Multiple sequence alignment - TraesCS3D01G432300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G432300 chr3D 100.000 5103 0 0 1 5103 546200331 546195229 0.000000e+00 9424.0
1 TraesCS3D01G432300 chr3D 84.255 235 37 0 1399 1633 180470745 180470511 3.970000e-56 230.0
2 TraesCS3D01G432300 chr3D 83.333 108 14 4 1220 1325 180471139 180471034 4.210000e-16 97.1
3 TraesCS3D01G432300 chr3A 94.143 1605 66 10 512 2096 682480143 682478547 0.000000e+00 2418.0
4 TraesCS3D01G432300 chr3A 90.719 668 42 10 4456 5103 682418444 682417777 0.000000e+00 872.0
5 TraesCS3D01G432300 chr3A 93.299 582 21 10 3034 3602 682477263 682476687 0.000000e+00 843.0
6 TraesCS3D01G432300 chr3A 93.346 526 28 3 3781 4304 682476674 682476154 0.000000e+00 771.0
7 TraesCS3D01G432300 chr3A 83.830 235 38 0 1399 1633 225894570 225894336 1.850000e-54 224.0
8 TraesCS3D01G432300 chr3A 88.757 169 9 3 4290 4448 682418691 682418523 1.120000e-46 198.0
9 TraesCS3D01G432300 chr3A 87.805 123 5 3 2108 2220 682478562 682478440 8.910000e-28 135.0
10 TraesCS3D01G432300 chr3A 83.333 144 12 10 3628 3768 396018676 396018542 6.940000e-24 122.0
11 TraesCS3D01G432300 chr3A 96.000 50 2 0 1277 1326 225894924 225894875 1.180000e-11 82.4
12 TraesCS3D01G432300 chr3B 94.448 1531 41 12 554 2060 722591765 722590255 0.000000e+00 2316.0
13 TraesCS3D01G432300 chr3B 91.472 727 33 4 3781 4479 722588170 722587445 0.000000e+00 972.0
14 TraesCS3D01G432300 chr3B 95.812 573 18 5 3032 3603 722588746 722588179 0.000000e+00 920.0
15 TraesCS3D01G432300 chr3B 87.067 549 45 10 4579 5103 722493163 722492617 9.460000e-167 597.0
16 TraesCS3D01G432300 chr3B 83.264 239 32 6 1399 1633 258721285 258721051 4.000000e-51 213.0
17 TraesCS3D01G432300 chr3B 82.407 108 15 4 1220 1325 258721665 258721560 1.960000e-14 91.6
18 TraesCS3D01G432300 chr3B 94.737 38 2 0 512 549 722592356 722592319 5.520000e-05 60.2
19 TraesCS3D01G432300 chr3B 100.000 29 0 0 4974 5002 543839365 543839337 3.000000e-03 54.7
20 TraesCS3D01G432300 chr1D 98.039 510 9 1 1 510 331882896 331883404 0.000000e+00 885.0
21 TraesCS3D01G432300 chr1D 96.887 514 9 2 1 514 249758904 249759410 0.000000e+00 854.0
22 TraesCS3D01G432300 chr7A 95.164 517 21 2 1 513 51667359 51666843 0.000000e+00 813.0
23 TraesCS3D01G432300 chr7A 81.176 170 21 5 3609 3775 640450318 640450157 5.360000e-25 126.0
24 TraesCS3D01G432300 chr7D 94.922 512 10 5 1 510 95861536 95862033 0.000000e+00 787.0
25 TraesCS3D01G432300 chr4D 82.857 210 34 2 1401 1609 80836572 80836780 2.430000e-43 187.0
26 TraesCS3D01G432300 chr4D 82.741 197 34 0 1400 1596 28881790 28881986 5.250000e-40 176.0
27 TraesCS3D01G432300 chr4A 83.249 197 33 0 1400 1596 574841478 574841282 1.130000e-41 182.0
28 TraesCS3D01G432300 chr4A 83.333 168 16 7 3610 3773 662136529 662136370 1.480000e-30 145.0
29 TraesCS3D01G432300 chr4A 100.000 30 0 0 4973 5002 258087607 258087578 7.140000e-04 56.5
30 TraesCS3D01G432300 chr4B 81.905 210 36 2 1401 1609 112921626 112921834 5.250000e-40 176.0
31 TraesCS3D01G432300 chr2B 84.524 168 17 2 3609 3773 776611709 776611870 1.900000e-34 158.0
32 TraesCS3D01G432300 chr6A 83.832 167 18 5 3609 3773 306727859 306727700 3.180000e-32 150.0
33 TraesCS3D01G432300 chr2A 78.008 241 51 2 2306 2545 769521639 769521400 3.180000e-32 150.0
34 TraesCS3D01G432300 chr2A 83.333 168 18 4 3609 3773 760756008 760755848 4.120000e-31 147.0
35 TraesCS3D01G432300 chr2A 82.432 74 10 3 4950 5021 744497316 744497244 1.530000e-05 62.1
36 TraesCS3D01G432300 chr1A 83.626 171 14 9 3610 3773 29154423 29154586 1.140000e-31 148.0
37 TraesCS3D01G432300 chr1A 81.988 161 19 5 3610 3767 14232544 14232697 1.490000e-25 128.0
38 TraesCS3D01G432300 chr1A 86.792 53 7 0 4950 5002 484876233 484876285 5.520000e-05 60.2
39 TraesCS3D01G432300 chr6B 84.713 157 13 4 3614 3767 79725374 79725522 4.120000e-31 147.0
40 TraesCS3D01G432300 chr1B 89.247 93 9 1 2342 2434 51611557 51611648 1.160000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G432300 chr3D 546195229 546200331 5102 True 9424.00 9424 100.00000 1 5103 1 chr3D.!!$R1 5102
1 TraesCS3D01G432300 chr3A 682476154 682480143 3989 True 1041.75 2418 92.14825 512 4304 4 chr3A.!!$R4 3792
2 TraesCS3D01G432300 chr3A 682417777 682418691 914 True 535.00 872 89.73800 4290 5103 2 chr3A.!!$R3 813
3 TraesCS3D01G432300 chr3B 722587445 722592356 4911 True 1067.05 2316 94.11725 512 4479 4 chr3B.!!$R4 3967
4 TraesCS3D01G432300 chr3B 722492617 722493163 546 True 597.00 597 87.06700 4579 5103 1 chr3B.!!$R2 524
5 TraesCS3D01G432300 chr1D 331882896 331883404 508 False 885.00 885 98.03900 1 510 1 chr1D.!!$F2 509
6 TraesCS3D01G432300 chr1D 249758904 249759410 506 False 854.00 854 96.88700 1 514 1 chr1D.!!$F1 513
7 TraesCS3D01G432300 chr7A 51666843 51667359 516 True 813.00 813 95.16400 1 513 1 chr7A.!!$R1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 1365 0.101399 CTCTAGCACCGTGTAGGCAG 59.899 60.0 0.00 0.00 46.52 4.85 F
1257 1830 0.101399 AGGACATGAAGCTACGCGAG 59.899 55.0 15.93 7.21 0.00 5.03 F
2752 4152 0.035152 ATCTCAAGGCACATTCCGCA 60.035 50.0 0.00 0.00 0.00 5.69 F
3369 5053 0.028770 CTCAGTCGATCGCTCACCTC 59.971 60.0 11.09 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 2466 0.038021 TGGTGGTGGTGGTGATGATG 59.962 55.0 0.0 0.0 0.00 3.07 R
2814 4214 0.178990 GAGGGAGGTTGTGCCAAGTT 60.179 55.0 0.0 0.0 39.84 2.66 R
4024 5710 0.322975 AGTGAACGCCAGCTTGATCT 59.677 50.0 0.0 0.0 0.00 2.75 R
4327 6044 0.737715 GGCTACCGTCAACTGCTGAG 60.738 60.0 0.0 0.0 33.60 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
390 394 3.830755 GCTAACGAGGGATTAGGTGGATA 59.169 47.826 0.00 0.00 31.44 2.59
