Multiple sequence alignment - TraesCS3D01G430600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G430600 chr3D 100.000 6837 0 0 1 6837 544820979 544827815 0.000000e+00 12626.0
1 TraesCS3D01G430600 chr3D 88.931 3460 276 41 2778 6180 545033020 545036429 0.000000e+00 4169.0
2 TraesCS3D01G430600 chr3D 87.818 2791 278 27 2832 5591 545073603 545076362 0.000000e+00 3214.0
3 TraesCS3D01G430600 chr3D 87.479 1781 193 11 2832 4612 545060638 545062388 0.000000e+00 2026.0
4 TraesCS3D01G430600 chr3D 87.492 1575 126 21 4638 6180 545062450 545063985 0.000000e+00 1751.0
5 TraesCS3D01G430600 chr3D 85.570 1580 170 34 1010 2533 545031396 545032973 0.000000e+00 1602.0
6 TraesCS3D01G430600 chr3D 87.650 1417 126 23 4638 6027 545157198 545158592 0.000000e+00 1602.0
7 TraesCS3D01G430600 chr3D 85.113 1498 159 30 1024 2478 545071960 545073436 0.000000e+00 1472.0
8 TraesCS3D01G430600 chr3D 82.520 1722 198 49 784 2491 545153748 545155380 0.000000e+00 1417.0
9 TraesCS3D01G430600 chr3D 84.250 1200 143 21 1010 2168 545054261 545055455 0.000000e+00 1127.0
10 TraesCS3D01G430600 chr3D 87.571 531 41 13 6311 6835 545036442 545036953 5.900000e-165 592.0
11 TraesCS3D01G430600 chr3D 85.122 531 53 14 6308 6837 545064725 545065230 2.830000e-143 520.0
12 TraesCS3D01G430600 chr3D 94.561 239 11 2 1 238 424493589 424493352 1.080000e-97 368.0
13 TraesCS3D01G430600 chr3D 83.820 377 41 12 2164 2533 545060252 545060615 2.360000e-89 340.0
14 TraesCS3D01G430600 chr3D 87.607 234 20 4 2836 3069 545155402 545155626 5.260000e-66 263.0
15 TraesCS3D01G430600 chr3D 82.188 320 33 15 6522 6828 545158726 545159034 3.160000e-63 254.0
16 TraesCS3D01G430600 chr3D 83.268 257 22 9 5931 6175 545064461 545064708 4.150000e-52 217.0
17 TraesCS3D01G430600 chr3A 87.466 5920 530 90 1010 6837 681560188 681565987 0.000000e+00 6626.0
18 TraesCS3D01G430600 chr3A 88.206 3451 306 44 2778 6179 681652746 681656144 0.000000e+00 4024.0
19 TraesCS3D01G430600 chr3A 93.590 2621 162 2 2874 5491 681465848 681468465 0.000000e+00 3904.0
20 TraesCS3D01G430600 chr3A 88.471 3270 301 39 2832 6055 681663006 681666245 0.000000e+00 3880.0
21 TraesCS3D01G430600 chr3A 87.740 3385 306 42 2839 6180 681523422 681526740 0.000000e+00 3851.0
22 TraesCS3D01G430600 chr3A 89.014 2303 165 51 303 2553 681463570 681465836 0.000000e+00 2771.0
23 TraesCS3D01G430600 chr3A 84.927 1506 166 23 1010 2477 681661445 681662927 0.000000e+00 1467.0
24 TraesCS3D01G430600 chr3A 83.730 1469 187 21 1010 2443 681521905 681523356 0.000000e+00 1341.0
25 TraesCS3D01G430600 chr3A 89.787 940 57 15 5268 6184 681640369 681641292 0.000000e+00 1168.0
26 TraesCS3D01G430600 chr3A 88.622 791 81 6 1634 2418 681651285 681652072 0.000000e+00 953.0
