Multiple sequence alignment - TraesCS3D01G432700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G432700 chr3D 100.000 4830 0 0 1 4830 546259029 546254200 0.000000e+00 8920.0
1 TraesCS3D01G432700 chr3D 81.298 524 88 7 3312 3830 546331649 546331131 2.690000e-112 416.0
2 TraesCS3D01G432700 chr3D 78.392 398 82 4 2467 2862 546332621 546332226 6.200000e-64 255.0
3 TraesCS3D01G432700 chr3D 97.143 70 2 0 4020 4089 564148161 564148092 8.490000e-23 119.0
4 TraesCS3D01G432700 chr3A 92.082 2286 106 37 1738 3989 682990964 682988720 0.000000e+00 3149.0
5 TraesCS3D01G432700 chr3A 88.633 783 51 14 983 1739 682991767 682990997 0.000000e+00 918.0
6 TraesCS3D01G432700 chr3A 81.395 989 78 49 77 989 682992753 682991795 0.000000e+00 710.0
7 TraesCS3D01G432700 chr3A 81.107 524 89 7 3312 3830 683187702 683187184 1.250000e-110 411.0
8 TraesCS3D01G432700 chr3A 88.750 240 19 3 4599 4830 682987953 682987714 2.200000e-73 287.0
9 TraesCS3D01G432700 chr3A 77.444 399 84 5 2467 2862 683188765 683188370 2.910000e-57 233.0
10 TraesCS3D01G432700 chr3A 86.391 169 19 3 4118 4284 682988582 682988416 1.070000e-41 182.0
11 TraesCS3D01G432700 chr3B 91.748 2242 101 46 1788 3989 723152322 723150125 0.000000e+00 3038.0
12 TraesCS3D01G432700 chr3B 90.117 769 44 14 983 1737 723153492 723152742 0.000000e+00 970.0
13 TraesCS3D01G432700 chr3B 86.425 884 43 38 49 900 723154468 723153630 0.000000e+00 896.0
14 TraesCS3D01G432700 chr3B 81.107 524 89 7 3312 3830 723444440 723443922 1.250000e-110 411.0
15 TraesCS3D01G432700 chr3B 78.571 546 66 25 4321 4828 723147950 723147418 3.630000e-81 313.0
16 TraesCS3D01G432700 chr3B 94.706 170 9 0 4661 4830 723149447 723149278 1.030000e-66 265.0
17 TraesCS3D01G432700 chr3B 78.643 398 81 4 2467 2862 723445397 723445002 1.330000e-65 261.0
18 TraesCS3D01G432700 chr3B 83.203 256 16 10 750 989 723488306 723488550 4.900000e-50 209.0
19 TraesCS3D01G432700 chr3B 90.506 158 11 2 983 1136 723488578 723488735 6.340000e-49 206.0
20 TraesCS3D01G432700 chr3B 97.183 71 2 0 4018 4088 398956569 398956499 2.360000e-23 121.0
21 TraesCS3D01G432700 chr3B 88.710 62 7 0 4487 4548 723149623 723149562 5.180000e-10 76.8
22 TraesCS3D01G432700 chr5A 83.582 335 14 12 3604 3937 547635263 547634969 4.760000e-70 276.0
23 TraesCS3D01G432700 chr2B 83.284 335 15 12 3604 3937 722833332 722833626 2.220000e-68 270.0
24 TraesCS3D01G432700 chr2B 91.304 161 11 2 4660 4818 238259539 238259380 2.930000e-52 217.0
25 TraesCS3D01G432700 chr2B 92.208 154 9 3 4678 4829 154906849 154907001 1.050000e-51 215.0
26 TraesCS3D01G432700 chr2B 89.937 159 13 3 4657 4814 154929985 154930141 8.200000e-48 202.0
27 TraesCS3D01G432700 chr2B 78.061 196 16 7 810 989 769889158 769888974 1.110000e-16 99.0
28 TraesCS3D01G432700 chr7B 82.687 335 16 13 3604 3937 576424816 576425109 4.800000e-65 259.0
29 TraesCS3D01G432700 chr7B 90.506 158 11 2 983 1136 74832928 74833085 6.340000e-49 206.0
30 TraesCS3D01G432700 chr7B 94.667 75 4 0 4015 4089 743857371 743857445 3.050000e-22 117.0
31 TraesCS3D01G432700 chr7B 84.545 110 6 6 810 919 74832715 74832813 1.110000e-16 99.0
32 TraesCS3D01G432700 chr6B 93.038 158 7 2 983 1136 485866141 485866298 1.350000e-55 228.0
33 TraesCS3D01G432700 chr6B 83.594 256 15 9 750 989 485865869 485866113 1.050000e-51 215.0
34 TraesCS3D01G432700 chr2A 94.406 143 8 0 4676 4818 197222099 197221957 2.260000e-53 220.0
35 TraesCS3D01G432700 chr2A 97.222 72 2 0 4018 4089 18463702 18463631 6.560000e-24 122.0
36 TraesCS3D01G432700 chr5B 92.763 152 8 1 983 1131 355631537 355631688 2.930000e-52 217.0
37 TraesCS3D01G432700 chr5B 88.372 172 16 3 4661 4830 13224328 13224159 2.280000e-48 204.0
38 TraesCS3D01G432700 chr5B 90.728 151 10 2 990 1136 345970607 345970457 1.060000e-46 198.0
39 TraesCS3D01G432700 chr5B 85.165 182 16 6 750 931 345970886 345970716 4.970000e-40 176.0
40 TraesCS3D01G432700 chr5B 87.342 158 11 4 983 1136 206099501 206099653 6.430000e-39 172.0
41 TraesCS3D01G432700 chr5B 84.906 106 5 4 810 915 355631310 355631404 3.980000e-16 97.1
42 TraesCS3D01G432700 chr5D 91.772 158 8 3 983 1136 300761424 300761580 1.050000e-51 215.0
43 TraesCS3D01G432700 chr5D 90.667 150 11 1 986 1132 509282652 509282503 3.810000e-46 196.0
44 TraesCS3D01G432700 chr5D 82.031 256 16 11 750 989 300761155 300761396 1.770000e-44 191.0
45 TraesCS3D01G432700 chr2D 93.571 140 9 0 4675 4814 103147565 103147704 4.900000e-50 209.0
46 TraesCS3D01G432700 chr2D 98.592 71 1 0 4018 4088 49887791 49887721 5.070000e-25 126.0
47 TraesCS3D01G432700 chr1B 82.869 251 16 14 755 989 562144431 562144670 2.950000e-47 200.0
48 TraesCS3D01G432700 chr1B 79.082 196 14 13 810 989 182046569 182046385 5.110000e-20 110.0
49 TraesCS3D01G432700 chr1B 85.455 110 5 4 810 919 604306797 604306895 2.380000e-18 104.0
50 TraesCS3D01G432700 chr4A 90.260 154 11 2 987 1136 698791879 698791726 1.060000e-46 198.0
51 TraesCS3D01G432700 chr4A 94.667 75 4 0 4014 4088 2565853 2565927 3.050000e-22 117.0
52 TraesCS3D01G432700 chr4A 78.974 195 14 6 811 989 698792094 698791911 1.840000e-19 108.0
53 TraesCS3D01G432700 chr7D 89.610 154 12 2 987 1136 188159261 188159414 4.930000e-45 193.0
54 TraesCS3D01G432700 chr6D 95.775 71 3 0 4018 4088 90114593 90114663 1.100000e-21 115.0
55 TraesCS3D01G432700 chr4D 94.521 73 4 0 4016 4088 436954739 436954667 3.950000e-21 113.0
56 TraesCS3D01G432700 chr6A 93.421 76 4 1 4021 4096 614360406 614360332 1.420000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G432700 chr3D 546254200 546259029 4829 True 8920.000000 8920 100.0000 1 4830 1 chr3D.!!$R1 4829
1 TraesCS3D01G432700 chr3D 546331131 546332621 1490 True 335.500000 416 79.8450 2467 3830 2 chr3D.!!$R3 1363
2 TraesCS3D01G432700 chr3A 682987714 682992753 5039 True 1049.200000 3149 87.4502 77 4830 5 chr3A.!!$R1 4753
3 TraesCS3D01G432700 chr3A 683187184 683188765 1581 True 322.000000 411 79.2755 2467 3830 2 chr3A.!!$R2 1363