397 401 3.116862 AGGGATTAGGTGGATAGTTCGGA 60.117 47.826 0.00 0.00 0.00 4.55
482 487 1.470051 TCGGATCGATCACCTCACAA 58.530 50.000 25.93 0.19 0.00 3.33
510 515 1.947597 TTCGGGTGTTATCGGGGTCG 61.948 60.000 0.00 0.00 37.82 4.79
624 1179 2.464403 GCCCCACCTCCATAGCCAT 61.464 63.158 0.00 0.00 0.00 4.40
807 1363 1.227002 GCTCTAGCACCGTGTAGGC 60.227 63.158 0.00 3.99 46.52 3.93
808 1364 1.945354 GCTCTAGCACCGTGTAGGCA 61.945 60.000 0.00 0.00 46.52 4.75
809 1365 0.101399 CTCTAGCACCGTGTAGGCAG 59.899 60.000 0.00 0.00 46.52 4.85
810 1366 1.141881 CTAGCACCGTGTAGGCAGG 59.858 63.158 0.00 0.00 46.52 4.85
930 1499 0.969409 ACCGCCTACCCACTGACTAC 60.969 60.000 0.00 0.00 0.00 2.73
986 1559 3.760684 AGGTAGTTCAATTAGGTCGACGT 59.239 43.478 15.89 15.89 0.00 4.34
991 1564 3.646611 TCAATTAGGTCGACGTTGACA 57.353 42.857 31.70 16.04 40.72 3.58
1110 1683 2.591715 GTTGCCGTGCTCACCACT 60.592 61.111 0.00 0.00 42.42 4.00
1257 1830 0.101399 AGGACATGAAGCTACGCGAG 59.899 55.000 15.93 7.21 0.00 5.03
1334 1907 2.496470 GGAGATCCGGTATGTATGTCCC 59.504 54.545 0.00 0.00 29.08 4.46
1335 1908 2.163815 GAGATCCGGTATGTATGTCCCG 59.836 54.545 0.00 0.00 40.12 5.14
1381 1960 7.329588 TGTACATGACACTATGACGTCTAAT 57.670 36.000 17.92 5.32 31.20 1.73
1472 2051 4.409218 CGCCCGTTCTCCGACGAA 62.409 66.667 0.00 0.00 45.47 3.85
1483 2062 0.327259 TCCGACGAAGAGGAGGAGAA 59.673 55.000 0.00 0.00 33.74 2.87
1489 2068 1.134175 CGAAGAGGAGGAGAAGCTGAC 59.866 57.143 0.00 0.00 0.00 3.51
1734 2313 1.531748 CACCACAACCACCTCCTGT 59.468 57.895 0.00 0.00 0.00 4.00
1736 2315 0.106719 ACCACAACCACCTCCTGTTG 60.107 55.000 0.00 0.00 45.65 3.33
1883 2462 7.093727 CCCGGTGAGTAACTTATCTATCATCAT 60.094 40.741 0.00 0.00 0.00 2.45
1884 2463 7.971168 CCGGTGAGTAACTTATCTATCATCATC 59.029 40.741 0.00 0.00 0.00 2.92
1885 2464 8.515414 CGGTGAGTAACTTATCTATCATCATCA 58.485 37.037 0.00 0.00 0.00 3.07
1981 2562 1.372683 CACTGACTGGTGGTCCCTG 59.627 63.158 0.00 0.00 43.89 4.45
2014 2595 5.446143 AGCTGATTATTCTAGACGACTGG 57.554 43.478 0.00 0.00 0.00 4.00
2223 2988 7.283807 CACCCCTTTAGTACCCACATTTTATAC 59.716 40.741 0.00 0.00 0.00 1.47
2232 2997 4.281182 ACCCACATTTTATACGGCAAACAA 59.719 37.500 0.00 0.00 0.00 2.83
2233 2998 5.221461 ACCCACATTTTATACGGCAAACAAA 60.221 36.000 0.00 0.00 0.00 2.83
2271 3037 4.533919 CCATTAAGATTGGGCAAACACA 57.466 40.909 0.00 0.00 0.00 3.72
2277 3043 4.261578 AGATTGGGCAAACACATTTCAG 57.738 40.909 0.00 0.00 0.00 3.02
2320 3086 7.808381 CGATAACAGATCGGTAATGTTACTCAT 59.192 37.037 7.84 0.00 40.95 2.90
2322 3088 5.844004 ACAGATCGGTAATGTTACTCATCC 58.156 41.667 0.00 0.00 35.48 3.51
2326 3092 3.040795 CGGTAATGTTACTCATCCGACG 58.959 50.000 0.00 0.00 42.68 5.12
2330 3096 5.005107 GGTAATGTTACTCATCCGACGTTTC 59.995 44.000 0.00 0.00 35.48 2.78
2333 3099 3.177487 GTTACTCATCCGACGTTTCCTC 58.823 50.000 0.00 0.00 0.00 3.71
2350 3116 4.785453 CGGAGAGGGGTGGCAAGC 62.785 72.222 0.00 0.00 0.00 4.01
2354 3120 2.044946 GAGGGGTGGCAAGCGAAT 60.045 61.111 0.00 0.00 0.00 3.34
2373 3155 5.400485 GCGAATGCCATTTGATGATAGTTTC 59.600 40.000 8.90 0.00 33.98 2.78
2379 3161 6.433716 TGCCATTTGATGATAGTTTCAGTTGA 59.566 34.615 0.00 0.00 37.89 3.18
2387 3169 9.559732 TGATGATAGTTTCAGTTGAGAAGAAAA 57.440 29.630 0.00 0.00 37.89 2.29
2395 3177 7.969387 TTCAGTTGAGAAGAAAAATCAAACG 57.031 32.000 0.00 0.00 34.91 3.60
2396 3178 7.315247 TCAGTTGAGAAGAAAAATCAAACGA 57.685 32.000 0.00 0.00 34.91 3.85
2398 3180 6.966632 CAGTTGAGAAGAAAAATCAAACGACA 59.033 34.615 0.00 0.00 34.91 4.35
2412 3194 8.522178 AATCAAACGACAACAGTTTTAAAACA 57.478 26.923 28.03 7.44 39.50 2.83
2446 3228 7.551974 CCTTCTCTAAAGAACATGTCATGTCAT 59.448 37.037 18.66 7.86 44.07 3.06
2448 3230 8.484641 TCTCTAAAGAACATGTCATGTCATTC 57.515 34.615 18.66 12.59 44.07 2.67
2450 3232 8.260270 TCTAAAGAACATGTCATGTCATTCTG 57.740 34.615 18.66 11.76 44.07 3.02
2457 3239 9.282247 GAACATGTCATGTCATTCTGAATAAAC 57.718 33.333 18.66 5.51 44.07 2.01
2458 3240 7.466805 ACATGTCATGTCATTCTGAATAAACG 58.533 34.615 12.87 0.00 39.92 3.60
2481 3265 3.430098 GCCATCCCGCACAATAAAAATGA 60.430 43.478 0.00 0.00 0.00 2.57
2499 3283 4.584029 ATGACATCTAAAACGTTCGCAG 57.416 40.909 0.00 0.00 0.00 5.18
2507 3291 0.884704 AAACGTTCGCAGATGCCACT 60.885 50.000 0.00 0.00 37.91 4.00
2517 3301 1.277273 CAGATGCCACTCTTCCTGACA 59.723 52.381 0.00 0.00 0.00 3.58
2540 3332 1.076332 GTTCGCCAGTTATGAGCGTT 58.924 50.000 3.39 0.00 42.78 4.84
2546 3338 2.608090 GCCAGTTATGAGCGTTCTAACC 59.392 50.000 13.70 1.98 0.00 2.85
2554 3346 2.028839 TGAGCGTTCTAACCGAATTGGA 60.029 45.455 0.00 0.00 42.00 3.53
2558 3350 4.569564 AGCGTTCTAACCGAATTGGATAAC 59.430 41.667 0.00 0.00 42.00 1.89
2566 3358 5.576563 ACCGAATTGGATAACCCATCATA 57.423 39.130 0.00 0.00 46.10 2.15
2581 3375 4.949238 CCCATCATACCACAACATCTTTCA 59.051 41.667 0.00 0.00 0.00 2.69
2586 3380 1.946768 ACCACAACATCTTTCACCACG 59.053 47.619 0.00 0.00 0.00 4.94
2635 3429 1.910580 AATCGACCATGTTCCCGCCT 61.911 55.000 0.00 0.00 0.00 5.52
2690 3490 4.410225 CCAGTGCTCATGGCTGTT 57.590 55.556 7.54 0.00 42.39 3.16
2718 4118 0.320683 GCCCAACCACTGCCAATTTC 60.321 55.000 0.00 0.00 0.00 2.17
2738 4138 0.689080 GAGCCTCCTCCCACATCTCA 60.689 60.000 0.00 0.00 31.68 3.27
2752 4152 0.035152 ATCTCAAGGCACATTCCGCA 60.035 50.000 0.00 0.00 0.00 5.69
2791 4191 2.328099 GCCAAACCACAGCCTCGAG 61.328 63.158 5.13 5.13 0.00 4.04
2803 4203 2.470286 CTCGAGCGTTGCCGAAAC 59.530 61.111 0.00 0.00 32.89 2.78
2805 4205 0.731514 CTCGAGCGTTGCCGAAACTA 60.732 55.000 0.00 0.00 36.56 2.24
2813 4213 2.739913 CGTTGCCGAAACTAGGAATTCA 59.260 45.455 7.93 0.00 36.56 2.57
2814 4214 3.187637 CGTTGCCGAAACTAGGAATTCAA 59.812 43.478 7.93 0.00 36.56 2.69
2815 4215 4.319911 CGTTGCCGAAACTAGGAATTCAAA 60.320 41.667 7.93 0.00 36.56 2.69
