Multiple sequence alignment - TraesCS3D01G434100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G434100 chr3D 100.000 2978 0 0 1 2978 546704462 546707439 0.000000e+00 5500
1 TraesCS3D01G434100 chr3B 95.135 1665 44 17 560 2207 723795656 723797300 0.000000e+00 2591
2 TraesCS3D01G434100 chr3B 91.084 415 20 5 1 406 723795234 723795640 2.020000e-151 545
3 TraesCS3D01G434100 chr3B 81.553 309 43 8 38 339 167208228 167208529 2.970000e-60 243
4 TraesCS3D01G434100 chr3B 80.583 309 43 11 38 339 726149241 726149539 3.860000e-54 222
5 TraesCS3D01G434100 chr3A 94.655 1665 48 19 566 2207 683442015 683443661 0.000000e+00 2543
6 TraesCS3D01G434100 chr3A 92.176 409 21 2 1 406 683441343 683441743 4.310000e-158 568
7 TraesCS3D01G434100 chr3A 93.706 143 9 0 2209 2351 589833700 589833842 6.470000e-52 215
8 TraesCS3D01G434100 chr3A 90.551 127 11 1 2849 2975 683445097 683445222 1.840000e-37 167
9 TraesCS3D01G434100 chr3A 80.795 151 14 7 2350 2485 683445488 683445638 1.460000e-18 104
10 TraesCS3D01G434100 chr2A 95.804 143 6 0 2209 2351 142699874 142700016 6.420000e-57 231
11 TraesCS3D01G434100 chr2A 88.820 161 10 3 2198 2351 742155953 742155794 1.090000e-44 191
12 TraesCS3D01G434100 chr5A 95.105 143 7 0 2209 2351 640919886 640920028 2.990000e-55 226
13 TraesCS3D01G434100 chr5A 93.706 143 9 0 2209 2351 37144803 37144661 6.470000e-52 215
14 TraesCS3D01G434100 chr5D 94.406 143 8 0 2209 2351 148233696 148233554 1.390000e-53 220
15 TraesCS3D01G434100 chr5D 95.876 97 4 0 2754 2850 228447058 228446962 1.110000e-34 158
16 TraesCS3D01G434100 chr7B 95.000 140 6 1 408 546 508191348 508191487 5.000000e-53 219
17 TraesCS3D01G434100 chr7B 93.007 143 9 1 2209 2351 81409221 81409362 1.080000e-49 207
18 TraesCS3D01G434100 chr7B 93.007 143 8 2 409 550 445291240 445291381 1.080000e-49 207
19 TraesCS3D01G434100 chr7B 92.381 105 8 0 2747 2851 134634114 134634218 1.850000e-32 150
20 TraesCS3D01G434100 chr7B 91.667 108 9 0 2744 2851 562993172 562993065 1.850000e-32 150
21 TraesCS3D01G434100 chr4D 94.964 139 6 1 409 546 469431039 469430901 1.800000e-52 217
22 TraesCS3D01G434100 chr2D 93.197 147 9 1 402 547 602111490 602111636 6.470000e-52 215
23 TraesCS3D01G434100 chr2D 93.197 147 9 1 402 547 602137688 602137834 6.470000e-52 215
24 TraesCS3D01G434100 chr2D 92.517 147 10 1 402 547 602084173 602084319 3.010000e-50 209
25 TraesCS3D01G434100 chr2D 92.517 147 10 1 402 547 602181877 602182023 3.010000e-50 209
26 TraesCS3D01G434100 chr2B 93.706 143 8 1 408 549 288972060 288971918 2.330000e-51 213
27 TraesCS3D01G434100 chr2B 94.245 139 7 1 409 546 77912399 77912261 8.360000e-51 211
28 TraesCS3D01G434100 chr2B 88.333 120 13 1 2747 2866 674034046 674033928 3.090000e-30 143
29 TraesCS3D01G434100 chr7A 93.007 143 10 0 2209 2351 461930571 461930429 3.010000e-50 209
30 TraesCS3D01G434100 chr6A 92.308 143 11 0 2209 2351 603075310 603075452 1.400000e-48 204
31 TraesCS3D01G434100 chr6A 91.667 108 7 1 2747 2854 131446674 131446779 6.650000e-32 148
32 TraesCS3D01G434100 chr6B 95.876 97 4 0 2754 2850 276558772 276558676 1.110000e-34 158
33 TraesCS3D01G434100 chr6D 93.269 104 6 1 2748 2850 200398707 200398810 5.140000e-33 152
34 TraesCS3D01G434100 chr7D 89.831 118 10 2 2737 2853 261820133 261820249 1.850000e-32 150
35 TraesCS3D01G434100 chr1B 91.743 109 8 1 2747 2854 614972636 614972528 1.850000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G434100 chr3D 546704462 546707439 2977 False 5500.0 5500 100.00000 1 2978 1 chr3D.!!$F1 2977
1 TraesCS3D01G434100 chr3B 723795234 723797300 2066 False 1568.0 2591 93.10950 1 2207 2 chr3B.!!$F3 2206
2 TraesCS3D01G434100 chr3A 683441343 683445638 4295 False 845.5 2543 89.54425 1 2975 4 chr3A.!!$F2 2974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 478 0.03563 GGATCTGCAGAGCACCTGTT 60.036 55.0 31.24 8.15 44.71 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2333 2619 0.039035 AATTAGGCCCCGTTCAGCAA 59.961 50.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.655963 TCTTCTGTTCTGGATTTTGGAGG 58.344 43.478 0.00 0.00 0.00 4.30
61 65 9.051259 AGTATATGTAGTATTGGGAGCATGAAT 57.949 33.333 0.00 0.00 0.00 2.57
99 103 6.478512 TGTGTATATGACAAGCAGGACATA 57.521 37.500 0.00 0.00 40.66 2.29
105 109 4.406648 TGACAAGCAGGACATACTATGG 57.593 45.455 1.11 0.00 33.60 2.74
142 146 2.156891 GCGCGTTCTCATTTTGTGTAGA 59.843 45.455 8.43 0.00 0.00 2.59
253 266 8.862325 TTTGTGAACAACTGATCCATATAAGT 57.138 30.769 0.00 0.00 35.28 2.24
271 284 3.560636 AGTGATGGAAGGATTAACCGG 57.439 47.619 0.00 0.00 44.74 5.28
275 288 4.100498 GTGATGGAAGGATTAACCGGTCTA 59.900 45.833 8.04 0.00 44.74 2.59
297 310 9.774742 GTCTATTGACATTTTTATGTGTTCCTC 57.225 33.333 2.19 0.00 42.48 3.71
358 371 8.405531 GCATATTACACATAATTTGGTGTGAGT 58.594 33.333 19.33 10.72 46.87 3.41
359 372 9.720667 CATATTACACATAATTTGGTGTGAGTG 57.279 33.333 19.33 12.67 46.87 3.51
360 373 6.567687 TTACACATAATTTGGTGTGAGTGG 57.432 37.500 19.33 0.42 46.87 4.00
361 374 3.255642 ACACATAATTTGGTGTGAGTGGC 59.744 43.478 19.04 0.00 46.58 5.01
362 375 3.507233 CACATAATTTGGTGTGAGTGGCT 59.493 43.478 10.91 0.00 46.58 4.75
363 376 3.507233 ACATAATTTGGTGTGAGTGGCTG 59.493 43.478 0.00 0.00 0.00 4.85
364 377 2.363306 AATTTGGTGTGAGTGGCTGA 57.637 45.000 0.00 0.00 0.00 4.26
365 378 1.901591 ATTTGGTGTGAGTGGCTGAG 58.098 50.000 0.00 0.00 0.00 3.35
406 419 8.412608 TCAAAATTATGACAGAAGACGAGATC 57.587 34.615 0.00 0.00 0.00 2.75
407 420 8.253810 TCAAAATTATGACAGAAGACGAGATCT 58.746 33.333 0.00 0.00 40.46 2.75
408 421 9.521503 CAAAATTATGACAGAAGACGAGATCTA 57.478 33.333 0.00 0.00 36.27 1.98
409 422 9.743057 AAAATTATGACAGAAGACGAGATCTAG 57.257 33.333 0.00 0.00 36.27 2.43
410 423 6.869315 TTATGACAGAAGACGAGATCTAGG 57.131 41.667 7.79 0.00 36.27 3.02
411 424 3.546724 TGACAGAAGACGAGATCTAGGG 58.453 50.000 7.79 0.00 36.27 3.53
412 425 2.882137 GACAGAAGACGAGATCTAGGGG 59.118 54.545 7.79 0.00 36.27 4.79
413 426 1.611491 CAGAAGACGAGATCTAGGGGC 59.389 57.143 7.79 0.00 36.27 5.80
414 427 1.497286 AGAAGACGAGATCTAGGGGCT 59.503 52.381 7.79 0.00 36.27 5.19
415 428 1.611491 GAAGACGAGATCTAGGGGCTG 59.389 57.143 7.79 0.00 36.27 4.85
416 429 0.553819 AGACGAGATCTAGGGGCTGT 59.446 55.000 7.79 0.00 35.15 4.40
417 430 1.063567 AGACGAGATCTAGGGGCTGTT 60.064 52.381 7.79 0.00 35.15 3.16
418 431 1.338655 GACGAGATCTAGGGGCTGTTC 59.661 57.143 7.79 0.00 0.00 3.18
419 432 0.312416 CGAGATCTAGGGGCTGTTCG 59.688 60.000 0.00 0.00 0.00 3.95
420 433 0.676736 GAGATCTAGGGGCTGTTCGG 59.323 60.000 0.00 0.00 0.00 4.30
421 434 1.069935 GATCTAGGGGCTGTTCGGC 59.930 63.158 0.00 0.00 37.49 5.54
422 435 1.686325 GATCTAGGGGCTGTTCGGCA 61.686 60.000 5.97 0.00 40.61 5.69
423 436 1.271840 ATCTAGGGGCTGTTCGGCAA 61.272 55.000 5.97 0.00 40.61 4.52
424 437 1.224592 CTAGGGGCTGTTCGGCAAT 59.775 57.895 5.97 0.00 40.61 3.56
425 438 0.815615 CTAGGGGCTGTTCGGCAATC 60.816 60.000 5.97 0.00 40.61 2.67
426 439 2.265467 TAGGGGCTGTTCGGCAATCC 62.265 60.000 5.97 4.34 40.61 3.01
427 440 2.361104 GGGCTGTTCGGCAATCCA 60.361 61.111 5.97 0.00 40.61 3.41
