Multiple sequence alignment - TraesCS3D01G434800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G434800 chr3D 100.000 6160 0 0 1 6160 547310824 547304665 0.000000e+00 11376.0
1 TraesCS3D01G434800 chr3D 94.737 76 3 1 3575 3649 46481650 46481725 3.900000e-22 117.0
2 TraesCS3D01G434800 chr3A 94.165 4610 172 45 877 5422 684052703 684048127 0.000000e+00 6933.0
3 TraesCS3D01G434800 chr3A 84.448 643 51 17 260 878 684056189 684055572 6.880000e-164 588.0
4 TraesCS3D01G434800 chr3A 80.104 578 52 24 5501 6039 684048077 684047524 7.540000e-99 372.0
5 TraesCS3D01G434800 chr3A 100.000 36 0 0 5468 5503 684048130 684048095 3.980000e-07 67.6
6 TraesCS3D01G434800 chr3B 95.941 3252 93 13 1594 4810 724754427 724751180 0.000000e+00 5238.0
7 TraesCS3D01G434800 chr3B 95.372 713 24 5 887 1597 724755254 724754549 0.000000e+00 1125.0
8 TraesCS3D01G434800 chr3B 85.672 670 63 13 251 895 724907718 724907057 0.000000e+00 675.0
9 TraesCS3D01G434800 chr3B 87.681 552 33 11 4795 5339 724751163 724750640 1.470000e-170 610.0
10 TraesCS3D01G434800 chr3B 80.044 912 70 43 5337 6160 724745045 724744158 1.930000e-159 573.0
11 TraesCS3D01G434800 chr3B 88.608 79 3 5 31 108 724907779 724907706 2.360000e-14 91.6
12 TraesCS3D01G434800 chr3B 75.490 204 34 14 511 704 793287825 793287628 1.100000e-12 86.1
13 TraesCS3D01G434800 chr3B 75.243 206 31 15 511 704 793328311 793328114 5.120000e-11 80.5
14 TraesCS3D01G434800 chr7D 99.296 142 1 0 111 252 174200642 174200783 2.200000e-64 257.0
15 TraesCS3D01G434800 chr7D 94.667 75 4 0 3575 3649 536778249 536778175 3.900000e-22 117.0
16 TraesCS3D01G434800 chr1B 97.333 150 4 0 107 256 145239995 145240144 7.920000e-64 255.0
17 TraesCS3D01G434800 chr6B 98.601 143 2 0 110 252 444206507 444206365 2.850000e-63 254.0
18 TraesCS3D01G434800 chr6B 98.592 142 2 0 111 252 255687792 255687651 1.030000e-62 252.0
19 TraesCS3D01G434800 chr6B 94.667 75 4 0 3575 3649 222008480 222008406 3.900000e-22 117.0
20 TraesCS3D01G434800 chr4A 98.601 143 2 0 110 252 305314208 305314066 2.850000e-63 254.0
21 TraesCS3D01G434800 chr4A 75.811 339 66 13 2652 2980 620191256 620190924 2.300000e-34 158.0
22 TraesCS3D01G434800 chr4D 95.031 161 7 1 96 256 362613178 362613337 1.030000e-62 252.0
23 TraesCS3D01G434800 chr4D 90.698 86 6 2 3565 3649 409444433 409444349 5.050000e-21 113.0
24 TraesCS3D01G434800 chr2D 94.969 159 5 2 95 252 245407818 245407974 4.770000e-61 246.0
25 TraesCS3D01G434800 chr1A 95.484 155 5 2 99 253 586140505 586140353 4.770000e-61 246.0
26 TraesCS3D01G434800 chr6D 94.340 159 8 1 106 263 301816774 301816932 6.170000e-60 243.0
27 TraesCS3D01G434800 chr5B 75.516 339 66 13 2652 2980 700332824 700332493 3.850000e-32 150.0
28 TraesCS3D01G434800 chr5B 84.416 154 18 6 1255 1405 700335688 700335538 4.980000e-31 147.0
29 TraesCS3D01G434800 chr5D 85.235 149 16 6 1255 1400 522032709 522032854 1.380000e-31 148.0
30 TraesCS3D01G434800 chr5D 84.564 149 17 6 1255 1400 522010278 522010423 6.440000e-30 143.0
31 TraesCS3D01G434800 chr5D 74.852 338 71 12 2652 2980 548881504 548881172 2.310000e-29 141.0
32 TraesCS3D01G434800 chr5D 74.852 338 69 13 2653 2980 522034908 522035239 8.330000e-29 139.0
33 TraesCS3D01G434800 chr5D 74.020 204 46 7 498 697 111959014 111959214 6.620000e-10 76.8
34 TraesCS3D01G434800 chr7B 95.946 74 2 1 3573 3645 213463510 213463437 1.080000e-22 119.0
35 TraesCS3D01G434800 chr6A 94.667 75 4 0 3575 3649 402953383 402953309 3.900000e-22 117.0
36 TraesCS3D01G434800 chr4B 93.506 77 4 1 3575 3651 182766025 182765950 5.050000e-21 113.0
37 TraesCS3D01G434800 chr4B 100.000 29 0 0 1021 1049 148504756 148504728 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G434800 chr3D 547304665 547310824 6159 True 11376.000000 11376 100.00000 1 6160 1 chr3D.!!$R1 6159
1 TraesCS3D01G434800 chr3A 684047524 684056189 8665 True 1990.150000 6933 89.67925 260 6039 4 chr3A.!!$R1 5779
2 TraesCS3D01G434800 chr3B 724750640 724755254 4614 True 2324.333333 5238 92.99800 887 5339 3 chr3B.!!$R4 4452
3 TraesCS3D01G434800 chr3B 724744158 724745045 887 True 573.000000 573 80.04400 5337 6160 1 chr3B.!!$R1 823
4 TraesCS3D01G434800 chr3B 724907057 724907779 722 True 383.300000 675 87.14000 31 895 2 chr3B.!!$R5 864

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.035056 CTAGTGGTTGGAAGGGGCTG 60.035 60.0 0.00 0.0 0.00 4.85 F
819 838 0.035820 TTTGTGGCGGCTAGGGTTAG 60.036 55.0 11.43 0.0 0.00 2.34 F
1413 4309 0.032952 TCGTACGGCTGCTTTCTGTT 59.967 50.0 16.52 0.0 0.00 3.16 F
2561 5587 0.038744 AGGACCCATGAAGTTGGCTG 59.961 55.0 0.00 0.0 35.29 4.85 F
4092 7150 0.320697 ACTTTGTCTCCCCGCTACAC 59.679 55.0 0.00 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 4297 1.949525 TGACCAGAAACAGAAAGCAGC 59.050 47.619 0.0 0.0 0.00 5.25 R
2561 5587 1.485066 TCCGCTGGGAATTTAGAGACC 59.515 52.381 0.0 0.0 40.15 3.85 R
2863 5889 0.609151 CCTGCAAATGATGGCAACCA 59.391 50.000 0.0 0.0 39.93 3.67 R
4357 7417 2.273619 AGTTCCCTGCTCCAGATCTTT 58.726 47.619 0.0 0.0 32.44 2.52 R
5755 8934 0.028902 GTTGTCTTCGTTGGTGGTGC 59.971 55.000 0.0 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.380479 TTGTGAGGAACCTACTCGTTG 57.620 47.619 0.00 0.00 37.79 4.10
21 22 2.313317 TGTGAGGAACCTACTCGTTGT 58.687 47.619 0.00 0.00 37.79 3.32
22 23 2.035449 TGTGAGGAACCTACTCGTTGTG 59.965 50.000 0.00 0.00 37.79 3.33
23 24 2.295349 GTGAGGAACCTACTCGTTGTGA 59.705 50.000 0.00 0.00 37.79 3.58
24 25 2.295349 TGAGGAACCTACTCGTTGTGAC 59.705 50.000 0.00 0.00 37.79 3.67
25 26 2.295349 GAGGAACCTACTCGTTGTGACA 59.705 50.000 0.00 0.00 0.00 3.58
26 27 2.035576 AGGAACCTACTCGTTGTGACAC 59.964 50.000 0.00 0.00 0.00 3.67
27 28 2.223876 GGAACCTACTCGTTGTGACACA 60.224 50.000 3.56 3.56 0.00 3.72
28 29 2.503920 ACCTACTCGTTGTGACACAC 57.496 50.000 8.05 3.06 34.56 3.82
29 30 1.752498 ACCTACTCGTTGTGACACACA 59.248 47.619 8.05 2.93 43.02 3.72
30 31 2.223735 ACCTACTCGTTGTGACACACAG 60.224 50.000 8.05 7.26 45.39 3.66
31 32 1.787155 CTACTCGTTGTGACACACAGC 59.213 52.381 8.05 7.09 45.39 4.40
32 33 0.108377 ACTCGTTGTGACACACAGCA 60.108 50.000 8.05 0.00 45.39 4.41
33 34 0.301687 CTCGTTGTGACACACAGCAC 59.698 55.000 8.05 2.80 45.39 4.40
34 35 0.108377 TCGTTGTGACACACAGCACT 60.108 50.000 8.05 0.00 45.39 4.40