2816 4216 4.759516 TGCCGAAACTAGGAATTCAAAC 57.240 40.909 7.93 0.00 0.00 2.93
2817 4217 4.394729 TGCCGAAACTAGGAATTCAAACT 58.605 39.130 7.93 0.00 0.00 2.66
2818 4218 4.825085 TGCCGAAACTAGGAATTCAAACTT 59.175 37.500 7.93 0.00 0.00 2.66
2819 4219 5.154222 GCCGAAACTAGGAATTCAAACTTG 58.846 41.667 7.93 0.00 0.00 3.16
2820 4220 5.699839 CCGAAACTAGGAATTCAAACTTGG 58.300 41.667 7.93 0.00 0.00 3.61
2821 4221 5.154222 CGAAACTAGGAATTCAAACTTGGC 58.846 41.667 7.93 0.00 0.00 4.52
2822 4222 5.278266 CGAAACTAGGAATTCAAACTTGGCA 60.278 40.000 7.93 0.00 0.00 4.92
2823 4223 5.453567 AACTAGGAATTCAAACTTGGCAC 57.546 39.130 7.93 0.00 0.00 5.01
2824 4224 4.469657 ACTAGGAATTCAAACTTGGCACA 58.530 39.130 7.93 0.00 0.00 4.57
2835 4235 3.256960 TGGCACAACCTCCCTCCC 61.257 66.667 0.00 0.00 40.22 4.30
2836 4236 3.256960 GGCACAACCTCCCTCCCA 61.257 66.667 0.00 0.00 34.51 4.37
2837 4237 2.616458 GGCACAACCTCCCTCCCAT 61.616 63.158 0.00 0.00 34.51 4.00
2838 4238 1.077429 GCACAACCTCCCTCCCATC 60.077 63.158 0.00 0.00 0.00 3.51
2839 4239 1.609783 CACAACCTCCCTCCCATCC 59.390 63.158 0.00 0.00 0.00 3.51
2840 4240 1.995626 ACAACCTCCCTCCCATCCG 60.996 63.158 0.00 0.00 0.00 4.18
2841 4241 2.366972 AACCTCCCTCCCATCCGG 60.367 66.667 0.00 0.00 0.00 5.14
2843 4243 4.888325 CCTCCCTCCCATCCGGCT 62.888 72.222 0.00 0.00 0.00 5.52
2844 4244 2.201490 CTCCCTCCCATCCGGCTA 59.799 66.667 0.00 0.00 0.00 3.93
2845 4245 2.122989 TCCCTCCCATCCGGCTAC 60.123 66.667 0.00 0.00 0.00 3.58
2846 4246 3.242291 CCCTCCCATCCGGCTACC 61.242 72.222 0.00 0.00 0.00 3.18
2847 4247 2.445845 CCTCCCATCCGGCTACCA 60.446 66.667 0.00 0.00 0.00 3.25
2848 4248 2.808206 CCTCCCATCCGGCTACCAC 61.808 68.421 0.00 0.00 0.00 4.16
2849 4249 3.151710 TCCCATCCGGCTACCACG 61.152 66.667 0.00 0.00 0.00 4.94
2850 4250 3.151710 CCCATCCGGCTACCACGA 61.152 66.667 0.00 0.00 0.00 4.35
2851 4251 2.106332 CCATCCGGCTACCACGAC 59.894 66.667 0.00 0.00 0.00 4.34
2852 4252 2.278596 CATCCGGCTACCACGACG 60.279 66.667 0.00 0.00 0.00 5.12
2853 4253 2.438975 ATCCGGCTACCACGACGA 60.439 61.111 0.00 0.00 0.00 4.20
2854 4254 2.768492 ATCCGGCTACCACGACGAC 61.768 63.158 0.00 0.00 0.00 4.34
2855 4255 4.824166 CCGGCTACCACGACGACG 62.824 72.222 5.58 5.58 45.75 5.12
2865 4265 2.098871 CGACGACGTATGTGGCGA 59.901 61.111 0.00 0.00 34.56 5.54
2866 4266 2.212983 CGACGACGTATGTGGCGAC 61.213 63.158 0.00 0.00 34.56 5.19
2867 4267 1.870901 GACGACGTATGTGGCGACC 60.871 63.158 0.00 0.00 0.00 4.79
2868 4268 2.262471 GACGACGTATGTGGCGACCT 62.262 60.000 0.00 0.00 0.00 3.85
2869 4269 1.585521 CGACGTATGTGGCGACCTC 60.586 63.158 0.00 0.00 0.00 3.85
2870 4270 1.226888 GACGTATGTGGCGACCTCC 60.227 63.158 0.00 0.00 0.00 4.30
2871 4271 1.664321 GACGTATGTGGCGACCTCCT 61.664 60.000 0.00 0.00 0.00 3.69
2891 4439 1.754621 CCGGCCTCTGCACTCTCTA 60.755 63.158 0.00 0.00 40.13 2.43
2892 4440 1.435515 CGGCCTCTGCACTCTCTAC 59.564 63.158 0.00 0.00 40.13 2.59
2894 4442 1.435515 GCCTCTGCACTCTCTACCG 59.564 63.158 0.00 0.00 37.47 4.02
2897 4445 1.546476 CCTCTGCACTCTCTACCGTTT 59.454 52.381 0.00 0.00 0.00 3.60
2898 4446 2.753452 CCTCTGCACTCTCTACCGTTTA 59.247 50.000 0.00 0.00 0.00 2.01
2899 4447 3.427773 CCTCTGCACTCTCTACCGTTTAC 60.428 52.174 0.00 0.00 0.00 2.01
2915 4465 5.107375 ACCGTTTACACACAATATGTTCGAC 60.107 40.000 0.00 0.00 40.64 4.20
2935 4485 4.623167 CGACGGAATGAGATATCCACATTC 59.377 45.833 27.29 27.29 44.91 2.67
2979 4589 9.423061 AGTGAAAATATAGCAAACATGGTTTTC 57.577 29.630 0.00 0.00 35.81 2.29
3003 4674 5.180492 CCTTACATACAAAAGAGGTGCGAAA 59.820 40.000 0.00 0.00 0.00 3.46
3018 4689 6.669278 AGGTGCGAAATAGAAGAAGAAAAAC 58.331 36.000 0.00 0.00 0.00 2.43
3019 4690 5.856986 GGTGCGAAATAGAAGAAGAAAAACC 59.143 40.000 0.00 0.00 0.00 3.27
3020 4691 6.294010 GGTGCGAAATAGAAGAAGAAAAACCT 60.294 38.462 0.00 0.00 0.00 3.50
3021 4692 6.578919 GTGCGAAATAGAAGAAGAAAAACCTG 59.421 38.462 0.00 0.00 0.00 4.00
3022 4693 6.086871 GCGAAATAGAAGAAGAAAAACCTGG 58.913 40.000 0.00 0.00 0.00 4.45
3023 4694 6.072673 GCGAAATAGAAGAAGAAAAACCTGGA 60.073 38.462 0.00 0.00 0.00 3.86
3024 4695 7.362142 GCGAAATAGAAGAAGAAAAACCTGGAT 60.362 37.037 0.00 0.00 0.00 3.41
3025 4696 8.515414 CGAAATAGAAGAAGAAAAACCTGGATT 58.485 33.333 0.00 0.00 0.00 3.01
3028 4699 8.809468 ATAGAAGAAGAAAAACCTGGATTACC 57.191 34.615 0.00 0.00 0.00 2.85
3029 4700 6.010850 AGAAGAAGAAAAACCTGGATTACCC 58.989 40.000 0.00 0.00 34.81 3.69
3030 4701 5.600669 AGAAGAAAAACCTGGATTACCCT 57.399 39.130 0.00 0.00 35.38 4.34
3031 4702 6.713731 AGAAGAAAAACCTGGATTACCCTA 57.286 37.500 0.00 0.00 35.38 3.53
3032 4703 7.098845 AGAAGAAAAACCTGGATTACCCTAA 57.901 36.000 0.00 0.00 35.38 2.69
3033 4704 7.175797 AGAAGAAAAACCTGGATTACCCTAAG 58.824 38.462 0.00 0.00 35.38 2.18
3034 4705 6.713731 AGAAAAACCTGGATTACCCTAAGA 57.286 37.500 0.00 0.00 35.38 2.10
3035 4706 7.098845 AGAAAAACCTGGATTACCCTAAGAA 57.901 36.000 0.00 0.00 35.38 2.52
3036 4707 7.532199 AGAAAAACCTGGATTACCCTAAGAAA 58.468 34.615 0.00 0.00 35.38 2.52
3037 4708 8.008332 AGAAAAACCTGGATTACCCTAAGAAAA 58.992 33.333 0.00 0.00 35.38 2.29
3038 4709 7.534723 AAAACCTGGATTACCCTAAGAAAAC 57.465 36.000 0.00 0.00 35.38 2.43
3047 4718 6.956102 TTACCCTAAGAAAACACCTGGATA 57.044 37.500 0.00 0.00 0.00 2.59
3048 4719 5.437191 ACCCTAAGAAAACACCTGGATAG 57.563 43.478 0.00 0.00 0.00 2.08
3186 4862 2.674084 CGGCCTTTTCGTCGGTTCC 61.674 63.158 0.00 0.00 0.00 3.62
3187 4863 2.330372 GGCCTTTTCGTCGGTTCCC 61.330 63.158 0.00 0.00 0.00 3.97
3226 4902 1.597937 GCCGAAATAAATGCCTCGCTG 60.598 52.381 0.00 0.00 0.00 5.18
3368 5052 1.999071 GCTCAGTCGATCGCTCACCT 61.999 60.000 11.09 0.00 0.00 4.00
3369 5053 0.028770 CTCAGTCGATCGCTCACCTC 59.971 60.000 11.09 0.00 0.00 3.85
3371 5055 2.122167 AGTCGATCGCTCACCTCCC 61.122 63.158 11.09 0.00 0.00 4.30
