Multiple sequence alignment - TraesCS3D01G434900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G434900 chr3D 100.000 4805 0 0 1 4805 547432398 547427594 0.000000e+00 8874.0
1 TraesCS3D01G434900 chr3D 83.333 96 4 3 2726 2819 108916347 108916262 1.430000e-10 78.7
2 TraesCS3D01G434900 chr3D 93.478 46 2 1 2726 2771 610350834 610350790 3.100000e-07 67.6
3 TraesCS3D01G434900 chr3B 95.142 2326 86 18 1 2317 724930056 724927749 0.000000e+00 3644.0
4 TraesCS3D01G434900 chr3B 88.513 1863 108 41 2809 4626 724927414 724925613 0.000000e+00 2158.0
5 TraesCS3D01G434900 chr3B 86.994 346 12 13 2428 2759 724927752 724927426 4.570000e-95 359.0
6 TraesCS3D01G434900 chr3B 93.617 47 2 1 2726 2772 822193915 822193870 8.630000e-08 69.4
7 TraesCS3D01G434900 chr3A 94.307 1985 77 15 746 2715 684293195 684291232 0.000000e+00 3007.0
8 TraesCS3D01G434900 chr3A 88.315 1917 96 51 2809 4654 684291164 684289305 0.000000e+00 2182.0
9 TraesCS3D01G434900 chr3A 91.498 741 33 11 1 720 684293923 684293192 0.000000e+00 992.0
10 TraesCS3D01G434900 chr3A 98.485 66 0 1 4688 4752 684289304 684289239 1.090000e-21 115.0
11 TraesCS3D01G434900 chr3A 97.778 45 1 0 4761 4805 684285090 684285046 1.430000e-10 78.7
12 TraesCS3D01G434900 chr3A 95.652 46 1 1 2726 2771 744438517 744438473 6.670000e-09 73.1
13 TraesCS3D01G434900 chr3A 100.000 36 0 0 2617 2652 36875043 36875008 3.100000e-07 67.6
14 TraesCS3D01G434900 chr7B 91.429 105 9 0 1554 1658 721807278 721807382 1.390000e-30 145.0
15 TraesCS3D01G434900 chr4A 84.106 151 21 3 1517 1667 575780479 575780332 5.010000e-30 143.0
16 TraesCS3D01G434900 chr4B 83.673 147 21 3 1517 1663 40075248 40075391 8.390000e-28 135.0
17 TraesCS3D01G434900 chr4D 87.179 117 15 0 1547 1663 27396069 27396185 3.020000e-27 134.0
18 TraesCS3D01G434900 chr4D 91.837 49 2 2 2723 2771 463465511 463465557 3.100000e-07 67.6
19 TraesCS3D01G434900 chr6A 81.132 106 10 6 2716 2816 480647878 480647978 5.160000e-10 76.8
20 TraesCS3D01G434900 chr6A 97.222 36 1 0 2618 2653 9575359 9575324 1.440000e-05 62.1
21 TraesCS3D01G434900 chr5D 81.188 101 5 7 2721 2819 541806269 541806181 8.630000e-08 69.4
22 TraesCS3D01G434900 chr5D 97.436 39 1 0 2616 2654 180468257 180468295 3.100000e-07 67.6
23 TraesCS3D01G434900 chr2D 95.349 43 2 0 2615 2657 363571566 363571608 8.630000e-08 69.4
24 TraesCS3D01G434900 chr2D 97.143 35 1 0 2617 2651 544882614 544882580 5.190000e-05 60.2
25 TraesCS3D01G434900 chr5B 100.000 36 0 0 2617 2652 391917278 391917313 3.100000e-07 67.6
26 TraesCS3D01G434900 chr2A 100.000 35 0 0 2617 2651 690730430 690730464 1.120000e-06 65.8
27 TraesCS3D01G434900 chr2A 80.435 92 10 6 2732 2819 717145342 717145429 4.010000e-06 63.9
28 TraesCS3D01G434900 chr1B 95.000 40 1 1 2614 2653 5247490 5247528 1.440000e-05 62.1
29 TraesCS3D01G434900 chr6B 94.872 39 1 1 2620 2658 646706648 646706611 5.190000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G434900 chr3D 547427594 547432398 4804 True 8874.000000 8874 100.000000 1 4805 1 chr3D.!!$R2 4804
1 TraesCS3D01G434900 chr3B 724925613 724930056 4443 True 2053.666667 3644 90.216333 1 4626 3 chr3B.!!$R2 4625
2 TraesCS3D01G434900 chr3A 684289239 684293923 4684 True 1574.000000 3007 93.151250 1 4752 4 chr3A.!!$R4 4751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.182061 GGCCAGCTCATTCTCCATCA 59.818 55.0 0.00 0.00 0.00 3.07 F
404 406 0.530870 CCGCCGAATCTTCCTCTTCC 60.531 60.0 0.00 0.00 0.00 3.46 F
726 751 0.867753 GAGGCATACTCGTGTCGCTG 60.868 60.0 10.57 2.38 36.29 5.18 F
2364 2412 0.448990 CCATGCACAAGGTGTCATCG 59.551 55.0 0.00 0.00 35.75 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 1981 1.488527 GCTCGAAACACGGCTATAGG 58.511 55.0 1.04 0.0 42.82 2.57 R
2270 2313 0.843984 ACACACTTGGCTGGTAGGTT 59.156 50.0 0.00 0.0 0.00 3.50 R
2630 2678 0.192566 ACTCCCTCCGGCCCATAATA 59.807 55.0 0.00 0.0 0.00 0.98 R
4220 4350 0.103026 TGCTAGTACGAGCTGCATGG 59.897 55.0 25.44 0.0 43.27 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 8.923270 ACCCTTCAAAGATAATGAGAAACAAAA 58.077 29.630 0.00 0.00 0.00 2.44
69 70 0.182061 GGCCAGCTCATTCTCCATCA 59.818 55.000 0.00 0.00 0.00 3.07
129 130 6.074888 CCTTTCTTGTAAAAACTTGCGATGTG 60.075 38.462 0.00 0.00 0.00 3.21
137 138 6.560253 AAAAACTTGCGATGTGTAATCTCT 57.440 33.333 0.00 0.00 0.00 3.10
142 143 2.499693 TGCGATGTGTAATCTCTTCCCA 59.500 45.455 0.00 0.00 0.00 4.37
145 146 3.983988 CGATGTGTAATCTCTTCCCATCG 59.016 47.826 0.00 0.00 42.51 3.84
193 194 3.878778 ACCTTCATGCCAACTCACTATC 58.121 45.455 0.00 0.00 0.00 2.08
225 226 5.935206 TCGATTAGGTGCAACAACTTTCATA 59.065 36.000 3.64 0.00 39.98 2.15
226 227 6.021596 CGATTAGGTGCAACAACTTTCATAC 58.978 40.000 3.64 0.00 39.98 2.39
269 270 5.553581 CGTTGCGTAAAAACAAAACTCATGG 60.554 40.000 0.00 0.00 0.00 3.66
327 329 2.099141 AGTGATGCATACACGCACTT 57.901 45.000 17.74 4.01 46.56 3.16
384 386 4.445385 ACAAAATTCTCATGCTTTTCGTGC 59.555 37.500 0.00 0.00 0.00 5.34
404 406 0.530870 CCGCCGAATCTTCCTCTTCC 60.531 60.000 0.00 0.00 0.00 3.46
408 410 2.939756 GCCGAATCTTCCTCTTCCTTTC 59.060 50.000 0.00 0.00 0.00 2.62
483 488 4.202377 TGGTCCGTTTATCACTCTTCCAAA 60.202 41.667 0.00 0.00 0.00 3.28
511 516 4.455877 ACCATACTTCTCCGCAAGAAAAAG 59.544 41.667 0.73 0.00 43.39 2.27
514 519 1.541588 CTTCTCCGCAAGAAAAAGGGG 59.458 52.381 0.73 0.00 43.39 4.79
515 520 0.893727 TCTCCGCAAGAAAAAGGGGC 60.894 55.000 0.00 0.00 43.02 5.80
517 522 2.258286 CGCAAGAAAAAGGGGCGG 59.742 61.111 0.00 0.00 43.63 6.13