46 47 6.147864 ACACACAGCACTCACATAAAAATT 57.852 33.333 0.00 0.00 0.00 1.82
47 48 6.208644 ACACACAGCACTCACATAAAAATTC 58.791 36.000 0.00 0.00 0.00 2.17
48 49 6.039717 ACACACAGCACTCACATAAAAATTCT 59.960 34.615 0.00 0.00 0.00 2.40
49 50 6.361481 CACACAGCACTCACATAAAAATTCTG 59.639 38.462 0.00 0.00 0.00 3.02
50 51 6.262944 ACACAGCACTCACATAAAAATTCTGA 59.737 34.615 0.00 0.00 0.00 3.27
79 80 1.002544 AGTCCAGAACCTTGTAGCAGC 59.997 52.381 0.00 0.00 0.00 5.25
89 90 1.731160 CTTGTAGCAGCTGCAGTTCTC 59.269 52.381 38.24 20.84 45.16 2.87
90 91 0.972134 TGTAGCAGCTGCAGTTCTCT 59.028 50.000 38.24 19.63 45.16 3.10
91 92 1.067283 TGTAGCAGCTGCAGTTCTCTC 60.067 52.381 38.24 18.65 45.16 3.20
92 93 1.067283 GTAGCAGCTGCAGTTCTCTCA 60.067 52.381 38.24 10.20 45.16 3.27
108 109 5.740290 TCTCTCACTAAGGTAAGGGTTTG 57.260 43.478 0.00 0.00 0.00 2.93
110 111 3.008704 TCTCACTAAGGTAAGGGTTTGGC 59.991 47.826 0.00 0.00 0.00 4.52
111 112 2.081462 CACTAAGGTAAGGGTTTGGCG 58.919 52.381 0.00 0.00 0.00 5.69
112 113 1.092348 CTAAGGTAAGGGTTTGGCGC 58.908 55.000 0.00 0.00 0.00 6.53
113 114 0.400975 TAAGGTAAGGGTTTGGCGCA 59.599 50.000 10.83 0.00 0.00 6.09
114 115 0.893727 AAGGTAAGGGTTTGGCGCAG 60.894 55.000 10.83 0.00 0.00 5.18
115 116 1.302993 GGTAAGGGTTTGGCGCAGA 60.303 57.895 10.83 0.00 0.00 4.26
116 117 1.583495 GGTAAGGGTTTGGCGCAGAC 61.583 60.000 10.83 3.87 0.00 3.51
117 118 0.605589 GTAAGGGTTTGGCGCAGACT 60.606 55.000 10.83 0.00 34.59 3.24
118 119 0.978151 TAAGGGTTTGGCGCAGACTA 59.022 50.000 10.83 0.00 34.59 2.59
119 120 0.109723 AAGGGTTTGGCGCAGACTAA 59.890 50.000 10.83 0.00 34.59 2.24
120 121 0.321653 AGGGTTTGGCGCAGACTAAG 60.322 55.000 10.83 0.00 34.59 2.18
121 122 1.305930 GGGTTTGGCGCAGACTAAGG 61.306 60.000 10.83 0.00 34.59 2.69
122 123 1.502190 GTTTGGCGCAGACTAAGGC 59.498 57.895 10.83 0.00 34.59 4.35
123 124 1.072332 TTTGGCGCAGACTAAGGCA 59.928 52.632 10.83 2.15 34.59 4.75
124 125 0.322456 TTTGGCGCAGACTAAGGCAT 60.322 50.000 10.83 0.00 40.12 4.40
125 126 0.539518 TTGGCGCAGACTAAGGCATA 59.460 50.000 10.83 0.00 40.12 3.14
126 127 0.104855 TGGCGCAGACTAAGGCATAG 59.895 55.000 10.83 0.00 34.59 2.23
127 128 1.224722 GGCGCAGACTAAGGCATAGC 61.225 60.000 10.83 0.00 34.78 2.97
138 139 3.403936 GGCATAGCCTAGTGGTTGG 57.596 57.895 0.00 0.00 46.69 3.77
139 140 0.837272 GGCATAGCCTAGTGGTTGGA 59.163 55.000 0.00 0.00 46.69 3.53
140 141 1.211949 GGCATAGCCTAGTGGTTGGAA 59.788 52.381 0.00 0.00 46.69 3.53
141 142 2.565841 GCATAGCCTAGTGGTTGGAAG 58.434 52.381 0.00 0.00 35.27 3.46
142 143 2.746472 GCATAGCCTAGTGGTTGGAAGG 60.746 54.545 0.00 0.00 35.27 3.46
143 144 1.580059 TAGCCTAGTGGTTGGAAGGG 58.420 55.000 0.00 0.00 35.27 3.95
144 145 1.208165 AGCCTAGTGGTTGGAAGGGG 61.208 60.000 0.00 0.00 35.27 4.79
145 146 1.303282 CCTAGTGGTTGGAAGGGGC 59.697 63.158 0.00 0.00 0.00 5.80
146 147 1.208165 CCTAGTGGTTGGAAGGGGCT 61.208 60.000 0.00 0.00 0.00 5.19
147 148 0.035056 CTAGTGGTTGGAAGGGGCTG 60.035 60.000 0.00 0.00 0.00 4.85
148 149 0.474854 TAGTGGTTGGAAGGGGCTGA 60.475 55.000 0.00 0.00 0.00 4.26
149 150 1.142688 AGTGGTTGGAAGGGGCTGAT 61.143 55.000 0.00 0.00 0.00 2.90
150 151 0.967380 GTGGTTGGAAGGGGCTGATG 60.967 60.000 0.00 0.00 0.00 3.07
151 152 2.054453 GGTTGGAAGGGGCTGATGC 61.054 63.158 0.00 0.00 38.76 3.91
161 162 2.440980 GCTGATGCCTTCCCACCC 60.441 66.667 0.00 0.00 0.00 4.61
162 163 3.089838 CTGATGCCTTCCCACCCA 58.910 61.111 0.00 0.00 0.00 4.51
163 164 1.379044 CTGATGCCTTCCCACCCAC 60.379 63.158 0.00 0.00 0.00 4.61
164 165 2.043953 GATGCCTTCCCACCCACC 60.044 66.667 0.00 0.00 0.00 4.61
165 166 3.662117 GATGCCTTCCCACCCACCC 62.662 68.421 0.00 0.00 0.00 4.61
167 168 4.366684 GCCTTCCCACCCACCCAG 62.367 72.222 0.00 0.00 0.00 4.45
168 169 3.661648 CCTTCCCACCCACCCAGG 61.662 72.222 0.00 0.00 37.03 4.45
169 170 2.858974 CTTCCCACCCACCCAGGT 60.859 66.667 0.00 0.00 42.40 4.00
170 171 2.370403 TTCCCACCCACCCAGGTT 60.370 61.111 0.00 0.00 38.39 3.50
171 172 2.426305 CTTCCCACCCACCCAGGTTC 62.426 65.000 0.00 0.00 38.39 3.62
172 173 3.182263 CCCACCCACCCAGGTTCA 61.182 66.667 0.00 0.00 38.39 3.18
173 174 2.773527 CCCACCCACCCAGGTTCAA 61.774 63.158 0.00 0.00 38.39 2.69
174 175 1.228552 CCACCCACCCAGGTTCAAG 60.229 63.158 0.00 0.00 38.39 3.02
175 176 1.228552 CACCCACCCAGGTTCAAGG 60.229 63.158 0.00 0.00 38.39 3.61
176 177 2.283173 CCCACCCAGGTTCAAGGC 60.283 66.667 0.00 0.00 34.66 4.35
177 178 2.520458 CCACCCAGGTTCAAGGCA 59.480 61.111 0.00 0.00 0.00 4.75
178 179 1.077265 CCACCCAGGTTCAAGGCAT 59.923 57.895 0.00 0.00 0.00 4.40
179 180 1.252904 CCACCCAGGTTCAAGGCATG 61.253 60.000 0.00 0.00 0.00 4.06
180 181 1.077265 ACCCAGGTTCAAGGCATGG 59.923 57.895 0.00 0.00 37.52 3.66
181 182 1.077265 CCCAGGTTCAAGGCATGGT 59.923 57.895 0.00 0.00 36.19 3.55
182 183 0.331278 CCCAGGTTCAAGGCATGGTA 59.669 55.000 0.00 0.00 36.19 3.25
183 184 1.463674 CCAGGTTCAAGGCATGGTAC 58.536 55.000 0.00 0.00 33.58 3.34
184 185 1.004745 CCAGGTTCAAGGCATGGTACT 59.995 52.381 0.00 0.00 33.58 2.73
185 186 2.555227 CCAGGTTCAAGGCATGGTACTT 60.555 50.000 0.00 0.00 33.58 2.24
186 187 2.489329 CAGGTTCAAGGCATGGTACTTG 59.511 50.000 0.00 0.00 44.09 3.16
187 188 1.202348 GGTTCAAGGCATGGTACTTGC 59.798 52.381 11.43 11.43 42.82 4.01
188 189 1.885887 GTTCAAGGCATGGTACTTGCA 59.114 47.619 18.60 0.00 42.82 4.08
189 190 2.284754 TCAAGGCATGGTACTTGCAA 57.715 45.000 18.60 0.00 42.82 4.08
190 191 2.806434 TCAAGGCATGGTACTTGCAAT 58.194 42.857 18.60 7.66 42.82 3.56
191 192 3.164268 TCAAGGCATGGTACTTGCAATT 58.836 40.909 18.60 0.00 42.82 2.32
192 193 3.577848 TCAAGGCATGGTACTTGCAATTT 59.422 39.130 18.60 9.78 42.82 1.82
193 194 3.598019 AGGCATGGTACTTGCAATTTG 57.402 42.857 18.60 0.00 41.95 2.32
194 195 2.234414 AGGCATGGTACTTGCAATTTGG 59.766 45.455 18.60 0.00 41.95 3.28
195 196 2.620242 GCATGGTACTTGCAATTTGGG 58.380 47.619 14.01 0.00 39.90 4.12
196 197 2.028203 GCATGGTACTTGCAATTTGGGT 60.028 45.455 14.01 0.00 39.90 4.51
197 198 3.556843 GCATGGTACTTGCAATTTGGGTT 60.557 43.478 14.01 0.00 39.90 4.11
198 199 4.640364 CATGGTACTTGCAATTTGGGTTT 58.360 39.130 0.00 0.00 0.00 3.27
199 200 4.065321 TGGTACTTGCAATTTGGGTTTG 57.935 40.909 0.00 0.00 0.00 2.93
200 201 3.452627 TGGTACTTGCAATTTGGGTTTGT 59.547 39.130 0.00 0.00 0.00 2.83
201 202 4.080863 TGGTACTTGCAATTTGGGTTTGTT 60.081 37.500 0.00 0.00 0.00 2.83