3372 5056 2.122167 GTCGATCGCTCACCTCCCT 61.122 63.158 11.09 0.00 0.00 4.20
3373 5057 1.824329 TCGATCGCTCACCTCCCTC 60.824 63.158 11.09 0.00 0.00 4.30
3374 5058 2.121538 CGATCGCTCACCTCCCTCA 61.122 63.158 0.26 0.00 0.00 3.86
3375 5059 1.439644 GATCGCTCACCTCCCTCAC 59.560 63.158 0.00 0.00 0.00 3.51
3376 5060 1.305297 ATCGCTCACCTCCCTCACA 60.305 57.895 0.00 0.00 0.00 3.58
3378 5062 2.985456 GCTCACCTCCCTCACAGG 59.015 66.667 0.00 0.00 37.03 4.00
3516 5200 1.668826 TAAATGGCCCTCTCACCTGT 58.331 50.000 0.00 0.00 0.00 4.00
3564 5248 2.816672 CCTTGAGCTGTTCCCTTTTCTC 59.183 50.000 0.00 0.00 0.00 2.87
3606 5290 2.989166 CGGAGTTTTTACCGTGTCTACC 59.011 50.000 0.00 0.00 43.53 3.18
3607 5291 3.552684 CGGAGTTTTTACCGTGTCTACCA 60.553 47.826 0.00 0.00 43.53 3.25
3608 5292 3.992427 GGAGTTTTTACCGTGTCTACCAG 59.008 47.826 0.00 0.00 0.00 4.00
3610 5294 5.278957 GGAGTTTTTACCGTGTCTACCAGTA 60.279 44.000 0.00 0.00 0.00 2.74
3611 5295 5.532557 AGTTTTTACCGTGTCTACCAGTAC 58.467 41.667 0.00 0.00 0.00 2.73
3612 5296 5.302823 AGTTTTTACCGTGTCTACCAGTACT 59.697 40.000 0.00 0.00 0.00 2.73
3614 5298 1.831580 ACCGTGTCTACCAGTACTCC 58.168 55.000 0.00 0.00 0.00 3.85
3615 5299 1.353694 ACCGTGTCTACCAGTACTCCT 59.646 52.381 0.00 0.00 0.00 3.69
3616 5300 2.224967 ACCGTGTCTACCAGTACTCCTT 60.225 50.000 0.00 0.00 0.00 3.36
3617 5301 2.422832 CCGTGTCTACCAGTACTCCTTC 59.577 54.545 0.00 0.00 0.00 3.46
3618 5302 2.422832 CGTGTCTACCAGTACTCCTTCC 59.577 54.545 0.00 0.00 0.00 3.46
3619 5303 2.422832 GTGTCTACCAGTACTCCTTCCG 59.577 54.545 0.00 0.00 0.00 4.30
3620 5304 2.040813 TGTCTACCAGTACTCCTTCCGT 59.959 50.000 0.00 0.00 0.00 4.69
3621 5305 3.087781 GTCTACCAGTACTCCTTCCGTT 58.912 50.000 0.00 0.00 0.00 4.44
3622 5306 3.128415 GTCTACCAGTACTCCTTCCGTTC 59.872 52.174 0.00 0.00 0.00 3.95
3623 5307 1.264295 ACCAGTACTCCTTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
3624 5308 1.203149 ACCAGTACTCCTTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
3625 5309 2.042162 ACCAGTACTCCTTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
3626 5310 3.094572 CCAGTACTCCTTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
3627 5311 3.512724 CCAGTACTCCTTCCGTTCCTAAA 59.487 47.826 0.00 0.00 0.00 1.85
3628 5312 4.161754 CCAGTACTCCTTCCGTTCCTAAAT 59.838 45.833 0.00 0.00 0.00 1.40
3629 5313 5.361857 CCAGTACTCCTTCCGTTCCTAAATA 59.638 44.000 0.00 0.00 0.00 1.40
3630 5314 6.041751 CCAGTACTCCTTCCGTTCCTAAATAT 59.958 42.308 0.00 0.00 0.00 1.28
3631 5315 7.418712 CCAGTACTCCTTCCGTTCCTAAATATT 60.419 40.741 0.00 0.00 0.00 1.28
3632 5316 7.985752 CAGTACTCCTTCCGTTCCTAAATATTT 59.014 37.037 5.89 5.89 0.00 1.40
3633 5317 7.985752 AGTACTCCTTCCGTTCCTAAATATTTG 59.014 37.037 11.05 1.40 0.00 2.32
3634 5318 6.718294 ACTCCTTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
3635 5319 7.173032 ACTCCTTCCGTTCCTAAATATTTGTT 58.827 34.615 11.05 0.00 0.00 2.83
3636 5320 7.668469 ACTCCTTCCGTTCCTAAATATTTGTTT 59.332 33.333 11.05 0.00 0.00 2.83
3637 5321 8.411991 TCCTTCCGTTCCTAAATATTTGTTTT 57.588 30.769 11.05 0.00 0.00 2.43
3638 5322 8.862085 TCCTTCCGTTCCTAAATATTTGTTTTT 58.138 29.630 11.05 0.00 0.00 1.94
3707 5391 9.080097 ACTCCTATTTTAGAGCGTATATTCACT 57.920 33.333 0.00 0.00 0.00 3.41
3708 5392 9.562583 CTCCTATTTTAGAGCGTATATTCACTC 57.437 37.037 0.00 0.00 0.00 3.51
3709 5393 8.235226 TCCTATTTTAGAGCGTATATTCACTCG 58.765 37.037 0.00 0.00 34.31 4.18
3710 5394 8.021973 CCTATTTTAGAGCGTATATTCACTCGT 58.978 37.037 0.00 0.00 34.31 4.18
3711 5395 9.395707 CTATTTTAGAGCGTATATTCACTCGTT 57.604 33.333 0.00 0.00 34.31 3.85
3712 5396 8.644318 ATTTTAGAGCGTATATTCACTCGTTT 57.356 30.769 0.00 0.00 34.31 3.60
3713 5397 8.470040 TTTTAGAGCGTATATTCACTCGTTTT 57.530 30.769 0.00 0.00 34.31 2.43
3714 5398 5.950965 AGAGCGTATATTCACTCGTTTTG 57.049 39.130 0.00 0.00 34.31 2.44
3715 5399 4.267928 AGAGCGTATATTCACTCGTTTTGC 59.732 41.667 0.00 0.00 34.31 3.68
3716 5400 4.181578 AGCGTATATTCACTCGTTTTGCT 58.818 39.130 0.00 0.00 0.00 3.91
3717 5401 4.630069 AGCGTATATTCACTCGTTTTGCTT 59.370 37.500 0.00 0.00 0.00 3.91
3718 5402 4.956184 GCGTATATTCACTCGTTTTGCTTC 59.044 41.667 0.00 0.00 0.00 3.86
3719 5403 5.181084 CGTATATTCACTCGTTTTGCTTCG 58.819 41.667 0.00 0.00 0.00 3.79
3720 5404 5.220154 CGTATATTCACTCGTTTTGCTTCGT 60.220 40.000 0.00 0.00 0.00 3.85
3721 5405 6.021232 CGTATATTCACTCGTTTTGCTTCGTA 60.021 38.462 0.00 0.00 0.00 3.43
3722 5406 6.903883 ATATTCACTCGTTTTGCTTCGTAT 57.096 33.333 0.00 0.00 0.00 3.06
3723 5407 4.383774 TTCACTCGTTTTGCTTCGTATG 57.616 40.909 0.00 0.00 0.00 2.39
3724 5408 3.386486 TCACTCGTTTTGCTTCGTATGT 58.614 40.909 0.00 0.00 0.00 2.29
3725 5409 4.548494 TCACTCGTTTTGCTTCGTATGTA 58.452 39.130 0.00 0.00 0.00 2.29
3726 5410 4.619760 TCACTCGTTTTGCTTCGTATGTAG 59.380 41.667 0.00 0.00 0.00 2.74
3727 5411 4.384846 CACTCGTTTTGCTTCGTATGTAGT 59.615 41.667 0.00 0.00 0.00 2.73
3728 5412 4.986659 ACTCGTTTTGCTTCGTATGTAGTT 59.013 37.500 0.00 0.00 0.00 2.24
3729 5413 6.088483 CACTCGTTTTGCTTCGTATGTAGTTA 59.912 38.462 0.00 0.00 0.00 2.24
3730 5414 6.088616 ACTCGTTTTGCTTCGTATGTAGTTAC 59.911 38.462 0.00 0.00 0.00 2.50
3731 5415 6.151691 TCGTTTTGCTTCGTATGTAGTTACT 58.848 36.000 0.00 0.00 0.00 2.24
3732 5416 6.642131 TCGTTTTGCTTCGTATGTAGTTACTT 59.358 34.615 0.00 0.00 0.00 2.24
3733 5417 6.730619 CGTTTTGCTTCGTATGTAGTTACTTG 59.269 38.462 0.00 0.00 0.00 3.16
3734 5418 7.568134 CGTTTTGCTTCGTATGTAGTTACTTGT 60.568 37.037 0.00 0.00 0.00 3.16
3735 5419 7.718272 TTTGCTTCGTATGTAGTTACTTGTT 57.282 32.000 0.00 0.00 0.00 2.83
3736 5420 6.699895 TGCTTCGTATGTAGTTACTTGTTG 57.300 37.500 0.00 0.00 0.00 3.33
3737 5421 6.448852 TGCTTCGTATGTAGTTACTTGTTGA 58.551 36.000 0.00 0.00 0.00 3.18