4 TraesCS3D01G432700 chr3B 723147418 723154468 7050 True 926.466667 3038 88.3795 49 4830 6 chr3B.!!$R2 4781
5 TraesCS3D01G432700 chr3B 723443922 723445397 1475 True 336.000000 411 79.8750 2467 3830 2 chr3B.!!$R3 1363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.254178 GCCTTTCCATCTCCAGCTCA 59.746 55.0 0.00 0.00 0.00 4.26 F
604 690 0.255890 TATTTCCCACTGGCTGGCTC 59.744 55.0 2.00 0.00 39.01 4.70 F
1853 2408 0.040157 CGTGCCGGATGCCATTATTG 60.040 55.0 5.05 0.00 40.16 1.90 F
2195 2757 0.463204 TGTAGCATCTGAGCAGGAGC 59.537 55.0 0.00 2.74 42.56 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1154 1307 0.250770 GCCCAAGAACGGAAGAAGGT 60.251 55.0 0.0 0.0 0.0 3.50 R
2194 2756 0.099436 GCTCACCAACCATTCGATGC 59.901 55.0 0.0 0.0 0.0 3.91 R
3276 4090 0.319083 TCCACACCGTCGTTAGCATT 59.681 50.0 0.0 0.0 0.0 3.56 R
4070 4899 0.033208 GGGGGAAGTGCATGGATGAA 60.033 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.547859 CCGCCTTTCCATCTCCAG 57.452 61.111 0.00 0.00 0.00 3.86
18 19 1.821332 CCGCCTTTCCATCTCCAGC 60.821 63.158 0.00 0.00 0.00 4.85
19 20 1.222936 CGCCTTTCCATCTCCAGCT 59.777 57.895 0.00 0.00 0.00 4.24
20 21 0.813210 CGCCTTTCCATCTCCAGCTC 60.813 60.000 0.00 0.00 0.00 4.09
21 22 0.254178 GCCTTTCCATCTCCAGCTCA 59.746 55.000 0.00 0.00 0.00 4.26
22 23 2.016096 GCCTTTCCATCTCCAGCTCAC 61.016 57.143 0.00 0.00 0.00 3.51
23 24 1.649664 CTTTCCATCTCCAGCTCACG 58.350 55.000 0.00 0.00 0.00 4.35
24 25 0.391661 TTTCCATCTCCAGCTCACGC 60.392 55.000 0.00 0.00 0.00 5.34
25 26 2.563050 TTCCATCTCCAGCTCACGCG 62.563 60.000 3.53 3.53 42.32 6.01
26 27 3.260483 CATCTCCAGCTCACGCGC 61.260 66.667 5.73 0.00 42.32 6.86
27 28 4.521062 ATCTCCAGCTCACGCGCC 62.521 66.667 5.73 0.00 42.32 6.53
40 41 3.869272 GCGCCTGCGTGATTGAGG 61.869 66.667 13.57 0.00 42.09 3.86
41 42 3.197790 CGCCTGCGTGATTGAGGG 61.198 66.667 2.83 0.00 34.35 4.30
42 43 2.268920 GCCTGCGTGATTGAGGGA 59.731 61.111 0.00 0.00 0.00 4.20
43 44 1.817099 GCCTGCGTGATTGAGGGAG 60.817 63.158 0.00 0.00 0.00 4.30
44 45 1.153289 CCTGCGTGATTGAGGGAGG 60.153 63.158 0.00 0.00 41.10 4.30
45 46 1.153289 CTGCGTGATTGAGGGAGGG 60.153 63.158 0.00 0.00 0.00 4.30
46 47 1.903877 CTGCGTGATTGAGGGAGGGT 61.904 60.000 0.00 0.00 0.00 4.34
47 48 1.153349 GCGTGATTGAGGGAGGGTC 60.153 63.158 0.00 0.00 0.00 4.46
52 53 1.383248 ATTGAGGGAGGGTCGGGAG 60.383 63.158 0.00 0.00 0.00 4.30
104 107 3.247648 CGCCCAGTTGATAAACTAATCGG 59.752 47.826 0.00 0.00 0.00 4.18
256 277 1.227321 ACGACGTGCCGGAGAAAAA 60.227 52.632 5.05 0.00 0.00 1.94
257 278 1.219522 ACGACGTGCCGGAGAAAAAG 61.220 55.000 5.05 0.00 0.00 2.27
259 280 1.227853 ACGTGCCGGAGAAAAAGCT 60.228 52.632 5.05 0.00 0.00 3.74
261 282 0.442699 CGTGCCGGAGAAAAAGCTAC 59.557 55.000 5.05 0.00 0.00 3.58
275 296 8.611654 AGAAAAAGCTACGTAAAGAAATGGTA 57.388 30.769 0.00 0.00 0.00 3.25
280 301 7.592439 AGCTACGTAAAGAAATGGTAAGAAC 57.408 36.000 0.00 0.00 0.00 3.01
296 317 0.314935 GAACGGCATATTGGCATGGG 59.685 55.000 0.00 0.00 43.94 4.00
312 343 1.143401 GGGAGGAATCGTTCGGGTC 59.857 63.158 0.00 0.00 0.00 4.46
332 364 0.670546 TGCGCCGGAGAAGAAAGAAG 60.671 55.000 10.31 0.00 0.00 2.85
334 366 0.741221 CGCCGGAGAAGAAAGAAGGG 60.741 60.000 5.05 0.00 0.00 3.95
450 488 1.681486 CCCGCCCCTCTCTCTTTCTC 61.681 65.000 0.00 0.00 0.00 2.87
452 490 0.686112 CGCCCCTCTCTCTTTCTCCT 60.686 60.000 0.00 0.00 0.00 3.69
454 492 1.209261 GCCCCTCTCTCTTTCTCCTTG 59.791 57.143 0.00 0.00 0.00 3.61
456 494 1.905215 CCCTCTCTCTTTCTCCTTGCA 59.095 52.381 0.00 0.00 0.00 4.08
509 578 1.457009 GCCAGCCTCTACTAGACCCG 61.457 65.000 0.00 0.00 0.00 5.28
604 690 0.255890 TATTTCCCACTGGCTGGCTC 59.744 55.000 2.00 0.00 39.01 4.70
629 715 2.805353 CGCTCGTCACCTTGACCG 60.805 66.667 0.76 0.00 44.20 4.79
687 778 2.040278 CCATCCCTTTGTCTTCTCACCA 59.960 50.000 0.00 0.00 0.00 4.17
875 966 0.401738 AGCAAGCAAGCTAACCAGGA 59.598 50.000 0.60 0.00 44.50 3.86
948 1057 3.030882 GTCTAGATTCGCGCCGGC 61.031 66.667 19.07 19.07 0.00 6.13
949 1058 4.280494 TCTAGATTCGCGCCGGCC 62.280 66.667 23.46 13.14 35.02 6.13
971 1084 3.003763 AGCCGGTCAAGGAGGTCC 61.004 66.667 1.90 0.00 0.00 4.46
974 1087 2.266055 CGGTCAAGGAGGTCCAGC 59.734 66.667 0.00 0.00 38.89 4.85
1154 1307 1.760875 GTACGCCCTCCCATCTCCA 60.761 63.158 0.00 0.00 0.00 3.86
1164 1317 0.179000 CCCATCTCCACCTTCTTCCG 59.821 60.000 0.00 0.00 0.00 4.30
1255 1409 1.141858 GCCGAGATTCAGATTTCCCCT 59.858 52.381 0.00 0.00 0.00 4.79
1264 1424 4.489771 ATTTCCCCTGCTCCGGCG 62.490 66.667 0.00 0.00 42.25 6.46
1322 1482 1.647629 GCTGCTGAATCCGCATCAG 59.352 57.895 0.00 6.11 45.65 2.90
1347 1507 2.767496 CAGGGCTCCTAGCTGGCT 60.767 66.667 0.00 0.00 41.99 4.75
1435 1595 1.543358 GTCCTCCGGTTCGAACTAGTT 59.457 52.381 26.32 8.13 0.00 2.24
1437 1597 2.749621 TCCTCCGGTTCGAACTAGTTAC 59.250 50.000 26.32 8.88 0.00 2.50
1441 1601 2.160417 CCGGTTCGAACTAGTTACTCGT 59.840 50.000 26.32 0.00 34.27 4.18
1465 1638 3.384532 CAGCCCGCCCATTTTGCT 61.385 61.111 0.00 0.00 0.00 3.91
1467 1640 3.694538 GCCCGCCCATTTTGCTGT 61.695 61.111 0.00 0.00 0.00 4.40
1490 1663 2.555006 CCCCGGGATCAATAATGCATGA 60.555 50.000 26.32 0.00 0.00 3.07
1577 1756 1.447643 GGACAGGCAGACACACACT 59.552 57.895 0.00 0.00 0.00 3.55
1644 1826 1.078709 CAATTCTCGAAGCAAGCCGA 58.921 50.000 0.00 0.00 0.00 5.54
1670 1852 3.194968 CGGTAGGTGAATTCAGTACCACT 59.805 47.826 29.65 16.69 36.85 4.00
1683 1869 4.067944 AGTACCACTGAATTCCCTCTCT 57.932 45.455 2.27 0.00 0.00 3.10
1689 1875 3.113824 ACTGAATTCCCTCTCTGATGCT 58.886 45.455 2.27 0.00 0.00 3.79
1690 1876 4.100653 CACTGAATTCCCTCTCTGATGCTA 59.899 45.833 2.27 0.00 0.00 3.49
1691 1877 4.100808 ACTGAATTCCCTCTCTGATGCTAC 59.899 45.833 2.27 0.00 0.00 3.58
1692 1878 4.033009 TGAATTCCCTCTCTGATGCTACA 58.967 43.478 2.27 0.00 0.00 2.74
1693 1879 4.100653 TGAATTCCCTCTCTGATGCTACAG 59.899 45.833 2.27 4.74 39.02 2.74
1694 1880 3.388552 TTCCCTCTCTGATGCTACAGA 57.611 47.619 11.53 11.53 43.39 3.41
1853 2408 0.040157 CGTGCCGGATGCCATTATTG 60.040 55.000 5.05 0.00 40.16 1.90