202 203 4.272261 GGTACTTGCAATTTGGGTTTGTTG 59.728 41.667 0.00 0.00 0.00 3.33
203 204 2.682352 ACTTGCAATTTGGGTTTGTTGC 59.318 40.909 0.00 2.25 45.27 4.17
205 206 2.753989 GCAATTTGGGTTTGTTGCAC 57.246 45.000 4.26 0.00 44.63 4.57
206 207 1.333308 GCAATTTGGGTTTGTTGCACC 59.667 47.619 4.26 0.00 44.63 5.01
207 208 2.636830 CAATTTGGGTTTGTTGCACCA 58.363 42.857 0.00 0.00 35.80 4.17
208 209 3.012518 CAATTTGGGTTTGTTGCACCAA 58.987 40.909 0.00 0.00 40.94 3.67
209 210 3.574354 ATTTGGGTTTGTTGCACCAAT 57.426 38.095 0.00 0.00 42.09 3.16
210 211 3.356529 TTTGGGTTTGTTGCACCAATT 57.643 38.095 0.00 0.00 42.09 2.32
211 212 4.487714 TTTGGGTTTGTTGCACCAATTA 57.512 36.364 0.00 0.00 42.09 1.40
212 213 4.696479 TTGGGTTTGTTGCACCAATTAT 57.304 36.364 0.00 0.00 38.02 1.28
213 214 5.808366 TTGGGTTTGTTGCACCAATTATA 57.192 34.783 0.00 0.00 38.02 0.98
214 215 6.365970 TTGGGTTTGTTGCACCAATTATAT 57.634 33.333 0.00 0.00 38.02 0.86
215 216 6.365970 TGGGTTTGTTGCACCAATTATATT 57.634 33.333 0.00 0.00 35.80 1.28
216 217 6.169094 TGGGTTTGTTGCACCAATTATATTG 58.831 36.000 0.00 0.00 35.80 1.90
217 218 6.169800 GGGTTTGTTGCACCAATTATATTGT 58.830 36.000 0.00 0.00 35.80 2.71
218 219 7.039011 TGGGTTTGTTGCACCAATTATATTGTA 60.039 33.333 0.00 0.00 35.80 2.41
219 220 7.491048 GGGTTTGTTGCACCAATTATATTGTAG 59.509 37.037 0.00 0.00 35.80 2.74
220 221 7.491048 GGTTTGTTGCACCAATTATATTGTAGG 59.509 37.037 0.00 0.00 34.04 3.18
221 222 6.707440 TGTTGCACCAATTATATTGTAGGG 57.293 37.500 0.00 0.00 0.00 3.53
222 223 5.596361 TGTTGCACCAATTATATTGTAGGGG 59.404 40.000 0.00 0.00 0.00 4.79
223 224 4.735369 TGCACCAATTATATTGTAGGGGG 58.265 43.478 0.00 0.00 0.00 5.40
224 225 4.169068 TGCACCAATTATATTGTAGGGGGT 59.831 41.667 0.00 0.00 0.00 4.95
225 226 5.144832 GCACCAATTATATTGTAGGGGGTT 58.855 41.667 0.00 0.00 0.00 4.11
226 227 5.243060 GCACCAATTATATTGTAGGGGGTTC 59.757 44.000 0.00 0.00 0.00 3.62
227 228 5.773176 CACCAATTATATTGTAGGGGGTTCC 59.227 44.000 0.00 0.00 0.00 3.62
240 241 3.069079 GGGGTTCCCTTACAGTCTTTC 57.931 52.381 7.87 0.00 41.34 2.62
241 242 2.643304 GGGGTTCCCTTACAGTCTTTCT 59.357 50.000 7.87 0.00 41.34 2.52
242 243 3.559384 GGGGTTCCCTTACAGTCTTTCTG 60.559 52.174 7.87 0.00 44.11 3.02
244 245 7.771544 GGGGTTCCCTTACAGTCTTTCTGTC 62.772 52.000 7.87 0.00 46.24 3.51
274 275 0.678950 AAATGTTTGGCCCGTGAAGG 59.321 50.000 0.00 0.00 40.63 3.46
286 287 2.350522 CCGTGAAGGATTCCTTGTCAG 58.649 52.381 22.64 10.45 46.93 3.51
355 356 1.275666 TCGAGGGAGAAATGGCTTCA 58.724 50.000 0.00 0.00 36.40 3.02
358 359 2.373224 GAGGGAGAAATGGCTTCAAGG 58.627 52.381 0.00 0.00 36.40 3.61
379 380 3.001330 GGACAAGTCAACAACTTCGTCAG 59.999 47.826 15.59 0.00 45.28 3.51
380 381 3.857052 ACAAGTCAACAACTTCGTCAGA 58.143 40.909 0.00 0.00 45.28 3.27
426 442 1.992667 CGATGAGCAACGCTTCTGTTA 59.007 47.619 0.00 0.00 39.88 2.41
436 452 3.128349 ACGCTTCTGTTACGTGAAATGT 58.872 40.909 0.00 0.00 38.85 2.71
520 538 2.430465 ACTGCTTCGCTTGATTGACAT 58.570 42.857 0.00 0.00 0.00 3.06
560 578 2.636830 AGAGATCCAACAAATCTGGCG 58.363 47.619 0.00 0.00 33.64 5.69
564 582 2.198827 TCCAACAAATCTGGCGACAT 57.801 45.000 0.00 0.00 41.51 3.06
579 597 1.501582 GACATCTACCCTCAAGGCCT 58.498 55.000 0.00 0.00 40.58 5.19
587 605 1.446272 CCTCAAGGCCTTCGTCGAC 60.446 63.158 17.29 5.18 0.00 4.20
595 613 2.651232 CTTCGTCGACGCCGGATC 60.651 66.667 32.19 0.00 39.60 3.36
603 621 3.672255 GACGCCGGATCGAACGTCA 62.672 63.158 20.50 0.00 46.66 4.35
637 655 5.196695 AGATGCTGAAAAGACCTTTATCCC 58.803 41.667 0.00 0.00 31.63 3.85
662 680 1.964933 TGTAATCACGTCACCACCTCA 59.035 47.619 0.00 0.00 0.00 3.86
686 704 3.303725 CGATGTCGCTGGAGAAACAAAAA 60.304 43.478 0.00 0.00 0.00 1.94
705 723 8.542497 ACAAAAACCTAAGAAAAACAAGAACC 57.458 30.769 0.00 0.00 0.00 3.62
715 733 7.346208 AGAAAAACAAGAACCAAGAAAAACG 57.654 32.000 0.00 0.00 0.00 3.60
725 743 3.881089 ACCAAGAAAAACGAAAGGACGAT 59.119 39.130 0.00 0.00 37.03 3.73
736 754 1.196012 AAGGACGATTCTCCACTCCC 58.804 55.000 0.00 0.00 31.94 4.30
780 799 1.003573 AAAGAGAGGAGGGGGCGAT 59.996 57.895 0.00 0.00 0.00 4.58
819 838 0.035820 TTTGTGGCGGCTAGGGTTAG 60.036 55.000 11.43 0.00 0.00 2.34
831 850 3.069872 GCTAGGGTTAGAGAAAGGTAGGC 59.930 52.174 0.00 0.00 0.00 3.93
847 866 4.228438 AGGTAGGCTTAGAGGAAATGCTTT 59.772 41.667 0.00 0.00 0.00 3.51
879 3773 4.811908 TGCATAGCACTAGTTTCGTGTTA 58.188 39.130 0.00 0.00 34.91 2.41
1073 3969 4.671590 TCCGACGAGTGCCCCTCA 62.672 66.667 0.00 0.00 40.48 3.86
1086 3982 3.402681 CCTCACGCCCATGGAGGT 61.403 66.667 15.22 7.64 42.60 3.85
1401 4297 2.547299 ATCTACTCCTCCTCGTACGG 57.453 55.000 16.52 6.09 0.00 4.02
1408 4304 1.215647 CTCCTCGTACGGCTGCTTT 59.784 57.895 16.52 0.00 0.00 3.51
1409 4305 0.802607 CTCCTCGTACGGCTGCTTTC 60.803 60.000 16.52 0.00 0.00 2.62
1410 4306 1.215647 CCTCGTACGGCTGCTTTCT 59.784 57.895 16.52 0.00 0.00 2.52
1411 4307 1.078759 CCTCGTACGGCTGCTTTCTG 61.079 60.000 16.52 0.00 0.00 3.02
1412 4308 0.388649 CTCGTACGGCTGCTTTCTGT 60.389 55.000 16.52 0.00 0.00 3.41
1413 4309 0.032952 TCGTACGGCTGCTTTCTGTT 59.967 50.000 16.52 0.00 0.00 3.16
1422 4318 2.287248 GCTGCTTTCTGTTTCTGGTCAC 60.287 50.000 0.00 0.00 0.00 3.67
1475 4373 3.324846 AGGCTCACTGTTTCAGTACATCA 59.675 43.478 2.03 0.00 43.43 3.07
1552 4450 7.750458 GTCATAATTCAGCTGAAAATCGTCAAA 59.250 33.333 31.55 6.55 37.61 2.69
1639 4662 4.404073 AGGTCAACAATGGCTGTAAACAAA 59.596 37.500 0.00 0.00 37.23 2.83
1677 4700 4.137543 CTGAAGACTAAACCTTGCCTTGT 58.862 43.478 0.00 0.00 0.00 3.16
1695 4718 8.607441 TGCCTTGTGATTCACTATATCATTAC 57.393 34.615 17.26 0.00 34.75 1.89
1860 4883 6.205658 CAGAGATCTCCATATCAAGTACGTGA 59.794 42.308 19.30 13.95 0.00 4.35
1887 4910 6.697641 TTTCAGTCAGTTTACTAGGGGAAT 57.302 37.500 0.00 0.00 0.00 3.01
2190 5213 0.524414 ACGGGTTTTTGCGGCTTATC 59.476 50.000 0.00 0.00 0.00 1.75
2247 5273 5.186996 TCTTGATGTTCTTGCTTTTCACC 57.813 39.130 0.00 0.00 0.00 4.02
2251 5277 2.088423 TGTTCTTGCTTTTCACCGTGT 58.912 42.857 0.00 0.00 0.00 4.49
2534 5560 1.872773 CTTCCCCTAAGGTCTCAGCT 58.127 55.000 0.00 0.00 36.75 4.24
2545 5571 2.359107 CTCAGCTTGGCGCAAGGA 60.359 61.111 10.83 4.35 41.31 3.36
2557 5583 0.523072 CGCAAGGACCCATGAAGTTG 59.477 55.000 0.00 0.00 0.00 3.16
2561 5587 0.038744 AGGACCCATGAAGTTGGCTG 59.961 55.000 0.00 0.00 35.29 4.85