3738 5422 6.924612 TGCTTCGTATGTAGTTACTTGTTGAA 59.075 34.615 0.00 0.00 0.00 2.69
3739 5423 7.438757 TGCTTCGTATGTAGTTACTTGTTGAAA 59.561 33.333 0.00 0.00 0.00 2.69
3740 5424 8.440833 GCTTCGTATGTAGTTACTTGTTGAAAT 58.559 33.333 0.00 0.00 0.00 2.17
3776 5460 9.802039 AAACAAATATTTAGGAACAGAGGTACA 57.198 29.630 0.00 0.00 0.00 2.90
3777 5461 9.975218 AACAAATATTTAGGAACAGAGGTACAT 57.025 29.630 0.00 0.00 0.00 2.29
3778 5462 9.396022 ACAAATATTTAGGAACAGAGGTACATG 57.604 33.333 0.00 0.00 0.00 3.21
3779 5463 8.840321 CAAATATTTAGGAACAGAGGTACATGG 58.160 37.037 0.00 0.00 0.00 3.66
3911 5597 4.785453 CAGGAGGTGGCGGCCTTC 62.785 72.222 21.46 14.38 39.34 3.46
3982 5668 1.810030 GATGGCACGGTTCGACTCC 60.810 63.158 0.00 0.00 0.00 3.85
3998 5684 0.745845 CTCCGACCAGGCAAATGGAG 60.746 60.000 8.67 2.22 43.57 3.86
4024 5710 3.578272 GCCGTGTTTGCCGTGACA 61.578 61.111 0.00 0.00 0.00 3.58
4027 5713 1.227999 CCGTGTTTGCCGTGACAGAT 61.228 55.000 0.00 0.00 0.00 2.90
4052 5738 4.072088 GCGTTCACTTGGACGGCG 62.072 66.667 11.93 4.80 0.00 6.46
4176 5888 2.035632 GCAGGTGGATCACTAGCTAGT 58.964 52.381 20.95 20.95 33.82 2.57
4185 5897 4.457949 GGATCACTAGCTAGTTCTAGCCTC 59.542 50.000 23.94 11.69 43.81 4.70
4186 5898 4.781775 TCACTAGCTAGTTCTAGCCTCT 57.218 45.455 23.94 11.27 43.81 3.69
4187 5899 5.890752 TCACTAGCTAGTTCTAGCCTCTA 57.109 43.478 23.94 11.71 43.81 2.43
4188 5900 5.860611 TCACTAGCTAGTTCTAGCCTCTAG 58.139 45.833 23.94 19.77 43.81 2.43
4189 5901 5.603395 TCACTAGCTAGTTCTAGCCTCTAGA 59.397 44.000 23.94 10.43 43.81 2.43
4198 5915 7.253905 AGTTCTAGCCTCTAGACTAGATAGG 57.746 44.000 16.71 12.11 43.25 2.57
4327 6044 1.576356 GGAGGTCGATGTCAGCAATC 58.424 55.000 0.00 0.00 0.00 2.67
4411 6137 2.393271 AAGATTGTTGAGCCGAGGAG 57.607 50.000 0.00 0.00 0.00 3.69
4431 6157 5.608437 AGGAGCATAGATCAGGTTATTTGGA 59.392 40.000 0.00 0.00 0.00 3.53
4442 6168 5.063880 CAGGTTATTTGGATACCCTAGCAC 58.936 45.833 0.00 0.00 29.57 4.40
4448 6174 8.591072 GTTATTTGGATACCCTAGCACATACTA 58.409 37.037 0.00 0.00 0.00 1.82
4568 6367 1.419381 TGTTGACTGGACTAGCCACA 58.581 50.000 2.19 0.00 43.33 4.17
4573 6372 0.036010 ACTGGACTAGCCACATGTGC 60.036 55.000 20.81 15.25 43.33 4.57
4583 6382 3.085533 AGCCACATGTGCGGTTTTTATA 58.914 40.909 20.81 0.00 0.00 0.98
4622 6421 4.412207 GCCTGGTATTTCTTTTTGTAGCG 58.588 43.478 0.00 0.00 0.00 4.26
4628 6427 7.302524 TGGTATTTCTTTTTGTAGCGCTAAAG 58.697 34.615 20.73 20.11 0.00 1.85
4673 6472 6.072119 ACGGATTTGACCTCATTTTAGTTTCC 60.072 38.462 0.00 0.00 0.00 3.13
4869 6689 5.341872 CCACTGGGCATAATTTTTCATCA 57.658 39.130 0.00 0.00 0.00 3.07
4902 6722 0.767375 TGGCAGATCCCTTGATAGGC 59.233 55.000 0.00 0.00 40.50 3.93
4954 6774 4.390264 GAAACAAGAGGCAAGAGTTACCT 58.610 43.478 0.00 0.00 36.19 3.08
4986 6806 0.183014 TTGCGGTGGAGGTAAAACCA 59.817 50.000 0.00 0.00 41.95 3.67
4989 6809 2.240160 TGCGGTGGAGGTAAAACCATAT 59.760 45.455 0.00 0.00 41.95 1.78
5056 6877 2.227865 GTCATCTCGAGGATCAGTAGGC 59.772 54.545 13.56 0.00 33.17 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
390 394 2.494059 CATGTTCCAACAGTCCGAACT 58.506 47.619 11.91 0.00 43.04 3.01
397 401 0.667993 CGTTGCCATGTTCCAACAGT 59.332 50.000 16.38 0.00 43.04 3.55
807 1363 4.664150 TGCTTTTCTTAACCCAAACCTG 57.336 40.909 0.00 0.00 0.00 4.00
808 1364 4.442893 GCTTGCTTTTCTTAACCCAAACCT 60.443 41.667 0.00 0.00 0.00 3.50
809 1365 3.807622 GCTTGCTTTTCTTAACCCAAACC 59.192 43.478 0.00 0.00 0.00 3.27
810 1366 4.507756 CAGCTTGCTTTTCTTAACCCAAAC 59.492 41.667 0.00 0.00 0.00 2.93
930 1499 2.890474 CCAATCGAACGAGCGGGG 60.890 66.667 2.94 0.00 0.00 5.73
986 1559 1.971167 GGCATCCCAACGCTGTCAA 60.971 57.895 0.00 0.00 0.00 3.18
991 1564 2.190578 GCTAGGCATCCCAACGCT 59.809 61.111 0.00 0.00 0.00 5.07
1047 1620 3.723348 GCCTGGTCGTCGTTTGCC 61.723 66.667 0.00 0.00 0.00 4.52
1094 1667 2.591429 CAGTGGTGAGCACGGCAA 60.591 61.111 9.30 0.00 0.00 4.52
1110 1683 0.973496 TGTCTATAGTGGGCGTGCCA 60.973 55.000 13.76 0.00 37.98 4.92
1117 1690 2.824341 GGTATCCCGTGTCTATAGTGGG 59.176 54.545 12.84 12.84 41.43 4.61
1176 1749 1.661498 CGCTACTGCTGCTCTCCTGA 61.661 60.000 0.00 0.00 36.97 3.86
1257 1830 2.659897 CCATAGAGCGCCACGAGC 60.660 66.667 2.29 0.00 38.52 5.03
1392 1971 2.028130 ACAGCTCTTCCCTGTATCTCG 58.972 52.381 0.00 0.00 41.47 4.04
1436 2015 3.664025 CTTGCTGATCCGCGGGTCA 62.664 63.158 37.11 37.11 0.00 4.02
1472 2051 0.682855 CCGTCAGCTTCTCCTCCTCT 60.683 60.000 0.00 0.00 0.00 3.69
1699 2278 2.732094 GGTGACCAACGACGTCGG 60.732 66.667 37.89 24.24 44.95 4.79
1883 2462 1.914798 TGGTGGTGGTGATGATGATGA 59.085 47.619 0.00 0.00 0.00 2.92
1884 2463 2.019249 GTGGTGGTGGTGATGATGATG 58.981 52.381 0.00 0.00 0.00 3.07
1885 2464 1.064463 GGTGGTGGTGGTGATGATGAT 60.064 52.381 0.00 0.00 0.00 2.45
1886 2465 0.327924 GGTGGTGGTGGTGATGATGA 59.672 55.000 0.00 0.00 0.00 2.92
1887 2466 0.038021 TGGTGGTGGTGGTGATGATG 59.962 55.000 0.00 0.00 0.00 3.07
1888 2467 0.038166 GTGGTGGTGGTGGTGATGAT 59.962 55.000 0.00 0.00 0.00 2.45
1889 2468 1.454104 GTGGTGGTGGTGGTGATGA 59.546 57.895 0.00 0.00 0.00 2.92
1890 2469 1.603455 GGTGGTGGTGGTGGTGATG 60.603 63.158 0.00 0.00 0.00 3.07
1981 2562 8.580720 TCTAGAATAATCAGCTAGGAATGTGTC 58.419 37.037 0.00 0.00 33.97 3.67
2014 2595 5.123936 AGAGTATTTTATGTCCCGAAAGCC 58.876 41.667 0.00 0.00 0.00 4.35
2103 2692 9.392259 CCCTCCTAAGAAAACGTAGAAATATTT 57.608 33.333 0.00 0.00 0.00 1.40
2104 2693 8.546322 ACCCTCCTAAGAAAACGTAGAAATATT 58.454 33.333 0.00 0.00 0.00 1.28
2105 2694 8.087303 ACCCTCCTAAGAAAACGTAGAAATAT 57.913 34.615 0.00 0.00 0.00 1.28
2106 2695 7.486407 ACCCTCCTAAGAAAACGTAGAAATA 57.514 36.000 0.00 0.00 0.00 1.40
2161 2754 6.929446 TTAATCCCAGGTTTTTCCCCTATA 57.071 37.500 0.00 0.00 36.75 1.31