1905 2460 1.001633 CTGTACCTAACCCGCACAGTT 59.998 52.381 0.00 0.00 33.53 3.16
1918 2473 1.742761 CACAGTTTGCTCCATCGGAT 58.257 50.000 0.00 0.00 0.00 4.18
1920 2475 1.278985 ACAGTTTGCTCCATCGGATGA 59.721 47.619 19.30 4.96 0.00 2.92
1922 2477 2.947652 CAGTTTGCTCCATCGGATGAAT 59.052 45.455 19.30 0.00 0.00 2.57
1923 2478 3.379372 CAGTTTGCTCCATCGGATGAATT 59.621 43.478 19.30 0.00 0.00 2.17
1926 2481 4.637483 TTGCTCCATCGGATGAATTTTC 57.363 40.909 19.30 3.30 0.00 2.29
2050 2611 4.400529 TTCCCTTGGCTGTTTTTCTTTC 57.599 40.909 0.00 0.00 0.00 2.62
2064 2625 2.561478 TCTTTCCCTCCCGTTGAAAG 57.439 50.000 0.00 0.00 43.93 2.62
2153 2715 7.821846 TGTTTTCATCAAAGTTTAAAACTGCCT 59.178 29.630 18.40 0.00 41.91 4.75
2154 2716 7.769272 TTTCATCAAAGTTTAAAACTGCCTG 57.231 32.000 0.00 0.00 41.91 4.85
2155 2717 6.707440 TCATCAAAGTTTAAAACTGCCTGA 57.293 33.333 0.00 0.00 41.91 3.86
2156 2718 7.288810 TCATCAAAGTTTAAAACTGCCTGAT 57.711 32.000 0.00 0.00 41.91 2.90
2157 2719 8.402798 TCATCAAAGTTTAAAACTGCCTGATA 57.597 30.769 0.00 0.00 41.91 2.15
2158 2720 8.514594 TCATCAAAGTTTAAAACTGCCTGATAG 58.485 33.333 0.00 0.00 41.91 2.08
2192 2754 3.257469 TCTTTGTAGCATCTGAGCAGG 57.743 47.619 0.00 0.00 36.85 4.85
2193 2755 2.833943 TCTTTGTAGCATCTGAGCAGGA 59.166 45.455 0.00 0.00 36.85 3.86
2194 2756 2.975732 TTGTAGCATCTGAGCAGGAG 57.024 50.000 0.00 0.00 36.85 3.69
2195 2757 0.463204 TGTAGCATCTGAGCAGGAGC 59.537 55.000 0.00 2.74 42.56 4.70
2248 2810 0.667184 CTCGGCCATTTTGCACCAAC 60.667 55.000 2.24 0.00 0.00 3.77
2249 2811 1.112315 TCGGCCATTTTGCACCAACT 61.112 50.000 2.24 0.00 0.00 3.16
2250 2812 0.945265 CGGCCATTTTGCACCAACTG 60.945 55.000 2.24 0.00 0.00 3.16
2286 2848 8.492673 TCTGTTCATAACATAAGTGGTGATTC 57.507 34.615 0.00 0.00 41.26 2.52
2350 2916 6.824305 TCATTTTCTCCTCAGAATCAAACC 57.176 37.500 0.00 0.00 38.50 3.27
2357 2923 1.927174 CTCAGAATCAAACCGTAGCCG 59.073 52.381 0.00 0.00 0.00 5.52
2378 2963 3.198872 GGCGCTGAAGCTAGTTTTCTAT 58.801 45.455 7.64 0.00 39.32 1.98
2394 2979 8.273780 AGTTTTCTATAAAAGTGCCATCTCTG 57.726 34.615 0.00 0.00 36.96 3.35
2395 2980 7.337942 AGTTTTCTATAAAAGTGCCATCTCTGG 59.662 37.037 0.00 0.00 39.17 3.86
2396 2981 6.560003 TTCTATAAAAGTGCCATCTCTGGA 57.440 37.500 0.00 0.00 46.37 3.86
2421 3006 8.732746 AGTACTACACATTTTGAGACAGTTTT 57.267 30.769 0.00 0.00 0.00 2.43
2422 3007 9.826574 AGTACTACACATTTTGAGACAGTTTTA 57.173 29.630 0.00 0.00 0.00 1.52
2450 3035 7.800155 TTCAAATAAACCGATCATATGCTCA 57.200 32.000 7.30 0.00 0.00 4.26
2451 3036 7.800155 TCAAATAAACCGATCATATGCTCAA 57.200 32.000 7.30 0.00 0.00 3.02
2453 3038 8.128582 TCAAATAAACCGATCATATGCTCAAAC 58.871 33.333 7.30 0.00 0.00 2.93
2455 3040 7.750229 ATAAACCGATCATATGCTCAAACAT 57.250 32.000 7.30 0.00 0.00 2.71
2456 3041 5.428496 AACCGATCATATGCTCAAACATG 57.572 39.130 7.30 0.00 0.00 3.21
2457 3042 4.454678 ACCGATCATATGCTCAAACATGT 58.545 39.130 7.30 0.00 0.00 3.21
2459 3044 5.209977 CCGATCATATGCTCAAACATGTTG 58.790 41.667 12.82 6.76 0.00 3.33
2460 3045 5.209977 CGATCATATGCTCAAACATGTTGG 58.790 41.667 12.82 9.61 0.00 3.77
2559 3146 4.323257 CCGAGGAAGTACAACCATTACCTT 60.323 45.833 10.22 0.00 0.00 3.50
2864 3646 2.794981 CGTGCTTCCACTATCAGGTACG 60.795 54.545 0.00 0.00 39.86 3.67
2870 3652 1.067212 CCACTATCAGGTACGCCACTC 59.933 57.143 0.00 0.00 37.19 3.51
2885 3673 2.165167 CCACTCACATGAATGCCACTT 58.835 47.619 0.00 0.00 0.00 3.16
2887 3675 3.127548 CCACTCACATGAATGCCACTTAC 59.872 47.826 0.00 0.00 0.00 2.34
2898 3686 7.759489 TGAATGCCACTTACTATTGAGTTTT 57.241 32.000 0.00 0.00 37.10 2.43
2943 3735 6.629128 TGAACAACATGCTGAAAGAAAGAAA 58.371 32.000 2.44 0.00 34.07 2.52
2952 3744 5.743398 TGCTGAAAGAAAGAAACACATTTCG 59.257 36.000 0.00 0.00 42.75 3.46
3069 3883 2.034687 GTGTGCATGCAGGAGGGT 59.965 61.111 23.41 0.00 0.00 4.34
3219 4033 1.499049 GCTACTACGCCAGGTAATGC 58.501 55.000 0.00 0.00 0.00 3.56
3222 4036 2.240493 ACTACGCCAGGTAATGCATC 57.760 50.000 0.00 0.00 0.00 3.91
3223 4037 1.484653 ACTACGCCAGGTAATGCATCA 59.515 47.619 0.00 0.00 0.00 3.07
3230 4044 3.206150 CCAGGTAATGCATCACCACTAC 58.794 50.000 21.47 8.47 37.28 2.73
3232 4046 4.100963 CCAGGTAATGCATCACCACTACTA 59.899 45.833 21.47 0.00 37.28 1.82
3233 4047 5.050490 CAGGTAATGCATCACCACTACTAC 58.950 45.833 21.47 6.34 37.28 2.73
3234 4048 4.714802 AGGTAATGCATCACCACTACTACA 59.285 41.667 21.47 0.00 37.28 2.74
3235 4049 5.188948 AGGTAATGCATCACCACTACTACAA 59.811 40.000 21.47 0.00 37.28 2.41
3236 4050 5.878116 GGTAATGCATCACCACTACTACAAA 59.122 40.000 14.65 0.00 34.77 2.83
3237 4051 6.542370 GGTAATGCATCACCACTACTACAAAT 59.458 38.462 14.65 0.00 34.77 2.32
3240 4054 5.178061 TGCATCACCACTACTACAAATCTG 58.822 41.667 0.00 0.00 0.00 2.90
3241 4055 5.178797 GCATCACCACTACTACAAATCTGT 58.821 41.667 0.00 0.00 39.75 3.41
3242 4056 5.292101 GCATCACCACTACTACAAATCTGTC 59.708 44.000 0.00 0.00 36.96 3.51
3246 4060 6.873605 TCACCACTACTACAAATCTGTCAATG 59.126 38.462 0.00 0.00 36.96 2.82
3247 4061 6.650807 CACCACTACTACAAATCTGTCAATGT 59.349 38.462 0.00 0.00 36.96 2.71
3248 4062 6.874134 ACCACTACTACAAATCTGTCAATGTC 59.126 38.462 0.00 0.00 36.96 3.06
3251 4065 6.874134 ACTACTACAAATCTGTCAATGTCACC 59.126 38.462 0.00 0.00 36.96 4.02
3252 4066 4.690748 ACTACAAATCTGTCAATGTCACCG 59.309 41.667 0.00 0.00 36.96 4.94
3253 4067 3.476552 ACAAATCTGTCAATGTCACCGT 58.523 40.909 0.00 0.00 0.00 4.83
3254 4068 3.250762 ACAAATCTGTCAATGTCACCGTG 59.749 43.478 0.00 0.00 0.00 4.94
3255 4069 3.401033 AATCTGTCAATGTCACCGTGA 57.599 42.857 0.00 0.00 0.00 4.35
3256 4070 3.616956 ATCTGTCAATGTCACCGTGAT 57.383 42.857 4.13 0.00 0.00 3.06
3257 4071 2.959516 TCTGTCAATGTCACCGTGATC 58.040 47.619 4.13 0.00 0.00 2.92
3538 4356 4.215742 CCCTTCGCGGACGCCATA 62.216 66.667 6.13 0.00 39.84 2.74
3541 4359 4.517815 TTCGCGGACGCCATACCC 62.518 66.667 6.13 0.00 39.84 3.69
3568 4386 2.740714 GATCAGCGTGTTCGTGGCC 61.741 63.158 0.00 0.00 39.49 5.36
3925 4743 3.248602 CCTCACGTCCTGTTCTTTTCTTG 59.751 47.826 0.00 0.00 0.00 3.02
3941 4770 6.521821 TCTTTTCTTGTTCGTTTCGTTCTTTG 59.478 34.615 0.00 0.00 0.00 2.77