2699 5725 5.467399 TGGTTTCATAACGACAGACGATTTT 59.533 36.000 0.00 0.00 45.77 1.82
2863 5889 6.127479 TGTGGAGCAACTTTTTAGTTCATTGT 60.127 34.615 0.00 0.00 0.00 2.71
3107 6133 6.392354 TGTTTAGTAGTTGTATCCCTCGTTG 58.608 40.000 0.00 0.00 0.00 4.10
3288 6314 8.898761 CCAGGTATGCTGTTTTGTGTATATAAA 58.101 33.333 0.00 0.00 0.00 1.40
3351 6377 8.398665 ACTGAACTGAATTTCTTTAGAACACAC 58.601 33.333 0.00 0.00 33.13 3.82
3352 6378 8.275015 TGAACTGAATTTCTTTAGAACACACA 57.725 30.769 0.00 0.00 33.13 3.72
3385 6411 5.769662 TGTGCCATTTGTATCAAGAGAAAGT 59.230 36.000 0.00 0.00 0.00 2.66
3427 6453 3.129109 ACTGCACTGCAATGATATCTCG 58.871 45.455 0.00 0.00 38.41 4.04
3572 6598 4.655963 AGAACATTTGGTGTGCTAGTCAT 58.344 39.130 0.00 0.00 45.32 3.06
3573 6599 4.697352 AGAACATTTGGTGTGCTAGTCATC 59.303 41.667 0.00 0.00 45.32 2.92
3602 6635 1.423541 TGGGTTTCAGCTCTTGCCTAA 59.576 47.619 0.00 0.00 40.80 2.69
3653 6687 6.930731 AGTTGTTGTTGTTATTGTTGGAGTT 58.069 32.000 0.00 0.00 0.00 3.01
3856 6914 8.816640 AATAAGTAGTTTTTGTTTGGCTCATG 57.183 30.769 0.00 0.00 0.00 3.07
4014 7072 6.456501 AGAGATATGGATAAGGTTTGTACGC 58.543 40.000 0.00 0.00 0.00 4.42
4092 7150 0.320697 ACTTTGTCTCCCCGCTACAC 59.679 55.000 0.00 0.00 0.00 2.90
4357 7417 2.212900 CTGTGTCGCTCGACCCATCA 62.213 60.000 18.23 11.43 43.97 3.07
4434 7494 3.641906 AGTGTCAAGTAGCTGTACCTGTT 59.358 43.478 0.00 0.00 0.00 3.16
4468 7531 4.265073 CTCCTTCATGTGGAAAACTAGGG 58.735 47.826 10.44 0.00 34.44 3.53
4567 7644 0.897401 AAGCAGCTTCCTCCCTTTGC 60.897 55.000 0.21 0.00 0.00 3.68
4588 7665 0.183014 ACGCCCTCGATCTCCTCTTA 59.817 55.000 0.00 0.00 39.41 2.10
4593 7670 2.625790 CCCTCGATCTCCTCTTAACTGG 59.374 54.545 0.00 0.00 0.00 4.00
4671 7748 0.820226 TCGTCCATCTTCTCCAGCAG 59.180 55.000 0.00 0.00 0.00 4.24
4713 7790 0.026285 GGAACGTGCGGAAATCATCG 59.974 55.000 0.00 0.00 0.00 3.84
4733 7810 5.293319 TCGCTCATACTAGAGAAGGTACT 57.707 43.478 0.00 0.00 37.87 2.73
4820 7929 8.818141 AACATCACACTAACCATATATTCTCG 57.182 34.615 0.00 0.00 0.00 4.04
4840 7949 1.071471 CTCAAGGCCTTCCACGTGT 59.929 57.895 17.29 0.00 33.74 4.49
4920 8029 4.798288 CAACGCCCATTGCATCAG 57.202 55.556 0.00 0.00 41.33 2.90
4930 8039 2.353889 CCATTGCATCAGACTACTGCAC 59.646 50.000 9.90 0.00 44.94 4.57
4977 8090 4.116961 TCACGGTGTCTGTTGAGTTAAAG 58.883 43.478 8.17 0.00 0.00 1.85
4991 8104 2.055100 GTTAAAGCATTTTTGGCGCGA 58.945 42.857 12.10 0.00 40.09 5.87
5021 8135 1.135603 CATTGCCAGGTGAACATGTCG 60.136 52.381 0.00 0.00 0.00 4.35
5132 8252 3.369381 CCTGACGGCAGAATTCGAT 57.631 52.632 23.07 0.00 45.17 3.59
5178 8298 6.915300 GCTGTGATGAGTATTCAGTAGTAGTG 59.085 42.308 0.00 0.00 36.61 2.74
5179 8299 7.415765 GCTGTGATGAGTATTCAGTAGTAGTGT 60.416 40.741 4.90 0.00 36.61 3.55
5180 8300 7.762382 TGTGATGAGTATTCAGTAGTAGTGTG 58.238 38.462 4.90 0.00 36.61 3.82
5181 8301 6.693545 GTGATGAGTATTCAGTAGTAGTGTGC 59.306 42.308 4.90 0.00 36.61 4.57
5182 8302 6.377146 TGATGAGTATTCAGTAGTAGTGTGCA 59.623 38.462 4.90 0.00 36.61 4.57
5183 8303 6.196079 TGAGTATTCAGTAGTAGTGTGCAG 57.804 41.667 4.90 0.00 0.00 4.41
5184 8304 5.710567 TGAGTATTCAGTAGTAGTGTGCAGT 59.289 40.000 4.90 0.00 0.00 4.40
5185 8305 6.882678 TGAGTATTCAGTAGTAGTGTGCAGTA 59.117 38.462 4.90 0.00 0.00 2.74
5186 8306 7.086230 AGTATTCAGTAGTAGTGTGCAGTAC 57.914 40.000 8.67 8.67 37.47 2.73
5187 8307 6.885376 AGTATTCAGTAGTAGTGTGCAGTACT 59.115 38.462 19.63 19.63 46.24 2.73
5188 8308 5.372547 TTCAGTAGTAGTGTGCAGTACTG 57.627 43.478 22.85 18.93 44.72 2.74
5231 8355 1.302511 GCCTGGAGAAAACCGCTGA 60.303 57.895 0.00 0.00 0.00 4.26
5280 8405 4.859798 GTGAGCTTGTAGACTGTGATGTAC 59.140 45.833 0.00 0.00 0.00 2.90
5281 8406 4.767409 TGAGCTTGTAGACTGTGATGTACT 59.233 41.667 0.00 0.00 0.00 2.73
5282 8407 5.106118 TGAGCTTGTAGACTGTGATGTACTC 60.106 44.000 0.00 0.00 0.00 2.59
5419 8545 3.020984 TCTGGTACATGTAGACGATGCA 58.979 45.455 5.62 0.00 38.20 3.96
5428 8554 0.097499 TAGACGATGCACACGTACGG 59.903 55.000 21.06 11.05 43.97 4.02
5448 8581 2.223782 GGACGTACACAACACCTGTACA 60.224 50.000 0.00 0.00 42.82 2.90
5450 8583 4.053295 GACGTACACAACACCTGTACATT 58.947 43.478 0.00 0.00 42.82 2.71
5451 8584 4.444536 ACGTACACAACACCTGTACATTT 58.555 39.130 0.00 0.00 42.82 2.32
5452 8585 4.877251 ACGTACACAACACCTGTACATTTT 59.123 37.500 0.00 0.00 42.82 1.82
5453 8586 6.047870 ACGTACACAACACCTGTACATTTTA 58.952 36.000 0.00 0.00 42.82 1.52
5454 8587 6.707161 ACGTACACAACACCTGTACATTTTAT 59.293 34.615 0.00 0.00 42.82 1.40
5455 8588 7.227116 ACGTACACAACACCTGTACATTTTATT 59.773 33.333 0.00 0.00 42.82 1.40
5456 8589 8.071368 CGTACACAACACCTGTACATTTTATTT 58.929 33.333 0.00 0.00 42.82 1.40
5457 8590 9.738832 GTACACAACACCTGTACATTTTATTTT 57.261 29.630 0.00 0.00 42.42 1.82
5526 8682 4.193334 TCGACCATCTGCTCGCCG 62.193 66.667 0.00 0.00 0.00 6.46
5548 8712 4.224274 ACCGGTCGCCGTTGACAA 62.224 61.111 0.00 0.00 46.80 3.18
5549 8713 3.708734 CCGGTCGCCGTTGACAAC 61.709 66.667 15.38 8.34 46.80 3.32
5550 8714 2.962786 CGGTCGCCGTTGACAACA 60.963 61.111 18.09 0.00 42.73 3.33
5551 8715 2.629763 GGTCGCCGTTGACAACAC 59.370 61.111 18.09 8.33 40.72 3.32
5552 8716 2.629763 GTCGCCGTTGACAACACC 59.370 61.111 18.09 7.07 38.75 4.16
5553 8717 1.885850 GTCGCCGTTGACAACACCT 60.886 57.895 18.09 0.00 38.75 4.00
5554 8718 0.598158 GTCGCCGTTGACAACACCTA 60.598 55.000 18.09 0.00 38.75 3.08
5555 8719 0.319083 TCGCCGTTGACAACACCTAT 59.681 50.000 18.09 0.00 0.00 2.57
5558 8722 3.380954 TCGCCGTTGACAACACCTATATA 59.619 43.478 18.09 0.00 0.00 0.86
5571 8735 8.367911 ACAACACCTATATATGTCAACGATGAT 58.632 33.333 0.00 0.00 38.01 2.45
5573 8737 9.856488 AACACCTATATATGTCAACGATGATAC 57.144 33.333 0.00 0.00 38.01 2.24
5578 8742 9.508567 CTATATATGTCAACGATGATACTGGTG 57.491 37.037 0.00 0.00 38.01 4.17
5581 8745 3.509967 TGTCAACGATGATACTGGTGTCT 59.490 43.478 0.00 0.00 38.01 3.41
5582 8746 4.021456 TGTCAACGATGATACTGGTGTCTT 60.021 41.667 0.00 0.00 38.01 3.01
5583 8747 4.563184 GTCAACGATGATACTGGTGTCTTC 59.437 45.833 0.00 2.27 38.01 2.87
5586 8750 3.119291 CGATGATACTGGTGTCTTCTGC 58.881 50.000 10.03 0.00 0.00 4.26
5587 8751 3.181482 CGATGATACTGGTGTCTTCTGCT 60.181 47.826 10.03 0.00 0.00 4.24
5588 8752 3.599730 TGATACTGGTGTCTTCTGCTG 57.400 47.619 0.00 0.00 0.00 4.41