2168 2761 8.590204 TGGATAAGTTTTAATCCCAGGTTTTTC 58.410 33.333 1.48 0.00 40.91 2.29
2174 2767 7.320399 GTGTTTGGATAAGTTTTAATCCCAGG 58.680 38.462 1.48 0.00 40.91 4.45
2232 2997 2.035632 TGGGCGTGAAGGATTGTTTTT 58.964 42.857 0.00 0.00 0.00 1.94
2233 2998 1.698506 TGGGCGTGAAGGATTGTTTT 58.301 45.000 0.00 0.00 0.00 2.43
2271 3037 5.107065 CGTTCGCCTAGTTTTCTTCTGAAAT 60.107 40.000 0.00 0.00 41.24 2.17
2277 3043 5.346822 TGTTATCGTTCGCCTAGTTTTCTTC 59.653 40.000 0.00 0.00 0.00 2.87
2322 3088 4.767633 CTCTCCGAGGAAACGTCG 57.232 61.111 6.83 6.83 37.17 5.12
2333 3099 4.785453 GCTTGCCACCCCTCTCCG 62.785 72.222 0.00 0.00 0.00 4.63
2345 3111 1.591158 CATCAAATGGCATTCGCTTGC 59.409 47.619 14.04 1.24 42.01 4.01
2350 3116 6.497437 TGAAACTATCATCAAATGGCATTCG 58.503 36.000 14.04 1.68 31.50 3.34
2354 3120 6.433716 TCAACTGAAACTATCATCAAATGGCA 59.566 34.615 0.00 0.00 37.44 4.92
2373 3155 6.966632 TGTCGTTTGATTTTTCTTCTCAACTG 59.033 34.615 0.00 0.00 0.00 3.16
2379 3161 6.852664 ACTGTTGTCGTTTGATTTTTCTTCT 58.147 32.000 0.00 0.00 0.00 2.85
2387 3169 8.522178 TGTTTTAAAACTGTTGTCGTTTGATT 57.478 26.923 26.76 0.00 39.59 2.57
2446 3228 2.650322 GGGATGGCCGTTTATTCAGAA 58.350 47.619 0.00 0.00 33.83 3.02
2448 3230 0.944386 CGGGATGGCCGTTTATTCAG 59.056 55.000 0.00 0.00 33.83 3.02
2450 3232 1.098712 TGCGGGATGGCCGTTTATTC 61.099 55.000 0.00 0.00 33.83 1.75
2457 3239 1.380403 TTTATTGTGCGGGATGGCCG 61.380 55.000 0.00 0.00 33.83 6.13
2458 3240 0.820871 TTTTATTGTGCGGGATGGCC 59.179 50.000 0.00 0.00 0.00 5.36
2467 3249 8.911662 ACGTTTTAGATGTCATTTTTATTGTGC 58.088 29.630 0.00 0.00 0.00 4.57
2471 3253 8.846607 GCGAACGTTTTAGATGTCATTTTTATT 58.153 29.630 0.46 0.00 0.00 1.40
2481 3265 3.181520 GCATCTGCGAACGTTTTAGATGT 60.182 43.478 29.85 11.78 44.00 3.06
2499 3283 2.479566 TTGTCAGGAAGAGTGGCATC 57.520 50.000 0.00 0.00 27.45 3.91
2507 3291 1.214367 GCGAACGTTTGTCAGGAAGA 58.786 50.000 16.75 0.00 0.00 2.87
2517 3301 1.463444 GCTCATAACTGGCGAACGTTT 59.537 47.619 0.46 0.00 0.00 3.60
2554 3346 6.266131 AGATGTTGTGGTATGATGGGTTAT 57.734 37.500 0.00 0.00 0.00 1.89
2558 3350 4.949238 TGAAAGATGTTGTGGTATGATGGG 59.051 41.667 0.00 0.00 0.00 4.00
2566 3358 1.946768 CGTGGTGAAAGATGTTGTGGT 59.053 47.619 0.00 0.00 0.00 4.16
2581 3375 3.296709 CTGGAGTTAGCGGCGTGGT 62.297 63.158 9.37 0.00 0.00 4.16
2635 3429 3.157252 GCGATGGGAGGAGGCTCA 61.157 66.667 17.69 0.00 0.00 4.26
2655 3449 1.255667 GGCTCAGTGTCGGGAGGTAA 61.256 60.000 0.00 0.00 0.00 2.85
2709 3509 0.392998 GAGGAGGCTCGAAATTGGCA 60.393 55.000 8.69 0.00 0.00 4.92
2718 4118 1.743321 GAGATGTGGGAGGAGGCTCG 61.743 65.000 8.69 0.00 0.00 5.03
2738 4138 2.639327 GCCTTGCGGAATGTGCCTT 61.639 57.895 0.00 0.00 0.00 4.35
2767 4167 3.365265 CTGTGGTTTGGCTCGGGC 61.365 66.667 0.00 0.00 37.82 6.13
2793 4193 4.759516 TTGAATTCCTAGTTTCGGCAAC 57.240 40.909 2.27 0.00 35.32 4.17
2795 4195 4.394729 AGTTTGAATTCCTAGTTTCGGCA 58.605 39.130 2.27 0.00 0.00 5.69
2801 4201 4.892934 TGTGCCAAGTTTGAATTCCTAGTT 59.107 37.500 2.27 0.00 0.00 2.24
2803 4203 5.222631 GTTGTGCCAAGTTTGAATTCCTAG 58.777 41.667 2.27 0.00 0.00 3.02
2805 4205 3.181466 GGTTGTGCCAAGTTTGAATTCCT 60.181 43.478 2.27 0.00 37.17 3.36
2813 4213 0.261696 AGGGAGGTTGTGCCAAGTTT 59.738 50.000 0.00 0.00 39.84 2.66
2814 4214 0.178990 GAGGGAGGTTGTGCCAAGTT 60.179 55.000 0.00 0.00 39.84 2.66
2815 4215 1.456287 GAGGGAGGTTGTGCCAAGT 59.544 57.895 0.00 0.00 39.84 3.16
2816 4216 1.303643 GGAGGGAGGTTGTGCCAAG 60.304 63.158 0.00 0.00 39.84 3.61
2817 4217 2.840753 GGGAGGGAGGTTGTGCCAA 61.841 63.158 0.00 0.00 39.84 4.52
2818 4218 3.256960 GGGAGGGAGGTTGTGCCA 61.257 66.667 0.00 0.00 39.84 4.92
2819 4219 2.558380 GATGGGAGGGAGGTTGTGCC 62.558 65.000 0.00 0.00 36.73 5.01
2820 4220 1.077429 GATGGGAGGGAGGTTGTGC 60.077 63.158 0.00 0.00 0.00 4.57
2821 4221 1.609783 GGATGGGAGGGAGGTTGTG 59.390 63.158 0.00 0.00 0.00 3.33
2822 4222 1.995626 CGGATGGGAGGGAGGTTGT 60.996 63.158 0.00 0.00 0.00 3.32
2823 4223 2.746375 CCGGATGGGAGGGAGGTTG 61.746 68.421 0.00 0.00 38.47 3.77
2824 4224 2.366972 CCGGATGGGAGGGAGGTT 60.367 66.667 0.00 0.00 38.47 3.50
2826 4226 3.468390 TAGCCGGATGGGAGGGAGG 62.468 68.421 5.05 0.00 38.47 4.30
2827 4227 2.201490 TAGCCGGATGGGAGGGAG 59.799 66.667 5.05 0.00 38.47 4.30
2828 4228 2.122989 GTAGCCGGATGGGAGGGA 60.123 66.667 5.05 0.00 38.47 4.20
2829 4229 3.242291 GGTAGCCGGATGGGAGGG 61.242 72.222 5.05 0.00 38.47 4.30
2830 4230 2.445845 TGGTAGCCGGATGGGAGG 60.446 66.667 5.05 0.00 38.47 4.30
2831 4231 2.822399 GTGGTAGCCGGATGGGAG 59.178 66.667 5.05 0.00 38.47 4.30
2832 4232 3.151710 CGTGGTAGCCGGATGGGA 61.152 66.667 5.05 0.00 38.47 4.37
2833 4233 3.151710 TCGTGGTAGCCGGATGGG 61.152 66.667 5.05 0.00 39.58 4.00
2834 4234 2.106332 GTCGTGGTAGCCGGATGG 59.894 66.667 5.05 0.00 38.77 3.51
2835 4235 2.278596 CGTCGTGGTAGCCGGATG 60.279 66.667 5.05 0.00 0.00 3.51
2836 4236 2.438975 TCGTCGTGGTAGCCGGAT 60.439 61.111 5.05 0.00 0.00 4.18
2837 4237 3.434319 GTCGTCGTGGTAGCCGGA 61.434 66.667 5.05 0.00 0.00 5.14
2838 4238 4.824166 CGTCGTCGTGGTAGCCGG 62.824 72.222 0.00 0.00 0.00 6.13
2848 4248 2.098871 TCGCCACATACGTCGTCG 59.901 61.111 0.00 0.00 43.34 5.12
2849 4249 1.870901 GGTCGCCACATACGTCGTC 60.871 63.158 0.00 0.00 0.00 4.20
2850 4250 2.180017 GGTCGCCACATACGTCGT 59.820 61.111 2.21 2.21 0.00 4.34
2851 4251 1.585521 GAGGTCGCCACATACGTCG 60.586 63.158 0.00 0.00 0.00 5.12
2852 4252 1.226888 GGAGGTCGCCACATACGTC 60.227 63.158 0.00 0.00 0.00 4.34
2853 4253 1.681327 AGGAGGTCGCCACATACGT 60.681 57.895 0.00 0.00 0.00 3.57
2854 4254 1.226974 CAGGAGGTCGCCACATACG 60.227 63.158 0.00 0.00 0.00 3.06
2855 4255 1.521681 GCAGGAGGTCGCCACATAC 60.522 63.158 0.00 0.00 0.00 2.39
2856 4256 2.900273 GCAGGAGGTCGCCACATA 59.100 61.111 0.00 0.00 0.00 2.29