428 441 2.700773 GGGCTGTTCGGCAATCCAC 61.701 63.158 5.97 0.00 40.61 4.02
429 442 1.675641 GGCTGTTCGGCAATCCACT 60.676 57.895 5.97 0.00 38.25 4.00
430 443 1.503542 GCTGTTCGGCAATCCACTG 59.496 57.895 0.00 0.00 0.00 3.66
431 444 1.503542 CTGTTCGGCAATCCACTGC 59.496 57.895 0.00 0.00 41.85 4.40
432 445 0.957395 CTGTTCGGCAATCCACTGCT 60.957 55.000 0.00 0.00 42.25 4.24
433 446 0.955428 TGTTCGGCAATCCACTGCTC 60.955 55.000 0.00 0.00 42.25 4.26
434 447 1.377202 TTCGGCAATCCACTGCTCC 60.377 57.895 0.00 0.00 42.25 4.70
435 448 2.819984 TTCGGCAATCCACTGCTCCC 62.820 60.000 0.00 0.00 42.25 4.30
436 449 2.679716 GGCAATCCACTGCTCCCT 59.320 61.111 0.00 0.00 42.25 4.20
437 450 1.751927 GGCAATCCACTGCTCCCTG 60.752 63.158 0.00 0.00 42.25 4.45
438 451 1.300963 GCAATCCACTGCTCCCTGA 59.699 57.895 0.00 0.00 39.34 3.86
439 452 0.322816 GCAATCCACTGCTCCCTGAA 60.323 55.000 0.00 0.00 39.34 3.02
440 453 1.887956 GCAATCCACTGCTCCCTGAAA 60.888 52.381 0.00 0.00 39.34 2.69
441 454 2.731572 CAATCCACTGCTCCCTGAAAT 58.268 47.619 0.00 0.00 0.00 2.17
442 455 3.094572 CAATCCACTGCTCCCTGAAATT 58.905 45.455 0.00 0.00 0.00 1.82
443 456 2.496899 TCCACTGCTCCCTGAAATTC 57.503 50.000 0.00 0.00 0.00 2.17
444 457 1.704628 TCCACTGCTCCCTGAAATTCA 59.295 47.619 0.00 0.00 0.00 2.57
445 458 2.108075 TCCACTGCTCCCTGAAATTCAA 59.892 45.455 0.00 0.00 0.00 2.69
446 459 2.490903 CCACTGCTCCCTGAAATTCAAG 59.509 50.000 0.00 0.00 0.00 3.02
447 460 2.490903 CACTGCTCCCTGAAATTCAAGG 59.509 50.000 4.27 4.27 29.12 3.61
448 461 2.376518 ACTGCTCCCTGAAATTCAAGGA 59.623 45.455 12.34 12.34 34.75 3.36
449 462 3.011032 ACTGCTCCCTGAAATTCAAGGAT 59.989 43.478 13.22 0.00 36.48 3.24
450 463 3.624777 TGCTCCCTGAAATTCAAGGATC 58.375 45.455 13.22 10.12 36.48 3.36
451 464 3.267812 TGCTCCCTGAAATTCAAGGATCT 59.732 43.478 13.22 0.00 36.48 2.75
452 465 3.631227 GCTCCCTGAAATTCAAGGATCTG 59.369 47.826 13.22 4.27 36.48 2.90
453 466 3.624777 TCCCTGAAATTCAAGGATCTGC 58.375 45.455 9.15 0.00 32.31 4.26
454 467 3.010472 TCCCTGAAATTCAAGGATCTGCA 59.990 43.478 9.15 0.00 32.31 4.41
455 468 3.380637 CCCTGAAATTCAAGGATCTGCAG 59.619 47.826 7.63 7.63 29.32 4.41
456 469 4.267536 CCTGAAATTCAAGGATCTGCAGA 58.732 43.478 20.79 20.79 0.00 4.26
457 470 4.335874 CCTGAAATTCAAGGATCTGCAGAG 59.664 45.833 22.96 8.09 0.00 3.35
458 471 3.693085 TGAAATTCAAGGATCTGCAGAGC 59.307 43.478 23.68 23.68 0.00 4.09
459 472 3.361281 AATTCAAGGATCTGCAGAGCA 57.639 42.857 31.24 12.67 36.92 4.26
460 473 2.105006 TTCAAGGATCTGCAGAGCAC 57.895 50.000 31.24 20.62 33.79 4.40
461 474 0.251354 TCAAGGATCTGCAGAGCACC 59.749 55.000 31.24 25.95 33.79 5.01
462 475 0.252479 CAAGGATCTGCAGAGCACCT 59.748 55.000 31.24 27.47 33.79 4.00
463 476 0.252479 AAGGATCTGCAGAGCACCTG 59.748 55.000 31.24 0.00 45.67 4.00
464 477 0.908656 AGGATCTGCAGAGCACCTGT 60.909 55.000 31.24 8.96 44.71 4.00
465 478 0.035630 GGATCTGCAGAGCACCTGTT 60.036 55.000 31.24 8.15 44.71 3.16
466 479 1.367659 GATCTGCAGAGCACCTGTTC 58.632 55.000 26.46 10.37 44.71 3.18
467 480 0.035630 ATCTGCAGAGCACCTGTTCC 60.036 55.000 22.96 0.00 44.71 3.62
468 481 1.673665 CTGCAGAGCACCTGTTCCC 60.674 63.158 8.42 0.00 44.71 3.97
469 482 2.360475 GCAGAGCACCTGTTCCCC 60.360 66.667 7.76 0.00 44.71 4.81
470 483 2.352805 CAGAGCACCTGTTCCCCC 59.647 66.667 0.00 0.00 38.10 5.40
471 484 3.322466 AGAGCACCTGTTCCCCCG 61.322 66.667 0.00 0.00 0.00 5.73
472 485 4.410400 GAGCACCTGTTCCCCCGG 62.410 72.222 0.00 0.00 0.00 5.73
474 487 4.717313 GCACCTGTTCCCCCGGTC 62.717 72.222 0.00 0.00 0.00 4.79
475 488 4.029809 CACCTGTTCCCCCGGTCC 62.030 72.222 0.00 0.00 0.00 4.46
478 491 2.039951 CTGTTCCCCCGGTCCCTA 59.960 66.667 0.00 0.00 0.00 3.53
479 492 2.284847 TGTTCCCCCGGTCCCTAC 60.285 66.667 0.00 0.00 0.00 3.18
480 493 2.040114 GTTCCCCCGGTCCCTACT 59.960 66.667 0.00 0.00 0.00 2.57
481 494 1.614525 GTTCCCCCGGTCCCTACTT 60.615 63.158 0.00 0.00 0.00 2.24
482 495 1.161598 TTCCCCCGGTCCCTACTTT 59.838 57.895 0.00 0.00 0.00 2.66
483 496 0.476219 TTCCCCCGGTCCCTACTTTT 60.476 55.000 0.00 0.00 0.00 2.27
484 497 0.476219 TCCCCCGGTCCCTACTTTTT 60.476 55.000 0.00 0.00 0.00 1.94
485 498 1.203415 TCCCCCGGTCCCTACTTTTTA 60.203 52.381 0.00 0.00 0.00 1.52
486 499 1.065199 CCCCCGGTCCCTACTTTTTAC 60.065 57.143 0.00 0.00 0.00 2.01
487 500 1.065199 CCCCGGTCCCTACTTTTTACC 60.065 57.143 0.00 0.00 0.00 2.85
488 501 1.911357 CCCGGTCCCTACTTTTTACCT 59.089 52.381 0.00 0.00 0.00 3.08
489 502 2.306805 CCCGGTCCCTACTTTTTACCTT 59.693 50.000 0.00 0.00 0.00 3.50
490 503 3.603532 CCGGTCCCTACTTTTTACCTTC 58.396 50.000 0.00 0.00 0.00 3.46
491 504 3.008266 CCGGTCCCTACTTTTTACCTTCA 59.992 47.826 0.00 0.00 0.00 3.02
492 505 4.251268 CGGTCCCTACTTTTTACCTTCAG 58.749 47.826 0.00 0.00 0.00 3.02
493 506 4.008330 GGTCCCTACTTTTTACCTTCAGC 58.992 47.826 0.00 0.00 0.00 4.26
494 507 4.263374 GGTCCCTACTTTTTACCTTCAGCT 60.263 45.833 0.00 0.00 0.00 4.24
495 508 4.936411 GTCCCTACTTTTTACCTTCAGCTC 59.064 45.833 0.00 0.00 0.00 4.09
496 509 4.019591 TCCCTACTTTTTACCTTCAGCTCC 60.020 45.833 0.00 0.00 0.00 4.70
497 510 3.933332 CCTACTTTTTACCTTCAGCTCCG 59.067 47.826 0.00 0.00 0.00 4.63
498 511 2.152016 ACTTTTTACCTTCAGCTCCGC 58.848 47.619 0.00 0.00 0.00 5.54
499 512 1.468914 CTTTTTACCTTCAGCTCCGCC 59.531 52.381 0.00 0.00 0.00 6.13
500 513 0.398696 TTTTACCTTCAGCTCCGCCA 59.601 50.000 0.00 0.00 0.00 5.69
501 514 0.398696 TTTACCTTCAGCTCCGCCAA 59.601 50.000 0.00 0.00 0.00 4.52
502 515 0.321298 TTACCTTCAGCTCCGCCAAC 60.321 55.000 0.00 0.00 0.00 3.77
503 516 2.180159 TACCTTCAGCTCCGCCAACC 62.180 60.000 0.00 0.00 0.00 3.77
504 517 2.747855 CTTCAGCTCCGCCAACCC 60.748 66.667 0.00 0.00 0.00 4.11
505 518 4.344865 TTCAGCTCCGCCAACCCC 62.345 66.667 0.00 0.00 0.00 4.95
515 528 4.101448 CCAACCCCGGGAGCAGAG 62.101 72.222 26.32 6.29 0.00 3.35
516 529 4.785453 CAACCCCGGGAGCAGAGC 62.785 72.222 26.32 0.00 0.00 4.09
522 535 4.504916 CGGGAGCAGAGCGTGGAG 62.505 72.222 0.00 0.00 0.00 3.86
523 536 3.386237 GGGAGCAGAGCGTGGAGT 61.386 66.667 0.00 0.00 0.00 3.85
524 537 2.183046 GGAGCAGAGCGTGGAGTC 59.817 66.667 0.00 0.00 0.00 3.36
525 538 2.202544 GAGCAGAGCGTGGAGTCG 60.203 66.667 0.00 0.00 0.00 4.18
526 539 3.691744 GAGCAGAGCGTGGAGTCGG 62.692 68.421 0.00 0.00 0.00 4.79
527 540 3.749064 GCAGAGCGTGGAGTCGGA 61.749 66.667 0.00 0.00 0.00 4.55
528 541 2.487428 CAGAGCGTGGAGTCGGAG 59.513 66.667 0.00 0.00 0.00 4.63
529 542 2.752238 AGAGCGTGGAGTCGGAGG 60.752 66.667 0.00 0.00 0.00 4.30
530 543 3.827898 GAGCGTGGAGTCGGAGGG 61.828 72.222 0.00 0.00 0.00 4.30
531 544 4.361971 AGCGTGGAGTCGGAGGGA 62.362 66.667 0.00 0.00 0.00 4.20
532 545 3.148279 GCGTGGAGTCGGAGGGAT 61.148 66.667 0.00 0.00 0.00 3.85
533 546 2.808315 CGTGGAGTCGGAGGGATG 59.192 66.667 0.00 0.00 0.00 3.51
534 547 2.501610 GTGGAGTCGGAGGGATGC 59.498 66.667 0.00 0.00 0.00 3.91
535 548 2.764128 TGGAGTCGGAGGGATGCC 60.764 66.667 0.00 0.00 0.00 4.40
542 555 2.190578 GGAGGGATGCCGAACAGG 59.809 66.667 0.00 0.00 44.97 4.00
555 568 2.678336 CCGAACAGGCCTCTAATTTGTC 59.322 50.000 0.00 0.00 0.00 3.18
556 569 3.334691 CGAACAGGCCTCTAATTTGTCA 58.665 45.455 0.00 0.00 0.00 3.58