549 554 8.948631 TGCAAAACTAAAAATAAATCACACCA 57.051 26.923 0.00 0.00 0.00 4.17
550 555 8.821894 TGCAAAACTAAAAATAAATCACACCAC 58.178 29.630 0.00 0.00 0.00 4.16
551 556 8.821894 GCAAAACTAAAAATAAATCACACCACA 58.178 29.630 0.00 0.00 0.00 4.17
561 566 2.325583 TCACACCACACTTCAGGTTC 57.674 50.000 0.00 0.00 35.52 3.62
666 671 4.151689 TGAGGAATTTTGCGAGTTTCGTAG 59.848 41.667 0.17 0.00 42.81 3.51
725 750 1.433879 GAGGCATACTCGTGTCGCT 59.566 57.895 10.57 0.06 36.29 4.93
726 751 0.867753 GAGGCATACTCGTGTCGCTG 60.868 60.000 10.57 2.38 36.29 5.18
727 752 2.517450 GGCATACTCGTGTCGCTGC 61.517 63.158 10.57 10.18 0.00 5.25
728 753 2.849966 GCATACTCGTGTCGCTGCG 61.850 63.158 17.25 17.25 0.00 5.18
729 754 2.579787 ATACTCGTGTCGCTGCGC 60.580 61.111 18.65 13.09 0.00 6.09
756 781 2.251371 GCGACGTTGCTTTCACCC 59.749 61.111 20.81 0.00 0.00 4.61
902 927 4.287326 GCCTATAAGAAGGGAAGGTAGCAT 59.713 45.833 0.00 0.00 37.11 3.79
1218 1247 1.779683 GCTGTTCGACTACAACGCC 59.220 57.895 0.00 0.00 0.00 5.68
1691 1729 3.125316 GCCGTCAGTTCTGTGGAAATTAG 59.875 47.826 14.37 0.00 32.81 1.73
1855 1894 9.981114 CAAAAGTACCCATTTTTAGTTGAGATT 57.019 29.630 0.00 0.00 0.00 2.40
1864 1903 7.492344 CCATTTTTAGTTGAGATTTATGGCACC 59.508 37.037 0.00 0.00 0.00 5.01
1892 1931 6.644347 AGTGTCATGTTGGTTCTTATCTAGG 58.356 40.000 0.00 0.00 0.00 3.02
1893 1932 5.817816 GTGTCATGTTGGTTCTTATCTAGGG 59.182 44.000 0.00 0.00 0.00 3.53
2026 2066 4.662145 GTGAAATGGGAGCGATAAAACTG 58.338 43.478 0.00 0.00 0.00 3.16
2057 2097 1.948721 GCAAAATCTCTTGGCCCCGG 61.949 60.000 0.00 0.00 0.00 5.73
2217 2260 5.594926 CAAATTTAGCACCATGAATCCCTC 58.405 41.667 0.00 0.00 0.00 4.30
2219 2262 1.140312 TAGCACCATGAATCCCTCCC 58.860 55.000 0.00 0.00 0.00 4.30
2238 2281 2.137523 CCCAGCTTGTTGAATGTTTGC 58.862 47.619 0.00 0.00 0.00 3.68
2239 2282 2.224113 CCCAGCTTGTTGAATGTTTGCT 60.224 45.455 0.00 0.00 0.00 3.91
2270 2313 5.626142 TCTGCCTTGGTAAATTTCAGTACA 58.374 37.500 0.00 0.00 0.00 2.90
2271 2314 6.065374 TCTGCCTTGGTAAATTTCAGTACAA 58.935 36.000 0.00 0.00 0.00 2.41
2272 2315 6.016610 TCTGCCTTGGTAAATTTCAGTACAAC 60.017 38.462 0.00 0.00 0.00 3.32
2292 2340 1.608590 CCTACCAGCCAAGTGTGTTTG 59.391 52.381 0.00 0.00 0.00 2.93
2360 2408 3.762293 TGCCATGCACAAGGTGTC 58.238 55.556 0.00 0.00 35.75 3.67
2364 2412 0.448990 CCATGCACAAGGTGTCATCG 59.551 55.000 0.00 0.00 35.75 3.84
2375 2423 1.523758 GTGTCATCGAAAGCCACCTT 58.476 50.000 0.00 0.00 0.00 3.50
2376 2424 1.880027 GTGTCATCGAAAGCCACCTTT 59.120 47.619 0.00 0.00 43.73 3.11
2389 2437 2.554344 GCCACCTTTCACTGGATAACCA 60.554 50.000 0.00 0.00 44.76 3.67
2404 2452 5.010617 TGGATAACCAACAAAGCTCCTTTTC 59.989 40.000 0.00 0.00 43.91 2.29
2405 2453 3.819564 AACCAACAAAGCTCCTTTTCC 57.180 42.857 0.00 0.00 30.60 3.13
2406 2454 2.039418 ACCAACAAAGCTCCTTTTCCC 58.961 47.619 0.00 0.00 30.60 3.97
2432 2480 4.260212 CCTTGTGTACTTGACAGTTGTTCG 60.260 45.833 0.00 0.00 39.29 3.95
2450 2498 1.869690 GAGCGTTGGAGGTTTCTGC 59.130 57.895 0.00 0.00 0.00 4.26
2599 2647 7.117523 CAGTAAACAAGGATCTTCTCTGAAGTG 59.882 40.741 7.13 1.52 0.00 3.16
2616 2664 4.877823 TGAAGTGAATCTCATGGTGCATAC 59.122 41.667 0.00 0.00 0.00 2.39
2617 2665 4.492494 AGTGAATCTCATGGTGCATACA 57.508 40.909 0.00 0.00 0.00 2.29
2619 2667 5.255687 AGTGAATCTCATGGTGCATACAAA 58.744 37.500 0.00 0.00 0.00 2.83
2621 2669 6.209192 AGTGAATCTCATGGTGCATACAAAAA 59.791 34.615 0.00 0.00 0.00 1.94
2622 2670 6.308766 GTGAATCTCATGGTGCATACAAAAAC 59.691 38.462 0.00 0.00 0.00 2.43
2623 2671 4.418013 TCTCATGGTGCATACAAAAACG 57.582 40.909 0.00 0.00 0.00 3.60
2624 2672 2.916716 CTCATGGTGCATACAAAAACGC 59.083 45.455 0.00 0.00 0.00 4.84
2625 2673 2.556189 TCATGGTGCATACAAAAACGCT 59.444 40.909 0.00 0.00 0.00 5.07
2627 2675 2.226330 TGGTGCATACAAAAACGCTCT 58.774 42.857 0.00 0.00 0.00 4.09
2628 2676 2.621055 TGGTGCATACAAAAACGCTCTT 59.379 40.909 0.00 0.00 0.00 2.85
2629 2677 3.815962 TGGTGCATACAAAAACGCTCTTA 59.184 39.130 0.00 0.00 0.00 2.10
2630 2678 4.457603 TGGTGCATACAAAAACGCTCTTAT 59.542 37.500 0.00 0.00 0.00 1.73
2631 2679 5.644206 TGGTGCATACAAAAACGCTCTTATA 59.356 36.000 0.00 0.00 0.00 0.98
2632 2680 6.317642 TGGTGCATACAAAAACGCTCTTATAT 59.682 34.615 0.00 0.00 0.00 0.86
2633 2681 7.148154 TGGTGCATACAAAAACGCTCTTATATT 60.148 33.333 0.00 0.00 0.00 1.28
2634 2682 8.339714 GGTGCATACAAAAACGCTCTTATATTA 58.660 33.333 0.00 0.00 0.00 0.98
2635 2683 9.878599 GTGCATACAAAAACGCTCTTATATTAT 57.121 29.630 0.00 0.00 0.00 1.28
2636 2684 9.877137 TGCATACAAAAACGCTCTTATATTATG 57.123 29.630 0.00 0.00 0.00 1.90
2637 2685 9.329913 GCATACAAAAACGCTCTTATATTATGG 57.670 33.333 0.00 0.00 0.00 2.74
2638 2686 9.825972 CATACAAAAACGCTCTTATATTATGGG 57.174 33.333 0.00 0.00 0.00 4.00
2639 2687 6.735130 ACAAAAACGCTCTTATATTATGGGC 58.265 36.000 0.00 0.00 0.00 5.36
2640 2688 5.959618 AAAACGCTCTTATATTATGGGCC 57.040 39.130 0.00 0.00 0.00 5.80
2641 2689 3.247006 ACGCTCTTATATTATGGGCCG 57.753 47.619 0.00 0.00 0.00 6.13
2642 2690 2.093658 ACGCTCTTATATTATGGGCCGG 60.094 50.000 0.00 0.00 0.00 6.13
2643 2691 2.167693 CGCTCTTATATTATGGGCCGGA 59.832 50.000 5.05 0.00 0.00 5.14
2644 2692 3.738281 CGCTCTTATATTATGGGCCGGAG 60.738 52.174 5.05 0.00 0.00 4.63
2676 2724 5.757320 CCATTTTCCTAGTGTATCAGCAGAG 59.243 44.000 0.00 0.00 0.00 3.35
2750 2811 9.646427 GCTACATCCTCTGTTCCTAAATATAAG 57.354 37.037 0.00 0.00 39.39 1.73
2753 2814 8.361139 ACATCCTCTGTTCCTAAATATAAGACG 58.639 37.037 0.00 0.00 32.90 4.18