3968 4797 0.386113 TTTACCACGGCCACTTTTGC 59.614 50.000 2.24 0.00 0.00 3.68
4012 4841 6.898041 GTGAAACTTTATGCACACACATAGA 58.102 36.000 0.00 0.00 34.15 1.98
4013 4842 7.359595 GTGAAACTTTATGCACACACATAGAA 58.640 34.615 0.00 0.00 34.15 2.10
4014 4843 7.535258 GTGAAACTTTATGCACACACATAGAAG 59.465 37.037 0.00 0.00 34.15 2.85
4016 4845 5.560724 ACTTTATGCACACACATAGAAGGT 58.439 37.500 0.00 0.00 34.15 3.50
4017 4846 6.003950 ACTTTATGCACACACATAGAAGGTT 58.996 36.000 0.00 0.00 34.15 3.50
4018 4847 6.490040 ACTTTATGCACACACATAGAAGGTTT 59.510 34.615 0.00 0.00 34.15 3.27
4019 4848 6.892658 TTATGCACACACATAGAAGGTTTT 57.107 33.333 0.00 0.00 34.15 2.43
4020 4849 5.789643 ATGCACACACATAGAAGGTTTTT 57.210 34.783 0.00 0.00 0.00 1.94
4053 4882 9.855021 ATTTAGAAATATGTTTTTCGAAGTGGG 57.145 29.630 0.00 0.00 39.93 4.61
4054 4883 6.894339 AGAAATATGTTTTTCGAAGTGGGT 57.106 33.333 0.00 0.00 39.93 4.51
4056 4885 7.368059 AGAAATATGTTTTTCGAAGTGGGTTC 58.632 34.615 0.00 0.00 39.93 3.62
4057 4886 6.642707 AATATGTTTTTCGAAGTGGGTTCA 57.357 33.333 0.00 0.00 34.44 3.18
4058 4887 6.834168 ATATGTTTTTCGAAGTGGGTTCAT 57.166 33.333 0.00 1.48 34.44 2.57
4059 4888 7.931578 ATATGTTTTTCGAAGTGGGTTCATA 57.068 32.000 0.00 3.49 34.44 2.15
4061 4890 6.007936 TGTTTTTCGAAGTGGGTTCATATG 57.992 37.500 0.00 0.00 34.44 1.78
4064 4893 6.730960 TTTTCGAAGTGGGTTCATATGTAC 57.269 37.500 1.90 3.04 34.44 2.90
4065 4894 4.395959 TCGAAGTGGGTTCATATGTACC 57.604 45.455 20.26 20.26 34.44 3.34
4070 4899 1.134228 GGGTTCATATGTACCCGGGT 58.866 55.000 32.66 32.66 44.05 5.28
4071 4900 1.491754 GGGTTCATATGTACCCGGGTT 59.508 52.381 35.42 17.68 44.05 4.11
4072 4901 2.486013 GGGTTCATATGTACCCGGGTTC 60.486 54.545 35.42 28.38 44.05 3.62
4075 4904 4.062991 GTTCATATGTACCCGGGTTCATC 58.937 47.826 39.48 25.19 37.34 2.92
4076 4905 2.635915 TCATATGTACCCGGGTTCATCC 59.364 50.000 39.48 20.66 37.34 3.51
4081 4910 1.275421 TACCCGGGTTCATCCATGCA 61.275 55.000 35.42 6.33 38.11 3.96
4087 4926 1.106285 GGTTCATCCATGCACTTCCC 58.894 55.000 0.00 0.00 35.97 3.97
4113 4963 2.011947 TGCTATTGACAGTGCTGATGC 58.988 47.619 6.17 2.17 40.20 3.91
4116 4972 1.460504 ATTGACAGTGCTGATGCCAG 58.539 50.000 6.17 0.00 43.22 4.85
4139 4995 6.709846 CAGAACAGAAAAGAAAGAGAGATGGT 59.290 38.462 0.00 0.00 0.00 3.55
4149 5005 6.648192 AGAAAGAGAGATGGTAGTTTCCATG 58.352 40.000 2.82 0.00 46.72 3.66
4179 5036 3.569957 GCACACGAAGAAGCGATTC 57.430 52.632 4.98 4.98 34.83 2.52
4180 5037 0.790207 GCACACGAAGAAGCGATTCA 59.210 50.000 16.78 0.00 34.83 2.57
4181 5038 1.394917 GCACACGAAGAAGCGATTCAT 59.605 47.619 16.78 2.84 34.83 2.57
4182 5039 2.535732 GCACACGAAGAAGCGATTCATC 60.536 50.000 16.78 12.44 34.83 2.92
4183 5040 2.667969 CACACGAAGAAGCGATTCATCA 59.332 45.455 16.78 0.00 34.83 3.07
4206 5068 1.153208 CAGGGAGAGGTGATGCAGC 60.153 63.158 0.00 0.00 0.00 5.25
4228 5090 5.764686 AGCTTCACACAAAGTATCACATTCA 59.235 36.000 0.00 0.00 0.00 2.57
4229 5091 6.262944 AGCTTCACACAAAGTATCACATTCAA 59.737 34.615 0.00 0.00 0.00 2.69
4231 5093 5.984627 TCACACAAAGTATCACATTCAACG 58.015 37.500 0.00 0.00 0.00 4.10
4264 5127 9.555727 TGTTAACTTAAGCTGTTACTCAAGAAT 57.444 29.630 7.22 0.00 30.70 2.40
4291 5155 7.614974 TGATCCTGATACAAGATATGAGAGAGG 59.385 40.741 0.00 0.00 0.00 3.69
4296 5160 8.311395 TGATACAAGATATGAGAGAGGTGTTT 57.689 34.615 0.00 0.00 0.00 2.83
4297 5161 8.762645 TGATACAAGATATGAGAGAGGTGTTTT 58.237 33.333 0.00 0.00 0.00 2.43
4298 5162 9.606631 GATACAAGATATGAGAGAGGTGTTTTT 57.393 33.333 0.00 0.00 0.00 1.94
4301 5165 9.965902 ACAAGATATGAGAGAGGTGTTTTTATT 57.034 29.630 0.00 0.00 0.00 1.40
4308 5172 7.425606 TGAGAGAGGTGTTTTTATTTCTTTGC 58.574 34.615 0.00 0.00 0.00 3.68
4309 5173 6.438763 AGAGAGGTGTTTTTATTTCTTTGCG 58.561 36.000 0.00 0.00 0.00 4.85
4310 5174 6.262273 AGAGAGGTGTTTTTATTTCTTTGCGA 59.738 34.615 0.00 0.00 0.00 5.10
4311 5175 6.801575 AGAGGTGTTTTTATTTCTTTGCGAA 58.198 32.000 0.00 0.00 0.00 4.70
4312 5176 6.918022 AGAGGTGTTTTTATTTCTTTGCGAAG 59.082 34.615 7.44 7.44 32.21 3.79
4313 5177 6.801575 AGGTGTTTTTATTTCTTTGCGAAGA 58.198 32.000 12.62 12.62 40.07 2.87
4325 5189 7.531280 TTCTTTGCGAAGAAATATGAGAGAG 57.469 36.000 24.06 0.00 46.15 3.20
4326 5190 6.867550 TCTTTGCGAAGAAATATGAGAGAGA 58.132 36.000 14.27 0.00 38.91 3.10
4327 5191 7.495901 TCTTTGCGAAGAAATATGAGAGAGAT 58.504 34.615 14.27 0.00 38.91 2.75
4328 5192 7.437565 TCTTTGCGAAGAAATATGAGAGAGATG 59.562 37.037 14.27 0.00 38.91 2.90
4329 5193 6.154203 TGCGAAGAAATATGAGAGAGATGT 57.846 37.500 0.00 0.00 0.00 3.06
4330 5194 6.577103 TGCGAAGAAATATGAGAGAGATGTT 58.423 36.000 0.00 0.00 0.00 2.71
4363 5227 5.245531 TGTGAATGTACAAATCCTGAGACC 58.754 41.667 0.00 0.00 0.00 3.85
4395 5259 5.393461 GGAGAACTGAAAGGCATAAACATGG 60.393 44.000 0.00 0.00 39.30 3.66
4405 5269 3.316308 GGCATAAACATGGTTCAGCTAGG 59.684 47.826 16.66 0.00 0.00 3.02
4411 5275 8.902806 CATAAACATGGTTCAGCTAGGATTTTA 58.097 33.333 0.00 0.00 0.00 1.52
4437 5301 9.793252 ATTTGAATGATTCTTCGATAAACAAGG 57.207 29.630 6.73 0.00 0.00 3.61
4452 5316 5.640189 AAACAAGGATCTGAATGAGCTTG 57.360 39.130 0.00 0.00 0.00 4.01
4453 5317 3.015327 ACAAGGATCTGAATGAGCTTGC 58.985 45.455 0.00 0.00 0.00 4.01
4468 5332 1.713937 CTTGCAGCGTGGTGACAACA 61.714 55.000 2.76 0.00 46.06 3.33
4475 5339 2.946329 AGCGTGGTGACAACAAAATACA 59.054 40.909 0.00 0.00 46.06 2.29
4480 5375 4.502645 GTGGTGACAACAAAATACAACAGC 59.497 41.667 0.00 0.00 46.06 4.40
4483 5378 4.670621 GTGACAACAAAATACAACAGCGAG 59.329 41.667 0.00 0.00 0.00 5.03
4490 5385 5.009610 ACAAAATACAACAGCGAGGTGAAAT 59.990 36.000 9.41 0.00 36.95 2.17
4493 5388 0.592637 CAACAGCGAGGTGAAATGCA 59.407 50.000 9.41 0.00 36.95 3.96
4523 5426 2.491693 CAACGGGTTTGCATACCTGAAT 59.508 45.455 33.71 21.67 45.74 2.57
4524 5427 2.365582 ACGGGTTTGCATACCTGAATC 58.634 47.619 33.71 14.06 45.74 2.52
4525 5428 1.676006 CGGGTTTGCATACCTGAATCC 59.324 52.381 26.07 7.51 45.74 3.01
4538 5441 0.897863 TGAATCCTGGGGCCAAAACG 60.898 55.000 4.39 0.00 0.00 3.60