27 TraesCS3D01G430600 chr3A 92.117 647 30 9 5476 6111 681468502 681469138 0.000000e+00 893.0
28 TraesCS3D01G430600 chr3A 90.363 633 47 8 886 1514 681650588 681651210 0.000000e+00 819.0
29 TraesCS3D01G430600 chr3A 86.792 530 47 12 6311 6837 681641305 681641814 2.770000e-158 569.0
30 TraesCS3D01G430600 chr3A 82.625 541 51 21 6308 6837 681469844 681470352 8.140000e-119 438.0
31 TraesCS3D01G430600 chr3A 85.260 346 32 8 6158 6492 681469132 681469469 8.490000e-89 339.0
32 TraesCS3D01G430600 chr3A 85.312 320 30 8 6522 6828 681666354 681666669 1.430000e-81 315.0
33 TraesCS3D01G430600 chr3A 82.289 367 34 11 5825 6175 681469476 681469827 8.680000e-74 289.0
34 TraesCS3D01G430600 chr3A 94.915 59 2 1 6779 6837 681472859 681472916 2.630000e-14 91.6
35 TraesCS3D01G430600 chr3A 83.000 100 12 4 6522 6616 681469171 681469270 1.220000e-12 86.1
36 TraesCS3D01G430600 chr3B 88.187 3623 301 59 2610 6180 720989248 720992795 0.000000e+00 4202.0
37 TraesCS3D01G430600 chr3B 88.561 3392 293 34 2832 6180 721039063 721042402 0.000000e+00 4026.0
38 TraesCS3D01G430600 chr3B 87.704 3497 318 45 2832 6269 721046211 721049654 0.000000e+00 3973.0
39 TraesCS3D01G430600 chr3B 87.890 2535 202 48 307 2776 720986369 720988863 0.000000e+00 2883.0
40 TraesCS3D01G430600 chr3B 87.551 1462 153 15 1016 2457 721037275 721038727 0.000000e+00 1664.0
41 TraesCS3D01G430600 chr3B 84.813 1442 173 20 1011 2418 721044022 721045451 0.000000e+00 1408.0
42 TraesCS3D01G430600 chr3B 83.863 409 40 12 6311 6710 720992803 720993194 3.900000e-97 366.0
43 TraesCS3D01G430600 chr3B 95.745 94 3 1 6739 6831 720993648 720993741 4.270000e-32 150.0
44 TraesCS3D01G430600 chr2D 85.578 3349 365 49 2832 6120 528322652 528325942 0.000000e+00 3400.0
45 TraesCS3D01G430600 chr2D 94.142 239 10 3 1 238 640367485 640367720 1.810000e-95 361.0
46 TraesCS3D01G430600 chr1A 82.841 3386 426 77 2840 6171 551635084 551631800 0.000000e+00 2891.0
47 TraesCS3D01G430600 chr1A 94.142 239 11 3 1 239 45858644 45858879 1.810000e-95 361.0
48 TraesCS3D01G430600 chr1A 93.750 240 13 2 1 240 476979510 476979273 6.520000e-95 359.0
49 TraesCS3D01G430600 chr1A 78.957 537 63 22 1817 2324 551635623 551635108 3.080000e-83 320.0
50 TraesCS3D01G430600 chr1D 82.461 1414 158 44 4693 6078 460148207 460146856 0.000000e+00 1155.0
51 TraesCS3D01G430600 chr1D 81.959 194 23 10 2785 2969 460150163 460149973 3.300000e-33 154.0
52 TraesCS3D01G430600 chr1B 82.014 1390 161 47 4700 6057 632015039 632013707 0.000000e+00 1099.0
53 TraesCS3D01G430600 chr1B 82.796 186 25 6 2786 2969 632016992 632016812 7.100000e-35 159.0
54 TraesCS3D01G430600 chr7D 95.339 236 10 1 1 236 133690350 133690116 2.330000e-99 374.0
55 TraesCS3D01G430600 chr7D 94.979 239 8 4 1 238 610487059 610486824 8.370000e-99 372.0