2754 2815 7.893124 TCCTCTGTTCCTAAATATAAGACGT 57.107 36.000 0.00 0.00 0.00 4.34
2759 2820 9.158233 TCTGTTCCTAAATATAAGACGTTTTGG 57.842 33.333 0.83 0.00 0.00 3.28
2760 2821 7.754625 TGTTCCTAAATATAAGACGTTTTGGC 58.245 34.615 0.83 0.00 30.97 4.52
2761 2822 7.390996 TGTTCCTAAATATAAGACGTTTTGGCA 59.609 33.333 0.83 0.00 30.97 4.92
2763 2824 6.037830 TCCTAAATATAAGACGTTTTGGCAGC 59.962 38.462 0.83 0.00 30.97 5.25
2765 2826 5.485662 AATATAAGACGTTTTGGCAGCTC 57.514 39.130 0.83 0.00 0.00 4.09
2767 2828 0.531974 AAGACGTTTTGGCAGCTCGA 60.532 50.000 12.49 0.00 0.00 4.04
2769 2830 0.517316 GACGTTTTGGCAGCTCGAAT 59.483 50.000 12.49 0.00 0.00 3.34
2770 2831 0.951558 ACGTTTTGGCAGCTCGAATT 59.048 45.000 12.49 0.00 0.00 2.17
2771 2832 1.330306 CGTTTTGGCAGCTCGAATTG 58.670 50.000 0.00 0.00 0.00 2.32
2772 2833 1.063031 GTTTTGGCAGCTCGAATTGC 58.937 50.000 11.30 11.30 39.56 3.56
2773 2834 0.387112 TTTTGGCAGCTCGAATTGCG 60.387 50.000 12.89 0.00 41.17 4.85
2774 2835 1.514678 TTTGGCAGCTCGAATTGCGT 61.515 50.000 12.89 0.00 41.17 5.24
2775 2836 1.911293 TTGGCAGCTCGAATTGCGTC 61.911 55.000 12.89 3.39 41.17 5.19
2776 2837 2.390599 GGCAGCTCGAATTGCGTCA 61.391 57.895 12.89 0.00 41.17 4.35
2777 2838 1.497278 GCAGCTCGAATTGCGTCAA 59.503 52.632 5.21 0.00 41.80 3.18
2778 2839 0.110238 GCAGCTCGAATTGCGTCAAA 60.110 50.000 5.21 0.00 41.80 2.69
2779 2840 1.466360 GCAGCTCGAATTGCGTCAAAT 60.466 47.619 5.21 0.00 41.80 2.32
2780 2841 2.855180 CAGCTCGAATTGCGTCAAATT 58.145 42.857 0.00 0.00 41.80 1.82
2781 2842 2.591148 CAGCTCGAATTGCGTCAAATTG 59.409 45.455 0.00 0.00 41.80 2.32
2782 2843 2.483877 AGCTCGAATTGCGTCAAATTGA 59.516 40.909 0.00 0.00 41.80 2.57
2783 2844 3.058293 AGCTCGAATTGCGTCAAATTGAA 60.058 39.130 0.00 0.00 41.80 2.69
2784 2845 3.058129 GCTCGAATTGCGTCAAATTGAAC 59.942 43.478 0.00 0.00 41.80 3.18
2785 2846 4.466828 CTCGAATTGCGTCAAATTGAACT 58.533 39.130 0.00 0.00 41.80 3.01
2786 2847 4.218265 TCGAATTGCGTCAAATTGAACTG 58.782 39.130 0.00 0.00 41.80 3.16
2787 2848 3.181550 CGAATTGCGTCAAATTGAACTGC 60.182 43.478 0.00 3.28 34.64 4.40
2788 2849 2.132740 TTGCGTCAAATTGAACTGCC 57.867 45.000 11.73 0.00 0.00 4.85
2789 2850 1.028130 TGCGTCAAATTGAACTGCCA 58.972 45.000 11.73 0.00 0.00 4.92
2790 2851 1.406898 TGCGTCAAATTGAACTGCCAA 59.593 42.857 11.73 0.00 0.00 4.52
2791 2852 1.786579 GCGTCAAATTGAACTGCCAAC 59.213 47.619 0.00 0.00 0.00 3.77
2792 2853 2.043411 CGTCAAATTGAACTGCCAACG 58.957 47.619 0.00 0.00 0.00 4.10
2793 2854 2.540769 CGTCAAATTGAACTGCCAACGT 60.541 45.455 0.00 0.00 0.00 3.99
2794 2855 3.042887 GTCAAATTGAACTGCCAACGTC 58.957 45.455 0.00 0.00 0.00 4.34
2795 2856 2.948979 TCAAATTGAACTGCCAACGTCT 59.051 40.909 0.00 0.00 0.00 4.18
2796 2857 3.380004 TCAAATTGAACTGCCAACGTCTT 59.620 39.130 0.00 0.00 0.00 3.01
2797 2858 4.576873 TCAAATTGAACTGCCAACGTCTTA 59.423 37.500 0.00 0.00 0.00 2.10
2798 2859 5.240623 TCAAATTGAACTGCCAACGTCTTAT 59.759 36.000 0.00 0.00 0.00 1.73
2799 2860 6.428465 TCAAATTGAACTGCCAACGTCTTATA 59.572 34.615 0.00 0.00 0.00 0.98
2800 2861 7.120579 TCAAATTGAACTGCCAACGTCTTATAT 59.879 33.333 0.00 0.00 0.00 0.86
2801 2862 7.391148 AATTGAACTGCCAACGTCTTATATT 57.609 32.000 0.00 0.00 0.00 1.28
2802 2863 6.811253 TTGAACTGCCAACGTCTTATATTT 57.189 33.333 0.00 0.00 0.00 1.40
2803 2864 7.908827 TTGAACTGCCAACGTCTTATATTTA 57.091 32.000 0.00 0.00 0.00 1.40
2804 2865 7.534085 TGAACTGCCAACGTCTTATATTTAG 57.466 36.000 0.00 0.00 0.00 1.85
2805 2866 6.537301 TGAACTGCCAACGTCTTATATTTAGG 59.463 38.462 0.00 0.00 0.00 2.69
2806 2867 6.229936 ACTGCCAACGTCTTATATTTAGGA 57.770 37.500 0.00 0.00 0.00 2.94
2807 2868 6.281405 ACTGCCAACGTCTTATATTTAGGAG 58.719 40.000 0.00 0.00 0.00 3.69
2825 2886 7.526142 TTAGGAGCAGAGGTAGTAATATGTG 57.474 40.000 0.00 0.00 0.00 3.21
2826 2887 4.835615 AGGAGCAGAGGTAGTAATATGTGG 59.164 45.833 0.00 0.00 0.00 4.17
2827 2888 4.561105 GAGCAGAGGTAGTAATATGTGGC 58.439 47.826 0.00 0.00 0.00 5.01
2880 2941 3.181477 TGTTTTCCTGTGCAATCCAACAG 60.181 43.478 0.00 0.00 0.00 3.16
2953 3014 4.756084 ATTCTAACAGTCTTTGCACTGC 57.244 40.909 2.15 0.00 46.81 4.40
3011 3072 1.202818 ACCTGTTTCCTTCTCCTGTGC 60.203 52.381 0.00 0.00 0.00 4.57
3013 3074 0.250295 TGTTTCCTTCTCCTGTGCCG 60.250 55.000 0.00 0.00 0.00 5.69
3023 3084 0.977627 TCCTGTGCCGTCAGATGGAT 60.978 55.000 13.47 0.00 37.61 3.41
3044 3105 1.642762 AGGGCTTCAATCCTTGGTGAT 59.357 47.619 0.00 0.00 0.00 3.06
3050 3111 4.679662 CTTCAATCCTTGGTGATGCAATC 58.320 43.478 0.00 0.00 45.83 2.67
3122 3183 3.397439 TCTGCTCCCAGCTCTGCC 61.397 66.667 0.00 0.00 42.97 4.85
3265 3326 2.264794 GGCGACGGTCAGTCCATT 59.735 61.111 9.10 0.00 46.92 3.16
3266 3327 1.375523 GGCGACGGTCAGTCCATTT 60.376 57.895 9.10 0.00 46.92 2.32
3267 3328 1.359459 GGCGACGGTCAGTCCATTTC 61.359 60.000 9.10 0.00 46.92 2.17
3268 3329 0.389948 GCGACGGTCAGTCCATTTCT 60.390 55.000 9.10 0.00 46.92 2.52
3269 3330 1.939838 GCGACGGTCAGTCCATTTCTT 60.940 52.381 9.10 0.00 46.92 2.52
3270 3331 2.413837 CGACGGTCAGTCCATTTCTTT 58.586 47.619 9.10 0.00 46.92 2.52
3271 3332 2.157668 CGACGGTCAGTCCATTTCTTTG 59.842 50.000 9.10 0.00 46.92 2.77
3272 3333 3.399330 GACGGTCAGTCCATTTCTTTGA 58.601 45.455 2.62 0.00 43.95 2.69
3374 3439 3.066064 GTGCTTGATTGGTTGTGTGTGTA 59.934 43.478 0.00 0.00 0.00 2.90
3387 3452 2.548057 GTGTGTGTATGTGGTTCAGGTG 59.452 50.000 0.00 0.00 0.00 4.00
3525 3590 0.529337 CCGTCATCAGCTGCTTCGAT 60.529 55.000 9.47 0.00 0.00 3.59
3576 3641 1.536331 GTTCGTTTGTAATTCCCGCCA 59.464 47.619 0.00 0.00 0.00 5.69