4539 5442 0.610785 GAATCCTGGGGCCAAAACGA 60.611 55.000 4.39 0.00 0.00 3.85
4554 5601 0.244450 AACGATGGCAAATGCACCTG 59.756 50.000 7.80 0.00 44.36 4.00
4573 5620 0.102481 GCATGCCAATCCAAGCAGAG 59.898 55.000 6.36 0.00 43.38 3.35
4577 5624 2.811410 TGCCAATCCAAGCAGAGATTT 58.189 42.857 0.00 0.00 33.08 2.17
4580 5627 3.383825 GCCAATCCAAGCAGAGATTTCAT 59.616 43.478 0.00 0.00 30.29 2.57
4581 5628 4.581824 GCCAATCCAAGCAGAGATTTCATA 59.418 41.667 0.00 0.00 30.29 2.15
4582 5629 5.243283 GCCAATCCAAGCAGAGATTTCATAT 59.757 40.000 0.00 0.00 30.29 1.78
4586 5633 5.371526 TCCAAGCAGAGATTTCATATCACC 58.628 41.667 0.00 0.00 0.00 4.02
4587 5634 5.131642 TCCAAGCAGAGATTTCATATCACCT 59.868 40.000 0.00 0.00 0.00 4.00
4588 5635 6.327365 TCCAAGCAGAGATTTCATATCACCTA 59.673 38.462 0.00 0.00 0.00 3.08
4589 5636 6.649973 CCAAGCAGAGATTTCATATCACCTAG 59.350 42.308 0.00 0.00 0.00 3.02
4591 5638 6.080682 AGCAGAGATTTCATATCACCTAGGA 58.919 40.000 17.98 0.00 0.00 2.94
4592 5639 6.211184 AGCAGAGATTTCATATCACCTAGGAG 59.789 42.308 17.98 8.08 0.00 3.69
4593 5640 6.014669 GCAGAGATTTCATATCACCTAGGAGT 60.015 42.308 17.98 3.06 0.00 3.85
4594 5641 7.177568 GCAGAGATTTCATATCACCTAGGAGTA 59.822 40.741 17.98 5.40 0.00 2.59
4595 5642 8.519526 CAGAGATTTCATATCACCTAGGAGTAC 58.480 40.741 17.98 0.00 0.00 2.73
4596 5643 8.228206 AGAGATTTCATATCACCTAGGAGTACA 58.772 37.037 17.98 0.00 0.00 2.90
4597 5644 8.964533 AGATTTCATATCACCTAGGAGTACAT 57.035 34.615 17.98 0.00 0.00 2.29
4611 5692 3.181474 GGAGTACATAGGAGCAACACCTC 60.181 52.174 0.00 0.00 38.76 3.85
4619 5700 2.107204 AGGAGCAACACCTCAGATTTGT 59.893 45.455 0.00 0.00 33.47 2.83
4620 5701 2.227388 GGAGCAACACCTCAGATTTGTG 59.773 50.000 0.00 0.00 33.47 3.33
4621 5702 3.141398 GAGCAACACCTCAGATTTGTGA 58.859 45.455 0.00 0.00 34.18 3.58
4639 5720 9.869844 GATTTGTGATAATTTATCAAGGACTCG 57.130 33.333 18.33 0.00 45.91 4.18
4645 5726 3.627395 TTTATCAAGGACTCGCACCAT 57.373 42.857 0.00 0.00 0.00 3.55
4657 5738 4.145052 ACTCGCACCATACATCAGATCTA 58.855 43.478 0.00 0.00 0.00 1.98
4662 7633 6.434340 TCGCACCATACATCAGATCTAGTAAT 59.566 38.462 0.00 0.00 0.00 1.89
4688 7659 3.006752 TGAAACATTGAATTGTGGGAGCC 59.993 43.478 0.00 0.00 0.00 4.70
4691 7662 2.564062 ACATTGAATTGTGGGAGCCTTG 59.436 45.455 0.00 0.00 0.00 3.61
4697 7668 0.257328 TTGTGGGAGCCTTGTCACAA 59.743 50.000 0.00 0.00 44.57 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.821332 GCTGGAGATGGAAAGGCGG 60.821 63.158 0.00 0.00 0.00 6.13
1 2 0.813210 GAGCTGGAGATGGAAAGGCG 60.813 60.000 0.00 0.00 0.00 5.52
2 3 0.254178 TGAGCTGGAGATGGAAAGGC 59.746 55.000 0.00 0.00 0.00 4.35
3 4 1.741732 CGTGAGCTGGAGATGGAAAGG 60.742 57.143 0.00 0.00 0.00 3.11
4 5 1.649664 CGTGAGCTGGAGATGGAAAG 58.350 55.000 0.00 0.00 0.00 2.62
5 6 3.840831 CGTGAGCTGGAGATGGAAA 57.159 52.632 0.00 0.00 0.00 3.13
23 24 3.869272 CCTCAATCACGCAGGCGC 61.869 66.667 14.32 0.00 44.19 6.53
24 25 3.197790 CCCTCAATCACGCAGGCG 61.198 66.667 12.71 12.71 46.03 5.52
25 26 1.817099 CTCCCTCAATCACGCAGGC 60.817 63.158 0.00 0.00 0.00 4.85
26 27 1.153289 CCTCCCTCAATCACGCAGG 60.153 63.158 0.00 0.00 0.00 4.85
27 28 1.153289 CCCTCCCTCAATCACGCAG 60.153 63.158 0.00 0.00 0.00 5.18
28 29 1.899437 GACCCTCCCTCAATCACGCA 61.899 60.000 0.00 0.00 0.00 5.24
29 30 1.153349 GACCCTCCCTCAATCACGC 60.153 63.158 0.00 0.00 0.00 5.34
30 31 1.141881 CGACCCTCCCTCAATCACG 59.858 63.158 0.00 0.00 0.00 4.35
31 32 1.522569 CCGACCCTCCCTCAATCAC 59.477 63.158 0.00 0.00 0.00 3.06
32 33 1.689233 CCCGACCCTCCCTCAATCA 60.689 63.158 0.00 0.00 0.00 2.57
33 34 1.382695 TCCCGACCCTCCCTCAATC 60.383 63.158 0.00 0.00 0.00 2.67
34 35 1.383248 CTCCCGACCCTCCCTCAAT 60.383 63.158 0.00 0.00 0.00 2.57
35 36 2.038975 CTCCCGACCCTCCCTCAA 59.961 66.667 0.00 0.00 0.00 3.02
36 37 4.075793 CCTCCCGACCCTCCCTCA 62.076 72.222 0.00 0.00 0.00 3.86
63 64 1.227943 TCGTCTGCCTGCTGCTTTT 60.228 52.632 0.00 0.00 42.00 2.27
84 85 6.183360 GGTTTCCGATTAGTTTATCAACTGGG 60.183 42.308 2.44 0.00 43.54 4.45
104 107 2.073816 TCCGCTCTCATTTTCGGTTTC 58.926 47.619 0.00 0.00 42.28 2.78
112 115 1.945394 GCATCACATCCGCTCTCATTT 59.055 47.619 0.00 0.00 0.00 2.32
219 240 3.074594 GGTGGCTACCATGTTACCG 57.925 57.895 15.42 0.00 46.71 4.02
256 277 6.309737 CGTTCTTACCATTTCTTTACGTAGCT 59.690 38.462 0.00 0.00 0.00 3.32
257 278 6.454715 CCGTTCTTACCATTTCTTTACGTAGC 60.455 42.308 0.00 0.00 0.00 3.58
259 280 5.348451 GCCGTTCTTACCATTTCTTTACGTA 59.652 40.000 0.00 0.00 0.00 3.57
261 282 4.152759 TGCCGTTCTTACCATTTCTTTACG 59.847 41.667 0.00 0.00 0.00 3.18
275 296 1.682854 CCATGCCAATATGCCGTTCTT 59.317 47.619 0.00 0.00 0.00 2.52
280 301 1.246056 CCTCCCATGCCAATATGCCG 61.246 60.000 0.00 0.00 0.00 5.69
296 317 0.806492 GCAGACCCGAACGATTCCTC 60.806 60.000 0.00 0.00 0.00 3.71
312 343 0.670546 TTCTTTCTTCTCCGGCGCAG 60.671 55.000 10.83 4.65 0.00 5.18
332 364 2.881352 CGTCTCGCTTCGCTTCCC 60.881 66.667 0.00 0.00 0.00 3.97
334 366 2.437343 CCACGTCTCGCTTCGCTTC 61.437 63.158 0.00 0.00 0.00 3.86
360 396 0.172803 GTCCCGCTTTCGCTTCTCTA 59.827 55.000 0.00 0.00 0.00 2.43
366 402 4.436998 CTCCGTCCCGCTTTCGCT 62.437 66.667 0.00 0.00 0.00 4.93
368 404 2.202623 CTCTCCGTCCCGCTTTCG 60.203 66.667 0.00 0.00 0.00 3.46
450 488 4.811024 GGAAAAGAAAAGAAAGGTGCAAGG 59.189 41.667 0.00 0.00 0.00 3.61
452 490 4.429108 CGGAAAAGAAAAGAAAGGTGCAA 58.571 39.130 0.00 0.00 0.00 4.08
454 492 2.794910 GCGGAAAAGAAAAGAAAGGTGC 59.205 45.455 0.00 0.00 0.00 5.01
456 494 3.028130 TGGCGGAAAAGAAAAGAAAGGT 58.972 40.909 0.00 0.00 0.00 3.50
570 656 4.202223 TGGGAAATATACAACTCCTCTCGC 60.202 45.833 0.00 0.00 0.00 5.03
573 659 5.131142 CCAGTGGGAAATATACAACTCCTCT 59.869 44.000 0.00 0.00 35.59 3.69
604 690 4.838486 GTGACGAGCGAGCGAGGG 62.838 72.222 4.36 0.00 34.83 4.30
687 778 1.115326 TGGAGCGGGATGATGACGAT 61.115 55.000 0.00 0.00 0.00 3.73
753 844 3.151022 GTCCCTCTCAGCCCCTCG 61.151 72.222 0.00 0.00 0.00 4.63
810 901 2.012673 GTGCTGCTTGCTATTGCTAGT 58.987 47.619 11.50 0.00 42.51 2.57
847 938 3.282745 CTTGCTTGCTGGCTGGCTG 62.283 63.158 2.00 2.91 0.00 4.85