2888 4436 6.308524 CGAACATATTGTGTGTAAACGGTAGA 59.691 38.462 0.00 0.00 41.14 2.59
2891 4439 4.989797 TCGAACATATTGTGTGTAAACGGT 59.010 37.500 0.00 0.00 41.14 4.83
2892 4440 5.310489 GTCGAACATATTGTGTGTAAACGG 58.690 41.667 0.00 0.00 41.14 4.44
2894 4442 5.118971 TCCGTCGAACATATTGTGTGTAAAC 59.881 40.000 0.00 0.00 41.14 2.01
2897 4445 4.437772 TCCGTCGAACATATTGTGTGTA 57.562 40.909 0.00 0.00 41.14 2.90
2898 4446 3.306917 TCCGTCGAACATATTGTGTGT 57.693 42.857 0.00 0.00 41.14 3.72
2899 4447 4.328712 TCATTCCGTCGAACATATTGTGTG 59.671 41.667 0.00 0.00 41.14 3.82
2915 4465 7.502120 AAAAGAATGTGGATATCTCATTCCG 57.498 36.000 28.66 0.00 44.60 4.30
2952 4559 9.777297 AAAACCATGTTTGCTATATTTTCACTT 57.223 25.926 0.00 0.00 0.00 3.16
2966 4573 8.879342 TTTGTATGTAAGGAAAACCATGTTTG 57.121 30.769 0.00 0.00 0.00 2.93
2967 4574 9.541143 CTTTTGTATGTAAGGAAAACCATGTTT 57.459 29.630 0.00 0.00 0.00 2.83
2979 4589 4.250464 TCGCACCTCTTTTGTATGTAAGG 58.750 43.478 0.00 0.00 0.00 2.69
3003 4674 7.834681 GGGTAATCCAGGTTTTTCTTCTTCTAT 59.165 37.037 0.00 0.00 35.00 1.98
3018 4689 4.948004 GGTGTTTTCTTAGGGTAATCCAGG 59.052 45.833 0.00 0.00 38.24 4.45
3019 4690 5.648092 CAGGTGTTTTCTTAGGGTAATCCAG 59.352 44.000 0.00 0.00 38.24 3.86
3020 4691 5.515886 CCAGGTGTTTTCTTAGGGTAATCCA 60.516 44.000 0.00 0.00 38.24 3.41
3021 4692 4.948004 CCAGGTGTTTTCTTAGGGTAATCC 59.052 45.833 0.00 0.00 0.00 3.01
3022 4693 5.812286 TCCAGGTGTTTTCTTAGGGTAATC 58.188 41.667 0.00 0.00 0.00 1.75
3023 4694 5.853572 TCCAGGTGTTTTCTTAGGGTAAT 57.146 39.130 0.00 0.00 0.00 1.89
3024 4695 5.853572 ATCCAGGTGTTTTCTTAGGGTAA 57.146 39.130 0.00 0.00 0.00 2.85
3025 4696 6.266080 TCTATCCAGGTGTTTTCTTAGGGTA 58.734 40.000 0.00 0.00 0.00 3.69
3026 4697 5.098663 TCTATCCAGGTGTTTTCTTAGGGT 58.901 41.667 0.00 0.00 0.00 4.34
3027 4698 5.189934 ACTCTATCCAGGTGTTTTCTTAGGG 59.810 44.000 0.00 0.00 0.00 3.53
3028 4699 6.301169 ACTCTATCCAGGTGTTTTCTTAGG 57.699 41.667 0.00 0.00 0.00 2.69
3029 4700 8.507249 CAAAACTCTATCCAGGTGTTTTCTTAG 58.493 37.037 0.00 0.00 37.06 2.18
3030 4701 8.215050 TCAAAACTCTATCCAGGTGTTTTCTTA 58.785 33.333 0.00 0.00 37.06 2.10
3031 4702 7.060421 TCAAAACTCTATCCAGGTGTTTTCTT 58.940 34.615 0.00 0.00 37.06 2.52
3032 4703 6.601332 TCAAAACTCTATCCAGGTGTTTTCT 58.399 36.000 0.00 0.00 37.06 2.52
3033 4704 6.072452 CCTCAAAACTCTATCCAGGTGTTTTC 60.072 42.308 0.00 0.00 37.06 2.29
3034 4705 5.770162 CCTCAAAACTCTATCCAGGTGTTTT 59.230 40.000 0.00 0.00 38.31 2.43
3035 4706 5.073144 TCCTCAAAACTCTATCCAGGTGTTT 59.927 40.000 0.00 0.00 33.47 2.83
3036 4707 4.597507 TCCTCAAAACTCTATCCAGGTGTT 59.402 41.667 0.00 0.00 0.00 3.32
3037 4708 4.168101 TCCTCAAAACTCTATCCAGGTGT 58.832 43.478 0.00 0.00 0.00 4.16
3038 4709 4.826274 TCCTCAAAACTCTATCCAGGTG 57.174 45.455 0.00 0.00 0.00 4.00
3047 4718 2.693069 CGTCAGCATCCTCAAAACTCT 58.307 47.619 0.00 0.00 0.00 3.24
3048 4719 1.129437 GCGTCAGCATCCTCAAAACTC 59.871 52.381 0.00 0.00 44.35 3.01
3206 4882 0.663153 AGCGAGGCATTTATTTCGGC 59.337 50.000 0.00 0.00 33.89 5.54
3226 4902 1.588082 CCACATGCTGCCTGTTTCC 59.412 57.895 7.87 0.00 0.00 3.13
3323 4999 2.187946 GCGGGAGGATCACTGTGG 59.812 66.667 8.11 0.00 35.27 4.17
3472 5156 0.105760 ACGAGGCAGATGGATCTCCT 60.106 55.000 0.00 7.13 37.25 3.69
3516 5200 1.001181 GAAGCGGTGGTGGTTACAGTA 59.999 52.381 0.00 0.00 0.00 2.74
3603 5287 2.042162 AGGAACGGAAGGAGTACTGGTA 59.958 50.000 0.00 0.00 0.00 3.25
3604 5288 1.203149 AGGAACGGAAGGAGTACTGGT 60.203 52.381 0.00 0.00 0.00 4.00
3605 5289 1.558233 AGGAACGGAAGGAGTACTGG 58.442 55.000 0.00 0.00 0.00 4.00
3606 5290 4.796038 TTTAGGAACGGAAGGAGTACTG 57.204 45.455 0.00 0.00 0.00 2.74
3607 5291 7.672122 AATATTTAGGAACGGAAGGAGTACT 57.328 36.000 0.00 0.00 0.00 2.73
3608 5292 7.767659 ACAAATATTTAGGAACGGAAGGAGTAC 59.232 37.037 0.00 0.00 0.00 2.73
3610 5294 6.718294 ACAAATATTTAGGAACGGAAGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
3611 5295 7.625828 AACAAATATTTAGGAACGGAAGGAG 57.374 36.000 0.00 0.00 0.00 3.69
3612 5296 8.411991 AAAACAAATATTTAGGAACGGAAGGA 57.588 30.769 0.00 0.00 0.00 3.36
3681 5365 9.080097 AGTGAATATACGCTCTAAAATAGGAGT 57.920 33.333 0.00 0.00 32.67 3.85
3682 5366 9.562583 GAGTGAATATACGCTCTAAAATAGGAG 57.437 37.037 0.00 0.00 42.10 3.69
3683 5367 8.235226 CGAGTGAATATACGCTCTAAAATAGGA 58.765 37.037 0.00 0.00 42.86 2.94
3684 5368 8.021973 ACGAGTGAATATACGCTCTAAAATAGG 58.978 37.037 0.00 0.00 42.86 2.57
3685 5369 8.951954 ACGAGTGAATATACGCTCTAAAATAG 57.048 34.615 0.00 0.00 42.86 1.73
3686 5370 9.740239 AAACGAGTGAATATACGCTCTAAAATA 57.260 29.630 0.00 0.00 42.86 1.40
3687 5371 8.644318 AAACGAGTGAATATACGCTCTAAAAT 57.356 30.769 0.00 0.00 42.86 1.82
3688 5372 8.377681 CAAAACGAGTGAATATACGCTCTAAAA 58.622 33.333 0.00 0.00 42.86 1.52
3689 5373 7.463648 GCAAAACGAGTGAATATACGCTCTAAA 60.464 37.037 0.00 0.00 42.86 1.85
3690 5374 6.020121 GCAAAACGAGTGAATATACGCTCTAA 60.020 38.462 0.00 0.00 42.86 2.10
3691 5375 5.457799 GCAAAACGAGTGAATATACGCTCTA 59.542 40.000 0.00 0.00 42.86 2.43
3692 5376 4.267928 GCAAAACGAGTGAATATACGCTCT 59.732 41.667 0.00 0.00 42.86 4.09
3693 5377 4.267928 AGCAAAACGAGTGAATATACGCTC 59.732 41.667 0.00 0.00 41.99 5.03
3694 5378 4.181578 AGCAAAACGAGTGAATATACGCT 58.818 39.130 0.00 0.00 0.00 5.07
3695 5379 4.516092 AGCAAAACGAGTGAATATACGC 57.484 40.909 0.00 0.00 0.00 4.42
3696 5380 5.181084 CGAAGCAAAACGAGTGAATATACG 58.819 41.667 0.00 0.00 0.00 3.06
3697 5381 6.091123 ACGAAGCAAAACGAGTGAATATAC 57.909 37.500 0.00 0.00 0.00 1.47
3698 5382 7.490079 ACATACGAAGCAAAACGAGTGAATATA 59.510 33.333 0.00 0.00 0.00 0.86
3699 5383 6.312918 ACATACGAAGCAAAACGAGTGAATAT 59.687 34.615 0.00 0.00 0.00 1.28
3700 5384 5.636121 ACATACGAAGCAAAACGAGTGAATA 59.364 36.000 0.00 0.00 0.00 1.75