3578 3643 1.807742 TCGTTTGTAATTCCCGCCAAG 59.192 47.619 0.00 0.00 0.00 3.61
3579 3644 1.731098 CGTTTGTAATTCCCGCCAAGC 60.731 52.381 0.00 0.00 0.00 4.01
3586 3654 0.257039 ATTCCCGCCAAGCATCTCTT 59.743 50.000 0.00 0.00 34.78 2.85
3593 3661 1.288350 CCAAGCATCTCTTCTCTGCG 58.712 55.000 0.00 0.00 40.78 5.18
3602 3670 1.301244 CTTCTCTGCGCCACTGTGT 60.301 57.895 4.18 0.00 0.00 3.72
3604 3672 0.319555 TTCTCTGCGCCACTGTGTAC 60.320 55.000 4.18 0.00 0.00 2.90
3617 3685 2.125713 TGTACCTGTGGCGATGCG 60.126 61.111 0.00 0.00 0.00 4.73
3622 3690 2.509111 CTGTGGCGATGCGTGCTA 60.509 61.111 0.00 0.00 0.00 3.49
3625 3693 1.024046 TGTGGCGATGCGTGCTAATT 61.024 50.000 0.00 0.00 0.00 1.40
3713 3800 5.057149 TCTTTACTGTTCTGTTCTTCTGGC 58.943 41.667 0.00 0.00 0.00 4.85
3718 3805 2.435805 TGTTCTGTTCTTCTGGCTGTCT 59.564 45.455 0.00 0.00 0.00 3.41
3878 3977 3.118408 GCTCTCTCTCTCCTGACTGTCTA 60.118 52.174 9.51 0.00 0.00 2.59
3905 4005 7.337938 TCAGGATGATGCTAGATGTACAAAAA 58.662 34.615 0.00 0.00 42.56 1.94
3906 4006 7.280876 TCAGGATGATGCTAGATGTACAAAAAC 59.719 37.037 0.00 0.00 42.56 2.43
3920 4020 1.587946 CAAAAACTTGTGCTGTTCCGC 59.412 47.619 0.00 0.00 0.00 5.54
3950 4050 2.654863 ACCAGTTCCTTGGACAACTTG 58.345 47.619 0.00 0.00 40.87 3.16
3979 4079 2.123077 CTCGCCATCTCCCTCCCT 60.123 66.667 0.00 0.00 0.00 4.20
3995 4095 1.607801 CCCTGCAGACATGAGACCGA 61.608 60.000 17.39 0.00 0.00 4.69
3996 4096 0.463204 CCTGCAGACATGAGACCGAT 59.537 55.000 17.39 0.00 0.00 4.18
3997 4097 1.537776 CCTGCAGACATGAGACCGATC 60.538 57.143 17.39 0.00 0.00 3.69
4031 4147 3.058914 GCTGTGAACCTGTGTGATGTAAC 60.059 47.826 0.00 0.00 0.00 2.50
4032 4148 4.126437 CTGTGAACCTGTGTGATGTAACA 58.874 43.478 0.00 0.00 0.00 2.41
4104 4222 3.285484 ACCATGGTGAAATGAGATGAGC 58.715 45.455 18.99 0.00 0.00 4.26
4105 4223 3.053842 ACCATGGTGAAATGAGATGAGCT 60.054 43.478 18.99 0.00 0.00 4.09
4109 4228 4.654915 TGGTGAAATGAGATGAGCTGAAA 58.345 39.130 0.00 0.00 0.00 2.69
4111 4230 5.048504 TGGTGAAATGAGATGAGCTGAAAAC 60.049 40.000 0.00 0.00 0.00 2.43
4120 4239 0.790814 GAGCTGAAAACGAACCGAGG 59.209 55.000 0.00 0.00 0.00 4.63
4123 4242 1.897398 CTGAAAACGAACCGAGGGCG 61.897 60.000 0.00 5.37 37.24 6.13
4137 4256 0.389025 AGGGCGTTTCCTTTTGCAAG 59.611 50.000 0.00 0.00 32.13 4.01
4143 4262 3.857010 GCGTTTCCTTTTGCAAGCATAGT 60.857 43.478 0.00 0.00 0.00 2.12
4218 4348 1.117150 GGGGACAATGATTGCATGCT 58.883 50.000 20.33 0.00 34.26 3.79
4219 4349 1.068127 GGGGACAATGATTGCATGCTC 59.932 52.381 20.33 9.72 34.26 4.26
4220 4350 1.068127 GGGACAATGATTGCATGCTCC 59.932 52.381 20.33 14.10 34.26 4.70
4221 4351 1.068127 GGACAATGATTGCATGCTCCC 59.932 52.381 20.33 7.97 34.26 4.30
4222 4352 1.752498 GACAATGATTGCATGCTCCCA 59.248 47.619 20.33 13.45 34.26 4.37
4234 4364 1.884926 GCTCCCATGCAGCTCGTAC 60.885 63.158 7.47 0.00 33.75 3.67
4235 4365 1.819229 CTCCCATGCAGCTCGTACT 59.181 57.895 0.00 0.00 0.00 2.73
4237 4367 1.000827 CTCCCATGCAGCTCGTACTAG 60.001 57.143 0.00 0.00 0.00 2.57
4238 4368 0.598680 CCCATGCAGCTCGTACTAGC 60.599 60.000 11.29 11.29 43.11 3.42
4239 4369 0.103026 CCATGCAGCTCGTACTAGCA 59.897 55.000 20.27 9.14 45.30 3.49
4243 4373 0.249238 GCAGCTCGTACTAGCATGCT 60.249 55.000 25.99 25.99 45.30 3.79
4245 4375 0.249238 AGCTCGTACTAGCATGCTGC 60.249 55.000 30.42 21.58 45.30 5.25
4273 4404 2.435234 CGGCCGGACGGAATTGAA 60.435 61.111 25.90 0.00 37.50 2.69
4284 4415 2.025887 ACGGAATTGAATTCTCTGGCCT 60.026 45.455 16.58 0.00 39.24 5.19
4293 4424 4.263639 TGAATTCTCTGGCCTCTTGTGATT 60.264 41.667 3.32 0.00 0.00 2.57
4294 4425 5.045651 TGAATTCTCTGGCCTCTTGTGATTA 60.046 40.000 3.32 0.00 0.00 1.75
4295 4426 3.895232 TCTCTGGCCTCTTGTGATTAC 57.105 47.619 3.32 0.00 0.00 1.89
4372 4506 3.643595 TAGCATTTGCAGGCCGGCT 62.644 57.895 28.31 16.01 45.16 5.52
4388 4522 0.610232 GGCTGGCTGAACTGGTCATT 60.610 55.000 0.00 0.00 35.07 2.57
4454 4600 1.169034 GGATCGGATTGGCTGCTTCC 61.169 60.000 0.00 3.30 0.00 3.46
4643 4797 3.303135 TCGTGGCTCGGCTTCACT 61.303 61.111 9.26 0.00 40.32 3.41
4647 4801 0.737715 GTGGCTCGGCTTCACTGTAG 60.738 60.000 0.00 0.00 0.00 2.74
4648 4802 1.185618 TGGCTCGGCTTCACTGTAGT 61.186 55.000 0.00 0.00 0.00 2.73
4649 4803 0.037232 GGCTCGGCTTCACTGTAGTT 60.037 55.000 0.00 0.00 0.00 2.24
4650 4804 1.608283 GGCTCGGCTTCACTGTAGTTT 60.608 52.381 0.00 0.00 0.00 2.66
4651 4805 2.353406 GGCTCGGCTTCACTGTAGTTTA 60.353 50.000 0.00 0.00 0.00 2.01
4652 4806 2.924290 GCTCGGCTTCACTGTAGTTTAG 59.076 50.000 0.00 0.00 0.00 1.85
4653 4807 3.614390 GCTCGGCTTCACTGTAGTTTAGT 60.614 47.826 0.00 0.00 0.00 2.24
4654 4808 4.380233 GCTCGGCTTCACTGTAGTTTAGTA 60.380 45.833 0.00 0.00 0.00 1.82
4655 4809 5.706916 CTCGGCTTCACTGTAGTTTAGTAA 58.293 41.667 0.00 0.00 0.00 2.24
4656 4810 5.706916 TCGGCTTCACTGTAGTTTAGTAAG 58.293 41.667 0.00 0.00 0.00 2.34
4657 4811 5.242393 TCGGCTTCACTGTAGTTTAGTAAGT 59.758 40.000 0.00 0.00 0.00 2.24
4658 4812 5.924825 CGGCTTCACTGTAGTTTAGTAAGTT 59.075 40.000 0.00 0.00 0.00 2.66
4659 4813 6.128902 CGGCTTCACTGTAGTTTAGTAAGTTG 60.129 42.308 0.00 0.00 0.00 3.16
4660 4814 6.927381 GGCTTCACTGTAGTTTAGTAAGTTGA 59.073 38.462 0.00 0.00 0.00 3.18
4661 4815 7.116519 GGCTTCACTGTAGTTTAGTAAGTTGAG 59.883 40.741 0.00 0.00 0.00 3.02
4662 4816 7.652507 GCTTCACTGTAGTTTAGTAAGTTGAGT 59.347 37.037 0.00 0.00 0.00 3.41
4663 4817 8.867112 TTCACTGTAGTTTAGTAAGTTGAGTG 57.133 34.615 0.00 0.00 31.87 3.51
4664 4818 8.229253 TCACTGTAGTTTAGTAAGTTGAGTGA 57.771 34.615 0.00 0.00 34.54 3.41