562 575 5.192927 CAGGCCTCTAATTTGTCACCATAA 58.807 41.667 0.00 0.00 0.00 1.90
563 576 5.829924 CAGGCCTCTAATTTGTCACCATAAT 59.170 40.000 0.00 0.00 0.00 1.28
564 577 6.322201 CAGGCCTCTAATTTGTCACCATAATT 59.678 38.462 0.00 0.00 0.00 1.40
589 852 4.903054 TCATTCTGTCTGTCTCATTGCTT 58.097 39.130 0.00 0.00 0.00 3.91
605 868 0.893447 GCTTGAGAAATGCCAGCCTT 59.107 50.000 0.00 0.00 0.00 4.35
673 942 4.578601 CTGTCGAACAAATTAATCCTCGC 58.421 43.478 0.00 0.00 0.00 5.03
777 1046 5.934043 AGTTTAATTTCCTGCTGATTTTGGC 59.066 36.000 0.00 0.00 0.00 4.52
817 1086 8.714906 AGTGGTATGGCAGTAAATCTATTAACT 58.285 33.333 0.00 0.00 0.00 2.24
818 1087 9.338622 GTGGTATGGCAGTAAATCTATTAACTT 57.661 33.333 0.00 0.00 0.00 2.66
819 1088 9.914834 TGGTATGGCAGTAAATCTATTAACTTT 57.085 29.630 0.00 0.00 0.00 2.66
978 1248 2.818132 CGTGCCCATCCTCTCCTC 59.182 66.667 0.00 0.00 0.00 3.71
979 1249 2.801631 CGTGCCCATCCTCTCCTCC 61.802 68.421 0.00 0.00 0.00 4.30
1401 1677 2.823147 CGGGAGGTCTACGACGCT 60.823 66.667 0.00 0.00 32.65 5.07
1525 1810 4.323477 AAGGTAAGCGCCGCCACA 62.323 61.111 4.98 0.00 0.00 4.17
1538 1823 1.436195 CGCCACACCCATACATTCGG 61.436 60.000 0.00 0.00 0.00 4.30
1543 1828 0.461163 CACCCATACATTCGGACGCA 60.461 55.000 0.00 0.00 0.00 5.24
1544 1829 0.461339 ACCCATACATTCGGACGCAC 60.461 55.000 0.00 0.00 0.00 5.34
1545 1830 1.487452 CCCATACATTCGGACGCACG 61.487 60.000 0.00 0.00 0.00 5.34
1546 1831 0.804544 CCATACATTCGGACGCACGT 60.805 55.000 0.00 0.00 34.94 4.49
1547 1832 1.534385 CCATACATTCGGACGCACGTA 60.534 52.381 0.00 0.00 34.94 3.57
1548 1833 1.515631 CATACATTCGGACGCACGTAC 59.484 52.381 0.00 0.00 34.94 3.67
1549 1834 0.804364 TACATTCGGACGCACGTACT 59.196 50.000 3.60 0.00 34.94 2.73
1551 1836 1.226211 ATTCGGACGCACGTACTCG 60.226 57.895 3.60 5.44 43.34 4.18
1552 1837 3.933900 TTCGGACGCACGTACTCGC 62.934 63.158 3.60 0.00 41.18 5.03
1553 1838 4.456253 CGGACGCACGTACTCGCT 62.456 66.667 3.60 0.00 41.18 4.93
1554 1839 2.787249 GGACGCACGTACTCGCTA 59.213 61.111 0.00 0.00 41.18 4.26
1555 1840 1.582168 GGACGCACGTACTCGCTAC 60.582 63.158 0.00 0.00 41.18 3.58
1556 1841 1.423056 GACGCACGTACTCGCTACT 59.577 57.895 0.00 0.00 41.18 2.57
1580 1865 2.268298 CCACTTGCCACGTACTCATAC 58.732 52.381 0.00 0.00 0.00 2.39
1707 1992 1.737008 GGCGTCGGACAAGAACTCC 60.737 63.158 9.10 0.00 0.00 3.85
2006 2291 1.065701 CCGGATGAATTCTCGTCGTCT 59.934 52.381 7.05 0.00 38.33 4.18
2007 2292 2.376956 CGGATGAATTCTCGTCGTCTC 58.623 52.381 7.05 0.00 38.33 3.36
2008 2293 2.376956 GGATGAATTCTCGTCGTCTCG 58.623 52.381 7.05 0.00 38.33 4.04
2160 2446 7.009179 TCTCTAGTTGTTCCTGATGTGAATT 57.991 36.000 0.00 0.00 0.00 2.17
2208 2494 9.685276 ATGGAATAATGTTTGTTGTCTAGATCA 57.315 29.630 0.00 0.00 0.00 2.92
2209 2495 9.513906 TGGAATAATGTTTGTTGTCTAGATCAA 57.486 29.630 0.00 0.00 0.00 2.57
2210 2496 9.994432 GGAATAATGTTTGTTGTCTAGATCAAG 57.006 33.333 0.00 0.00 0.00 3.02
2211 2497 9.994432 GAATAATGTTTGTTGTCTAGATCAAGG 57.006 33.333 0.00 0.00 0.00 3.61
2212 2498 5.886960 ATGTTTGTTGTCTAGATCAAGGC 57.113 39.130 0.00 1.63 0.00 4.35
2213 2499 4.072131 TGTTTGTTGTCTAGATCAAGGCC 58.928 43.478 0.00 0.00 0.00 5.19
2214 2500 3.350219 TTGTTGTCTAGATCAAGGCCC 57.650 47.619 0.00 0.00 0.00 5.80
2215 2501 1.559682 TGTTGTCTAGATCAAGGCCCC 59.440 52.381 0.00 0.00 0.00 5.80
2216 2502 0.830648 TTGTCTAGATCAAGGCCCCG 59.169 55.000 0.00 0.00 0.00 5.73
2217 2503 0.325296 TGTCTAGATCAAGGCCCCGT 60.325 55.000 0.00 0.00 0.00 5.28
2218 2504 0.831307 GTCTAGATCAAGGCCCCGTT 59.169 55.000 0.00 0.00 0.00 4.44
2219 2505 1.120530 TCTAGATCAAGGCCCCGTTC 58.879 55.000 0.00 0.00 0.00 3.95
2220 2506 0.249489 CTAGATCAAGGCCCCGTTCG 60.249 60.000 0.00 0.00 0.00 3.95
2221 2507 1.682451 TAGATCAAGGCCCCGTTCGG 61.682 60.000 0.00 4.08 0.00 4.30
2222 2508 3.325201 GATCAAGGCCCCGTTCGGT 62.325 63.158 0.00 0.00 0.00 4.69
2223 2509 3.622060 ATCAAGGCCCCGTTCGGTG 62.622 63.158 0.00 0.00 0.00 4.94
2224 2510 4.636435 CAAGGCCCCGTTCGGTGT 62.636 66.667 0.00 0.00 0.00 4.16
2225 2511 4.324991 AAGGCCCCGTTCGGTGTC 62.325 66.667 0.00 0.00 0.00 3.67
2228 2514 4.404098 GCCCCGTTCGGTGTCCAT 62.404 66.667 10.36 0.00 0.00 3.41
2229 2515 2.125269 CCCCGTTCGGTGTCCATC 60.125 66.667 10.36 0.00 0.00 3.51
2230 2516 2.125269 CCCGTTCGGTGTCCATCC 60.125 66.667 10.36 0.00 0.00 3.51
2232 2518 3.186047 CGTTCGGTGTCCATCCGC 61.186 66.667 0.00 0.00 46.49 5.54
2233 2519 2.264794 GTTCGGTGTCCATCCGCT 59.735 61.111 0.00 0.00 46.49 5.52
2234 2520 1.810030 GTTCGGTGTCCATCCGCTC 60.810 63.158 0.00 0.00 46.49 5.03
2235 2521 3.014085 TTCGGTGTCCATCCGCTCC 62.014 63.158 0.00 0.00 46.49 4.70
2236 2522 3.770040 CGGTGTCCATCCGCTCCA 61.770 66.667 0.00 0.00 41.48 3.86
2237 2523 2.125106 GGTGTCCATCCGCTCCAC 60.125 66.667 0.00 0.00 0.00 4.02
2238 2524 2.660064 GGTGTCCATCCGCTCCACT 61.660 63.158 0.00 0.00 0.00 4.00
2239 2525 1.448540 GTGTCCATCCGCTCCACTG 60.449 63.158 0.00 0.00 0.00 3.66
2240 2526 2.512515 GTCCATCCGCTCCACTGC 60.513 66.667 0.00 0.00 0.00 4.40
2241 2527 2.685017 TCCATCCGCTCCACTGCT 60.685 61.111 0.00 0.00 0.00 4.24
2242 2528 2.202987 CCATCCGCTCCACTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
2243 2529 2.202987 CATCCGCTCCACTGCTCC 60.203 66.667 0.00 0.00 0.00 4.70
2244 2530 3.842923 ATCCGCTCCACTGCTCCG 61.843 66.667 0.00 0.00 0.00 4.63
2248 2534 4.828925 GCTCCACTGCTCCGCTCC 62.829 72.222 0.00 0.00 0.00 4.70
2249 2535 4.504916 CTCCACTGCTCCGCTCCG 62.505 72.222 0.00 0.00 0.00 4.63
2271 2557 4.007644 CGGACAGGGCTGCAGTGA 62.008 66.667 16.64 0.00 0.00 3.41
2272 2558 2.431683 GGACAGGGCTGCAGTGAA 59.568 61.111 16.64 0.00 0.00 3.18
2273 2559 1.228245 GGACAGGGCTGCAGTGAAA 60.228 57.895 16.64 0.00 0.00 2.69
2274 2560 0.823356 GGACAGGGCTGCAGTGAAAA 60.823 55.000 16.64 0.00 0.00 2.29
2275 2561 0.595095 GACAGGGCTGCAGTGAAAAG 59.405 55.000 16.64 3.66 0.00 2.27
2276 2562 0.106519 ACAGGGCTGCAGTGAAAAGT 60.107 50.000 16.64 4.30 0.00 2.66
2277 2563 0.595095 CAGGGCTGCAGTGAAAAGTC 59.405 55.000 16.64 0.00 0.00 3.01
2278 2564 0.475906 AGGGCTGCAGTGAAAAGTCT 59.524 50.000 16.64 0.00 0.00 3.24
2279 2565 1.133668 AGGGCTGCAGTGAAAAGTCTT 60.134 47.619 16.64 0.00 0.00 3.01
2280 2566 1.000938 GGGCTGCAGTGAAAAGTCTTG 60.001 52.381 16.64 0.00 0.00 3.02
2281 2567 1.949525 GGCTGCAGTGAAAAGTCTTGA 59.050 47.619 16.64 0.00 0.00 3.02
2282 2568 2.358898 GGCTGCAGTGAAAAGTCTTGAA 59.641 45.455 16.64 0.00 0.00 2.69
2283 2569 3.549625 GGCTGCAGTGAAAAGTCTTGAAG 60.550 47.826 16.64 0.00 0.00 3.02
2284 2570 3.625938 CTGCAGTGAAAAGTCTTGAAGC 58.374 45.455 5.25 0.00 0.00 3.86
2285 2571 2.032054 TGCAGTGAAAAGTCTTGAAGCG 59.968 45.455 0.00 0.00 0.00 4.68
2286 2572 2.603173 GCAGTGAAAAGTCTTGAAGCGG 60.603 50.000 0.00 0.00 0.00 5.52
2287 2573 2.031682 CAGTGAAAAGTCTTGAAGCGGG 60.032 50.000 0.00 0.00 0.00 6.13
2288 2574 0.951558 TGAAAAGTCTTGAAGCGGGC 59.048 50.000 0.00 0.00 0.00 6.13
2289 2575 0.110192 GAAAAGTCTTGAAGCGGGCG 60.110 55.000 0.00 0.00 0.00 6.13
2290 2576 0.534203 AAAAGTCTTGAAGCGGGCGA 60.534 50.000 0.00 0.00 0.00 5.54
2291 2577 0.534203 AAAGTCTTGAAGCGGGCGAA 60.534 50.000 0.00 0.00 0.00 4.70
