGTC 60.321 60.000 0.00 0.00 44.23 3.01
3957 4173 1.752833 GTTGGGTGGAGACCGAAGT 59.247 57.895 0.00 0.00 44.23 3.01
3958 4174 1.003718 GGTTGGGTGGAGACCGAAG 60.004 63.158 0.00 0.00 44.23 3.79
3959 4175 1.460689 AGGTTGGGTGGAGACCGAA 60.461 57.895 0.00 0.00 44.23 4.30
3960 4176 2.203182 AGGTTGGGTGGAGACCGA 59.797 61.111 0.00 0.00 44.23 4.69
3961 4177 2.347490 CAGGTTGGGTGGAGACCG 59.653 66.667 0.00 0.00 44.23 4.79
3962 4178 1.423794 TTCCAGGTTGGGTGGAGACC 61.424 60.000 0.00 0.00 45.00 3.85
3963 4179 0.036875 CTTCCAGGTTGGGTGGAGAC 59.963 60.000 0.00 0.00 45.00 3.36
3964 4180 1.133809 CCTTCCAGGTTGGGTGGAGA 61.134 60.000 0.00 0.00 45.00 3.71
3965 4181 1.380302 CCTTCCAGGTTGGGTGGAG 59.620 63.158 0.00 0.00 45.00 3.86
3966 4182 2.840753 GCCTTCCAGGTTGGGTGGA 61.841 63.158 10.10 0.00 42.62 4.02
3967 4183 2.283173 GCCTTCCAGGTTGGGTGG 60.283 66.667 0.00 0.00 38.32 4.61
3968 4184 1.604593 CTGCCTTCCAGGTTGGGTG 60.605 63.158 0.00 0.00 38.32 4.61
3969 4185 2.846532 CTGCCTTCCAGGTTGGGT 59.153 61.111 0.00 0.00 38.32 4.51
3976 4192 0.607489 CTTGTCACCCTGCCTTCCAG 60.607 60.000 0.00 0.00 41.41 3.86
3977 4193 1.455849 CTTGTCACCCTGCCTTCCA 59.544 57.895 0.00 0.00 0.00 3.53
3978 4194 1.973812 GCTTGTCACCCTGCCTTCC 60.974 63.158 0.00 0.00 0.00 3.46
3979 4195 0.823356 TTGCTTGTCACCCTGCCTTC 60.823 55.000 0.00 0.00 0.00 3.46
3980 4196 0.825010 CTTGCTTGTCACCCTGCCTT 60.825 55.000 0.00 0.00 0.00 4.35
3981 4197 1.228367 CTTGCTTGTCACCCTGCCT 60.228 57.895 0.00 0.00 0.00 4.75
3982 4198 3.359002 CTTGCTTGTCACCCTGCC 58.641 61.111 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.