4665 4819 8.689061 TCACTGTAGTTTAGTAAGTTGAGTGAA 58.311 33.333 0.00 0.00 34.29 3.18
4666 4820 9.477484 CACTGTAGTTTAGTAAGTTGAGTGAAT 57.523 33.333 0.00 0.00 32.07 2.57
4685 4839 9.646427 GAGTGAATATAATATCCCAGTCTTGAC 57.354 37.037 0.00 0.00 0.00 3.18
4686 4840 9.159254 AGTGAATATAATATCCCAGTCTTGACA 57.841 33.333 3.49 0.00 0.00 3.58
4785 4939 7.827819 TTATTCAGAGTTTACGACATTCTGG 57.172 36.000 0.00 0.00 36.72 3.86
4786 4940 5.462530 TTCAGAGTTTACGACATTCTGGA 57.537 39.130 0.00 0.00 36.72 3.86
4787 4941 5.661056 TCAGAGTTTACGACATTCTGGAT 57.339 39.130 0.00 0.00 36.72 3.41
4788 4942 5.410924 TCAGAGTTTACGACATTCTGGATG 58.589 41.667 0.00 0.00 41.71 3.51
4789 4943 4.033358 CAGAGTTTACGACATTCTGGATGC 59.967 45.833 0.00 0.00 39.47 3.91
4790 4944 3.932710 GAGTTTACGACATTCTGGATGCA 59.067 43.478 0.00 0.00 39.47 3.96
4791 4945 4.323417 AGTTTACGACATTCTGGATGCAA 58.677 39.130 0.00 0.00 39.47 4.08
4792 4946 4.154195 AGTTTACGACATTCTGGATGCAAC 59.846 41.667 0.00 0.00 39.47 4.17
4793 4947 1.453155 ACGACATTCTGGATGCAACC 58.547 50.000 5.96 5.96 39.47 3.77
4794 4948 0.374758 CGACATTCTGGATGCAACCG 59.625 55.000 8.65 3.67 39.47 4.44
4795 4949 0.734889 GACATTCTGGATGCAACCGG 59.265 55.000 15.54 15.54 39.47 5.28
4796 4950 0.680921 ACATTCTGGATGCAACCGGG 60.681 55.000 20.72 10.27 39.47 5.73
4797 4951 1.076777 ATTCTGGATGCAACCGGGG 60.077 57.895 20.72 7.88 36.97 5.73
4798 4952 2.572333 ATTCTGGATGCAACCGGGGG 62.572 60.000 20.72 5.53 36.97 5.40
4799 4953 4.047125 CTGGATGCAACCGGGGGT 62.047 66.667 13.96 0.00 37.65 4.95
4800 4954 2.611172 TGGATGCAACCGGGGGTA 60.611 61.111 6.32 0.00 33.12 3.69
4801 4955 2.204865 CTGGATGCAACCGGGGGTAA 62.205 60.000 13.96 0.00 33.12 2.85
4802 4956 1.000646 GGATGCAACCGGGGGTAAA 60.001 57.895 6.32 0.00 33.12 2.01
4803 4957 1.317431 GGATGCAACCGGGGGTAAAC 61.317 60.000 6.32 0.00 33.12 2.01
4804 4958 0.323087 GATGCAACCGGGGGTAAACT 60.323 55.000 6.32 0.00 33.12 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.700564 TGGAGAATGAGCTGGCCTTT 59.299 50.000 3.32 0.00 0.00 3.11
89 90 0.690744 AAAGGTTTTGCTGGCAGGGT 60.691 50.000 17.64 0.00 0.00 4.34
129 130 4.402056 TGGAACGATGGGAAGAGATTAC 57.598 45.455 0.00 0.00 0.00 1.89
137 138 2.771943 AGCTAAGATGGAACGATGGGAA 59.228 45.455 0.00 0.00 0.00 3.97
142 143 3.195610 TGTGTGAGCTAAGATGGAACGAT 59.804 43.478 0.00 0.00 0.00 3.73
145 146 3.664107 TGTGTGTGAGCTAAGATGGAAC 58.336 45.455 0.00 0.00 0.00 3.62
193 194 3.459232 TGCACCTAATCGAAGGATCAG 57.541 47.619 10.18 0.00 39.15 2.90
327 329 4.503910 CGTGGTTTCTTACATGGAGATGA 58.496 43.478 0.00 0.00 33.36 2.92
364 366 3.578688 GGCACGAAAAGCATGAGAATTT 58.421 40.909 0.00 0.00 0.00 1.82
384 386 0.530870 GAAGAGGAAGATTCGGCGGG 60.531 60.000 7.21 0.00 0.00 6.13
483 488 3.695830 TGCGGAGAAGTATGGTTCTTT 57.304 42.857 0.00 0.00 36.89 2.52
511 516 1.133598 GTTTTGCAAGTATACCGCCCC 59.866 52.381 11.29 0.00 0.00 5.80
514 519 7.806149 ATTTTTAGTTTTGCAAGTATACCGC 57.194 32.000 0.00 7.73 0.00 5.68
730 755 0.870307 AGCAACGTCGCCGATACATC 60.870 55.000 0.00 0.00 37.88 3.06
733 758 0.024619 GAAAGCAACGTCGCCGATAC 59.975 55.000 0.00 0.00 37.88 2.24
734 759 0.388778 TGAAAGCAACGTCGCCGATA 60.389 50.000 0.00 0.00 37.88 2.92
735 760 1.666553 TGAAAGCAACGTCGCCGAT 60.667 52.632 0.00 0.00 37.88 4.18
736 761 2.279584 TGAAAGCAACGTCGCCGA 60.280 55.556 0.00 0.00 37.88 5.54
737 762 2.127758 GTGAAAGCAACGTCGCCG 60.128 61.111 0.00 0.00 40.83 6.46
738 763 2.251371 GGTGAAAGCAACGTCGCC 59.749 61.111 0.00 0.00 37.27 5.54
748 773 1.068333 CGTCAAGGCAATGGGTGAAAG 60.068 52.381 0.00 0.00 0.00 2.62
756 781 0.744414 ATCCGACCGTCAAGGCAATG 60.744 55.000 0.00 0.00 46.52 2.82
814 839 1.672881 CCGGATGCTTTTGGAGATCAC 59.327 52.381 0.00 0.00 0.00 3.06
819 844 1.755179 ACATCCGGATGCTTTTGGAG 58.245 50.000 38.44 16.56 42.39 3.86
902 927 1.152074 TTGGGTACTGGGTTCGGGA 60.152 57.895 0.00 0.00 0.00 5.14
1855 1894 3.265737 ACATGACACTAAGGGTGCCATAA 59.734 43.478 0.00 0.00 45.00 1.90
1864 1903 7.106239 AGATAAGAACCAACATGACACTAAGG 58.894 38.462 0.00 0.00 0.00 2.69
1892 1931 2.736670 ATTACTTCCTGGACATGGCC 57.263 50.000 12.04 12.04 0.00 5.36
1893 1932 5.652452 AGTTTTATTACTTCCTGGACATGGC 59.348 40.000 0.00 0.00 0.00 4.40
1936 1975 4.317488 TCGAAACACGGCTATAGGTTTTT 58.683 39.130 1.04 0.00 42.82 1.94
1941 1981 1.488527 GCTCGAAACACGGCTATAGG 58.511 55.000 1.04 0.00 42.82 2.57
2026 2066 3.191371 AGAGATTTTGCGGACAATGGAAC 59.809 43.478 0.00 0.00 35.21 3.62
2057 2097 2.305826 GAAAATTCCCGCGCTCCGAC 62.306 60.000 5.56 0.00 40.02 4.79
2182 2225 7.157347 TGGTGCTAAATTTGCATGAATTTGTA 58.843 30.769 16.05 6.22 42.69 2.41
2194 2237 5.452356 GGAGGGATTCATGGTGCTAAATTTG 60.452 44.000 0.00 0.00 0.00 2.32
2217 2260 2.758009 CAAACATTCAACAAGCTGGGG 58.242 47.619 0.00 0.00 0.00 4.96
2219 2262 3.102052 AGCAAACATTCAACAAGCTGG 57.898 42.857 0.00 0.00 0.00 4.85
2238 2281 6.575162 ATTTACCAAGGCAGAACAGTAAAG 57.425 37.500 0.00 0.00 34.32 1.85
2239 2282 6.969993 AATTTACCAAGGCAGAACAGTAAA 57.030 33.333 0.00 0.00 35.04 2.01
2270 2313 0.843984 ACACACTTGGCTGGTAGGTT 59.156 50.000 0.00 0.00 0.00 3.50
2271 2314 0.843984 AACACACTTGGCTGGTAGGT 59.156 50.000 0.00 0.00 0.00 3.08
2272 2315 1.608590 CAAACACACTTGGCTGGTAGG 59.391 52.381 0.00 0.00 0.00 3.18
2292 2340 7.566760 AACATCAAAAGAAAAATTCCCCAAC 57.433 32.000 0.00 0.00 0.00 3.77
2333 2381 3.039452 TGCATGGCACTGTGTTCAT 57.961 47.368 9.86 10.63 31.71 2.57
2360 2408 2.095567 CAGTGAAAGGTGGCTTTCGATG 60.096 50.000 0.00 0.00 43.96 3.84