2292 2578 0.534203 AAGTCTTGAAGCGGGCGAAA 60.534 50.000 0.00 0.00 0.00 3.46
2293 2579 1.206831 GTCTTGAAGCGGGCGAAAC 59.793 57.895 0.00 0.00 0.00 2.78
2294 2580 2.173382 CTTGAAGCGGGCGAAACG 59.827 61.111 0.00 0.00 0.00 3.60
2295 2581 2.280254 TTGAAGCGGGCGAAACGA 60.280 55.556 0.00 0.00 0.00 3.85
2296 2582 1.635663 CTTGAAGCGGGCGAAACGAT 61.636 55.000 0.00 0.00 0.00 3.73
2297 2583 1.906994 TTGAAGCGGGCGAAACGATG 61.907 55.000 0.00 0.00 0.00 3.84
2298 2584 3.718480 GAAGCGGGCGAAACGATGC 62.718 63.158 0.00 0.00 0.00 3.91
2299 2585 4.760047 AGCGGGCGAAACGATGCT 62.760 61.111 0.00 0.00 0.00 3.79
2300 2586 4.223964 GCGGGCGAAACGATGCTC 62.224 66.667 0.00 0.00 0.00 4.26
2301 2587 3.564027 CGGGCGAAACGATGCTCC 61.564 66.667 0.00 0.00 0.00 4.70
2302 2588 3.564027 GGGCGAAACGATGCTCCG 61.564 66.667 0.00 0.00 0.00 4.63
2303 2589 4.223964 GGCGAAACGATGCTCCGC 62.224 66.667 0.00 0.00 44.45 5.54
2304 2590 3.487202 GCGAAACGATGCTCCGCA 61.487 61.111 0.00 0.00 44.55 5.69
2305 2591 2.697425 CGAAACGATGCTCCGCAG 59.303 61.111 0.00 0.00 43.65 5.18
2306 2592 1.805539 CGAAACGATGCTCCGCAGA 60.806 57.895 0.00 0.00 43.65 4.26
2307 2593 1.148157 CGAAACGATGCTCCGCAGAT 61.148 55.000 0.00 0.00 43.65 2.90
2308 2594 0.579156 GAAACGATGCTCCGCAGATC 59.421 55.000 0.00 0.00 43.65 2.75
2309 2595 0.811616 AAACGATGCTCCGCAGATCC 60.812 55.000 0.00 0.00 43.65 3.36
2310 2596 2.732468 CGATGCTCCGCAGATCCG 60.732 66.667 0.00 0.00 43.65 4.18
2311 2597 3.040763 GATGCTCCGCAGATCCGC 61.041 66.667 0.00 0.00 43.65 5.54
2319 2605 4.124910 GCAGATCCGCGGATTTCA 57.875 55.556 39.14 14.71 34.60 2.69
2320 2606 2.393557 GCAGATCCGCGGATTTCAA 58.606 52.632 39.14 13.86 34.60 2.69
2321 2607 0.305922 GCAGATCCGCGGATTTCAAG 59.694 55.000 39.14 26.09 34.60 3.02
2322 2608 0.940126 CAGATCCGCGGATTTCAAGG 59.060 55.000 39.14 19.23 34.60 3.61
2323 2609 0.830648 AGATCCGCGGATTTCAAGGA 59.169 50.000 39.14 11.32 34.60 3.36
2324 2610 1.202580 AGATCCGCGGATTTCAAGGAG 60.203 52.381 39.14 2.85 34.60 3.69
2325 2611 0.815615 ATCCGCGGATTTCAAGGAGC 60.816 55.000 34.60 0.00 34.14 4.70
2326 2612 2.472909 CCGCGGATTTCAAGGAGCC 61.473 63.158 24.07 0.00 0.00 4.70
2327 2613 2.813179 CGCGGATTTCAAGGAGCCG 61.813 63.158 0.00 0.00 44.47 5.52
2328 2614 2.472909 GCGGATTTCAAGGAGCCGG 61.473 63.158 0.00 0.00 42.09 6.13
2329 2615 2.472909 CGGATTTCAAGGAGCCGGC 61.473 63.158 21.89 21.89 38.40 6.13
2330 2616 2.472909 GGATTTCAAGGAGCCGGCG 61.473 63.158 23.20 6.32 0.00 6.46
2331 2617 3.113386 GATTTCAAGGAGCCGGCGC 62.113 63.158 23.29 23.29 0.00 6.53
2332 2618 3.918253 ATTTCAAGGAGCCGGCGCA 62.918 57.895 31.51 10.50 37.52 6.09
2333 2619 3.918253 TTTCAAGGAGCCGGCGCAT 62.918 57.895 31.51 23.40 37.52 4.73
2334 2620 3.918253 TTCAAGGAGCCGGCGCATT 62.918 57.895 31.51 28.08 37.52 3.56
2335 2621 4.183686 CAAGGAGCCGGCGCATTG 62.184 66.667 35.99 35.99 37.52 2.82
2344 2630 4.481112 GGCGCATTGCTGAACGGG 62.481 66.667 10.83 0.00 45.43 5.28
2345 2631 4.481112 GCGCATTGCTGAACGGGG 62.481 66.667 0.30 0.00 41.73 5.73
2346 2632 4.481112 CGCATTGCTGAACGGGGC 62.481 66.667 7.12 0.00 0.00 5.80
2347 2633 4.133796 GCATTGCTGAACGGGGCC 62.134 66.667 0.16 0.00 0.00 5.80
2358 2644 0.702316 AACGGGGCCTAATTCCTTGT 59.298 50.000 0.84 0.00 0.00 3.16
2378 2664 8.063153 TCCTTGTAGGATGTACAACTAGGAATA 58.937 37.037 19.71 4.69 40.06 1.75
2380 2666 7.268199 TGTAGGATGTACAACTAGGAATACG 57.732 40.000 0.00 0.00 0.00 3.06
2397 2683 0.892755 ACGTCCAGGTAATCGCTCAA 59.107 50.000 0.00 0.00 0.00 3.02
2411 2697 2.233676 TCGCTCAAGCTGGATCAGTTAA 59.766 45.455 0.00 0.00 39.32 2.01
2424 2710 8.947115 GCTGGATCAGTTAACTAGTGTTATTTT 58.053 33.333 8.04 0.00 34.07 1.82
2496 2783 5.576563 TTCTCTATTTGTGTTGGGAGGAA 57.423 39.130 0.00 0.00 0.00 3.36
2526 3860 1.723542 CATGACTTGTGACGAGAGCAC 59.276 52.381 6.88 0.00 38.19 4.40
2532 3866 0.960861 TGTGACGAGAGCACGGAGAT 60.961 55.000 0.00 0.00 39.75 2.75
2534 3868 0.393132 TGACGAGAGCACGGAGATCT 60.393 55.000 0.00 0.00 37.61 2.75
2535 3869 0.736053 GACGAGAGCACGGAGATCTT 59.264 55.000 0.00 0.00 37.61 2.40
2541 3875 5.241949 ACGAGAGCACGGAGATCTTATAATT 59.758 40.000 0.00 0.00 37.61 1.40
2547 3881 3.244078 ACGGAGATCTTATAATTGGCGCA 60.244 43.478 10.83 0.00 0.00 6.09
2550 3884 5.446473 CGGAGATCTTATAATTGGCGCATTC 60.446 44.000 10.83 0.00 0.00 2.67
2595 3929 1.360192 GCAAATATGCGCAGGTCCC 59.640 57.895 18.32 0.00 43.83 4.46
2626 3960 2.436646 CGATTGCTCGCCCAGGTT 60.437 61.111 0.00 0.00 38.20 3.50
2627 3961 2.753966 CGATTGCTCGCCCAGGTTG 61.754 63.158 0.00 0.00 38.20 3.77
2628 3962 3.056313 GATTGCTCGCCCAGGTTGC 62.056 63.158 0.00 0.00 0.00 4.17
2629 3963 3.866379 ATTGCTCGCCCAGGTTGCA 62.866 57.895 0.00 0.00 0.00 4.08
2642 3976 0.465460 GGTTGCACCTGGTTGACTGA 60.465 55.000 0.00 0.00 34.73 3.41
2643 3977 1.609208 GTTGCACCTGGTTGACTGAT 58.391 50.000 0.00 0.00 0.00 2.90
2657 3991 3.804036 TGACTGATCAACCGTTGACTTT 58.196 40.909 16.15 0.68 43.48 2.66
2658 3992 4.196193 TGACTGATCAACCGTTGACTTTT 58.804 39.130 16.15 0.29 43.48 2.27
2659 3993 4.035091 TGACTGATCAACCGTTGACTTTTG 59.965 41.667 16.15 7.78 43.48 2.44
2660 3994 3.243068 ACTGATCAACCGTTGACTTTTGC 60.243 43.478 16.15 3.33 43.48 3.68
2662 3996 3.129462 TGATCAACCGTTGACTTTTGCAA 59.871 39.130 16.15 0.00 43.48 4.08
2663 3997 3.577649 TCAACCGTTGACTTTTGCAAA 57.422 38.095 8.05 8.05 34.08 3.68
2664 3998 3.914312 TCAACCGTTGACTTTTGCAAAA 58.086 36.364 22.61 22.61 34.08 2.44
2665 3999 3.675698 TCAACCGTTGACTTTTGCAAAAC 59.324 39.130 20.46 12.43 34.08 2.43
2666 4000 3.305398 ACCGTTGACTTTTGCAAAACA 57.695 38.095 20.46 14.86 0.00 2.83
2667 4001 3.654414 ACCGTTGACTTTTGCAAAACAA 58.346 36.364 20.46 19.45 36.13 2.83
2668 4002 4.058817 ACCGTTGACTTTTGCAAAACAAA 58.941 34.783 22.31 14.15 46.51 2.83
2669 4003 9.054969 TCAACCGTTGACTTTTGCAAAACAAAA 62.055 33.333 22.31 13.88 43.80 2.44
2771 4106 6.702716 AAAAATACTCACTCCGTTCCAAAA 57.297 33.333 0.00 0.00 0.00 2.44
2772 4107 6.894339 AAAATACTCACTCCGTTCCAAAAT 57.106 33.333 0.00 0.00 0.00 1.82
2773 4108 7.989416 AAAATACTCACTCCGTTCCAAAATA 57.011 32.000 0.00 0.00 0.00 1.40
2774 4109 7.989416 AAATACTCACTCCGTTCCAAAATAA 57.011 32.000 0.00 0.00 0.00 1.40
2775 4110 7.611213 AATACTCACTCCGTTCCAAAATAAG 57.389 36.000 0.00 0.00 0.00 1.73
2776 4111 4.969484 ACTCACTCCGTTCCAAAATAAGT 58.031 39.130 0.00 0.00 0.00 2.24
2777 4112 4.755123 ACTCACTCCGTTCCAAAATAAGTG 59.245 41.667 0.00 0.00 35.20 3.16
2778 4113 4.710324 TCACTCCGTTCCAAAATAAGTGT 58.290 39.130 0.00 0.00 35.37 3.55
2779 4114 4.753107 TCACTCCGTTCCAAAATAAGTGTC 59.247 41.667 0.00 0.00 35.37 3.67
2780 4115 4.755123 CACTCCGTTCCAAAATAAGTGTCT 59.245 41.667 0.00 0.00 0.00 3.41
2781 4116 4.995487 ACTCCGTTCCAAAATAAGTGTCTC 59.005 41.667 0.00 0.00 0.00 3.36
2782 4117 4.963373 TCCGTTCCAAAATAAGTGTCTCA 58.037 39.130 0.00 0.00 0.00 3.27
2783 4118 5.369833 TCCGTTCCAAAATAAGTGTCTCAA 58.630 37.500 0.00 0.00 0.00 3.02
2784 4119 5.237779 TCCGTTCCAAAATAAGTGTCTCAAC 59.762 40.000 0.00 0.00 0.00 3.18
2785 4120 5.238650 CCGTTCCAAAATAAGTGTCTCAACT 59.761 40.000 0.00 0.00 0.00 3.16