5591 8755 0.394565 ACTGGTGTCTTCTGCTGGTC 59.605 55.000 0.00 0.00 0.00 4.02
5592 8756 0.668706 CTGGTGTCTTCTGCTGGTCG 60.669 60.000 0.00 0.00 0.00 4.79
5593 8757 1.367840 GGTGTCTTCTGCTGGTCGT 59.632 57.895 0.00 0.00 0.00 4.34
5594 8758 0.946221 GGTGTCTTCTGCTGGTCGTG 60.946 60.000 0.00 0.00 0.00 4.35
5595 8759 0.249489 GTGTCTTCTGCTGGTCGTGT 60.249 55.000 0.00 0.00 0.00 4.49
5596 8760 0.249447 TGTCTTCTGCTGGTCGTGTG 60.249 55.000 0.00 0.00 0.00 3.82
5611 8775 3.844911 TGTGAAACATACGGGCGAT 57.155 47.368 0.00 0.00 45.67 4.58
5626 8790 4.398044 ACGGGCGATATTTGTCAAAAAGAT 59.602 37.500 1.31 0.00 0.00 2.40
5627 8791 4.734854 CGGGCGATATTTGTCAAAAAGATG 59.265 41.667 1.31 0.00 0.00 2.90
5629 8793 6.099341 GGGCGATATTTGTCAAAAAGATGTT 58.901 36.000 1.31 0.00 0.00 2.71
5685 8851 0.890542 GCAGACCACTGTTGCCATGA 60.891 55.000 0.00 0.00 45.04 3.07
5686 8852 1.830279 CAGACCACTGTTGCCATGAT 58.170 50.000 0.00 0.00 39.11 2.45
5687 8853 1.741706 CAGACCACTGTTGCCATGATC 59.258 52.381 0.00 0.00 39.11 2.92
5688 8854 1.098050 GACCACTGTTGCCATGATCC 58.902 55.000 0.00 0.00 0.00 3.36
5689 8855 0.405198 ACCACTGTTGCCATGATCCA 59.595 50.000 0.00 0.00 0.00 3.41
5690 8856 1.006281 ACCACTGTTGCCATGATCCAT 59.994 47.619 0.00 0.00 0.00 3.41
5691 8857 1.679680 CCACTGTTGCCATGATCCATC 59.320 52.381 0.00 0.00 0.00 3.51
5692 8858 2.651455 CACTGTTGCCATGATCCATCT 58.349 47.619 0.00 0.00 0.00 2.90
5693 8859 2.617308 CACTGTTGCCATGATCCATCTC 59.383 50.000 0.00 0.00 0.00 2.75
5694 8860 2.508716 ACTGTTGCCATGATCCATCTCT 59.491 45.455 0.00 0.00 0.00 3.10
5695 8861 3.713248 ACTGTTGCCATGATCCATCTCTA 59.287 43.478 0.00 0.00 0.00 2.43
5696 8862 4.164796 ACTGTTGCCATGATCCATCTCTAA 59.835 41.667 0.00 0.00 0.00 2.10
5698 8864 5.067954 TGTTGCCATGATCCATCTCTAATG 58.932 41.667 0.00 0.00 0.00 1.90
5699 8865 4.296621 TGCCATGATCCATCTCTAATGG 57.703 45.455 0.00 0.00 40.48 3.16
5700 8866 3.009805 TGCCATGATCCATCTCTAATGGG 59.990 47.826 4.32 0.00 39.60 4.00
5715 8887 3.866582 GGGTCATGAGCCTCCCCG 61.867 72.222 32.11 0.00 45.14 5.73
5717 8889 2.670148 GGTCATGAGCCTCCCCGTT 61.670 63.158 14.08 0.00 0.00 4.44
5721 8893 2.670148 ATGAGCCTCCCCGTTCACC 61.670 63.158 0.00 0.00 0.00 4.02
5767 8946 2.203139 CACCAGCACCACCAACGA 60.203 61.111 0.00 0.00 0.00 3.85
5772 8951 0.813610 CAGCACCACCAACGAAGACA 60.814 55.000 0.00 0.00 0.00 3.41
5777 8956 0.944386 CCACCAACGAAGACAACCAG 59.056 55.000 0.00 0.00 0.00 4.00
5826 9015 1.940883 CCATGGACAGTGCATGCACC 61.941 60.000 39.94 28.15 43.65 5.01
5955 9182 4.960866 ACCCCGGCGAACCAAACC 62.961 66.667 9.30 0.00 34.57 3.27
6013 9245 3.600981 GGGCCCCTTCCCCTTGTT 61.601 66.667 12.23 0.00 40.51 2.83
6058 9316 2.159827 GCACACAGTAGTAAAAGCGAGC 60.160 50.000 0.00 0.00 0.00 5.03
6107 9365 0.108804 ATTCGATTCGCCGTGTCAGT 60.109 50.000 0.00 0.00 0.00 3.41
6145 9403 1.303888 AGGAGTGGGCGTACGAAGA 60.304 57.895 21.65 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.696707 ACAACGAGTAGGTTCCTCACAA 59.303 45.455 0.00 0.00 0.00 3.33
1 2 2.035449 CACAACGAGTAGGTTCCTCACA 59.965 50.000 0.00 0.00 0.00 3.58
2 3 2.295349 TCACAACGAGTAGGTTCCTCAC 59.705 50.000 0.00 0.00 0.00 3.51
4 5 2.295349 TGTCACAACGAGTAGGTTCCTC 59.705 50.000 0.00 0.00 0.00 3.71
5 6 2.035576 GTGTCACAACGAGTAGGTTCCT 59.964 50.000 0.00 0.00 0.00 3.36
6 7 2.223876 TGTGTCACAACGAGTAGGTTCC 60.224 50.000 2.31 0.00 0.00 3.62
7 8 2.793232 GTGTGTCACAACGAGTAGGTTC 59.207 50.000 7.38 0.00 34.08 3.62
8 9 2.166870 TGTGTGTCACAACGAGTAGGTT 59.833 45.455 7.38 0.00 41.69 3.50
9 10 1.752498 TGTGTGTCACAACGAGTAGGT 59.248 47.619 7.38 0.00 41.69 3.08
10 11 2.394708 CTGTGTGTCACAACGAGTAGG 58.605 52.381 7.38 0.00 44.08 3.18
11 12 1.787155 GCTGTGTGTCACAACGAGTAG 59.213 52.381 7.38 1.43 44.08 2.57
12 13 1.135333 TGCTGTGTGTCACAACGAGTA 59.865 47.619 7.38 1.17 44.08 2.59
13 14 0.108377 TGCTGTGTGTCACAACGAGT 60.108 50.000 7.38 0.00 44.08 4.18
14 15 0.301687 GTGCTGTGTGTCACAACGAG 59.698 55.000 7.38 5.47 44.08 4.18
15 16 0.108377 AGTGCTGTGTGTCACAACGA 60.108 50.000 7.38 0.00 44.08 3.85
16 17 0.301687 GAGTGCTGTGTGTCACAACG 59.698 55.000 7.38 2.84 44.08 4.10
17 18 1.062587 GTGAGTGCTGTGTGTCACAAC 59.937 52.381 7.38 2.15 44.08 3.32
18 19 1.338579 TGTGAGTGCTGTGTGTCACAA 60.339 47.619 7.38 0.00 44.79 3.33
19 20 0.248843 TGTGAGTGCTGTGTGTCACA 59.751 50.000 0.18 0.18 45.39 3.58
20 21 1.586422 ATGTGAGTGCTGTGTGTCAC 58.414 50.000 0.00 0.00 39.85 3.67
21 22 3.467374 TTATGTGAGTGCTGTGTGTCA 57.533 42.857 0.00 0.00 0.00 3.58
22 23 4.811555 TTTTATGTGAGTGCTGTGTGTC 57.188 40.909 0.00 0.00 0.00 3.67
23 24 5.772825 ATTTTTATGTGAGTGCTGTGTGT 57.227 34.783 0.00 0.00 0.00 3.72
24 25 6.361481 CAGAATTTTTATGTGAGTGCTGTGTG 59.639 38.462 0.00 0.00 0.00 3.82
25 26 6.262944 TCAGAATTTTTATGTGAGTGCTGTGT 59.737 34.615 0.00 0.00 0.00 3.72
26 27 6.671190 TCAGAATTTTTATGTGAGTGCTGTG 58.329 36.000 0.00 0.00 0.00 3.66
27 28 6.882610 TCAGAATTTTTATGTGAGTGCTGT 57.117 33.333 0.00 0.00 0.00 4.40
28 29 7.310664 ACATCAGAATTTTTATGTGAGTGCTG 58.689 34.615 0.00 0.00 31.56 4.41
29 30 7.362401 GGACATCAGAATTTTTATGTGAGTGCT 60.362 37.037 0.84 0.00 32.87 4.40
30 31 6.749118 GGACATCAGAATTTTTATGTGAGTGC 59.251 38.462 0.84 0.00 32.87 4.40
31 32 7.094248 TGGGACATCAGAATTTTTATGTGAGTG 60.094 37.037 0.84 0.00 32.87 3.51
32 33 6.947733 TGGGACATCAGAATTTTTATGTGAGT 59.052 34.615 0.84 0.00 32.87 3.41
33 34 7.395190 TGGGACATCAGAATTTTTATGTGAG 57.605 36.000 0.84 0.00 32.87 3.51
79 80 3.951775 ACCTTAGTGAGAGAACTGCAG 57.048 47.619 13.48 13.48 0.00 4.41
89 90 3.344515 GCCAAACCCTTACCTTAGTGAG 58.655 50.000 0.00 0.00 0.00 3.51
90 91 2.289819 CGCCAAACCCTTACCTTAGTGA 60.290 50.000 0.00 0.00 0.00 3.41
91 92 2.081462 CGCCAAACCCTTACCTTAGTG 58.919 52.381 0.00 0.00 0.00 2.74
92 93 1.612462 GCGCCAAACCCTTACCTTAGT 60.612 52.381 0.00 0.00 0.00 2.24
108 109 1.224722 GCTATGCCTTAGTCTGCGCC 61.225 60.000 4.18 0.00 0.00 6.53
110 111 2.906047 GGCTATGCCTTAGTCTGCG 58.094 57.895 0.73 0.00 46.69 5.18
121 122 2.565841 CTTCCAACCACTAGGCTATGC 58.434 52.381 0.00 0.00 39.06 3.14
122 123 2.158755 CCCTTCCAACCACTAGGCTATG 60.159 54.545 0.00 0.00 39.06 2.23
123 124 2.127708 CCCTTCCAACCACTAGGCTAT 58.872 52.381 0.00 0.00 39.06 2.97
124 125 1.580059 CCCTTCCAACCACTAGGCTA 58.420 55.000 0.00 0.00 39.06 3.93
125 126 1.208165 CCCCTTCCAACCACTAGGCT 61.208 60.000 0.00 0.00 39.06 4.58