56 TraesCS3D01G430600 chr7D 94.068 236 12 2 1 235 207186584 207186818 2.340000e-94 357.0
57 TraesCS3D01G430600 chr5A 93.388 242 12 3 1 241 184259384 184259622 8.430000e-94 355.0
58 TraesCS3D01G430600 chr2A 93.697 238 13 2 1 238 724728777 724728542 8.430000e-94 355.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G430600 chr3D 544820979 544827815 6836 False 12626.000000 12626 100.000000 1 6837 1 chr3D.!!$F1 6836
1 TraesCS3D01G430600 chr3D 545071960 545076362 4402 False 2343.000000 3214 86.465500 1024 5591 2 chr3D.!!$F5 4567
2 TraesCS3D01G430600 chr3D 545031396 545036953 5557 False 2121.000000 4169 87.357333 1010 6835 3 chr3D.!!$F3 5825
3 TraesCS3D01G430600 chr3D 545054261 545055455 1194 False 1127.000000 1127 84.250000 1010 2168 1 chr3D.!!$F2 1158
4 TraesCS3D01G430600 chr3D 545060252 545065230 4978 False 970.800000 2026 85.436200 2164 6837 5 chr3D.!!$F4 4673
5 TraesCS3D01G430600 chr3D 545153748 545159034 5286 False 884.000000 1602 84.991250 784 6828 4 chr3D.!!$F6 6044
6 TraesCS3D01G430600 chr3A 681560188 681565987 5799 False 6626.000000 6626 87.466000 1010 6837 1 chr3A.!!$F1 5827
7 TraesCS3D01G430600 chr3A 681521905 681526740 4835 False 2596.000000 3851 85.735000 1010 6180 2 chr3A.!!$F3 5170
8 TraesCS3D01G430600 chr3A 681650588 681656144 5556 False 1932.000000 4024 89.063667 886 6179 3 chr3A.!!$F5 5293
9 TraesCS3D01G430600 chr3A 681661445 681666669 5224 False 1887.333333 3880 86.236667 1010 6828 3 chr3A.!!$F6 5818
10 TraesCS3D01G430600 chr3A 681463570 681472916 9346 False 1101.462500 3904 87.851250 303 6837 8 chr3A.!!$F2 6534
11 TraesCS3D01G430600 chr3A 681640369 681641814 1445 False 868.500000 1168 88.289500 5268 6837 2 chr3A.!!$F4 1569
12 TraesCS3D01G430600 chr3B 721037275 721049654 12379 False 2767.750000 4026 87.157250 1011 6269 4 chr3B.!!$F2 5258
13 TraesCS3D01G430600 chr3B 720986369 720993741 7372 False 1900.250000 4202 88.921250 307 6831 4 chr3B.!!$F1 6524
14 TraesCS3D01G430600 chr2D 528322652 528325942 3290 False 3400.000000 3400 85.578000 2832 6120 1 chr2D.!!$F1 3288
15 TraesCS3D01G430600 chr1A 551631800 551635623 3823 True 1605.500000 2891 80.899000 1817 6171 2 chr1A.!!$R2 4354
16 TraesCS3D01G430600 chr1D 460146856 460150163 3307 True 654.500000 1155 82.210000 2785 6078 2 chr1D.!!$R1 3293
17 TraesCS3D01G430600 chr1B 632013707 632016992 3285 True 629.000000 1099 82.405000 2786 6057 2 chr1B.!!$R1 3271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 234 0.035056 CTCGGTCTCCAAAATGCCCT 60.035 55.0 0.0 0.0 0.00 5.19 F
874 890 0.039074 CGTTGCGTGAGAGAGAAGGT 60.039 55.0 0.0 0.0 0.00 3.50 F
2556 3511 0.036294 GGGAGAGGAGAAACAACCGG 60.036 60.0 0.0 0.0 0.00 5.28 F
2798 4235 0.856982 GGAGGAGGAGGAGATGAGGA 59.143 60.0 0.0 0.0 0.00 3.71 F