2786 4121 6.238648 CCGTTCCAAAATAAGTGTCTCAACTT 60.239 38.462 0.00 0.00 42.89 2.66
2787 4122 7.193595 CGTTCCAAAATAAGTGTCTCAACTTT 58.806 34.615 0.00 0.00 40.77 2.66
2788 4123 7.165812 CGTTCCAAAATAAGTGTCTCAACTTTG 59.834 37.037 0.00 0.00 40.77 2.77
2789 4124 7.639113 TCCAAAATAAGTGTCTCAACTTTGT 57.361 32.000 0.00 0.00 40.77 2.83
2790 4125 8.740123 TCCAAAATAAGTGTCTCAACTTTGTA 57.260 30.769 0.00 0.00 40.77 2.41
2791 4126 8.617809 TCCAAAATAAGTGTCTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
2792 4127 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2795 4130 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
2796 4131 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
2797 4132 6.163135 AGTGTCTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
2798 4133 6.583562 AGTGTCTCAACTTTGTACTAGCTTT 58.416 36.000 0.00 0.00 0.00 3.51
2799 4134 7.723324 AGTGTCTCAACTTTGTACTAGCTTTA 58.277 34.615 0.00 0.00 0.00 1.85
2800 4135 7.868415 AGTGTCTCAACTTTGTACTAGCTTTAG 59.132 37.037 0.00 0.00 0.00 1.85
2801 4136 7.652507 GTGTCTCAACTTTGTACTAGCTTTAGT 59.347 37.037 0.00 0.00 0.00 2.24
2802 4137 7.652105 TGTCTCAACTTTGTACTAGCTTTAGTG 59.348 37.037 0.00 0.00 0.00 2.74
2803 4138 7.652507 GTCTCAACTTTGTACTAGCTTTAGTGT 59.347 37.037 0.00 0.00 0.00 3.55
2804 4139 8.853126 TCTCAACTTTGTACTAGCTTTAGTGTA 58.147 33.333 0.00 0.00 0.00 2.90
2805 4140 9.472361 CTCAACTTTGTACTAGCTTTAGTGTAA 57.528 33.333 0.00 0.00 0.00 2.41
2806 4141 9.820725 TCAACTTTGTACTAGCTTTAGTGTAAA 57.179 29.630 0.00 0.00 0.00 2.01
2808 4143 9.828039 AACTTTGTACTAGCTTTAGTGTAAAGT 57.172 29.630 18.06 18.06 45.30 2.66
2809 4144 9.828039 ACTTTGTACTAGCTTTAGTGTAAAGTT 57.172 29.630 18.06 5.03 45.30 2.66
2811 4146 9.603921 TTTGTACTAGCTTTAGTGTAAAGTTGT 57.396 29.630 0.00 7.08 45.30 3.32
2813 4148 9.683069 TGTACTAGCTTTAGTGTAAAGTTGTAC 57.317 33.333 18.54 18.54 45.30 2.90
2814 4149 9.905171 GTACTAGCTTTAGTGTAAAGTTGTACT 57.095 33.333 18.34 0.00 45.30 2.73
2818 4153 8.828688 AGCTTTAGTGTAAAGTTGTACTAAGG 57.171 34.615 7.96 0.00 45.30 2.69
2819 4154 8.427276 AGCTTTAGTGTAAAGTTGTACTAAGGT 58.573 33.333 7.96 0.00 45.30 3.50
2820 4155 9.049523 GCTTTAGTGTAAAGTTGTACTAAGGTT 57.950 33.333 7.96 0.00 45.30 3.50
2823 4158 9.754382 TTAGTGTAAAGTTGTACTAAGGTTGAG 57.246 33.333 0.00 0.00 32.43 3.02
2824 4159 8.015185 AGTGTAAAGTTGTACTAAGGTTGAGA 57.985 34.615 0.00 0.00 0.00 3.27
2825 4160 7.924947 AGTGTAAAGTTGTACTAAGGTTGAGAC 59.075 37.037 0.00 0.00 0.00 3.36
2826 4161 7.707893 GTGTAAAGTTGTACTAAGGTTGAGACA 59.292 37.037 0.00 0.00 0.00 3.41
2827 4162 7.707893 TGTAAAGTTGTACTAAGGTTGAGACAC 59.292 37.037 0.00 0.00 0.00 3.67
2828 4163 6.481434 AAGTTGTACTAAGGTTGAGACACT 57.519 37.500 0.00 0.00 0.00 3.55
2829 4164 6.481434 AGTTGTACTAAGGTTGAGACACTT 57.519 37.500 0.00 0.00 0.00 3.16
2830 4165 7.592885 AGTTGTACTAAGGTTGAGACACTTA 57.407 36.000 0.00 0.00 0.00 2.24
2831 4166 8.191534 AGTTGTACTAAGGTTGAGACACTTAT 57.808 34.615 0.00 0.00 0.00 1.73
2832 4167 8.648693 AGTTGTACTAAGGTTGAGACACTTATT 58.351 33.333 0.00 0.00 0.00 1.40
2833 4168 9.269453 GTTGTACTAAGGTTGAGACACTTATTT 57.731 33.333 0.00 0.00 0.00 1.40
2834 4169 9.485206 TTGTACTAAGGTTGAGACACTTATTTC 57.515 33.333 0.00 0.00 0.00 2.17
2835 4170 7.811236 TGTACTAAGGTTGAGACACTTATTTCG 59.189 37.037 0.00 0.00 0.00 3.46
2836 4171 6.164176 ACTAAGGTTGAGACACTTATTTCGG 58.836 40.000 0.00 0.00 0.00 4.30
2837 4172 3.939066 AGGTTGAGACACTTATTTCGGG 58.061 45.455 0.00 0.00 0.00 5.14
2838 4173 3.581332 AGGTTGAGACACTTATTTCGGGA 59.419 43.478 0.00 0.00 0.00 5.14
2839 4174 3.683340 GGTTGAGACACTTATTTCGGGAC 59.317 47.826 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.585881 TCCCAATACTACATATACTTCTGCTTC 58.414 37.037 0.00 0.00 0.00 3.86
99 103 5.462398 CGCTTCTTTCGCTAATAACCATAGT 59.538 40.000 0.00 0.00 0.00 2.12
253 266 3.112263 AGACCGGTTAATCCTTCCATCA 58.888 45.455 9.42 0.00 0.00 3.07
271 284 9.774742 GAGGAACACATAAAAATGTCAATAGAC 57.225 33.333 0.00 0.00 45.19 2.59
275 288 6.092748 GCGAGGAACACATAAAAATGTCAAT 58.907 36.000 0.00 0.00 31.37 2.57
349 362 1.447217 CACTCAGCCACTCACACCA 59.553 57.895 0.00 0.00 0.00 4.17
360 373 0.883814 AGCAGAACACAGCACTCAGC 60.884 55.000 0.00 0.00 46.19 4.26
361 374 0.866427 CAGCAGAACACAGCACTCAG 59.134 55.000 0.00 0.00 0.00 3.35
362 375 0.178767 ACAGCAGAACACAGCACTCA 59.821 50.000 0.00 0.00 0.00 3.41
363 376 0.864455 GACAGCAGAACACAGCACTC 59.136 55.000 0.00 0.00 0.00 3.51
364 377 0.178767 TGACAGCAGAACACAGCACT 59.821 50.000 0.00 0.00 0.00 4.40
365 378 1.016627 TTGACAGCAGAACACAGCAC 58.983 50.000 0.00 0.00 0.00 4.40
406 419 0.815615 GATTGCCGAACAGCCCCTAG 60.816 60.000 0.00 0.00 0.00 3.02
407 420 1.223487 GATTGCCGAACAGCCCCTA 59.777 57.895 0.00 0.00 0.00 3.53
408 421 2.044946 GATTGCCGAACAGCCCCT 60.045 61.111 0.00 0.00 0.00 4.79
409 422 3.140814 GGATTGCCGAACAGCCCC 61.141 66.667 0.00 0.00 0.00 5.80
410 423 2.361104 TGGATTGCCGAACAGCCC 60.361 61.111 0.00 0.00 36.79 5.19
411 424 1.675641 AGTGGATTGCCGAACAGCC 60.676 57.895 0.00 0.00 36.79 4.85
412 425 1.503542 CAGTGGATTGCCGAACAGC 59.496 57.895 0.00 0.00 36.79 4.40
413 426 0.957395 AGCAGTGGATTGCCGAACAG 60.957 55.000 0.00 0.00 45.18 3.16
414 427 0.955428 GAGCAGTGGATTGCCGAACA 60.955 55.000 0.00 0.00 45.18 3.18
415 428 1.648467 GGAGCAGTGGATTGCCGAAC 61.648 60.000 0.00 0.00 45.18 3.95
416 429 1.377202 GGAGCAGTGGATTGCCGAA 60.377 57.895 0.00 0.00 45.18 4.30
417 430 2.268920 GGAGCAGTGGATTGCCGA 59.731 61.111 0.00 0.00 45.18 5.54
418 431 2.825836 GGGAGCAGTGGATTGCCG 60.826 66.667 0.00 0.00 45.18 5.69
419 432 1.751927 CAGGGAGCAGTGGATTGCC 60.752 63.158 0.00 0.00 45.18 4.52
420 433 0.322816 TTCAGGGAGCAGTGGATTGC 60.323 55.000 0.00 0.00 44.41 3.56
421 434 2.205022 TTTCAGGGAGCAGTGGATTG 57.795 50.000 0.00 0.00 0.00 2.67
422 435 3.245371 TGAATTTCAGGGAGCAGTGGATT 60.245 43.478 0.00 0.00 0.00 3.01
423 436 2.309755 TGAATTTCAGGGAGCAGTGGAT 59.690 45.455 0.00 0.00 0.00 3.41
424 437 1.704628 TGAATTTCAGGGAGCAGTGGA 59.295 47.619 0.00 0.00 0.00 4.02
425 438 2.205022 TGAATTTCAGGGAGCAGTGG 57.795 50.000 0.00 0.00 0.00 4.00
426 439 2.490903 CCTTGAATTTCAGGGAGCAGTG 59.509 50.000 19.97 0.00 45.53 3.66
427 440 2.376518 TCCTTGAATTTCAGGGAGCAGT 59.623 45.455 22.47 0.00 46.11 4.40
428 441 3.077484 TCCTTGAATTTCAGGGAGCAG 57.923 47.619 22.47 6.39 46.11 4.24
433 446 3.359033 TGCAGATCCTTGAATTTCAGGG 58.641 45.455 18.89 18.89 44.20 4.45
434 447 4.267536 TCTGCAGATCCTTGAATTTCAGG 58.732 43.478 13.74 1.69 0.00 3.86
435 448 4.201930 GCTCTGCAGATCCTTGAATTTCAG 60.202 45.833 18.63 0.90 0.00 3.02
436 449 3.693085 GCTCTGCAGATCCTTGAATTTCA 59.307 43.478 18.63 0.00 0.00 2.69
437 450 3.693085 TGCTCTGCAGATCCTTGAATTTC 59.307 43.478 18.63 0.00 33.32 2.17
438 451 3.442977 GTGCTCTGCAGATCCTTGAATTT 59.557 43.478 18.63 0.00 40.08 1.82
439 452 3.015327 GTGCTCTGCAGATCCTTGAATT 58.985 45.455 18.63 0.00 40.08 2.17
440 453 2.641305 GTGCTCTGCAGATCCTTGAAT 58.359 47.619 18.63 0.00 40.08 2.57
441 454 1.339438 GGTGCTCTGCAGATCCTTGAA 60.339 52.381 18.63 0.00 40.08 2.69
442 455 0.251354 GGTGCTCTGCAGATCCTTGA 59.749 55.000 18.63 0.00 40.08 3.02