126 127 1.303282 CCCCTTCCAACCACTAGGC 59.697 63.158 0.00 0.00 39.06 3.93
127 128 1.208165 AGCCCCTTCCAACCACTAGG 61.208 60.000 0.00 0.00 42.21 3.02
128 129 0.035056 CAGCCCCTTCCAACCACTAG 60.035 60.000 0.00 0.00 0.00 2.57
129 130 0.474854 TCAGCCCCTTCCAACCACTA 60.475 55.000 0.00 0.00 0.00 2.74
130 131 1.142688 ATCAGCCCCTTCCAACCACT 61.143 55.000 0.00 0.00 0.00 4.00
131 132 0.967380 CATCAGCCCCTTCCAACCAC 60.967 60.000 0.00 0.00 0.00 4.16
132 133 1.383799 CATCAGCCCCTTCCAACCA 59.616 57.895 0.00 0.00 0.00 3.67
133 134 2.054453 GCATCAGCCCCTTCCAACC 61.054 63.158 0.00 0.00 33.58 3.77
134 135 3.608432 GCATCAGCCCCTTCCAAC 58.392 61.111 0.00 0.00 33.58 3.77
144 145 2.440980 GGGTGGGAAGGCATCAGC 60.441 66.667 0.00 0.00 41.10 4.26
145 146 1.379044 GTGGGTGGGAAGGCATCAG 60.379 63.158 0.00 0.00 0.00 2.90
146 147 2.763215 GTGGGTGGGAAGGCATCA 59.237 61.111 0.00 0.00 0.00 3.07
147 148 2.043953 GGTGGGTGGGAAGGCATC 60.044 66.667 0.00 0.00 0.00 3.91
148 149 3.672503 GGGTGGGTGGGAAGGCAT 61.673 66.667 0.00 0.00 0.00 4.40
150 151 4.366684 CTGGGTGGGTGGGAAGGC 62.367 72.222 0.00 0.00 0.00 4.35
151 152 3.661648 CCTGGGTGGGTGGGAAGG 61.662 72.222 0.00 0.00 0.00 3.46
152 153 2.426305 GAACCTGGGTGGGTGGGAAG 62.426 65.000 0.00 0.00 39.85 3.46
153 154 2.370403 AACCTGGGTGGGTGGGAA 60.370 61.111 0.00 0.00 39.85 3.97
154 155 2.856988 GAACCTGGGTGGGTGGGA 60.857 66.667 0.00 0.00 39.85 4.37
155 156 2.713531 CTTGAACCTGGGTGGGTGGG 62.714 65.000 0.00 0.00 39.85 4.61
156 157 1.228552 CTTGAACCTGGGTGGGTGG 60.229 63.158 0.00 0.00 39.85 4.61
157 158 1.228552 CCTTGAACCTGGGTGGGTG 60.229 63.158 0.00 0.00 39.85 4.61
158 159 3.146828 GCCTTGAACCTGGGTGGGT 62.147 63.158 0.00 0.00 42.05 4.51
159 160 2.283173 GCCTTGAACCTGGGTGGG 60.283 66.667 0.00 0.00 41.11 4.61
160 161 1.077265 ATGCCTTGAACCTGGGTGG 59.923 57.895 0.00 0.00 42.93 4.61
161 162 1.252904 CCATGCCTTGAACCTGGGTG 61.253 60.000 0.00 0.00 0.00 4.61
162 163 1.077265 CCATGCCTTGAACCTGGGT 59.923 57.895 0.00 0.00 0.00 4.51
163 164 0.331278 TACCATGCCTTGAACCTGGG 59.669 55.000 0.00 0.00 0.00 4.45
164 165 1.004745 AGTACCATGCCTTGAACCTGG 59.995 52.381 0.00 0.00 0.00 4.45
165 166 2.489329 CAAGTACCATGCCTTGAACCTG 59.511 50.000 10.72 0.00 40.36 4.00
166 167 2.795329 CAAGTACCATGCCTTGAACCT 58.205 47.619 10.72 0.00 40.36 3.50
167 168 1.202348 GCAAGTACCATGCCTTGAACC 59.798 52.381 17.22 2.20 40.36 3.62
168 169 1.885887 TGCAAGTACCATGCCTTGAAC 59.114 47.619 16.17 5.82 43.16 3.18
169 170 2.284754 TGCAAGTACCATGCCTTGAA 57.715 45.000 16.17 7.93 43.16 2.69
170 171 2.284754 TTGCAAGTACCATGCCTTGA 57.715 45.000 16.17 0.00 43.16 3.02
171 172 3.598019 AATTGCAAGTACCATGCCTTG 57.402 42.857 16.17 11.51 43.16 3.61
172 173 3.306919 CCAAATTGCAAGTACCATGCCTT 60.307 43.478 16.17 8.78 43.16 4.35
173 174 2.234414 CCAAATTGCAAGTACCATGCCT 59.766 45.455 16.17 3.91 43.16 4.75
174 175 2.620242 CCAAATTGCAAGTACCATGCC 58.380 47.619 16.17 2.49 43.16 4.40
175 176 2.028203 ACCCAAATTGCAAGTACCATGC 60.028 45.455 4.94 12.96 44.08 4.06
176 177 3.959535 ACCCAAATTGCAAGTACCATG 57.040 42.857 4.94 0.00 0.00 3.66
177 178 4.102367 ACAAACCCAAATTGCAAGTACCAT 59.898 37.500 4.94 0.00 0.00 3.55
178 179 3.452627 ACAAACCCAAATTGCAAGTACCA 59.547 39.130 4.94 0.00 0.00 3.25
179 180 4.066646 ACAAACCCAAATTGCAAGTACC 57.933 40.909 4.94 0.00 0.00 3.34
180 181 4.260579 GCAACAAACCCAAATTGCAAGTAC 60.261 41.667 4.94 0.00 45.38 2.73
181 182 3.873952 GCAACAAACCCAAATTGCAAGTA 59.126 39.130 4.94 0.00 45.38 2.24
182 183 2.682352 GCAACAAACCCAAATTGCAAGT 59.318 40.909 4.94 0.00 45.38 3.16
183 184 3.337301 GCAACAAACCCAAATTGCAAG 57.663 42.857 4.94 0.00 45.38 4.01
186 187 1.333308 GGTGCAACAAACCCAAATTGC 59.667 47.619 0.00 0.94 46.08 3.56
187 188 2.636830 TGGTGCAACAAACCCAAATTG 58.363 42.857 0.00 0.00 39.98 2.32
188 189 3.356529 TTGGTGCAACAAACCCAAATT 57.643 38.095 16.46 0.00 39.98 1.82
189 190 3.574354 ATTGGTGCAACAAACCCAAAT 57.426 38.095 23.14 0.00 40.16 2.32
190 191 3.356529 AATTGGTGCAACAAACCCAAA 57.643 38.095 23.14 0.00 40.16 3.28
191 192 4.696479 ATAATTGGTGCAACAAACCCAA 57.304 36.364 23.14 14.03 39.98 4.12
192 193 6.169094 CAATATAATTGGTGCAACAAACCCA 58.831 36.000 23.14 7.96 39.98 4.51
193 194 6.169800 ACAATATAATTGGTGCAACAAACCC 58.830 36.000 23.14 0.66 39.98 4.11
194 195 7.491048 CCTACAATATAATTGGTGCAACAAACC 59.509 37.037 23.14 1.54 39.98 3.27
195 196 7.491048 CCCTACAATATAATTGGTGCAACAAAC 59.509 37.037 23.14 0.00 39.98 2.93
196 197 7.364232 CCCCTACAATATAATTGGTGCAACAAA 60.364 37.037 23.14 6.25 39.98 2.83
197 198 6.097554 CCCCTACAATATAATTGGTGCAACAA 59.902 38.462 21.46 21.46 39.98 2.83
198 199 5.596361 CCCCTACAATATAATTGGTGCAACA 59.404 40.000 0.00 0.00 39.98 3.33
199 200 5.010617 CCCCCTACAATATAATTGGTGCAAC 59.989 44.000 0.00 0.00 0.00 4.17
200 201 5.144100 CCCCCTACAATATAATTGGTGCAA 58.856 41.667 4.78 0.00 0.00 4.08
201 202 4.169068 ACCCCCTACAATATAATTGGTGCA 59.831 41.667 4.78 0.00 0.00 4.57
202 203 4.736473 ACCCCCTACAATATAATTGGTGC 58.264 43.478 4.78 0.00 0.00 5.01
203 204 5.773176 GGAACCCCCTACAATATAATTGGTG 59.227 44.000 4.78 0.00 0.00 4.17
204 205 5.960704 GGAACCCCCTACAATATAATTGGT 58.039 41.667 4.78 0.00 0.00 3.67
219 220 6.627612 CAGAAAGACTGTAAGGGAACCCCC 62.628 54.167 6.23 0.00 45.84 5.40
220 221 3.559384 CAGAAAGACTGTAAGGGAACCCC 60.559 52.174 6.23 0.00 45.84 4.95
221 222 3.676093 CAGAAAGACTGTAAGGGAACCC 58.324 50.000 0.94 0.94 45.84 4.11
247 248 3.134985 ACGGGCCAAACATTTACCTTTTT 59.865 39.130 4.39 0.00 0.00 1.94
248 249 2.701423 ACGGGCCAAACATTTACCTTTT 59.299 40.909 4.39 0.00 0.00 2.27
249 250 2.036604 CACGGGCCAAACATTTACCTTT 59.963 45.455 4.39 0.00 0.00 3.11
250 251 1.616374 CACGGGCCAAACATTTACCTT 59.384 47.619 4.39 0.00 0.00 3.50
251 252 1.202952 TCACGGGCCAAACATTTACCT 60.203 47.619 4.39 0.00 0.00 3.08
252 253 1.249407 TCACGGGCCAAACATTTACC 58.751 50.000 4.39 0.00 0.00 2.85
253 254 2.352323 CCTTCACGGGCCAAACATTTAC 60.352 50.000 4.39 0.00 0.00 2.01
254 255 1.889829 CCTTCACGGGCCAAACATTTA 59.110 47.619 4.39 0.00 0.00 1.40
255 256 0.678950 CCTTCACGGGCCAAACATTT 59.321 50.000 4.39 0.00 0.00 2.32
256 257 0.178975 TCCTTCACGGGCCAAACATT 60.179 50.000 4.39 0.00 0.00 2.71
257 258 0.039618 ATCCTTCACGGGCCAAACAT 59.960 50.000 4.39 0.00 0.00 2.71
258 259 0.178975 AATCCTTCACGGGCCAAACA 60.179 50.000 4.39 0.00 0.00 2.83