4141 5736 0.746659 AAGGTTGTCAGTGCTTTGGC 59.253 50.0 0.0 0.0 39.26 4.52 F
4813 6453 0.107116 TGCCCAAGTTACGGTGTGTT 60.107 50.0 0.0 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 2036 0.394899 CTTGCTCCTGGGGATTGGAC 60.395 60.000 0.00 0.0 0.00 4.02 R
2796 4233 0.178935 CCTCCTCCTCCTCATCCTCC 60.179 65.000 0.00 0.0 0.00 4.30 R
4141 5736 1.447314 GTACCGCTGGTTCTTCCCG 60.447 63.158 5.57 0.0 37.09 5.14 R
4288 5883 2.162208 CGCTGTTGCATGTTGAGGTATT 59.838 45.455 0.00 0.0 39.64 1.89 R
5338 14141 0.442699 GAAGTTTGTCGATGCCGGAC 59.557 55.000 5.05 0.0 36.24 4.79 R
6355 16725 0.036671 GTCGAGGTTTTGATCCGGGT 60.037 55.000 0.00 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.635417 AGACAAATCTGAGGCTTTTTAGC 57.365 39.130 0.00 0.00 32.29 3.09
24 25 5.072741 AGACAAATCTGAGGCTTTTTAGCA 58.927 37.500 0.00 0.00 32.29 3.49
25 26 5.713861 AGACAAATCTGAGGCTTTTTAGCAT 59.286 36.000 0.00 0.00 32.29 3.79
26 27 6.886459 AGACAAATCTGAGGCTTTTTAGCATA 59.114 34.615 0.00 0.00 32.29 3.14
27 28 7.066766 AGACAAATCTGAGGCTTTTTAGCATAG 59.933 37.037 0.00 0.00 32.29 2.23
28 29 6.096001 ACAAATCTGAGGCTTTTTAGCATAGG 59.904 38.462 0.00 0.00 36.33 2.57
29 30 4.844349 TCTGAGGCTTTTTAGCATAGGT 57.156 40.909 0.00 0.00 36.33 3.08
30 31 5.950544 TCTGAGGCTTTTTAGCATAGGTA 57.049 39.130 0.00 0.00 36.33 3.08
31 32 5.671493 TCTGAGGCTTTTTAGCATAGGTAC 58.329 41.667 0.00 0.00 36.33 3.34
32 33 5.425539 TCTGAGGCTTTTTAGCATAGGTACT 59.574 40.000 0.00 0.00 38.61 2.73
33 34 5.428253 TGAGGCTTTTTAGCATAGGTACTG 58.572 41.667 0.00 0.00 36.73 2.74
34 35 5.045869 TGAGGCTTTTTAGCATAGGTACTGT 60.046 40.000 0.00 0.00 36.73 3.55
35 36 5.816682 AGGCTTTTTAGCATAGGTACTGTT 58.183 37.500 0.00 0.00 36.73 3.16
36 37 5.880887 AGGCTTTTTAGCATAGGTACTGTTC 59.119 40.000 0.00 0.00 36.73 3.18
37 38 5.646360 GGCTTTTTAGCATAGGTACTGTTCA 59.354 40.000 0.00 0.00 36.73 3.18
38 39 6.318900 GGCTTTTTAGCATAGGTACTGTTCAT 59.681 38.462 0.00 0.00 36.73 2.57
39 40 7.410485 GCTTTTTAGCATAGGTACTGTTCATC 58.590 38.462 0.00 0.00 35.55 2.92
40 41 7.281100 GCTTTTTAGCATAGGTACTGTTCATCT 59.719 37.037 0.00 0.00 35.55 2.90
41 42 9.167311 CTTTTTAGCATAGGTACTGTTCATCTT 57.833 33.333 0.00 0.00 41.52 2.40
42 43 9.515226 TTTTTAGCATAGGTACTGTTCATCTTT 57.485 29.630 0.00 0.00 41.52 2.52
46 47 8.723942 AGCATAGGTACTGTTCATCTTTAAAG 57.276 34.615 9.04 9.04 41.52 1.85
47 48 8.322091 AGCATAGGTACTGTTCATCTTTAAAGT 58.678 33.333 14.74 0.22 41.52 2.66
48 49 8.604890 GCATAGGTACTGTTCATCTTTAAAGTC 58.395 37.037 14.74 3.45 41.52 3.01
49 50 9.877178 CATAGGTACTGTTCATCTTTAAAGTCT 57.123 33.333 14.74 1.57 41.52 3.24
52 53 9.877178 AGGTACTGTTCATCTTTAAAGTCTATG 57.123 33.333 14.74 11.19 37.18 2.23
53 54 9.871238 GGTACTGTTCATCTTTAAAGTCTATGA 57.129 33.333 14.74 13.14 0.00 2.15
90 91 3.764885 GCAGTTCGCAATTCAAGGTAT 57.235 42.857 0.00 0.00 41.79 2.73