443 456 0.252479 AGGTGCTCTGCAGATCCTTG 59.748 55.000 18.63 6.18 40.08 3.61
444 457 0.252479 CAGGTGCTCTGCAGATCCTT 59.748 55.000 23.63 8.71 40.08 3.36
445 458 1.906253 CAGGTGCTCTGCAGATCCT 59.094 57.895 18.63 20.60 40.08 3.24
446 459 4.536316 CAGGTGCTCTGCAGATCC 57.464 61.111 18.63 18.77 40.08 3.36
454 467 3.322466 CGGGGGAACAGGTGCTCT 61.322 66.667 0.00 0.00 0.00 4.09
455 468 4.410400 CCGGGGGAACAGGTGCTC 62.410 72.222 0.00 0.00 0.00 4.26
457 470 4.717313 GACCGGGGGAACAGGTGC 62.717 72.222 6.32 0.00 41.98 5.01
458 471 4.029809 GGACCGGGGGAACAGGTG 62.030 72.222 6.32 0.00 41.98 4.00
460 473 3.629035 TAGGGACCGGGGGAACAGG 62.629 68.421 6.32 0.00 35.98 4.00
461 474 2.039951 TAGGGACCGGGGGAACAG 59.960 66.667 6.32 0.00 0.00 3.16
462 475 2.284847 GTAGGGACCGGGGGAACA 60.285 66.667 6.32 0.00 0.00 3.18
463 476 1.203441 AAAGTAGGGACCGGGGGAAC 61.203 60.000 6.32 0.00 0.00 3.62
464 477 0.476219 AAAAGTAGGGACCGGGGGAA 60.476 55.000 6.32 0.00 0.00 3.97
465 478 0.476219 AAAAAGTAGGGACCGGGGGA 60.476 55.000 6.32 0.00 0.00 4.81
466 479 1.065199 GTAAAAAGTAGGGACCGGGGG 60.065 57.143 6.32 0.00 0.00 5.40
467 480 1.065199 GGTAAAAAGTAGGGACCGGGG 60.065 57.143 6.32 0.00 0.00 5.73
468 481 1.911357 AGGTAAAAAGTAGGGACCGGG 59.089 52.381 6.32 0.00 35.24 5.73
469 482 3.008266 TGAAGGTAAAAAGTAGGGACCGG 59.992 47.826 0.00 0.00 35.24 5.28
470 483 4.251268 CTGAAGGTAAAAAGTAGGGACCG 58.749 47.826 0.00 0.00 35.24 4.79
471 484 4.008330 GCTGAAGGTAAAAAGTAGGGACC 58.992 47.826 0.00 0.00 0.00 4.46
472 485 4.907809 AGCTGAAGGTAAAAAGTAGGGAC 58.092 43.478 0.00 0.00 0.00 4.46
473 486 4.019591 GGAGCTGAAGGTAAAAAGTAGGGA 60.020 45.833 0.00 0.00 0.00 4.20
474 487 4.262617 GGAGCTGAAGGTAAAAAGTAGGG 58.737 47.826 0.00 0.00 0.00 3.53
475 488 3.933332 CGGAGCTGAAGGTAAAAAGTAGG 59.067 47.826 0.00 0.00 0.00 3.18
498 511 4.101448 CTCTGCTCCCGGGGTTGG 62.101 72.222 23.50 9.94 0.00 3.77
499 512 4.785453 GCTCTGCTCCCGGGGTTG 62.785 72.222 23.50 12.70 0.00 3.77
505 518 4.504916 CTCCACGCTCTGCTCCCG 62.505 72.222 0.00 0.00 0.00 5.14
506 519 3.363844 GACTCCACGCTCTGCTCCC 62.364 68.421 0.00 0.00 0.00 4.30
507 520 2.183046 GACTCCACGCTCTGCTCC 59.817 66.667 0.00 0.00 0.00 4.70
508 521 2.202544 CGACTCCACGCTCTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
509 522 3.753434 CCGACTCCACGCTCTGCT 61.753 66.667 0.00 0.00 0.00 4.24
510 523 3.691744 CTCCGACTCCACGCTCTGC 62.692 68.421 0.00 0.00 0.00 4.26
511 524 2.487428 CTCCGACTCCACGCTCTG 59.513 66.667 0.00 0.00 0.00 3.35
512 525 2.752238 CCTCCGACTCCACGCTCT 60.752 66.667 0.00 0.00 0.00 4.09
513 526 3.827898 CCCTCCGACTCCACGCTC 61.828 72.222 0.00 0.00 0.00 5.03
514 527 3.663815 ATCCCTCCGACTCCACGCT 62.664 63.158 0.00 0.00 0.00 5.07
515 528 3.148279 ATCCCTCCGACTCCACGC 61.148 66.667 0.00 0.00 0.00 5.34
516 529 2.808315 CATCCCTCCGACTCCACG 59.192 66.667 0.00 0.00 0.00 4.94
517 530 2.501610 GCATCCCTCCGACTCCAC 59.498 66.667 0.00 0.00 0.00 4.02
518 531 2.764128 GGCATCCCTCCGACTCCA 60.764 66.667 0.00 0.00 0.00 3.86
525 538 2.190578 CCTGTTCGGCATCCCTCC 59.809 66.667 0.00 0.00 0.00 4.30
534 547 2.678336 GACAAATTAGAGGCCTGTTCGG 59.322 50.000 12.00 0.00 0.00 4.30
535 548 3.125316 GTGACAAATTAGAGGCCTGTTCG 59.875 47.826 12.00 0.00 0.00 3.95
536 549 3.440522 GGTGACAAATTAGAGGCCTGTTC 59.559 47.826 12.00 0.00 0.00 3.18
537 550 3.181434 TGGTGACAAATTAGAGGCCTGTT 60.181 43.478 12.00 0.00 37.44 3.16
538 551 2.375174 TGGTGACAAATTAGAGGCCTGT 59.625 45.455 12.00 9.69 37.44 4.00
539 552 3.071874 TGGTGACAAATTAGAGGCCTG 57.928 47.619 12.00 0.00 37.44 4.85
553 566 8.299570 ACAGACAGAATGAAAAATTATGGTGAC 58.700 33.333 0.00 0.00 39.69 3.67
555 568 8.517878 AGACAGACAGAATGAAAAATTATGGTG 58.482 33.333 0.00 0.00 39.69 4.17
556 569 8.641498 AGACAGACAGAATGAAAAATTATGGT 57.359 30.769 0.00 0.00 39.69 3.55
562 575 7.039923 AGCAATGAGACAGACAGAATGAAAAAT 60.040 33.333 0.00 0.00 39.69 1.82
563 576 6.263842 AGCAATGAGACAGACAGAATGAAAAA 59.736 34.615 0.00 0.00 39.69 1.94
564 577 5.766670 AGCAATGAGACAGACAGAATGAAAA 59.233 36.000 0.00 0.00 39.69 2.29
569 582 4.903054 TCAAGCAATGAGACAGACAGAAT 58.097 39.130 0.00 0.00 33.04 2.40
589 852 0.604578 GCAAAGGCTGGCATTTCTCA 59.395 50.000 3.38 0.00 36.96 3.27
605 868 1.071987 CCACAGCCACAGAGAGCAA 59.928 57.895 0.00 0.00 0.00 3.91
628 891 2.361119 AGTATGGCAGCAGCATCAATTG 59.639 45.455 2.65 0.00 44.61 2.32
978 1248 2.635229 CTTGCCCGGTCTCGATCAGG 62.635 65.000 0.00 0.00 39.00 3.86
979 1249 1.227089 CTTGCCCGGTCTCGATCAG 60.227 63.158 0.00 0.00 39.00 2.90
1080 1350 1.699083 TGGATCAGCACCAAAGTCTCA 59.301 47.619 0.00 0.00 34.25 3.27
1233 1503 1.550976 ACGATCTTCTTGAGGTCCCAC 59.449 52.381 0.00 0.00 31.35 4.61
1525 1810 0.461339 GTGCGTCCGAATGTATGGGT 60.461 55.000 0.00 0.00 0.00 4.51
1526 1811 1.487452 CGTGCGTCCGAATGTATGGG 61.487 60.000 0.00 0.00 0.00 4.00
1527 1812 0.804544 ACGTGCGTCCGAATGTATGG 60.805 55.000 2.92 0.00 0.00 2.74
1528 1813 1.515631 GTACGTGCGTCCGAATGTATG 59.484 52.381 0.00 0.00 28.86 2.39
1529 1814 1.402968 AGTACGTGCGTCCGAATGTAT 59.597 47.619 0.00 0.00 28.86 2.29
1538 1823 0.179205 AAGTAGCGAGTACGTGCGTC 60.179 55.000 0.00 0.00 41.98 5.19
1543 1828 0.599558 TGGCAAAGTAGCGAGTACGT 59.400 50.000 0.00 0.00 41.98 3.57
1544 1829 0.989890 GTGGCAAAGTAGCGAGTACG 59.010 55.000 0.00 0.00 42.93 3.67
1545 1830 2.365408 AGTGGCAAAGTAGCGAGTAC 57.635 50.000 0.00 0.00 34.64 2.73
1546 1831 2.683968 CAAGTGGCAAAGTAGCGAGTA 58.316 47.619 0.00 0.00 34.64 2.59
1547 1832 1.512926 CAAGTGGCAAAGTAGCGAGT 58.487 50.000 0.00 0.00 34.64 4.18
1548 1833 0.166814 GCAAGTGGCAAAGTAGCGAG 59.833 55.000 0.00 0.00 43.97 5.03
1549 1834 2.244000 GCAAGTGGCAAAGTAGCGA 58.756 52.632 0.00 0.00 43.97 4.93
1707 1992 3.108289 CTGTCCTGCTGCGACGTG 61.108 66.667 0.00 0.00 32.68 4.49
2007 2292 0.449786 ATCTCTGCTATCGATCGGCG 59.550 55.000 16.41 0.00 42.69 6.46
2008 2293 2.032799 CCTATCTCTGCTATCGATCGGC 59.967 54.545 16.41 11.58 0.00 5.54
2160 2446 5.051409 TCATCATATCAGGCCAATTCACA 57.949 39.130 5.01 0.00 0.00 3.58
2207 2493 4.636435 ACACCGAACGGGGCCTTG 62.636 66.667 15.64 7.27 44.03 3.61
2208 2494 4.324991 GACACCGAACGGGGCCTT 62.325 66.667 15.64 0.00 44.03 4.35
2211 2497 4.404098 ATGGACACCGAACGGGGC 62.404 66.667 15.64 8.22 44.03 5.80
2212 2498 2.125269 GATGGACACCGAACGGGG 60.125 66.667 14.15 14.15 46.10 5.73
2213 2499 2.125269 GGATGGACACCGAACGGG 60.125 66.667 17.44 8.83 43.62 5.28
2220 2506 2.125106 GTGGAGCGGATGGACACC 60.125 66.667 0.00 0.00 0.00 4.16
2221 2507 1.448540 CAGTGGAGCGGATGGACAC 60.449 63.158 0.00 0.00 0.00 3.67
2222 2508 2.981302 CAGTGGAGCGGATGGACA 59.019 61.111 0.00 0.00 0.00 4.02
2223 2509 2.512515 GCAGTGGAGCGGATGGAC 60.513 66.667 0.00 0.00 0.00 4.02
2224 2510 2.685017 AGCAGTGGAGCGGATGGA 60.685 61.111 0.00 0.00 40.15 3.41
2225 2511 2.202987 GAGCAGTGGAGCGGATGG 60.203 66.667 0.00 0.00 40.15 3.51
2226 2512 2.202987 GGAGCAGTGGAGCGGATG 60.203 66.667 0.00 0.00 40.15 3.51
2227 2513 3.842923 CGGAGCAGTGGAGCGGAT 61.843 66.667 0.00 0.00 40.15 4.18
2254 2540 3.535629 TTCACTGCAGCCCTGTCCG 62.536 63.158 15.27 0.00 0.00 4.79
2255 2541 0.823356 TTTTCACTGCAGCCCTGTCC 60.823 55.000 15.27 0.00 0.00 4.02