855 946 0.524862 CCTGGTTAGCTTGCTTGCTG 59.475 55.000 12.94 0.00 43.87 4.41
856 947 0.401738 TCCTGGTTAGCTTGCTTGCT 59.598 50.000 0.00 8.85 46.11 3.91
857 948 0.523519 GTCCTGGTTAGCTTGCTTGC 59.476 55.000 0.00 0.00 0.00 4.01
858 949 1.168714 GGTCCTGGTTAGCTTGCTTG 58.831 55.000 0.00 0.00 0.00 4.01
859 950 0.321653 CGGTCCTGGTTAGCTTGCTT 60.322 55.000 0.00 0.00 0.00 3.91
948 1057 2.046892 CCTTGACCGGCTCAGTGG 60.047 66.667 0.00 7.45 0.00 4.00
949 1058 1.079543 CTCCTTGACCGGCTCAGTG 60.080 63.158 0.00 2.21 0.00 3.66
956 1065 2.982130 CTGGACCTCCTTGACCGG 59.018 66.667 0.00 0.00 36.82 5.28
957 1066 2.266055 GCTGGACCTCCTTGACCG 59.734 66.667 0.00 0.00 36.82 4.79
1154 1307 0.250770 GCCCAAGAACGGAAGAAGGT 60.251 55.000 0.00 0.00 0.00 3.50
1164 1317 2.166459 GGATTTAGCAAGGCCCAAGAAC 59.834 50.000 0.00 0.00 0.00 3.01
1216 1370 1.248101 CGGGGCCAATTTCGGTTTCT 61.248 55.000 4.39 0.00 0.00 2.52
1347 1507 1.153369 GCGGGACAGATGCAGCTAA 60.153 57.895 3.06 0.00 34.54 3.09
1368 1528 3.757248 ATTGGATGGGAGCGTCGGC 62.757 63.158 0.00 0.00 40.37 5.54
1435 1595 3.142838 GGCTGCCGGGTACGAGTA 61.143 66.667 1.35 0.00 44.60 2.59
1465 1638 2.751479 GCATTATTGATCCCGGGGAACA 60.751 50.000 23.50 21.39 34.34 3.18
1467 1640 1.496857 TGCATTATTGATCCCGGGGAA 59.503 47.619 23.50 11.94 34.34 3.97
1644 1826 2.537143 ACTGAATTCACCTACCGACCT 58.463 47.619 3.38 0.00 0.00 3.85
1670 1852 4.033009 TGTAGCATCAGAGAGGGAATTCA 58.967 43.478 7.93 0.00 0.00 2.57
1683 1869 4.949856 TGATGTCTGTACTCTGTAGCATCA 59.050 41.667 0.00 0.00 39.03 3.07
1689 1875 6.473758 AGTGTACTGATGTCTGTACTCTGTA 58.526 40.000 22.53 7.87 45.03 2.74
1690 1876 5.317808 AGTGTACTGATGTCTGTACTCTGT 58.682 41.667 22.53 9.36 45.03 3.41
1691 1877 5.888691 AGTGTACTGATGTCTGTACTCTG 57.111 43.478 22.53 0.00 45.03 3.35
1692 1878 4.156922 GCAGTGTACTGATGTCTGTACTCT 59.843 45.833 22.35 21.06 46.30 3.24
1693 1879 4.082733 TGCAGTGTACTGATGTCTGTACTC 60.083 45.833 22.35 19.76 46.59 2.59
1694 1880 3.826729 TGCAGTGTACTGATGTCTGTACT 59.173 43.478 22.35 9.47 46.59 2.73
1695 1881 4.174411 TGCAGTGTACTGATGTCTGTAC 57.826 45.455 15.78 17.93 46.59 2.90
1786 2341 3.385749 ATTACGGGAGCTGTGGCCG 62.386 63.158 0.00 0.00 39.73 6.13
1853 2408 2.529619 GCTCCTCGCGAGAAATGCC 61.530 63.158 36.59 14.37 41.63 4.40
1905 2460 3.065233 CGAAAATTCATCCGATGGAGCAA 59.935 43.478 8.54 0.00 34.05 3.91
1918 2473 1.309950 TTGCGTCCACCGAAAATTCA 58.690 45.000 0.00 0.00 39.56 2.57
1920 2475 1.950909 TCTTTGCGTCCACCGAAAATT 59.049 42.857 0.00 0.00 43.06 1.82
1922 2477 1.533731 GATCTTTGCGTCCACCGAAAA 59.466 47.619 0.00 0.00 41.82 2.29
1923 2478 1.153353 GATCTTTGCGTCCACCGAAA 58.847 50.000 0.00 0.00 39.56 3.46
1926 2481 2.452813 CGGATCTTTGCGTCCACCG 61.453 63.158 0.00 0.00 40.40 4.94
2050 2611 0.955919 GTCAGCTTTCAACGGGAGGG 60.956 60.000 0.00 0.00 0.00 4.30
2064 2625 0.234884 GTGGTTGTTAGCACGTCAGC 59.765 55.000 0.00 0.00 42.26 4.26
2153 2715 8.267620 ACAAAGATCAATCCCTATCACTATCA 57.732 34.615 0.00 0.00 0.00 2.15
2154 2716 9.868277 CTACAAAGATCAATCCCTATCACTATC 57.132 37.037 0.00 0.00 0.00 2.08
2155 2717 8.317679 GCTACAAAGATCAATCCCTATCACTAT 58.682 37.037 0.00 0.00 0.00 2.12
2156 2718 7.290014 TGCTACAAAGATCAATCCCTATCACTA 59.710 37.037 0.00 0.00 0.00 2.74
2157 2719 6.100279 TGCTACAAAGATCAATCCCTATCACT 59.900 38.462 0.00 0.00 0.00 3.41
2158 2720 6.291377 TGCTACAAAGATCAATCCCTATCAC 58.709 40.000 0.00 0.00 0.00 3.06
2192 2754 1.667724 CTCACCAACCATTCGATGCTC 59.332 52.381 0.00 0.00 0.00 4.26
2193 2755 1.742761 CTCACCAACCATTCGATGCT 58.257 50.000 0.00 0.00 0.00 3.79
2194 2756 0.099436 GCTCACCAACCATTCGATGC 59.901 55.000 0.00 0.00 0.00 3.91
2195 2757 1.399440 CAGCTCACCAACCATTCGATG 59.601 52.381 0.00 0.00 0.00 3.84
2248 2810 2.353323 TGAACAGATTAGCAGCAGCAG 58.647 47.619 3.17 0.00 45.49 4.24
2249 2811 2.477845 TGAACAGATTAGCAGCAGCA 57.522 45.000 3.17 0.00 45.49 4.41
2250 2812 4.333649 TGTTATGAACAGATTAGCAGCAGC 59.666 41.667 0.00 0.00 36.25 5.25
2286 2848 4.625972 TGCTCATATTTGTGCATGACAG 57.374 40.909 8.54 0.00 44.86 3.51
2357 2923 6.183360 TTTTATAGAAAACTAGCTTCAGCGCC 60.183 38.462 2.29 0.00 36.51 6.53
2359 2925 7.900352 CACTTTTATAGAAAACTAGCTTCAGCG 59.100 37.037 0.00 0.00 36.98 5.18
2360 2926 7.694367 GCACTTTTATAGAAAACTAGCTTCAGC 59.306 37.037 0.00 0.00 34.45 4.26
2366 2932 8.214721 AGATGGCACTTTTATAGAAAACTAGC 57.785 34.615 0.00 0.00 31.23 3.42
2378 2963 4.777896 AGTACTCCAGAGATGGCACTTTTA 59.222 41.667 0.70 0.00 0.00 1.52
2394 2979 6.456501 ACTGTCTCAAAATGTGTAGTACTCC 58.543 40.000 0.00 0.00 0.00 3.85
2395 2980 7.948278 AACTGTCTCAAAATGTGTAGTACTC 57.052 36.000 0.00 0.00 0.00 2.59
2396 2981 8.732746 AAAACTGTCTCAAAATGTGTAGTACT 57.267 30.769 0.00 0.00 0.00 2.73
2423 3008 9.683069 GAGCATATGATCGGTTTATTTGAAAAT 57.317 29.630 6.97 0.00 0.00 1.82
2424 3009 8.681806 TGAGCATATGATCGGTTTATTTGAAAA 58.318 29.630 15.76 0.00 32.18 2.29
2425 3010 8.219546 TGAGCATATGATCGGTTTATTTGAAA 57.780 30.769 15.76 0.00 32.18 2.69
2426 3011 7.800155 TGAGCATATGATCGGTTTATTTGAA 57.200 32.000 15.76 0.00 32.18 2.69
2427 3012 7.800155 TTGAGCATATGATCGGTTTATTTGA 57.200 32.000 15.76 0.00 32.18 2.69
2428 3013 7.914871 TGTTTGAGCATATGATCGGTTTATTTG 59.085 33.333 15.76 0.00 32.18 2.32
2447 3032 3.256383 TGAAGCCATCCAACATGTTTGAG 59.744 43.478 16.51 6.54 0.00 3.02
2448 3033 3.229293 TGAAGCCATCCAACATGTTTGA 58.771 40.909 14.13 14.13 0.00 2.69
2450 3035 2.564062 CCTGAAGCCATCCAACATGTTT 59.436 45.455 8.77 0.00 0.00 2.83
2451 3036 2.173519 CCTGAAGCCATCCAACATGTT 58.826 47.619 4.92 4.92 0.00 2.71
2453 3038 1.108776 CCCTGAAGCCATCCAACATG 58.891 55.000 0.00 0.00 0.00 3.21
2455 3040 0.776810 TTCCCTGAAGCCATCCAACA 59.223 50.000 0.00 0.00 0.00 3.33
2456 3041 1.177401 GTTCCCTGAAGCCATCCAAC 58.823 55.000 0.00 0.00 0.00 3.77
2457 3042 0.322456 CGTTCCCTGAAGCCATCCAA 60.322 55.000 0.00 0.00 0.00 3.53
2459 3044 2.115291 GCGTTCCCTGAAGCCATCC 61.115 63.158 0.00 0.00 0.00 3.51
2460 3045 3.502572 GCGTTCCCTGAAGCCATC 58.497 61.111 0.00 0.00 0.00 3.51