2364 2412 1.981256 TCCAGTGAAAGGTGGCTTTC 58.019 50.000 0.00 0.00 42.06 2.62
2375 2423 4.469657 AGCTTTGTTGGTTATCCAGTGAA 58.530 39.130 0.00 0.00 45.22 3.18
2376 2424 4.072131 GAGCTTTGTTGGTTATCCAGTGA 58.928 43.478 0.00 0.00 45.22 3.41
2389 2437 1.717032 GGGGGAAAAGGAGCTTTGTT 58.283 50.000 0.00 0.00 33.64 2.83
2406 2454 1.420138 ACTGTCAAGTACACAAGGGGG 59.580 52.381 0.00 0.00 33.79 5.40
2432 2480 1.578206 GGCAGAAACCTCCAACGCTC 61.578 60.000 0.00 0.00 0.00 5.03
2450 2498 6.429692 ACTTTTCCAAGGAAACAAACAAAAGG 59.570 34.615 13.56 0.00 42.88 3.11
2479 2527 1.522258 CACGCCAAAACATGCAGAAAC 59.478 47.619 0.00 0.00 0.00 2.78
2599 2647 5.512788 CGTTTTTGTATGCACCATGAGATTC 59.487 40.000 0.00 0.00 0.00 2.52
2616 2664 6.149633 GGCCCATAATATAAGAGCGTTTTTG 58.850 40.000 0.00 0.00 0.00 2.44
2617 2665 5.048991 CGGCCCATAATATAAGAGCGTTTTT 60.049 40.000 0.00 0.00 0.00 1.94
2619 2667 4.000988 CGGCCCATAATATAAGAGCGTTT 58.999 43.478 0.00 0.00 0.00 3.60
2621 2669 2.093658 CCGGCCCATAATATAAGAGCGT 60.094 50.000 0.00 0.00 0.00 5.07
2622 2670 2.167693 TCCGGCCCATAATATAAGAGCG 59.832 50.000 0.00 0.00 0.00 5.03
2623 2671 3.432326 CCTCCGGCCCATAATATAAGAGC 60.432 52.174 0.00 0.00 0.00 4.09
2624 2672 3.134804 CCCTCCGGCCCATAATATAAGAG 59.865 52.174 0.00 0.00 0.00 2.85
2625 2673 3.112263 CCCTCCGGCCCATAATATAAGA 58.888 50.000 0.00 0.00 0.00 2.10
2627 2675 3.112263 CTCCCTCCGGCCCATAATATAA 58.888 50.000 0.00 0.00 0.00 0.98
2628 2676 2.045326 ACTCCCTCCGGCCCATAATATA 59.955 50.000 0.00 0.00 0.00 0.86
2629 2677 1.203440 ACTCCCTCCGGCCCATAATAT 60.203 52.381 0.00 0.00 0.00 1.28
2630 2678 0.192566 ACTCCCTCCGGCCCATAATA 59.807 55.000 0.00 0.00 0.00 0.98
2631 2679 0.192566 TACTCCCTCCGGCCCATAAT 59.807 55.000 0.00 0.00 0.00 1.28
2632 2680 0.471211 CTACTCCCTCCGGCCCATAA 60.471 60.000 0.00 0.00 0.00 1.90
2633 2681 1.155390 CTACTCCCTCCGGCCCATA 59.845 63.158 0.00 0.00 0.00 2.74
2634 2682 2.122813 CTACTCCCTCCGGCCCAT 60.123 66.667 0.00 0.00 0.00 4.00
2638 2686 1.984288 AAATGGCTACTCCCTCCGGC 61.984 60.000 0.00 0.00 0.00 6.13
2639 2687 0.546598 AAAATGGCTACTCCCTCCGG 59.453 55.000 0.00 0.00 0.00 5.14
2640 2688 1.475213 GGAAAATGGCTACTCCCTCCG 60.475 57.143 0.00 0.00 0.00 4.63
2641 2689 1.847088 AGGAAAATGGCTACTCCCTCC 59.153 52.381 0.00 0.00 0.00 4.30
2642 2690 3.712218 ACTAGGAAAATGGCTACTCCCTC 59.288 47.826 0.00 0.00 0.00 4.30
2643 2691 3.456277 CACTAGGAAAATGGCTACTCCCT 59.544 47.826 0.00 0.00 0.00 4.20
2644 2692 3.200165 ACACTAGGAAAATGGCTACTCCC 59.800 47.826 0.00 0.00 0.00 4.30
2645 2693 4.489306 ACACTAGGAAAATGGCTACTCC 57.511 45.455 0.00 0.00 0.00 3.85
2646 2694 6.817184 TGATACACTAGGAAAATGGCTACTC 58.183 40.000 0.00 0.00 0.00 2.59
2647 2695 6.686632 GCTGATACACTAGGAAAATGGCTACT 60.687 42.308 0.00 0.00 0.00 2.57
2648 2696 5.467063 GCTGATACACTAGGAAAATGGCTAC 59.533 44.000 0.00 0.00 0.00 3.58
2705 2753 9.937175 GATGTAGCATAAAACCATAGAAACTTC 57.063 33.333 0.00 0.00 0.00 3.01
2712 2760 7.220030 ACAGAGGATGTAGCATAAAACCATAG 58.780 38.462 0.00 0.00 41.60 2.23
2713 2761 7.136822 ACAGAGGATGTAGCATAAAACCATA 57.863 36.000 0.00 0.00 41.60 2.74
2720 2781 7.432148 TTTAGGAACAGAGGATGTAGCATAA 57.568 36.000 0.00 0.00 43.00 1.90
2750 2811 0.517316 ATTCGAGCTGCCAAAACGTC 59.483 50.000 0.00 0.00 0.00 4.34
2752 2813 1.330306 CAATTCGAGCTGCCAAAACG 58.670 50.000 0.00 0.00 0.00 3.60
2753 2814 1.063031 GCAATTCGAGCTGCCAAAAC 58.937 50.000 9.11 0.00 32.18 2.43
2754 2815 0.387112 CGCAATTCGAGCTGCCAAAA 60.387 50.000 13.37 0.00 41.67 2.44
2759 2820 0.110238 TTTGACGCAATTCGAGCTGC 60.110 50.000 10.01 10.01 41.67 5.25
2760 2821 2.532531 ATTTGACGCAATTCGAGCTG 57.467 45.000 0.00 0.00 41.67 4.24
2761 2822 2.483877 TCAATTTGACGCAATTCGAGCT 59.516 40.909 0.00 0.00 41.67 4.09
2763 2824 4.319115 CAGTTCAATTTGACGCAATTCGAG 59.681 41.667 0.00 0.00 41.67 4.04
2765 2826 3.181550 GCAGTTCAATTTGACGCAATTCG 60.182 43.478 0.00 0.00 45.38 3.34
2767 2828 3.059166 GGCAGTTCAATTTGACGCAATT 58.941 40.909 13.58 0.00 0.00 2.32
2769 2830 1.406898 TGGCAGTTCAATTTGACGCAA 59.593 42.857 13.58 3.35 0.00 4.85
2770 2831 1.028130 TGGCAGTTCAATTTGACGCA 58.972 45.000 13.58 0.00 0.00 5.24
2771 2832 1.786579 GTTGGCAGTTCAATTTGACGC 59.213 47.619 0.00 2.66 0.00 5.19
2772 2833 2.043411 CGTTGGCAGTTCAATTTGACG 58.957 47.619 0.00 0.00 0.00 4.35
2773 2834 3.042887 GACGTTGGCAGTTCAATTTGAC 58.957 45.455 0.00 0.00 0.00 3.18
2774 2835 2.948979 AGACGTTGGCAGTTCAATTTGA 59.051 40.909 0.00 0.00 0.00 2.69
2775 2836 3.354089 AGACGTTGGCAGTTCAATTTG 57.646 42.857 0.00 0.00 0.00 2.32
2776 2837 5.705609 ATAAGACGTTGGCAGTTCAATTT 57.294 34.783 0.00 0.00 0.00 1.82
2777 2838 7.391148 AATATAAGACGTTGGCAGTTCAATT 57.609 32.000 0.00 0.00 0.00 2.32
2778 2839 7.391148 AAATATAAGACGTTGGCAGTTCAAT 57.609 32.000 0.00 0.00 0.00 2.57
2779 2840 6.811253 AAATATAAGACGTTGGCAGTTCAA 57.189 33.333 0.00 0.00 0.00 2.69
2780 2841 6.537301 CCTAAATATAAGACGTTGGCAGTTCA 59.463 38.462 0.00 0.00 0.00 3.18
2781 2842 6.759827 TCCTAAATATAAGACGTTGGCAGTTC 59.240 38.462 0.00 0.00 0.00 3.01
2782 2843 6.646267 TCCTAAATATAAGACGTTGGCAGTT 58.354 36.000 0.00 0.00 0.00 3.16
2783 2844 6.229936 TCCTAAATATAAGACGTTGGCAGT 57.770 37.500 0.00 0.00 0.00 4.40
2784 2845 5.177696 GCTCCTAAATATAAGACGTTGGCAG 59.822 44.000 0.00 0.00 0.00 4.85
2785 2846 5.054477 GCTCCTAAATATAAGACGTTGGCA 58.946 41.667 0.00 0.00 0.00 4.92
2786 2847 5.054477 TGCTCCTAAATATAAGACGTTGGC 58.946 41.667 0.00 0.00 0.00 4.52