2256 2542 0.595095 CTTTTCACTGCAGCCCTGTC 59.405 55.000 15.27 0.00 0.00 3.51
2257 2543 0.106519 ACTTTTCACTGCAGCCCTGT 60.107 50.000 15.27 2.69 0.00 4.00
2258 2544 0.595095 GACTTTTCACTGCAGCCCTG 59.405 55.000 15.27 4.87 0.00 4.45
2259 2545 0.475906 AGACTTTTCACTGCAGCCCT 59.524 50.000 15.27 0.00 0.00 5.19
2260 2546 1.000938 CAAGACTTTTCACTGCAGCCC 60.001 52.381 15.27 0.00 0.00 5.19
2261 2547 1.949525 TCAAGACTTTTCACTGCAGCC 59.050 47.619 15.27 0.00 0.00 4.85
2262 2548 3.625938 CTTCAAGACTTTTCACTGCAGC 58.374 45.455 15.27 0.00 0.00 5.25
2263 2549 3.625938 GCTTCAAGACTTTTCACTGCAG 58.374 45.455 13.48 13.48 0.00 4.41
2264 2550 2.032054 CGCTTCAAGACTTTTCACTGCA 59.968 45.455 0.00 0.00 0.00 4.41
2265 2551 2.603173 CCGCTTCAAGACTTTTCACTGC 60.603 50.000 0.00 0.00 0.00 4.40
2266 2552 2.031682 CCCGCTTCAAGACTTTTCACTG 60.032 50.000 0.00 0.00 0.00 3.66
2267 2553 2.222027 CCCGCTTCAAGACTTTTCACT 58.778 47.619 0.00 0.00 0.00 3.41
2268 2554 1.335051 GCCCGCTTCAAGACTTTTCAC 60.335 52.381 0.00 0.00 0.00 3.18
2269 2555 0.951558 GCCCGCTTCAAGACTTTTCA 59.048 50.000 0.00 0.00 0.00 2.69
2270 2556 0.110192 CGCCCGCTTCAAGACTTTTC 60.110 55.000 0.00 0.00 0.00 2.29
2271 2557 0.534203 TCGCCCGCTTCAAGACTTTT 60.534 50.000 0.00 0.00 0.00 2.27
2272 2558 0.534203 TTCGCCCGCTTCAAGACTTT 60.534 50.000 0.00 0.00 0.00 2.66
2273 2559 0.534203 TTTCGCCCGCTTCAAGACTT 60.534 50.000 0.00 0.00 0.00 3.01
2274 2560 1.070786 TTTCGCCCGCTTCAAGACT 59.929 52.632 0.00 0.00 0.00 3.24
2275 2561 1.206831 GTTTCGCCCGCTTCAAGAC 59.793 57.895 0.00 0.00 0.00 3.01
2276 2562 2.314647 CGTTTCGCCCGCTTCAAGA 61.315 57.895 0.00 0.00 0.00 3.02
2277 2563 1.635663 ATCGTTTCGCCCGCTTCAAG 61.636 55.000 0.00 0.00 0.00 3.02
2278 2564 1.669760 ATCGTTTCGCCCGCTTCAA 60.670 52.632 0.00 0.00 0.00 2.69
2279 2565 2.047655 ATCGTTTCGCCCGCTTCA 60.048 55.556 0.00 0.00 0.00 3.02
2280 2566 2.399611 CATCGTTTCGCCCGCTTC 59.600 61.111 0.00 0.00 0.00 3.86
2281 2567 3.799755 GCATCGTTTCGCCCGCTT 61.800 61.111 0.00 0.00 0.00 4.68
2282 2568 4.760047 AGCATCGTTTCGCCCGCT 62.760 61.111 0.00 0.00 0.00 5.52
2283 2569 4.223964 GAGCATCGTTTCGCCCGC 62.224 66.667 0.00 0.00 0.00 6.13
2284 2570 3.564027 GGAGCATCGTTTCGCCCG 61.564 66.667 0.00 0.00 34.37 6.13
2285 2571 3.564027 CGGAGCATCGTTTCGCCC 61.564 66.667 0.00 0.00 34.37 6.13
2302 2588 0.305922 CTTGAAATCCGCGGATCTGC 59.694 55.000 38.94 28.69 33.08 4.26
2303 2589 0.940126 CCTTGAAATCCGCGGATCTG 59.060 55.000 38.94 24.58 33.08 2.90
2304 2590 0.830648 TCCTTGAAATCCGCGGATCT 59.169 50.000 38.94 28.67 33.08 2.75
2305 2591 1.221414 CTCCTTGAAATCCGCGGATC 58.779 55.000 38.94 28.86 33.08 3.36
2306 2592 0.815615 GCTCCTTGAAATCCGCGGAT 60.816 55.000 34.60 34.60 36.23 4.18
2307 2593 1.449601 GCTCCTTGAAATCCGCGGA 60.450 57.895 33.12 33.12 0.00 5.54
2308 2594 2.472909 GGCTCCTTGAAATCCGCGG 61.473 63.158 22.12 22.12 0.00 6.46
2309 2595 2.813179 CGGCTCCTTGAAATCCGCG 61.813 63.158 0.00 0.00 33.36 6.46
2310 2596 2.472909 CCGGCTCCTTGAAATCCGC 61.473 63.158 0.00 0.00 38.85 5.54
2311 2597 2.472909 GCCGGCTCCTTGAAATCCG 61.473 63.158 22.15 0.00 39.79 4.18
2312 2598 2.472909 CGCCGGCTCCTTGAAATCC 61.473 63.158 26.68 0.00 0.00 3.01
2313 2599 3.102097 CGCCGGCTCCTTGAAATC 58.898 61.111 26.68 0.00 0.00 2.17
2314 2600 3.134127 GCGCCGGCTCCTTGAAAT 61.134 61.111 26.68 0.00 35.83 2.17
2315 2601 3.918253 ATGCGCCGGCTCCTTGAAA 62.918 57.895 26.68 0.00 40.82 2.69
2316 2602 3.918253 AATGCGCCGGCTCCTTGAA 62.918 57.895 26.68 2.39 40.82 2.69
2317 2603 4.408821 AATGCGCCGGCTCCTTGA 62.409 61.111 26.68 0.00 40.82 3.02
2318 2604 4.183686 CAATGCGCCGGCTCCTTG 62.184 66.667 26.68 21.76 40.82 3.61
2325 2611 4.817063 CGTTCAGCAATGCGCCGG 62.817 66.667 4.18 0.00 44.04 6.13
2326 2612 4.817063 CCGTTCAGCAATGCGCCG 62.817 66.667 4.18 0.00 44.04 6.46
2327 2613 4.481112 CCCGTTCAGCAATGCGCC 62.481 66.667 4.18 0.00 44.04 6.53
2328 2614 4.481112 CCCCGTTCAGCAATGCGC 62.481 66.667 0.00 0.00 42.91 6.09
2329 2615 4.481112 GCCCCGTTCAGCAATGCG 62.481 66.667 0.00 0.00 0.00 4.73
2330 2616 4.133796 GGCCCCGTTCAGCAATGC 62.134 66.667 0.00 0.00 0.00 3.56
2331 2617 0.679640 TTAGGCCCCGTTCAGCAATG 60.680 55.000 0.00 0.00 0.00 2.82
2332 2618 0.258774 ATTAGGCCCCGTTCAGCAAT 59.741 50.000 0.00 0.00 0.00 3.56
2333 2619 0.039035 AATTAGGCCCCGTTCAGCAA 59.961 50.000 0.00 0.00 0.00 3.91
2334 2620 0.393808 GAATTAGGCCCCGTTCAGCA 60.394 55.000 0.00 0.00 0.00 4.41
2335 2621 1.101635 GGAATTAGGCCCCGTTCAGC 61.102 60.000 0.00 0.00 0.00 4.26
2336 2622 0.546598 AGGAATTAGGCCCCGTTCAG 59.453 55.000 0.00 0.00 0.00 3.02
2337 2623 0.996583 AAGGAATTAGGCCCCGTTCA 59.003 50.000 0.00 0.00 0.00 3.18
2338 2624 1.340697 ACAAGGAATTAGGCCCCGTTC 60.341 52.381 0.00 0.47 0.00 3.95
2339 2625 0.702316 ACAAGGAATTAGGCCCCGTT 59.298 50.000 0.00 0.00 0.00 4.44
2340 2626 1.489230 CTACAAGGAATTAGGCCCCGT 59.511 52.381 0.00 0.00 0.00 5.28
2341 2627 1.202770 CCTACAAGGAATTAGGCCCCG 60.203 57.143 0.00 0.00 37.67 5.73
2342 2628 2.132686 TCCTACAAGGAATTAGGCCCC 58.867 52.381 0.00 0.00 42.51 5.80
2358 2644 6.488006 GGACGTATTCCTAGTTGTACATCCTA 59.512 42.308 0.00 0.00 41.95 2.94
2378 2664 0.892755 TTGAGCGATTACCTGGACGT 59.107 50.000 0.00 0.00 0.00 4.34
2380 2666 1.291132 GCTTGAGCGATTACCTGGAC 58.709 55.000 0.00 0.00 0.00 4.02
2397 2683 5.746990 AACACTAGTTAACTGATCCAGCT 57.253 39.130 18.56 0.00 35.85 4.24
2469 2756 7.508977 TCCTCCCAACACAAATAGAGAAAATTT 59.491 33.333 0.00 0.00 0.00 1.82
2504 2791 2.035832 TGCTCTCGTCACAAGTCATGAA 59.964 45.455 0.00 0.00 0.00 2.57
2505 2792 1.613437 TGCTCTCGTCACAAGTCATGA 59.387 47.619 0.00 0.00 0.00 3.07
2506 2793 1.723542 GTGCTCTCGTCACAAGTCATG 59.276 52.381 0.00 0.00 34.73 3.07
2507 2794 1.667177 CGTGCTCTCGTCACAAGTCAT 60.667 52.381 0.00 0.00 34.27 3.06
2508 2795 0.317854 CGTGCTCTCGTCACAAGTCA 60.318 55.000 0.00 0.00 34.27 3.41
2509 2796 1.004277 CCGTGCTCTCGTCACAAGTC 61.004 60.000 0.00 0.00 34.27 3.01
2510 2797 1.007271 CCGTGCTCTCGTCACAAGT 60.007 57.895 0.00 0.00 34.27 3.16
2511 2798 0.730834 CTCCGTGCTCTCGTCACAAG 60.731 60.000 0.00 0.00 34.27 3.16
2512 2799 1.170290 TCTCCGTGCTCTCGTCACAA 61.170 55.000 0.00 0.00 34.27 3.33
2513 2800 0.960861 ATCTCCGTGCTCTCGTCACA 60.961 55.000 0.00 0.00 34.27 3.58
2514 2801 0.248296 GATCTCCGTGCTCTCGTCAC 60.248 60.000 0.00 0.00 0.00 3.67
2515 2802 0.393132 AGATCTCCGTGCTCTCGTCA 60.393 55.000 0.00 0.00 0.00 4.35
2516 2803 0.736053 AAGATCTCCGTGCTCTCGTC 59.264 55.000 0.00 0.00 0.00 4.20
2517 2804 2.039818 TAAGATCTCCGTGCTCTCGT 57.960 50.000 0.00 0.00 0.00 4.18
2518 2805 4.750952 TTATAAGATCTCCGTGCTCTCG 57.249 45.455 0.00 0.00 0.00 4.04
2519 2806 5.866633 CCAATTATAAGATCTCCGTGCTCTC 59.133 44.000 0.00 0.00 0.00 3.20
2520 2807 5.788450 CCAATTATAAGATCTCCGTGCTCT 58.212 41.667 0.00 0.00 0.00 4.09
2521 2808 4.390297 GCCAATTATAAGATCTCCGTGCTC 59.610 45.833 0.00 0.00 0.00 4.26
2522 2809 4.319177 GCCAATTATAAGATCTCCGTGCT 58.681 43.478 0.00 0.00 0.00 4.40
2526 3860 3.325870 TGCGCCAATTATAAGATCTCCG 58.674 45.455 4.18 0.00 0.00 4.63
2610 3944 3.056313 GCAACCTGGGCGAGCAATC 62.056 63.158 0.00 0.00 0.00 2.67