259 260 0.526211 GAATCCTTCACGGGCCAAAC 59.474 55.000 4.39 0.00 0.00 2.93
260 261 0.610785 GGAATCCTTCACGGGCCAAA 60.611 55.000 4.39 0.00 0.00 3.28
261 262 1.001393 GGAATCCTTCACGGGCCAA 60.001 57.895 4.39 0.00 0.00 4.52
262 263 1.497309 AAGGAATCCTTCACGGGCCA 61.497 55.000 9.08 0.00 40.17 5.36
263 264 1.032114 CAAGGAATCCTTCACGGGCC 61.032 60.000 12.35 0.00 42.67 5.80
264 265 0.322546 ACAAGGAATCCTTCACGGGC 60.323 55.000 12.35 0.00 42.67 6.13
274 275 3.120511 GCGTTCAAGACTGACAAGGAATC 60.121 47.826 0.00 0.00 0.00 2.52
286 287 2.083774 TGATCCCATTGCGTTCAAGAC 58.916 47.619 0.00 0.00 35.37 3.01
379 380 1.140452 TGCAGCCATCAGAGGAGATTC 59.860 52.381 0.00 0.00 0.00 2.52
380 381 1.210538 TGCAGCCATCAGAGGAGATT 58.789 50.000 0.00 0.00 0.00 2.40
426 442 5.702670 AGAACATCTCAATCACATTTCACGT 59.297 36.000 0.00 0.00 0.00 4.49
436 452 6.547141 ACTGTTTCCAAAGAACATCTCAATCA 59.453 34.615 0.00 0.00 36.51 2.57
520 538 5.775195 TCTCTTCAGATCTTGACAGTTGGTA 59.225 40.000 0.00 0.00 34.94 3.25
560 578 1.501582 AGGCCTTGAGGGTAGATGTC 58.498 55.000 0.00 0.00 37.43 3.06
564 582 0.252103 ACGAAGGCCTTGAGGGTAGA 60.252 55.000 26.25 0.00 37.43 2.59
579 597 4.525576 CGATCCGGCGTCGACGAA 62.526 66.667 39.74 21.51 41.40 3.85
587 605 0.997226 CTATGACGTTCGATCCGGCG 60.997 60.000 0.00 0.00 35.65 6.46
595 613 3.464907 TCTCCTACCTCTATGACGTTCG 58.535 50.000 0.00 0.00 0.00 3.95
603 621 6.041523 GTCTTTTCAGCATCTCCTACCTCTAT 59.958 42.308 0.00 0.00 0.00 1.98
637 655 3.120338 GGTGGTGACGTGATTACATGTTG 60.120 47.826 2.30 0.00 44.92 3.33
662 680 1.204704 TGTTTCTCCAGCGACATCGAT 59.795 47.619 5.26 0.00 43.02 3.59
686 704 7.712204 TTCTTGGTTCTTGTTTTTCTTAGGT 57.288 32.000 0.00 0.00 0.00 3.08
701 719 4.033019 CGTCCTTTCGTTTTTCTTGGTTC 58.967 43.478 0.00 0.00 0.00 3.62
705 723 5.748592 AGAATCGTCCTTTCGTTTTTCTTG 58.251 37.500 0.00 0.00 0.00 3.02
715 733 2.418884 GGGAGTGGAGAATCGTCCTTTC 60.419 54.545 0.00 0.00 37.52 2.62
725 743 2.040278 CAATGACCAAGGGAGTGGAGAA 59.960 50.000 0.00 0.00 41.65 2.87
736 754 2.094258 CGGTGATTCGTCAATGACCAAG 59.906 50.000 7.91 0.00 44.41 3.61
790 809 1.376037 CGCCACAAAGTCTCCTCCC 60.376 63.158 0.00 0.00 0.00 4.30
819 838 5.678955 TTTCCTCTAAGCCTACCTTTCTC 57.321 43.478 0.00 0.00 34.95 2.87
847 866 2.364632 AGTGCTATGCATGGCGTAAAA 58.635 42.857 27.16 9.10 41.91 1.52
879 3773 7.202526 CGTAATGGTAATTTTCCAGCATTCAT 58.797 34.615 6.63 0.00 40.84 2.57
1073 3969 2.034066 CAACACCTCCATGGGCGT 59.966 61.111 13.02 5.28 41.11 5.68
1077 3973 3.803082 CGCGCAACACCTCCATGG 61.803 66.667 8.75 4.97 42.93 3.66
1401 4297 1.949525 TGACCAGAAACAGAAAGCAGC 59.050 47.619 0.00 0.00 0.00 5.25
1408 4304 5.598830 AGTCTAAAGAGTGACCAGAAACAGA 59.401 40.000 0.00 0.00 34.02 3.41
1409 4305 5.848406 AGTCTAAAGAGTGACCAGAAACAG 58.152 41.667 0.00 0.00 34.02 3.16
1410 4306 5.871396 AGTCTAAAGAGTGACCAGAAACA 57.129 39.130 0.00 0.00 34.02 2.83
1411 4307 7.208080 TGTAAGTCTAAAGAGTGACCAGAAAC 58.792 38.462 0.68 0.00 34.02 2.78
1412 4308 7.356089 TGTAAGTCTAAAGAGTGACCAGAAA 57.644 36.000 0.68 0.00 34.02 2.52
1413 4309 6.516860 GCTGTAAGTCTAAAGAGTGACCAGAA 60.517 42.308 10.50 0.00 35.30 3.02
1475 4373 3.325135 ACTCCCGTGACTGAAGATTCTTT 59.675 43.478 0.00 0.00 0.00 2.52
1552 4450 5.623824 GCATTGGCTGAATCTTGACAGATTT 60.624 40.000 0.00 0.00 42.26 2.17
1639 4662 9.832445 TTAGTCTTCAGTTACATTCTCTTTGTT 57.168 29.630 0.00 0.00 0.00 2.83
1695 4718 5.233225 TCAGAGACTCAAACATGTTAGCTG 58.767 41.667 12.39 6.97 0.00 4.24
1860 4883 5.513267 CCCCTAGTAAACTGACTGAAAAGCT 60.513 44.000 0.00 0.00 0.00 3.74
2190 5213 3.670627 GCTTTGACGCCAATCTGGTTTAG 60.671 47.826 0.00 0.00 40.46 1.85
2251 5277 6.816640 GTCATAAACTGTGAAGCATAGTGGTA 59.183 38.462 0.00 0.00 36.04 3.25
2286 5312 9.407380 TCCTGTGTATTCATTTATGTTGCTAAT 57.593 29.630 0.00 0.00 0.00 1.73
2534 5560 2.676121 CATGGGTCCTTGCGCCAA 60.676 61.111 4.18 0.00 0.00 4.52
2557 5583 2.924421 CTGGGAATTTAGAGACCAGCC 58.076 52.381 0.00 0.00 41.83 4.85
2561 5587 1.485066 TCCGCTGGGAATTTAGAGACC 59.515 52.381 0.00 0.00 40.15 3.85
2699 5725 5.065914 GCTTCCAATATCTCAGCATTACCA 58.934 41.667 0.00 0.00 0.00 3.25
2863 5889 0.609151 CCTGCAAATGATGGCAACCA 59.391 50.000 0.00 0.00 39.93 3.67
3107 6133 9.499585 GGTAAACTTTGAGACAAAACTTCTAAC 57.500 33.333 0.00 0.00 0.00 2.34
3385 6411 4.344679 AGTTTTTCCAGCATCATTTGGACA 59.655 37.500 0.00 0.00 42.93 4.02
3442 6468 6.354039 ACGAAACTGTAACGAAGAAACATT 57.646 33.333 12.07 0.00 0.00 2.71
3456 6482 5.844004 ACTTTCTGAGTGATACGAAACTGT 58.156 37.500 0.00 0.00 37.17 3.55
3493 6519 6.610830 TCCATATGCAAGGATTTAAACCACAT 59.389 34.615 0.00 10.17 0.00 3.21
3572 6598 4.718774 AGAGCTGAAACCCATAAGATCTGA 59.281 41.667 0.00 0.00 34.30 3.27
3573 6599 5.033589 AGAGCTGAAACCCATAAGATCTG 57.966 43.478 0.00 0.00 34.30 2.90
3833 6891 6.322712 ACCATGAGCCAAACAAAAACTACTTA 59.677 34.615 0.00 0.00 0.00 2.24
3838 6896 4.486125 AACCATGAGCCAAACAAAAACT 57.514 36.364 0.00 0.00 0.00 2.66
3845 6903 5.723295 ACAATGAATAACCATGAGCCAAAC 58.277 37.500 0.00 0.00 0.00 2.93
3856 6914 6.908825 TGTAGAAGCACAACAATGAATAACC 58.091 36.000 0.00 0.00 0.00 2.85
4092 7150 4.995124 ACTATACTTGTAAGCACGACCTG 58.005 43.478 0.00 0.00 0.00 4.00
4357 7417 2.273619 AGTTCCCTGCTCCAGATCTTT 58.726 47.619 0.00 0.00 32.44 2.52
4434 7494 4.696877 CACATGAAGGAGCACAGTTCAATA 59.303 41.667 0.00 0.00 34.02 1.90
4468 7531 3.019564 ACTCATTTTACAGAGCCATGGC 58.980 45.455 30.12 30.12 42.33 4.40
4567 7644 0.250553 AGAGGAGATCGAGGGCGTAG 60.251 60.000 0.00 0.00 38.98 3.51
4588 7665 6.780522 TCCTACAAAATTTAGAAAGGCCAGTT 59.219 34.615 5.01 0.00 0.00 3.16
4593 7670 6.516739 AGCTCCTACAAAATTTAGAAAGGC 57.483 37.500 0.00 0.00 0.00 4.35
4704 7781 6.806249 CCTTCTCTAGTATGAGCGATGATTTC 59.194 42.308 0.00 0.00 34.29 2.17
4713 7790 5.506649 GCACAGTACCTTCTCTAGTATGAGC 60.507 48.000 0.00 0.00 34.29 4.26
4733 7810 2.371841 AGTTGGTTACCAGATCAGCACA 59.628 45.455 3.65 0.00 33.81 4.57
4820 7929 0.951040 CACGTGGAAGGCCTTGAGAC 60.951 60.000 26.25 14.89 34.31 3.36
4840 7949 1.651737 TTGACCCCGATTCTCCTCAA 58.348 50.000 0.00 0.00 0.00 3.02
4920 8029 8.675504 TCTTGTACTCTTTATAGTGCAGTAGTC 58.324 37.037 7.45 0.00 42.02 2.59
4955 8064 3.804786 TTAACTCAACAGACACCGTGA 57.195 42.857 5.28 0.00 0.00 4.35
4977 8090 0.161446 CAAAGTCGCGCCAAAAATGC 59.839 50.000 0.00 0.00 0.00 3.56