2787 2848 6.513180 TCTGCTCCTAAATATAAGACGTTGG 58.487 40.000 0.00 0.00 0.00 3.77
2788 2849 6.642950 CCTCTGCTCCTAAATATAAGACGTTG 59.357 42.308 0.00 0.00 0.00 4.10
2789 2850 6.324254 ACCTCTGCTCCTAAATATAAGACGTT 59.676 38.462 0.00 0.00 0.00 3.99
2790 2851 5.834204 ACCTCTGCTCCTAAATATAAGACGT 59.166 40.000 0.00 0.00 0.00 4.34
2791 2852 6.334102 ACCTCTGCTCCTAAATATAAGACG 57.666 41.667 0.00 0.00 0.00 4.18
2792 2853 8.411991 ACTACCTCTGCTCCTAAATATAAGAC 57.588 38.462 0.00 0.00 0.00 3.01
2798 2859 9.824216 ACATATTACTACCTCTGCTCCTAAATA 57.176 33.333 0.00 0.00 0.00 1.40
2799 2860 8.589338 CACATATTACTACCTCTGCTCCTAAAT 58.411 37.037 0.00 0.00 0.00 1.40
2800 2861 7.015292 CCACATATTACTACCTCTGCTCCTAAA 59.985 40.741 0.00 0.00 0.00 1.85
2801 2862 6.493802 CCACATATTACTACCTCTGCTCCTAA 59.506 42.308 0.00 0.00 0.00 2.69
2802 2863 6.010850 CCACATATTACTACCTCTGCTCCTA 58.989 44.000 0.00 0.00 0.00 2.94
2803 2864 4.835615 CCACATATTACTACCTCTGCTCCT 59.164 45.833 0.00 0.00 0.00 3.69
2804 2865 4.561734 GCCACATATTACTACCTCTGCTCC 60.562 50.000 0.00 0.00 0.00 4.70
2805 2866 4.039245 TGCCACATATTACTACCTCTGCTC 59.961 45.833 0.00 0.00 0.00 4.26
2806 2867 3.967326 TGCCACATATTACTACCTCTGCT 59.033 43.478 0.00 0.00 0.00 4.24
2807 2868 4.202264 ACTGCCACATATTACTACCTCTGC 60.202 45.833 0.00 0.00 0.00 4.26
2821 2882 1.743772 GCCGATCAACTACTGCCACAT 60.744 52.381 0.00 0.00 0.00 3.21
2825 2886 1.432270 GCTGCCGATCAACTACTGCC 61.432 60.000 0.00 0.00 0.00 4.85
2826 2887 0.460987 AGCTGCCGATCAACTACTGC 60.461 55.000 0.00 0.00 0.00 4.40
2827 2888 1.134995 TGAGCTGCCGATCAACTACTG 60.135 52.381 0.00 0.00 31.63 2.74
2880 2941 5.051641 CGTTCTGTCGATATGCTAGGAAAAC 60.052 44.000 0.00 0.00 0.00 2.43
2953 3014 7.087409 TCAACCACTACAAATTATCATGCAG 57.913 36.000 0.00 0.00 0.00 4.41
3011 3072 1.001406 GAAGCCCTATCCATCTGACGG 59.999 57.143 0.00 0.00 0.00 4.79
3013 3074 3.845781 TTGAAGCCCTATCCATCTGAC 57.154 47.619 0.00 0.00 0.00 3.51
3044 3105 2.166459 CTCCTTCAGGTAGTCGATTGCA 59.834 50.000 0.00 0.00 36.34 4.08
3050 3111 0.741915 GGAGCTCCTTCAGGTAGTCG 59.258 60.000 26.25 0.00 36.34 4.18
3080 3141 1.167155 GCTCGGAGTGGAGATCGCTA 61.167 60.000 6.90 0.00 36.15 4.26
3083 3144 1.652012 GAGCTCGGAGTGGAGATCG 59.348 63.158 6.90 0.00 39.37 3.69
3122 3183 2.509336 GATGGTCCACCGAGTGCG 60.509 66.667 0.00 0.00 39.43 5.34
3224 3285 3.407967 CCGCTGGGGCTAGGGAAA 61.408 66.667 0.00 0.00 36.09 3.13
3265 3326 4.322198 GGCATGGCAGAAAGAATCAAAGAA 60.322 41.667 15.47 0.00 0.00 2.52
3266 3327 3.194116 GGCATGGCAGAAAGAATCAAAGA 59.806 43.478 15.47 0.00 0.00 2.52
3267 3328 3.056393 TGGCATGGCAGAAAGAATCAAAG 60.056 43.478 19.43 0.00 0.00 2.77
3268 3329 2.898612 TGGCATGGCAGAAAGAATCAAA 59.101 40.909 19.43 0.00 0.00 2.69
3269 3330 2.527497 TGGCATGGCAGAAAGAATCAA 58.473 42.857 19.43 0.00 0.00 2.57
3270 3331 2.219080 TGGCATGGCAGAAAGAATCA 57.781 45.000 19.43 0.00 0.00 2.57
3271 3332 2.223971 CCATGGCATGGCAGAAAGAATC 60.224 50.000 31.96 0.00 44.70 2.52
3272 3333 1.760613 CCATGGCATGGCAGAAAGAAT 59.239 47.619 31.96 5.75 44.70 2.40
3374 3439 0.401738 CACCTCCACCTGAACCACAT 59.598 55.000 0.00 0.00 0.00 3.21
3387 3452 0.762461 CCTCCCTCATCCTCACCTCC 60.762 65.000 0.00 0.00 0.00 4.30
3576 3641 0.461693 GGCGCAGAGAAGAGATGCTT 60.462 55.000 10.83 0.00 40.25 3.91
3578 3643 1.153489 TGGCGCAGAGAAGAGATGC 60.153 57.895 10.83 0.00 36.60 3.91
3579 3644 0.175302 AGTGGCGCAGAGAAGAGATG 59.825 55.000 10.83 0.00 0.00 2.90
3586 3654 1.289066 GTACACAGTGGCGCAGAGA 59.711 57.895 10.83 0.00 0.00 3.10
3593 3661 4.379174 CCACAGGTACACAGTGGC 57.621 61.111 14.93 0.00 45.39 5.01
3602 3670 2.125713 CACGCATCGCCACAGGTA 60.126 61.111 0.00 0.00 0.00 3.08
3617 3685 1.278238 CCGACCGACAGAATTAGCAC 58.722 55.000 0.00 0.00 0.00 4.40
3622 3690 0.677288 TGTCACCGACCGACAGAATT 59.323 50.000 0.00 0.00 38.45 2.17
3713 3800 1.474677 CCTCCCTGCATTGCTAGACAG 60.475 57.143 10.49 0.00 0.00 3.51
3718 3805 2.597340 GCCCTCCCTGCATTGCTA 59.403 61.111 10.49 0.00 0.00 3.49
3878 3977 5.143369 TGTACATCTAGCATCATCCTGACT 58.857 41.667 0.00 0.00 0.00 3.41
3905 4005 1.598130 GGAGCGGAACAGCACAAGT 60.598 57.895 0.00 0.00 40.15 3.16
3906 4006 0.886490 AAGGAGCGGAACAGCACAAG 60.886 55.000 0.00 0.00 40.15 3.16
3937 4037 2.584835 TCCCATCAAGTTGTCCAAGG 57.415 50.000 2.11 0.00 0.00 3.61
3950 4050 2.031768 GGCGAGCCTCATCCCATC 59.968 66.667 6.90 0.00 0.00 3.51
3979 4079 1.478631 AGATCGGTCTCATGTCTGCA 58.521 50.000 0.00 0.00 0.00 4.41
3995 4095 2.533916 TCACAGCACCAGAGAGAAGAT 58.466 47.619 0.00 0.00 0.00 2.40
3996 4096 2.001076 TCACAGCACCAGAGAGAAGA 57.999 50.000 0.00 0.00 0.00 2.87
3997 4097 2.411904 GTTCACAGCACCAGAGAGAAG 58.588 52.381 0.00 0.00 0.00 2.85
4031 4147 6.649557 AGTTCAACGGTAGGAAAAGATAACTG 59.350 38.462 0.00 0.00 0.00 3.16
4032 4148 6.766429 AGTTCAACGGTAGGAAAAGATAACT 58.234 36.000 0.00 0.00 0.00 2.24
4104 4222 1.866925 GCCCTCGGTTCGTTTTCAG 59.133 57.895 0.00 0.00 0.00 3.02
4105 4223 1.957186 CGCCCTCGGTTCGTTTTCA 60.957 57.895 0.00 0.00 0.00 2.69
4109 4228 2.109593 AAACGCCCTCGGTTCGTT 59.890 55.556 7.21 7.21 42.87 3.85
4120 4239 0.529555 TGCTTGCAAAAGGAAACGCC 60.530 50.000 0.00 0.00 0.00 5.68
4123 4242 4.870363 TGACTATGCTTGCAAAAGGAAAC 58.130 39.130 0.00 0.00 0.00 2.78
4137 4256 1.614317 GGCCATGGGGTATGACTATGC 60.614 57.143 15.13 0.00 39.21 3.14
4218 4348 1.032794 CTAGTACGAGCTGCATGGGA 58.967 55.000 1.02 0.00 0.00 4.37
4219 4349 0.598680 GCTAGTACGAGCTGCATGGG 60.599 60.000 19.44 0.00 39.50 4.00
4220 4350 0.103026 TGCTAGTACGAGCTGCATGG 59.897 55.000 25.44 0.00 43.27 3.66