2624 3958 1.537202 GATCAGTCAACCAGGTGCAAC 59.463 52.381 0.00 0.00 0.00 4.17
2625 3959 1.142667 TGATCAGTCAACCAGGTGCAA 59.857 47.619 0.00 0.00 0.00 4.08
2626 3960 0.764271 TGATCAGTCAACCAGGTGCA 59.236 50.000 0.00 0.00 0.00 4.57
2627 3961 1.896220 TTGATCAGTCAACCAGGTGC 58.104 50.000 0.00 0.00 39.36 5.01
2639 3973 3.243035 TGCAAAAGTCAACGGTTGATCAG 60.243 43.478 24.81 14.56 42.47 2.90
2642 3976 3.791973 TTGCAAAAGTCAACGGTTGAT 57.208 38.095 24.81 8.87 42.47 2.57
2643 3977 3.577649 TTTGCAAAAGTCAACGGTTGA 57.422 38.095 19.07 19.07 37.33 3.18
2657 3991 9.950680 TTTGTTCTTTTATGTTTTGTTTTGCAA 57.049 22.222 0.00 0.00 34.87 4.08
2658 3992 9.950680 TTTTGTTCTTTTATGTTTTGTTTTGCA 57.049 22.222 0.00 0.00 0.00 4.08
2699 4033 7.757624 TCACGAACTTTATTTCAAACTTTTGCT 59.242 29.630 0.00 0.00 38.05 3.91
2755 4090 4.755123 ACACTTATTTTGGAACGGAGTGAG 59.245 41.667 7.50 0.00 45.00 3.51
2756 4091 4.710324 ACACTTATTTTGGAACGGAGTGA 58.290 39.130 7.50 0.00 45.00 3.41
2757 4092 4.755123 AGACACTTATTTTGGAACGGAGTG 59.245 41.667 0.00 0.00 45.00 3.51
2759 4094 4.994852 TGAGACACTTATTTTGGAACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
2760 4095 4.963373 TGAGACACTTATTTTGGAACGGA 58.037 39.130 0.00 0.00 0.00 4.69
2761 4096 5.238650 AGTTGAGACACTTATTTTGGAACGG 59.761 40.000 0.00 0.00 0.00 4.44
2762 4097 6.300354 AGTTGAGACACTTATTTTGGAACG 57.700 37.500 0.00 0.00 0.00 3.95
2763 4098 7.973944 ACAAAGTTGAGACACTTATTTTGGAAC 59.026 33.333 0.00 0.00 35.87 3.62
2764 4099 8.062065 ACAAAGTTGAGACACTTATTTTGGAA 57.938 30.769 0.00 0.00 35.87 3.53
2765 4100 7.639113 ACAAAGTTGAGACACTTATTTTGGA 57.361 32.000 0.00 0.00 35.87 3.53
2766 4101 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2769 4104 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
2770 4105 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
2771 4106 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
2772 4107 7.286215 AGCTAGTACAAAGTTGAGACACTTA 57.714 36.000 0.00 0.00 35.87 2.24
2773 4108 6.163135 AGCTAGTACAAAGTTGAGACACTT 57.837 37.500 0.00 0.00 38.74 3.16
2774 4109 5.793030 AGCTAGTACAAAGTTGAGACACT 57.207 39.130 0.00 0.00 0.00 3.55
2775 4110 6.846325 AAAGCTAGTACAAAGTTGAGACAC 57.154 37.500 0.00 0.00 0.00 3.67
2776 4111 7.652105 CACTAAAGCTAGTACAAAGTTGAGACA 59.348 37.037 0.00 0.00 36.14 3.41
2777 4112 7.652507 ACACTAAAGCTAGTACAAAGTTGAGAC 59.347 37.037 0.00 0.00 36.14 3.36
2778 4113 7.723324 ACACTAAAGCTAGTACAAAGTTGAGA 58.277 34.615 0.00 0.00 36.14 3.27
2779 4114 7.948278 ACACTAAAGCTAGTACAAAGTTGAG 57.052 36.000 0.00 0.00 36.14 3.02
2780 4115 9.820725 TTTACACTAAAGCTAGTACAAAGTTGA 57.179 29.630 0.00 0.00 36.14 3.18
2782 4117 9.828039 ACTTTACACTAAAGCTAGTACAAAGTT 57.172 29.630 15.50 6.65 46.97 2.66
2783 4118 9.828039 AACTTTACACTAAAGCTAGTACAAAGT 57.172 29.630 15.50 15.50 46.97 2.66
2785 4120 9.603921 ACAACTTTACACTAAAGCTAGTACAAA 57.396 29.630 0.00 0.00 46.97 2.83
2787 4122 9.683069 GTACAACTTTACACTAAAGCTAGTACA 57.317 33.333 16.89 0.00 46.97 2.90
2788 4123 9.905171 AGTACAACTTTACACTAAAGCTAGTAC 57.095 33.333 15.52 15.52 46.97 2.73
2792 4127 9.918630 CCTTAGTACAACTTTACACTAAAGCTA 57.081 33.333 0.00 0.00 46.97 3.32
2793 4128 8.427276 ACCTTAGTACAACTTTACACTAAAGCT 58.573 33.333 0.00 0.00 46.97 3.74
2794 4129 8.599055 ACCTTAGTACAACTTTACACTAAAGC 57.401 34.615 0.00 0.00 46.97 3.51
2797 4132 9.754382 CTCAACCTTAGTACAACTTTACACTAA 57.246 33.333 0.00 0.00 33.61 2.24
2798 4133 9.135189 TCTCAACCTTAGTACAACTTTACACTA 57.865 33.333 0.00 0.00 0.00 2.74
2799 4134 7.924947 GTCTCAACCTTAGTACAACTTTACACT 59.075 37.037 0.00 0.00 0.00 3.55
2800 4135 7.707893 TGTCTCAACCTTAGTACAACTTTACAC 59.292 37.037 0.00 0.00 0.00 2.90
2801 4136 7.707893 GTGTCTCAACCTTAGTACAACTTTACA 59.292 37.037 0.00 0.00 0.00 2.41
2802 4137 7.924947 AGTGTCTCAACCTTAGTACAACTTTAC 59.075 37.037 0.00 0.00 0.00 2.01
2803 4138 8.015185 AGTGTCTCAACCTTAGTACAACTTTA 57.985 34.615 0.00 0.00 0.00 1.85
2804 4139 6.885922 AGTGTCTCAACCTTAGTACAACTTT 58.114 36.000 0.00 0.00 0.00 2.66
2805 4140 6.481434 AGTGTCTCAACCTTAGTACAACTT 57.519 37.500 0.00 0.00 0.00 2.66
2806 4141 6.481434 AAGTGTCTCAACCTTAGTACAACT 57.519 37.500 0.00 0.00 0.00 3.16
2807 4142 8.828688 AATAAGTGTCTCAACCTTAGTACAAC 57.171 34.615 0.00 0.00 0.00 3.32
2808 4143 9.485206 GAAATAAGTGTCTCAACCTTAGTACAA 57.515 33.333 0.00 0.00 0.00 2.41
2809 4144 7.811236 CGAAATAAGTGTCTCAACCTTAGTACA 59.189 37.037 0.00 0.00 0.00 2.90
2810 4145 7.275123 CCGAAATAAGTGTCTCAACCTTAGTAC 59.725 40.741 0.00 0.00 0.00 2.73
2811 4146 7.318141 CCGAAATAAGTGTCTCAACCTTAGTA 58.682 38.462 0.00 0.00 0.00 1.82
2812 4147 6.164176 CCGAAATAAGTGTCTCAACCTTAGT 58.836 40.000 0.00 0.00 0.00 2.24
2813 4148 5.581085 CCCGAAATAAGTGTCTCAACCTTAG 59.419 44.000 0.00 0.00 0.00 2.18
2814 4149 5.246656 TCCCGAAATAAGTGTCTCAACCTTA 59.753 40.000 0.00 0.00 0.00 2.69
2815 4150 4.041198 TCCCGAAATAAGTGTCTCAACCTT 59.959 41.667 0.00 0.00 0.00 3.50
2816 4151 3.581332 TCCCGAAATAAGTGTCTCAACCT 59.419 43.478 0.00 0.00 0.00 3.50
2817 4152 3.683340 GTCCCGAAATAAGTGTCTCAACC 59.317 47.826 0.00 0.00 0.00 3.77
2818 4153 3.367025 CGTCCCGAAATAAGTGTCTCAAC 59.633 47.826 0.00 0.00 0.00 3.18
2819 4154 3.581755 CGTCCCGAAATAAGTGTCTCAA 58.418 45.455 0.00 0.00 0.00 3.02
2820 4155 2.094390 CCGTCCCGAAATAAGTGTCTCA 60.094 50.000 0.00 0.00 0.00 3.27
2821 4156 2.165030 TCCGTCCCGAAATAAGTGTCTC 59.835 50.000 0.00 0.00 0.00 3.36
2822 4157 2.165845 CTCCGTCCCGAAATAAGTGTCT 59.834 50.000 0.00 0.00 0.00 3.41
2823 4158 2.537401 CTCCGTCCCGAAATAAGTGTC 58.463 52.381 0.00 0.00 0.00 3.67
2824 4159 1.206371 CCTCCGTCCCGAAATAAGTGT 59.794 52.381 0.00 0.00 0.00 3.55
2825 4160 1.472728 CCCTCCGTCCCGAAATAAGTG 60.473 57.143 0.00 0.00 0.00 3.16
2826 4161 0.828677 CCCTCCGTCCCGAAATAAGT 59.171 55.000 0.00 0.00 0.00 2.24
2827 4162 1.068741 CTCCCTCCGTCCCGAAATAAG 59.931 57.143 0.00 0.00 0.00 1.73
2828 4163 1.117150 CTCCCTCCGTCCCGAAATAA 58.883 55.000 0.00 0.00 0.00 1.40
2829 4164 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
2830 4165 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
2831 4166 0.682209 CTACTCCCTCCGTCCCGAAA 60.682 60.000 0.00 0.00 0.00 3.46
2832 4167 1.077212 CTACTCCCTCCGTCCCGAA 60.077 63.158 0.00 0.00 0.00 4.30
2833 4168 1.856539 AACTACTCCCTCCGTCCCGA 61.857 60.000 0.00 0.00 0.00 5.14
2834 4169 0.969409 AAACTACTCCCTCCGTCCCG 60.969 60.000 0.00 0.00 0.00 5.14
2835 4170 0.535797 CAAACTACTCCCTCCGTCCC 59.464 60.000 0.00 0.00 0.00 4.46
2836 4171 0.108281 GCAAACTACTCCCTCCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
2837 4172 0.606604 TGCAAACTACTCCCTCCGTC 59.393 55.000 0.00 0.00 0.00 4.79
2838 4173 1.053424 TTGCAAACTACTCCCTCCGT 58.947 50.000 0.00 0.00 0.00 4.69
2839 4174 2.178912 TTTGCAAACTACTCCCTCCG 57.821 50.000 8.05 0.00 0.00 4.63
2840 4175 6.584185 TTTTATTTGCAAACTACTCCCTCC 57.416 37.500 15.41 0.00 0.00 4.30
2917 4252 6.959671 TTTTGTCGAAATCTGCAAACTTTT 57.040 29.167 0.00 0.00 31.62 2.27
2918 4253 6.959671 TTTTTGTCGAAATCTGCAAACTTT 57.040 29.167 0.00 0.00 31.62 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.