2559 3146 0.538977 ACCGGTTGTCCTTCTCGAGA 60.539 55.000 12.08 12.08 0.00 4.04
2760 3347 2.202570 GTCGCCGCGATGTACTGT 60.203 61.111 20.03 0.00 38.42 3.55
2870 3652 6.317140 ACTCAATAGTAAGTGGCATTCATGTG 59.683 38.462 0.00 0.00 32.84 3.21
2917 3705 6.441274 TCTTTCTTTCAGCATGTTGTTCATC 58.559 36.000 9.54 0.00 37.40 2.92
3069 3883 4.202567 GCATAGGGAGGAATGGTTATGGAA 60.203 45.833 0.00 0.00 0.00 3.53
3219 4033 6.398095 TGACAGATTTGTAGTAGTGGTGATG 58.602 40.000 0.00 0.00 37.76 3.07
3222 4036 6.650807 ACATTGACAGATTTGTAGTAGTGGTG 59.349 38.462 0.00 0.00 37.76 4.17
3223 4037 6.769512 ACATTGACAGATTTGTAGTAGTGGT 58.230 36.000 0.00 0.00 37.76 4.16
3230 4044 4.690748 ACGGTGACATTGACAGATTTGTAG 59.309 41.667 0.00 0.00 37.76 2.74
3232 4046 3.250762 CACGGTGACATTGACAGATTTGT 59.749 43.478 0.74 0.00 41.18 2.83
3233 4047 3.498018 TCACGGTGACATTGACAGATTTG 59.502 43.478 6.76 0.00 0.00 2.32
3234 4048 3.738982 TCACGGTGACATTGACAGATTT 58.261 40.909 6.76 0.00 0.00 2.17
3235 4049 3.401033 TCACGGTGACATTGACAGATT 57.599 42.857 6.76 0.00 0.00 2.40
3236 4050 3.525537 GATCACGGTGACATTGACAGAT 58.474 45.455 13.92 0.00 0.00 2.90
3237 4051 2.671070 CGATCACGGTGACATTGACAGA 60.671 50.000 13.92 0.00 35.72 3.41
3264 4078 3.369756 TCGTTAGCATTTCATCGGTTGTC 59.630 43.478 0.00 0.00 0.00 3.18
3265 4079 3.124636 GTCGTTAGCATTTCATCGGTTGT 59.875 43.478 0.00 0.00 0.00 3.32
3266 4080 3.670203 GTCGTTAGCATTTCATCGGTTG 58.330 45.455 0.00 0.00 0.00 3.77
3268 4082 1.924524 CGTCGTTAGCATTTCATCGGT 59.075 47.619 0.00 0.00 0.00 4.69
3269 4083 1.257936 CCGTCGTTAGCATTTCATCGG 59.742 52.381 0.00 0.00 0.00 4.18
3270 4084 1.924524 ACCGTCGTTAGCATTTCATCG 59.075 47.619 0.00 0.00 0.00 3.84
3271 4085 2.671396 ACACCGTCGTTAGCATTTCATC 59.329 45.455 0.00 0.00 0.00 2.92
3272 4086 2.415168 CACACCGTCGTTAGCATTTCAT 59.585 45.455 0.00 0.00 0.00 2.57
3276 4090 0.319083 TCCACACCGTCGTTAGCATT 59.681 50.000 0.00 0.00 0.00 3.56
3538 4356 2.373707 GCTGATCTGCTCCCAGGGT 61.374 63.158 16.60 0.00 39.61 4.34
3541 4359 1.521010 CACGCTGATCTGCTCCCAG 60.521 63.158 20.58 8.59 40.54 4.45
3751 4569 1.374758 CTTCAGAAACGCGCCCTCT 60.375 57.895 5.73 2.07 0.00 3.69
3763 4581 2.927856 TTCTGGCCGGGCTTCAGA 60.928 61.111 29.87 20.44 35.95 3.27
3925 4743 6.606965 AAAGAAACAAAGAACGAAACGAAC 57.393 33.333 0.00 0.00 0.00 3.95
3968 4797 1.015607 TGCTGACTGCTGCATACACG 61.016 55.000 1.31 0.00 42.93 4.49
3982 4811 3.882288 TGTGCATAAAGTTTCACTGCTGA 59.118 39.130 14.90 0.00 34.02 4.26
3989 4818 7.308529 CCTTCTATGTGTGTGCATAAAGTTTCA 60.309 37.037 0.00 0.00 31.76 2.69
3990 4819 7.023575 CCTTCTATGTGTGTGCATAAAGTTTC 58.976 38.462 0.00 0.00 31.76 2.78
3991 4820 6.490040 ACCTTCTATGTGTGTGCATAAAGTTT 59.510 34.615 0.00 0.00 31.76 2.66
3992 4821 6.003950 ACCTTCTATGTGTGTGCATAAAGTT 58.996 36.000 0.00 0.00 31.76 2.66
3993 4822 5.560724 ACCTTCTATGTGTGTGCATAAAGT 58.439 37.500 0.00 0.00 31.76 2.66
3994 4823 6.500684 AACCTTCTATGTGTGTGCATAAAG 57.499 37.500 0.00 0.00 31.76 1.85
3996 4825 6.892658 AAAACCTTCTATGTGTGTGCATAA 57.107 33.333 0.00 0.00 31.76 1.90
3997 4826 6.892658 AAAAACCTTCTATGTGTGTGCATA 57.107 33.333 0.00 0.00 0.00 3.14
4027 4856 9.855021 CCCACTTCGAAAAACATATTTCTAAAT 57.145 29.630 0.00 0.00 37.20 1.40
4028 4857 8.852135 ACCCACTTCGAAAAACATATTTCTAAA 58.148 29.630 0.00 0.00 37.20 1.85
4029 4858 8.398878 ACCCACTTCGAAAAACATATTTCTAA 57.601 30.769 0.00 0.00 37.20 2.10
4031 4860 6.894339 ACCCACTTCGAAAAACATATTTCT 57.106 33.333 0.00 0.00 37.20 2.52
4034 4863 6.642707 TGAACCCACTTCGAAAAACATATT 57.357 33.333 0.00 0.00 0.00 1.28
4035 4864 6.834168 ATGAACCCACTTCGAAAAACATAT 57.166 33.333 0.00 0.00 0.00 1.78
4036 4865 7.392113 ACATATGAACCCACTTCGAAAAACATA 59.608 33.333 10.38 3.85 0.00 2.29
4037 4866 6.208599 ACATATGAACCCACTTCGAAAAACAT 59.791 34.615 10.38 1.83 0.00 2.71
4038 4867 5.533154 ACATATGAACCCACTTCGAAAAACA 59.467 36.000 10.38 0.00 0.00 2.83
4039 4868 6.009115 ACATATGAACCCACTTCGAAAAAC 57.991 37.500 10.38 0.00 0.00 2.43
4041 4870 5.644636 GGTACATATGAACCCACTTCGAAAA 59.355 40.000 10.38 0.00 0.00 2.29
4053 4882 3.547054 TGAACCCGGGTACATATGAAC 57.453 47.619 30.52 10.22 0.00 3.18
4054 4883 3.071892 GGATGAACCCGGGTACATATGAA 59.928 47.826 30.52 6.75 0.00 2.57
4056 4885 2.370519 TGGATGAACCCGGGTACATATG 59.629 50.000 30.52 0.00 38.00 1.78
4057 4886 2.696775 TGGATGAACCCGGGTACATAT 58.303 47.619 30.52 18.50 38.00 1.78
4058 4887 2.177811 TGGATGAACCCGGGTACATA 57.822 50.000 30.52 14.16 38.00 2.29
4059 4888 1.142870 CATGGATGAACCCGGGTACAT 59.857 52.381 30.52 21.91 38.00 2.29
4061 4890 0.818040 GCATGGATGAACCCGGGTAC 60.818 60.000 30.52 18.16 38.00 3.34
4064 4893 2.120909 GTGCATGGATGAACCCGGG 61.121 63.158 22.25 22.25 38.00 5.73
4065 4894 0.680921 AAGTGCATGGATGAACCCGG 60.681 55.000 0.00 0.00 37.01 5.73
4066 4895 0.734889 GAAGTGCATGGATGAACCCG 59.265 55.000 0.00 0.00 37.01 5.28
4070 4899 0.033208 GGGGGAAGTGCATGGATGAA 60.033 55.000 0.00 0.00 0.00 2.57
4071 4900 1.614711 GGGGGAAGTGCATGGATGA 59.385 57.895 0.00 0.00 0.00 2.92
4072 4901 1.825191 CGGGGGAAGTGCATGGATG 60.825 63.158 0.00 0.00 0.00 3.51
4075 4904 2.438434 GACGGGGGAAGTGCATGG 60.438 66.667 0.00 0.00 0.00 3.66
4076 4905 1.746615 CAGACGGGGGAAGTGCATG 60.747 63.158 0.00 0.00 0.00 4.06
4081 4910 0.541863 CAATAGCAGACGGGGGAAGT 59.458 55.000 0.00 0.00 0.00 3.01
4087 4926 1.645034 CACTGTCAATAGCAGACGGG 58.355 55.000 7.04 0.00 44.69 5.28
4113 4963 6.149142 CCATCTCTCTTTCTTTTCTGTTCTGG 59.851 42.308 0.00 0.00 0.00 3.86
4116 4972 7.875554 ACTACCATCTCTCTTTCTTTTCTGTTC 59.124 37.037 0.00 0.00 0.00 3.18
4139 4995 4.556233 CGTCAGAACTCACATGGAAACTA 58.444 43.478 0.00 0.00 0.00 2.24
4149 5005 0.594028 TCGTGTGCGTCAGAACTCAC 60.594 55.000 0.00 0.00 40.70 3.51
4177 5034 3.390311 CACCTCTCCCTGATGATGATGAA 59.610 47.826 0.00 0.00 0.00 2.57
4179 5036 2.970640 TCACCTCTCCCTGATGATGATG 59.029 50.000 0.00 0.00 0.00 3.07
4180 5037 3.341318 TCACCTCTCCCTGATGATGAT 57.659 47.619 0.00 0.00 0.00 2.45
4181 5038 2.854736 TCACCTCTCCCTGATGATGA 57.145 50.000 0.00 0.00 0.00 2.92