3701 5385 4.451096 ACATACGAAGCAAAACGAGTGAAT 59.549 37.500 0.00 0.00 0.00 2.57
3702 5386 3.805422 ACATACGAAGCAAAACGAGTGAA 59.195 39.130 0.00 0.00 0.00 3.18
3703 5387 3.386486 ACATACGAAGCAAAACGAGTGA 58.614 40.909 0.00 0.00 0.00 3.41
3704 5388 3.788434 ACATACGAAGCAAAACGAGTG 57.212 42.857 0.00 0.00 0.00 3.51
3705 5389 4.553323 ACTACATACGAAGCAAAACGAGT 58.447 39.130 0.00 0.00 0.00 4.18
3706 5390 5.511088 AACTACATACGAAGCAAAACGAG 57.489 39.130 0.00 0.00 0.00 4.18
3707 5391 6.151691 AGTAACTACATACGAAGCAAAACGA 58.848 36.000 0.00 0.00 0.00 3.85
3708 5392 6.385537 AGTAACTACATACGAAGCAAAACG 57.614 37.500 0.00 0.00 0.00 3.60
3709 5393 7.570161 ACAAGTAACTACATACGAAGCAAAAC 58.430 34.615 0.00 0.00 0.00 2.43
3710 5394 7.718272 ACAAGTAACTACATACGAAGCAAAA 57.282 32.000 0.00 0.00 0.00 2.44
3711 5395 7.438757 TCAACAAGTAACTACATACGAAGCAAA 59.561 33.333 0.00 0.00 0.00 3.68
3712 5396 6.924612 TCAACAAGTAACTACATACGAAGCAA 59.075 34.615 0.00 0.00 0.00 3.91
3713 5397 6.448852 TCAACAAGTAACTACATACGAAGCA 58.551 36.000 0.00 0.00 0.00 3.91
3714 5398 6.939551 TCAACAAGTAACTACATACGAAGC 57.060 37.500 0.00 0.00 0.00 3.86
3750 5434 9.802039 TGTACCTCTGTTCCTAAATATTTGTTT 57.198 29.630 11.05 0.00 0.00 2.83
3751 5435 9.975218 ATGTACCTCTGTTCCTAAATATTTGTT 57.025 29.630 11.05 0.00 0.00 2.83
3752 5436 9.396022 CATGTACCTCTGTTCCTAAATATTTGT 57.604 33.333 11.05 0.00 0.00 2.83
3753 5437 8.840321 CCATGTACCTCTGTTCCTAAATATTTG 58.160 37.037 11.05 1.40 0.00 2.32
3754 5438 7.502561 GCCATGTACCTCTGTTCCTAAATATTT 59.497 37.037 5.89 5.89 0.00 1.40
3755 5439 6.998673 GCCATGTACCTCTGTTCCTAAATATT 59.001 38.462 0.00 0.00 0.00 1.28
3756 5440 6.101150 TGCCATGTACCTCTGTTCCTAAATAT 59.899 38.462 0.00 0.00 0.00 1.28
3757 5441 5.427157 TGCCATGTACCTCTGTTCCTAAATA 59.573 40.000 0.00 0.00 0.00 1.40
3758 5442 4.227300 TGCCATGTACCTCTGTTCCTAAAT 59.773 41.667 0.00 0.00 0.00 1.40
3759 5443 3.585289 TGCCATGTACCTCTGTTCCTAAA 59.415 43.478 0.00 0.00 0.00 1.85
3760 5444 3.178046 TGCCATGTACCTCTGTTCCTAA 58.822 45.455 0.00 0.00 0.00 2.69
3761 5445 2.766263 CTGCCATGTACCTCTGTTCCTA 59.234 50.000 0.00 0.00 0.00 2.94
3762 5446 1.556911 CTGCCATGTACCTCTGTTCCT 59.443 52.381 0.00 0.00 0.00 3.36
3763 5447 1.279271 ACTGCCATGTACCTCTGTTCC 59.721 52.381 0.00 0.00 0.00 3.62
3764 5448 2.770164 ACTGCCATGTACCTCTGTTC 57.230 50.000 0.00 0.00 0.00 3.18
3765 5449 4.019321 ACATTACTGCCATGTACCTCTGTT 60.019 41.667 0.00 0.00 32.88 3.16
3766 5450 3.519510 ACATTACTGCCATGTACCTCTGT 59.480 43.478 0.00 0.00 32.88 3.41
3767 5451 4.142609 ACATTACTGCCATGTACCTCTG 57.857 45.455 0.00 0.00 32.88 3.35
3768 5452 4.844349 AACATTACTGCCATGTACCTCT 57.156 40.909 0.00 0.00 33.54 3.69
3769 5453 4.034048 CGAAACATTACTGCCATGTACCTC 59.966 45.833 0.00 0.00 33.54 3.85
3770 5454 3.938963 CGAAACATTACTGCCATGTACCT 59.061 43.478 0.00 0.00 33.54 3.08
3771 5455 3.486875 GCGAAACATTACTGCCATGTACC 60.487 47.826 0.00 0.00 33.54 3.34
3772 5456 3.374058 AGCGAAACATTACTGCCATGTAC 59.626 43.478 0.00 0.00 33.54 2.90
3773 5457 3.605634 AGCGAAACATTACTGCCATGTA 58.394 40.909 0.00 0.00 33.54 2.29
3774 5458 2.436417 AGCGAAACATTACTGCCATGT 58.564 42.857 0.00 0.00 36.36 3.21
3775 5459 3.173599 CAAGCGAAACATTACTGCCATG 58.826 45.455 0.00 0.00 0.00 3.66
3776 5460 2.819608 ACAAGCGAAACATTACTGCCAT 59.180 40.909 0.00 0.00 0.00 4.40
3777 5461 2.031245 CACAAGCGAAACATTACTGCCA 60.031 45.455 0.00 0.00 0.00 4.92
3778 5462 2.031157 ACACAAGCGAAACATTACTGCC 60.031 45.455 0.00 0.00 0.00 4.85
3779 5463 3.268013 ACACAAGCGAAACATTACTGC 57.732 42.857 0.00 0.00 0.00 4.40
3832 5518 2.028484 TCGTGCACCGAGTTGGAC 59.972 61.111 12.15 0.00 41.60 4.02
3982 5668 2.753966 CGCTCCATTTGCCTGGTCG 61.754 63.158 0.00 0.00 37.57 4.79
3986 5672 1.798735 CAGACGCTCCATTTGCCTG 59.201 57.895 0.00 0.00 0.00 4.85
3988 5674 2.486966 GCAGACGCTCCATTTGCC 59.513 61.111 0.00 0.00 34.30 4.52
4024 5710 0.322975 AGTGAACGCCAGCTTGATCT 59.677 50.000 0.00 0.00 0.00 2.75
4027 5713 1.165907 CCAAGTGAACGCCAGCTTGA 61.166 55.000 15.37 0.00 36.70 3.02
4176 5888 7.636036 AACCTATCTAGTCTAGAGGCTAGAA 57.364 40.000 21.46 11.81 44.44 2.10
4224 5941 2.508526 CCAGCCAAATATACAGAGCCC 58.491 52.381 0.00 0.00 0.00 5.19
4327 6044 0.737715 GGCTACCGTCAACTGCTGAG 60.738 60.000 0.00 0.00 33.60 3.35
4411 6137 6.599638 GGGTATCCAAATAACCTGATCTATGC 59.400 42.308 0.00 0.00 41.41 3.14
4431 6157 6.494952 AGTATGCTAGTATGTGCTAGGGTAT 58.505 40.000 3.24 0.00 38.98 2.73
4448 6174 8.502738 TGGAATTCCCTCTTTTTATAGTATGCT 58.497 33.333 21.90 0.00 35.38 3.79
4480 6278 6.524933 TGTCACAAACGTGAATTTTAAGTGTG 59.475 34.615 0.00 0.00 44.79 3.82
4538 6337 6.814954 AGTCCAGTCAACATATAATGAGGT 57.185 37.500 0.00 0.00 0.00 3.85
4542 6341 6.524734 TGGCTAGTCCAGTCAACATATAATG 58.475 40.000 2.19 0.00 40.72 1.90
4573 6372 9.191995 GGCCAATCAGATAAAATATAAAAACCG 57.808 33.333 0.00 0.00 0.00 4.44
4583 6382 2.624838 CAGGCGGCCAATCAGATAAAAT 59.375 45.455 23.09 0.00 0.00 1.82
4596 6395 1.182667 AAAAGAAATACCAGGCGGCC 58.817 50.000 12.11 12.11 34.57 6.13
4650 6449 7.039714 ACAGGAAACTAAAATGAGGTCAAATCC 60.040 37.037 0.00 0.00 40.21 3.01
4673 6472 2.880268 TGTCAACTTCATGGCAAGACAG 59.120 45.455 0.00 0.00 30.65 3.51
4868 6688 5.008415 GGATCTGCCAGAATGTGAACTAATG 59.992 44.000 0.00 0.00 36.34 1.90
4869 6689 5.128919 GGATCTGCCAGAATGTGAACTAAT 58.871 41.667 0.00 0.00 36.34 1.73
4902 6722 2.835705 ATCCGGCTAGTCGCGACAG 61.836 63.158 37.85 30.42 40.44 3.51
4986 6806 7.560262 CCATCCATATGATCAAGCAGGAAATAT 59.440 37.037 3.65 0.00 34.84 1.28
4989 6809 5.074804 CCATCCATATGATCAAGCAGGAAA 58.925 41.667 3.65 0.00 34.84 3.13
5056 6877 1.265568 CACGTCAAACCCTCGATACG 58.734 55.000 0.00 0.00 36.48 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.