91 92 4.096732 GCAGTTCGCAATTCAAGGTATT 57.903 40.909 0.00 0.00 41.79 1.89
92 93 4.485163 GCAGTTCGCAATTCAAGGTATTT 58.515 39.130 0.00 0.00 41.79 1.40
93 94 4.558860 GCAGTTCGCAATTCAAGGTATTTC 59.441 41.667 0.00 0.00 41.79 2.17
94 95 5.698832 CAGTTCGCAATTCAAGGTATTTCA 58.301 37.500 0.00 0.00 0.00 2.69
95 96 6.324819 CAGTTCGCAATTCAAGGTATTTCAT 58.675 36.000 0.00 0.00 0.00 2.57
96 97 6.470235 CAGTTCGCAATTCAAGGTATTTCATC 59.530 38.462 0.00 0.00 0.00 2.92
97 98 5.499139 TCGCAATTCAAGGTATTTCATCC 57.501 39.130 0.00 0.00 0.00 3.51
98 99 5.192927 TCGCAATTCAAGGTATTTCATCCT 58.807 37.500 0.00 0.00 35.34 3.24
99 100 5.066375 TCGCAATTCAAGGTATTTCATCCTG 59.934 40.000 0.00 0.00 33.97 3.86
100 101 5.066375 CGCAATTCAAGGTATTTCATCCTGA 59.934 40.000 0.00 0.00 33.97 3.86
101 102 6.404623 CGCAATTCAAGGTATTTCATCCTGAA 60.405 38.462 0.00 0.00 34.03 3.02
116 117 9.474920 TTTCATCCTGAAATTTTTCACACATAC 57.525 29.630 1.66 0.00 41.02 2.39
117 118 8.175925 TCATCCTGAAATTTTTCACACATACA 57.824 30.769 1.66 0.00 41.88 2.29
118 119 8.081633 TCATCCTGAAATTTTTCACACATACAC 58.918 33.333 1.66 0.00 41.88 2.90
119 120 7.581213 TCCTGAAATTTTTCACACATACACT 57.419 32.000 1.66 0.00 41.88 3.55
120 121 8.006298 TCCTGAAATTTTTCACACATACACTT 57.994 30.769 1.66 0.00 41.88 3.16
121 122 8.474025 TCCTGAAATTTTTCACACATACACTTT 58.526 29.630 1.66 0.00 41.88 2.66
122 123 9.743057 CCTGAAATTTTTCACACATACACTTTA 57.257 29.630 1.66 0.00 41.88 1.85
127 128 9.691362 AATTTTTCACACATACACTTTACATCC 57.309 29.630 0.00 0.00 0.00 3.51
128 129 8.458573 TTTTTCACACATACACTTTACATCCT 57.541 30.769 0.00 0.00 0.00 3.24
129 130 8.458573 TTTTCACACATACACTTTACATCCTT 57.541 30.769 0.00 0.00 0.00 3.36
130 131 7.433708 TTCACACATACACTTTACATCCTTG 57.566 36.000 0.00 0.00 0.00 3.61
131 132 5.411361 TCACACATACACTTTACATCCTTGC 59.589 40.000 0.00 0.00 0.00 4.01
132 133 5.181056 CACACATACACTTTACATCCTTGCA 59.819 40.000 0.00 0.00 0.00 4.08
133 134 5.945784 ACACATACACTTTACATCCTTGCAT 59.054 36.000 0.00 0.00 0.00 3.96
134 135 7.065683 CACACATACACTTTACATCCTTGCATA 59.934 37.037 0.00 0.00 0.00 3.14
135 136 7.065803 ACACATACACTTTACATCCTTGCATAC 59.934 37.037 0.00 0.00 0.00 2.39
136 137 7.065683 CACATACACTTTACATCCTTGCATACA 59.934 37.037 0.00 0.00 0.00 2.29
137 138 7.775093 ACATACACTTTACATCCTTGCATACAT 59.225 33.333 0.00 0.00 0.00 2.29
138 139 6.441093 ACACTTTACATCCTTGCATACATG 57.559 37.500 0.00 0.00 0.00 3.21
139 140 5.945784 ACACTTTACATCCTTGCATACATGT 59.054 36.000 2.69 2.69 33.95 3.21
140 141 6.127925 ACACTTTACATCCTTGCATACATGTG 60.128 38.462 9.11 0.00 31.83 3.21
141 142 5.945784 ACTTTACATCCTTGCATACATGTGT 59.054 36.000 9.11 0.00 31.83 3.72
142 143 7.065683 CACTTTACATCCTTGCATACATGTGTA 59.934 37.037 9.11 0.00 31.83 2.90
143 144 7.609918 ACTTTACATCCTTGCATACATGTGTAA 59.390 33.333 9.11 1.48 33.76 2.41