4221 4351 2.145958 ATGCTAGTACGAGCTGCATG 57.854 50.000 25.44 0.00 43.27 4.06
4222 4352 1.871408 GCATGCTAGTACGAGCTGCAT 60.871 52.381 29.14 19.74 43.96 3.96
4238 4368 3.877357 CAGCTCGCCTGCAGCATG 61.877 66.667 8.66 0.00 44.04 4.06
4265 4396 3.895998 AGAGGCCAGAGAATTCAATTCC 58.104 45.455 5.01 2.26 40.13 3.01
4273 4404 4.472833 AGTAATCACAAGAGGCCAGAGAAT 59.527 41.667 5.01 0.00 0.00 2.40
4372 4506 4.835284 TGTATAATGACCAGTTCAGCCA 57.165 40.909 0.00 0.00 37.77 4.75
4534 4682 3.683966 CTCTGCCTCTGCCTGCCTG 62.684 68.421 0.00 0.00 36.33 4.85
4535 4683 3.400928 CTCTGCCTCTGCCTGCCT 61.401 66.667 0.00 0.00 36.33 4.75
4536 4684 4.486503 CCTCTGCCTCTGCCTGCC 62.487 72.222 0.00 0.00 36.33 4.85
4537 4685 4.486503 CCCTCTGCCTCTGCCTGC 62.487 72.222 0.00 0.00 36.33 4.85
4538 4686 4.486503 GCCCTCTGCCTCTGCCTG 62.487 72.222 0.00 0.00 36.33 4.85
4542 4690 3.672295 GAACCGCCCTCTGCCTCTG 62.672 68.421 0.00 0.00 36.24 3.35
4543 4691 3.394836 GAACCGCCCTCTGCCTCT 61.395 66.667 0.00 0.00 36.24 3.69
4544 4692 2.960688 AAGAACCGCCCTCTGCCTC 61.961 63.158 0.00 0.00 36.24 4.70
4634 4788 5.467705 ACTTACTAAACTACAGTGAAGCCG 58.532 41.667 0.00 0.00 0.00 5.52
4655 4809 9.386122 AGACTGGGATATTATATTCACTCAACT 57.614 33.333 0.00 0.00 0.00 3.16
4658 4812 9.379770 TCAAGACTGGGATATTATATTCACTCA 57.620 33.333 0.00 0.00 0.00 3.41
4659 4813 9.646427 GTCAAGACTGGGATATTATATTCACTC 57.354 37.037 0.00 0.00 0.00 3.51
4660 4814 9.159254 TGTCAAGACTGGGATATTATATTCACT 57.841 33.333 1.53 0.00 0.00 3.41
4661 4815 9.429359 CTGTCAAGACTGGGATATTATATTCAC 57.571 37.037 1.53 0.00 0.00 3.18
4662 4816 8.597167 CCTGTCAAGACTGGGATATTATATTCA 58.403 37.037 15.90 0.00 43.94 2.57
4663 4817 8.816894 TCCTGTCAAGACTGGGATATTATATTC 58.183 37.037 21.25 0.00 46.54 1.75
4664 4818 8.742125 TCCTGTCAAGACTGGGATATTATATT 57.258 34.615 21.25 0.00 46.54 1.28
4665 4819 8.923838 ATCCTGTCAAGACTGGGATATTATAT 57.076 34.615 21.25 6.59 46.54 0.86
4666 4820 8.742125 AATCCTGTCAAGACTGGGATATTATA 57.258 34.615 21.25 4.82 46.54 0.98
4667 4821 7.639062 AATCCTGTCAAGACTGGGATATTAT 57.361 36.000 21.25 7.73 46.54 1.28
4668 4822 7.127186 TCAAATCCTGTCAAGACTGGGATATTA 59.873 37.037 21.25 6.01 46.54 0.98
4669 4823 5.983333 AATCCTGTCAAGACTGGGATATT 57.017 39.130 21.25 13.21 46.54 1.28
4670 4824 5.429762 TCAAATCCTGTCAAGACTGGGATAT 59.570 40.000 21.25 8.89 46.54 1.63
4671 4825 4.782691 TCAAATCCTGTCAAGACTGGGATA 59.217 41.667 21.25 7.22 46.54 2.59
4672 4826 3.588842 TCAAATCCTGTCAAGACTGGGAT 59.411 43.478 21.25 18.68 46.54 3.85
4673 4827 2.978978 TCAAATCCTGTCAAGACTGGGA 59.021 45.455 21.25 17.57 46.54 4.37
4674 4828 3.077359 GTCAAATCCTGTCAAGACTGGG 58.923 50.000 21.25 13.78 46.54 4.45
4676 4830 2.738846 CGGTCAAATCCTGTCAAGACTG 59.261 50.000 1.53 1.06 0.00 3.51
4677 4831 2.368875 ACGGTCAAATCCTGTCAAGACT 59.631 45.455 1.53 0.00 0.00 3.24
4678 4832 2.767505 ACGGTCAAATCCTGTCAAGAC 58.232 47.619 0.00 0.00 0.00 3.01
4679 4833 3.399330 GAACGGTCAAATCCTGTCAAGA 58.601 45.455 0.00 0.00 0.00 3.02
4680 4834 2.157668 CGAACGGTCAAATCCTGTCAAG 59.842 50.000 0.00 0.00 0.00 3.02
4759 4913 9.529325 CCAGAATGTCGTAAACTCTGAATAATA 57.471 33.333 0.00 0.00 33.89 0.98
4760 4914 8.258007 TCCAGAATGTCGTAAACTCTGAATAAT 58.742 33.333 0.00 0.00 33.89 1.28
4761 4915 7.608153 TCCAGAATGTCGTAAACTCTGAATAA 58.392 34.615 0.00 0.00 33.89 1.40
4762 4916 7.165460 TCCAGAATGTCGTAAACTCTGAATA 57.835 36.000 0.00 0.00 33.89 1.75
4763 4917 6.037786 TCCAGAATGTCGTAAACTCTGAAT 57.962 37.500 0.00 0.00 33.89 2.57
4764 4918 5.462530 TCCAGAATGTCGTAAACTCTGAA 57.537 39.130 0.00 0.00 33.89 3.02
4765 4919 5.410924 CATCCAGAATGTCGTAAACTCTGA 58.589 41.667 0.00 0.00 33.89 3.27
4766 4920 4.033358 GCATCCAGAATGTCGTAAACTCTG 59.967 45.833 0.00 0.00 37.71 3.35
4767 4921 4.184629 GCATCCAGAATGTCGTAAACTCT 58.815 43.478 0.00 0.00 37.71 3.24
4768 4922 3.932710 TGCATCCAGAATGTCGTAAACTC 59.067 43.478 0.00 0.00 37.71 3.01
4769 4923 3.937814 TGCATCCAGAATGTCGTAAACT 58.062 40.909 0.00 0.00 37.71 2.66
4770 4924 4.403453 GTTGCATCCAGAATGTCGTAAAC 58.597 43.478 0.00 0.00 37.71 2.01
4771 4925 3.438781 GGTTGCATCCAGAATGTCGTAAA 59.561 43.478 9.02 0.00 37.71 2.01
4772 4926 3.006940 GGTTGCATCCAGAATGTCGTAA 58.993 45.455 9.02 0.00 37.71 3.18
4773 4927 2.627945 GGTTGCATCCAGAATGTCGTA 58.372 47.619 9.02 0.00 37.71 3.43
4774 4928 1.453155 GGTTGCATCCAGAATGTCGT 58.547 50.000 9.02 0.00 37.71 4.34
4775 4929 0.374758 CGGTTGCATCCAGAATGTCG 59.625 55.000 14.13 0.00 37.71 4.35
4776 4930 0.734889 CCGGTTGCATCCAGAATGTC 59.265 55.000 14.13 0.00 37.71 3.06
4777 4931 0.680921 CCCGGTTGCATCCAGAATGT 60.681 55.000 14.13 0.00 37.71 2.71
4778 4932 1.386525 CCCCGGTTGCATCCAGAATG 61.387 60.000 14.13 0.00 38.50 2.67
4779 4933 1.076777 CCCCGGTTGCATCCAGAAT 60.077 57.895 14.13 0.00 0.00 2.40
4780 4934 2.354729 CCCCGGTTGCATCCAGAA 59.645 61.111 14.13 0.00 0.00 3.02
4781 4935 3.727258 CCCCCGGTTGCATCCAGA 61.727 66.667 14.13 0.00 0.00 3.86
4782 4936 2.204865 TTACCCCCGGTTGCATCCAG 62.205 60.000 14.13 2.28 37.09 3.86
4783 4937 1.790635 TTTACCCCCGGTTGCATCCA 61.791 55.000 14.13 0.00 37.09 3.41
4784 4938 1.000646 TTTACCCCCGGTTGCATCC 60.001 57.895 0.00 3.51 37.09 3.51
4785 4939 0.323087 AGTTTACCCCCGGTTGCATC 60.323 55.000 0.00 0.00 37.09 3.91
4786 4940 1.771646 AGTTTACCCCCGGTTGCAT 59.228 52.632 0.00 0.00 37.09 3.96
4787 4941 3.252936 AGTTTACCCCCGGTTGCA 58.747 55.556 0.00 0.00 37.09 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.