4999 8113 0.108520 CATGTTCACCTGGCAATGGC 60.109 55.000 0.00 0.00 40.13 4.40
5119 8239 1.067669 TCTCCTCATCGAATTCTGCCG 59.932 52.381 3.52 0.00 0.00 5.69
5178 8298 2.223971 ACACACACTACCAGTACTGCAC 60.224 50.000 17.86 0.00 0.00 4.57
5179 8299 2.036387 ACACACACTACCAGTACTGCA 58.964 47.619 17.86 6.31 0.00 4.41
5180 8300 2.814280 ACACACACTACCAGTACTGC 57.186 50.000 17.86 0.00 0.00 4.40
5181 8301 5.113383 TGAAAACACACACTACCAGTACTG 58.887 41.667 16.34 16.34 0.00 2.74
5182 8302 5.105064 ACTGAAAACACACACTACCAGTACT 60.105 40.000 0.00 0.00 32.58 2.73
5183 8303 5.114081 ACTGAAAACACACACTACCAGTAC 58.886 41.667 0.00 0.00 32.58 2.73
5184 8304 5.105269 TGACTGAAAACACACACTACCAGTA 60.105 40.000 0.00 0.00 34.25 2.74
5185 8305 4.189231 GACTGAAAACACACACTACCAGT 58.811 43.478 0.00 0.00 36.47 4.00
5186 8306 4.188462 TGACTGAAAACACACACTACCAG 58.812 43.478 0.00 0.00 0.00 4.00
5187 8307 4.188462 CTGACTGAAAACACACACTACCA 58.812 43.478 0.00 0.00 0.00 3.25
5188 8308 3.560068 CCTGACTGAAAACACACACTACC 59.440 47.826 0.00 0.00 0.00 3.18
5220 8344 1.456923 GCTTTTGCATCAGCGGTTTTC 59.543 47.619 2.09 0.00 46.23 2.29
5260 8385 4.158764 GGAGTACATCACAGTCTACAAGCT 59.841 45.833 0.00 0.00 0.00 3.74
5261 8386 4.158764 AGGAGTACATCACAGTCTACAAGC 59.841 45.833 0.00 0.00 0.00 4.01
5281 8406 1.352017 TCCACTACTCCACGTGTAGGA 59.648 52.381 15.65 3.34 41.03 2.94
5282 8407 1.471684 GTCCACTACTCCACGTGTAGG 59.528 57.143 15.65 6.46 41.03 3.18
5296 8421 1.154093 CACGTACGCATCGTCCACT 60.154 57.895 16.72 0.00 41.54 4.00
5298 8423 2.505337 GCACGTACGCATCGTCCA 60.505 61.111 16.72 0.00 41.54 4.02
5347 8473 6.858993 GGTCATCTGACTCGATTATTCAGTAC 59.141 42.308 9.98 0.00 44.20 2.73
5464 8597 3.118592 TCACATGTACAGGTGTTGTGACA 60.119 43.478 32.61 14.61 42.97 3.58
5465 8598 3.462982 TCACATGTACAGGTGTTGTGAC 58.537 45.455 32.61 0.00 42.97 3.67
5466 8599 3.828875 TCACATGTACAGGTGTTGTGA 57.171 42.857 32.61 26.23 42.97 3.58
5548 8712 9.244292 AGTATCATCGTTGACATATATAGGTGT 57.756 33.333 4.47 0.00 33.85 4.16
5549 8713 9.508567 CAGTATCATCGTTGACATATATAGGTG 57.491 37.037 4.47 0.00 33.85 4.00
5550 8714 8.687242 CCAGTATCATCGTTGACATATATAGGT 58.313 37.037 0.00 0.00 33.85 3.08
5551 8715 8.687242 ACCAGTATCATCGTTGACATATATAGG 58.313 37.037 0.00 0.00 33.85 2.57
5552 8716 9.508567 CACCAGTATCATCGTTGACATATATAG 57.491 37.037 0.00 0.00 33.85 1.31
5553 8717 9.020731 ACACCAGTATCATCGTTGACATATATA 57.979 33.333 0.00 0.00 33.85 0.86
5554 8718 7.896811 ACACCAGTATCATCGTTGACATATAT 58.103 34.615 0.00 0.00 33.85 0.86
5555 8719 7.230712 AGACACCAGTATCATCGTTGACATATA 59.769 37.037 0.00 0.00 33.85 0.86
5558 8722 4.160439 AGACACCAGTATCATCGTTGACAT 59.840 41.667 0.00 0.00 33.85 3.06
5571 8735 1.618837 GACCAGCAGAAGACACCAGTA 59.381 52.381 0.00 0.00 0.00 2.74
5573 8737 0.668706 CGACCAGCAGAAGACACCAG 60.669 60.000 0.00 0.00 0.00 4.00
5578 8742 0.032130 TCACACGACCAGCAGAAGAC 59.968 55.000 0.00 0.00 0.00 3.01
5581 8745 1.295792 GTTTCACACGACCAGCAGAA 58.704 50.000 0.00 0.00 0.00 3.02
5582 8746 0.176910 TGTTTCACACGACCAGCAGA 59.823 50.000 0.00 0.00 0.00 4.26
5583 8747 1.229428 ATGTTTCACACGACCAGCAG 58.771 50.000 0.00 0.00 0.00 4.24
5586 8750 1.724623 CCGTATGTTTCACACGACCAG 59.275 52.381 2.15 0.00 37.89 4.00
5587 8751 1.605968 CCCGTATGTTTCACACGACCA 60.606 52.381 2.15 0.00 37.89 4.02
5588 8752 1.073177 CCCGTATGTTTCACACGACC 58.927 55.000 2.15 0.00 37.89 4.79
5591 8755 1.009903 TCGCCCGTATGTTTCACACG 61.010 55.000 0.00 0.00 35.50 4.49
5592 8756 1.365699 ATCGCCCGTATGTTTCACAC 58.634 50.000 0.00 0.00 0.00 3.82
5593 8757 2.963548 TATCGCCCGTATGTTTCACA 57.036 45.000 0.00 0.00 0.00 3.58
5594 8758 4.034742 ACAAATATCGCCCGTATGTTTCAC 59.965 41.667 0.00 0.00 0.00 3.18
5595 8759 4.193090 ACAAATATCGCCCGTATGTTTCA 58.807 39.130 0.00 0.00 0.00 2.69
5596 8760 4.271533 TGACAAATATCGCCCGTATGTTTC 59.728 41.667 0.00 0.00 0.00 2.78
5626 8790 2.575532 AGACTAGCAGCAGCAAAAACA 58.424 42.857 3.17 0.00 45.49 2.83
5627 8791 3.559504 GAAGACTAGCAGCAGCAAAAAC 58.440 45.455 3.17 0.00 45.49 2.43
5629 8793 1.800586 CGAAGACTAGCAGCAGCAAAA 59.199 47.619 3.17 0.00 45.49 2.44
5685 8851 4.019501 GCTCATGACCCATTAGAGATGGAT 60.020 45.833 6.62 0.00 41.64 3.41
5686 8852 3.326006 GCTCATGACCCATTAGAGATGGA 59.674 47.826 6.62 0.00 41.64 3.41
5687 8853 3.558746 GGCTCATGACCCATTAGAGATGG 60.559 52.174 1.90 0.00 38.88 3.51
5688 8854 3.327172 AGGCTCATGACCCATTAGAGATG 59.673 47.826 9.75 0.00 0.00 2.90
5689 8855 3.582208 GAGGCTCATGACCCATTAGAGAT 59.418 47.826 10.25 0.00 0.00 2.75
5690 8856 2.968574 GAGGCTCATGACCCATTAGAGA 59.031 50.000 10.25 0.00 0.00 3.10
5691 8857 2.038295 GGAGGCTCATGACCCATTAGAG 59.962 54.545 17.69 0.00 0.00 2.43
5692 8858 2.050144 GGAGGCTCATGACCCATTAGA 58.950 52.381 17.69 0.00 0.00 2.10
5693 8859 1.072965 GGGAGGCTCATGACCCATTAG 59.927 57.143 17.69 0.00 41.72 1.73
5694 8860 1.140312 GGGAGGCTCATGACCCATTA 58.860 55.000 17.69 0.00 41.72 1.90
5695 8861 1.649271 GGGGAGGCTCATGACCCATT 61.649 60.000 17.69 0.00 43.67 3.16
5696 8862 2.081161 GGGGAGGCTCATGACCCAT 61.081 63.158 17.69 0.00 43.67 4.00
5698 8864 3.866582 CGGGGAGGCTCATGACCC 61.867 72.222 17.69 15.93 41.41 4.46
5699 8865 2.595009 GAACGGGGAGGCTCATGACC 62.595 65.000 17.69 11.29 0.00 4.02
5700 8866 1.153349 GAACGGGGAGGCTCATGAC 60.153 63.158 17.69 3.06 0.00 3.06
5703 8873 2.670148 GGTGAACGGGGAGGCTCAT 61.670 63.158 17.69 0.00 0.00 2.90
5721 8893 3.879682 CATCCATGCCGTGCCGTG 61.880 66.667 0.00 0.00 0.00 4.94
5739 8911 2.344981 TGCTGGTGCATGCATCCAC 61.345 57.895 27.60 23.26 45.31 4.02
5755 8934 0.028902 GTTGTCTTCGTTGGTGGTGC 59.971 55.000 0.00 0.00 0.00 5.01
5759 8938 0.307760 GCTGGTTGTCTTCGTTGGTG 59.692 55.000 0.00 0.00 0.00 4.17
5760 8939 0.818040 GGCTGGTTGTCTTCGTTGGT 60.818 55.000 0.00 0.00 0.00 3.67
5767 8946 2.113139 CGGTGGGCTGGTTGTCTT 59.887 61.111 0.00 0.00 0.00 3.01
5772 8951 4.643387 GTGCTCGGTGGGCTGGTT 62.643 66.667 0.00 0.00 0.00 3.67
5966 9193 1.890041 CGCCTCGGATCTCTCGTCT 60.890 63.158 0.00 0.00 0.00 4.18
6040 9272 2.960819 AGGCTCGCTTTTACTACTGTG 58.039 47.619 0.00 0.00 0.00 3.66
6041 9273 3.244112 ACAAGGCTCGCTTTTACTACTGT 60.244 43.478 0.00 0.00 0.00 3.55
6130 9388 2.968206 GGTCTTCGTACGCCCACT 59.032 61.111 11.24 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.