4182 5039 2.550423 GCATCACCTCTCCCTGATGATG 60.550 54.545 11.02 7.92 44.51 3.07
4183 5040 1.698532 GCATCACCTCTCCCTGATGAT 59.301 52.381 11.02 0.00 44.51 2.45
4206 5068 6.574832 CGTTGAATGTGATACTTTGTGTGAAG 59.425 38.462 0.00 0.00 0.00 3.02
4228 5090 5.462398 CAGCTTAAGTTAACAGTCTGTCGTT 59.538 40.000 5.82 0.67 0.00 3.85
4229 5091 4.982916 CAGCTTAAGTTAACAGTCTGTCGT 59.017 41.667 5.82 0.00 0.00 4.34
4231 5093 6.846325 AACAGCTTAAGTTAACAGTCTGTC 57.154 37.500 5.82 0.00 33.03 3.51
4264 5127 8.946797 TCTCTCATATCTTGTATCAGGATCAA 57.053 34.615 0.00 0.00 32.55 2.57
4265 5128 7.614974 CCTCTCTCATATCTTGTATCAGGATCA 59.385 40.741 0.00 0.00 32.55 2.92
4284 5148 6.578919 CGCAAAGAAATAAAAACACCTCTCTC 59.421 38.462 0.00 0.00 0.00 3.20
4285 5149 6.262273 TCGCAAAGAAATAAAAACACCTCTCT 59.738 34.615 0.00 0.00 0.00 3.10
4302 5166 6.867550 TCTCTCTCATATTTCTTCGCAAAGA 58.132 36.000 0.00 0.00 39.78 2.52
4303 5167 7.224362 ACATCTCTCTCATATTTCTTCGCAAAG 59.776 37.037 0.00 0.00 0.00 2.77
4304 5168 7.044181 ACATCTCTCTCATATTTCTTCGCAAA 58.956 34.615 0.00 0.00 0.00 3.68
4305 5169 6.577103 ACATCTCTCTCATATTTCTTCGCAA 58.423 36.000 0.00 0.00 0.00 4.85
4306 5170 6.154203 ACATCTCTCTCATATTTCTTCGCA 57.846 37.500 0.00 0.00 0.00 5.10
4307 5171 6.073873 CCAACATCTCTCTCATATTTCTTCGC 60.074 42.308 0.00 0.00 0.00 4.70
4308 5172 6.983307 ACCAACATCTCTCTCATATTTCTTCG 59.017 38.462 0.00 0.00 0.00 3.79
4309 5173 7.254727 GCACCAACATCTCTCTCATATTTCTTC 60.255 40.741 0.00 0.00 0.00 2.87
4310 5174 6.541641 GCACCAACATCTCTCTCATATTTCTT 59.458 38.462 0.00 0.00 0.00 2.52
4311 5175 6.054295 GCACCAACATCTCTCTCATATTTCT 58.946 40.000 0.00 0.00 0.00 2.52
4312 5176 5.819379 TGCACCAACATCTCTCTCATATTTC 59.181 40.000 0.00 0.00 0.00 2.17
4313 5177 5.748402 TGCACCAACATCTCTCTCATATTT 58.252 37.500 0.00 0.00 0.00 1.40
4314 5178 5.363562 TGCACCAACATCTCTCTCATATT 57.636 39.130 0.00 0.00 0.00 1.28
4315 5179 5.121811 GTTGCACCAACATCTCTCTCATAT 58.878 41.667 3.40 0.00 43.09 1.78
4316 5180 4.507710 GTTGCACCAACATCTCTCTCATA 58.492 43.478 3.40 0.00 43.09 2.15
4317 5181 3.341823 GTTGCACCAACATCTCTCTCAT 58.658 45.455 3.40 0.00 43.09 2.90
4318 5182 2.771089 GTTGCACCAACATCTCTCTCA 58.229 47.619 3.40 0.00 43.09 3.27
4328 5192 3.096489 ACATTCACATGTTGCACCAAC 57.904 42.857 0.00 1.33 41.16 3.77
4329 5193 3.633986 TGTACATTCACATGTTGCACCAA 59.366 39.130 0.00 0.00 41.16 3.67
4330 5194 3.217626 TGTACATTCACATGTTGCACCA 58.782 40.909 0.00 0.00 41.16 4.17
4363 5227 3.365364 GCCTTTCAGTTCTCCGATTGTTG 60.365 47.826 0.00 0.00 0.00 3.33
4411 5275 9.793252 CCTTGTTTATCGAAGAATCATTCAAAT 57.207 29.630 0.00 0.00 43.58 2.32
4452 5316 0.179150 TTTTGTTGTCACCACGCTGC 60.179 50.000 0.00 0.00 0.00 5.25
4453 5317 2.490328 ATTTTGTTGTCACCACGCTG 57.510 45.000 0.00 0.00 0.00 5.18
4458 5322 4.677584 GCTGTTGTATTTTGTTGTCACCA 58.322 39.130 0.00 0.00 0.00 4.17
4468 5332 5.460646 CATTTCACCTCGCTGTTGTATTTT 58.539 37.500 0.00 0.00 0.00 1.82
4475 5339 1.538047 ATGCATTTCACCTCGCTGTT 58.462 45.000 0.00 0.00 0.00 3.16
4480 5375 5.639757 TGAATAACAATGCATTTCACCTCG 58.360 37.500 9.83 0.00 0.00 4.63
4483 5378 5.062058 CCGTTGAATAACAATGCATTTCACC 59.938 40.000 9.83 2.41 42.30 4.02
4490 5385 4.302455 CAAACCCGTTGAATAACAATGCA 58.698 39.130 0.00 0.00 42.30 3.96
4493 5388 4.592485 TGCAAACCCGTTGAATAACAAT 57.408 36.364 0.00 0.00 39.87 2.71
4523 5426 1.304052 CATCGTTTTGGCCCCAGGA 60.304 57.895 0.00 0.00 0.00 3.86
4524 5427 2.350458 CCATCGTTTTGGCCCCAGG 61.350 63.158 0.00 0.00 0.00 4.45
4525 5428 3.287445 CCATCGTTTTGGCCCCAG 58.713 61.111 0.00 0.00 0.00 4.45
4538 5441 4.507879 GCAGGTGCATTTGCCATC 57.492 55.556 12.81 0.00 41.18 3.51
4548 5451 1.890625 TTGGATTGGCATGCAGGTGC 61.891 55.000 21.36 9.85 44.31 5.01
4554 5601 0.102481 CTCTGCTTGGATTGGCATGC 59.898 55.000 9.90 9.90 37.83 4.06
4557 5604 2.519771 AATCTCTGCTTGGATTGGCA 57.480 45.000 0.00 0.00 36.94 4.92
4577 5624 7.584396 TCCTATGTACTCCTAGGTGATATGA 57.416 40.000 17.66 5.22 36.64 2.15
4580 5627 5.312443 TGCTCCTATGTACTCCTAGGTGATA 59.688 44.000 17.66 4.52 36.64 2.15
4581 5628 4.106502 TGCTCCTATGTACTCCTAGGTGAT 59.893 45.833 17.66 3.56 36.64 3.06
4582 5629 3.462205 TGCTCCTATGTACTCCTAGGTGA 59.538 47.826 17.66 0.00 36.64 4.02
4586 5633 4.038162 GGTGTTGCTCCTATGTACTCCTAG 59.962 50.000 0.00 0.00 0.00 3.02
4587 5634 3.958798 GGTGTTGCTCCTATGTACTCCTA 59.041 47.826 0.00 0.00 0.00 2.94
4588 5635 2.766828 GGTGTTGCTCCTATGTACTCCT 59.233 50.000 0.00 0.00 0.00 3.69
4589 5636 2.766828 AGGTGTTGCTCCTATGTACTCC 59.233 50.000 0.00 0.00 33.04 3.85
4591 5638 3.441101 TGAGGTGTTGCTCCTATGTACT 58.559 45.455 0.00 0.00 35.20 2.73
4592 5639 3.447586 TCTGAGGTGTTGCTCCTATGTAC 59.552 47.826 0.00 0.00 35.20 2.90
4593 5640 3.708451 TCTGAGGTGTTGCTCCTATGTA 58.292 45.455 0.00 0.00 35.20 2.29
4594 5641 2.540383 TCTGAGGTGTTGCTCCTATGT 58.460 47.619 0.00 0.00 35.20 2.29
4595 5642 3.834489 ATCTGAGGTGTTGCTCCTATG 57.166 47.619 0.00 0.00 35.20 2.23
4596 5643 4.018960 ACAAATCTGAGGTGTTGCTCCTAT 60.019 41.667 0.00 0.00 35.20 2.57
4597 5644 3.327757 ACAAATCTGAGGTGTTGCTCCTA 59.672 43.478 0.00 0.00 35.20 2.94
4619 5700 5.758296 GGTGCGAGTCCTTGATAAATTATCA 59.242 40.000 11.32 11.32 43.06 2.15
4620 5701 5.758296 TGGTGCGAGTCCTTGATAAATTATC 59.242 40.000 6.07 6.07 35.74 1.75
4621 5702 5.680619 TGGTGCGAGTCCTTGATAAATTAT 58.319 37.500 0.00 0.00 0.00 1.28
4635 5716 2.961741 AGATCTGATGTATGGTGCGAGT 59.038 45.455 0.00 0.00 0.00 4.18
4662 7633 6.873076 GCTCCCACAATTCAATGTTTCAAATA 59.127 34.615 0.00 0.00 0.00 1.40
4675 7646 1.541588 GTGACAAGGCTCCCACAATTC 59.458 52.381 8.41 0.00 0.00 2.17
4685 7656 2.952310 GTTTTCTCCTTGTGACAAGGCT 59.048 45.455 33.80 0.00 37.34 4.58
4688 7659 3.066760 GGGTGTTTTCTCCTTGTGACAAG 59.933 47.826 18.04 18.04 34.27 3.16
4691 7662 2.932261 AGGGTGTTTTCTCCTTGTGAC 58.068 47.619 0.00 0.00 34.27 3.67
4697 7668 6.560003 AATTTTTGAAGGGTGTTTTCTCCT 57.440 33.333 0.00 0.00 34.27 3.69
4751 7722 9.498176 TTCTTTCGCCTTTTACTAAAGAATACT 57.502 29.630 0.00 0.00 42.78 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.