144 145 8.518430 TTTACATCCTTGCATACATGTGTAAT 57.482 30.769 9.11 0.00 32.76 1.89
145 146 8.518430 TTACATCCTTGCATACATGTGTAATT 57.482 30.769 9.11 0.00 33.76 1.40
146 147 7.408756 ACATCCTTGCATACATGTGTAATTT 57.591 32.000 9.11 0.00 33.76 1.82
147 148 7.839907 ACATCCTTGCATACATGTGTAATTTT 58.160 30.769 9.11 0.00 33.76 1.82
148 149 8.313292 ACATCCTTGCATACATGTGTAATTTTT 58.687 29.630 9.11 0.00 33.76 1.94
207 208 6.521162 TGAATTTTTCAAAGTAAAGGGCTCC 58.479 36.000 0.00 0.00 36.59 4.70
208 209 6.098982 TGAATTTTTCAAAGTAAAGGGCTCCA 59.901 34.615 0.00 0.00 36.59 3.86
209 210 6.686484 ATTTTTCAAAGTAAAGGGCTCCAT 57.314 33.333 0.00 0.00 0.00 3.41
210 211 5.467035 TTTTCAAAGTAAAGGGCTCCATG 57.533 39.130 0.00 0.00 0.00 3.66
211 212 3.085952 TCAAAGTAAAGGGCTCCATGG 57.914 47.619 4.97 4.97 0.00 3.66
212 213 2.647299 TCAAAGTAAAGGGCTCCATGGA 59.353 45.455 15.27 15.27 0.00 3.41
213 214 3.019564 CAAAGTAAAGGGCTCCATGGAG 58.980 50.000 33.73 33.73 44.56 3.86
221 222 3.947173 CTCCATGGAGCTCGGTCT 58.053 61.111 28.45 0.00 35.31 3.85
222 223 1.739049 CTCCATGGAGCTCGGTCTC 59.261 63.158 28.45 0.00 35.31 3.36
230 231 0.729690 GAGCTCGGTCTCCAAAATGC 59.270 55.000 0.00 0.00 0.00 3.56
231 232 0.678048 AGCTCGGTCTCCAAAATGCC 60.678 55.000 0.00 0.00 0.00 4.40
232 233 1.657751 GCTCGGTCTCCAAAATGCCC 61.658 60.000 0.00 0.00 0.00 5.36
233 234 0.035056 CTCGGTCTCCAAAATGCCCT 60.035 55.000 0.00 0.00 0.00 5.19
234 235 1.209504 CTCGGTCTCCAAAATGCCCTA 59.790 52.381 0.00 0.00 0.00 3.53
235 236 1.065709 TCGGTCTCCAAAATGCCCTAC 60.066 52.381 0.00 0.00 0.00 3.18
236 237 1.065418 CGGTCTCCAAAATGCCCTACT 60.065 52.381 0.00 0.00 0.00 2.57
237 238 2.644676 GGTCTCCAAAATGCCCTACTC 58.355 52.381 0.00 0.00 0.00 2.59
238 239 2.644676 GTCTCCAAAATGCCCTACTCC 58.355 52.381 0.00 0.00 0.00 3.85
239 240 1.564348 TCTCCAAAATGCCCTACTCCC 59.436 52.381 0.00 0.00 0.00 4.30
240 241 1.284785 CTCCAAAATGCCCTACTCCCA 59.715 52.381 0.00 0.00 0.00 4.37
241 242 1.005450 TCCAAAATGCCCTACTCCCAC 59.995 52.381 0.00 0.00 0.00 4.61
242 243 1.272425 CCAAAATGCCCTACTCCCACA 60.272 52.381 0.00 0.00 0.00 4.17
243 244 1.818674 CAAAATGCCCTACTCCCACAC 59.181 52.381 0.00 0.00 0.00 3.82
244 245 1.072266 AAATGCCCTACTCCCACACA 58.928 50.000 0.00 0.00 0.00 3.72
245 246 1.072266 AATGCCCTACTCCCACACAA 58.928 50.000 0.00 0.00 0.00 3.33
246 247 0.620556 ATGCCCTACTCCCACACAAG 59.379 55.000 0.00 0.00 0.00 3.16
247 248 1.377333 GCCCTACTCCCACACAAGC 60.377 63.158 0.00 0.00 0.00 4.01
248 249 1.079127 CCCTACTCCCACACAAGCG 60.079 63.158 0.00 0.00 0.00 4.68
249 250 1.541310 CCCTACTCCCACACAAGCGA 61.541 60.000 0.00 0.00 0.00 4.93
250 251 0.320374 CCTACTCCCACACAAGCGAA 59.680 55.000 0.00 0.00 0.00 4.70
251 252 1.270625 CCTACTCCCACACAAGCGAAA 60.271 52.381 0.00 0.00 0.00 3.46
252 253 2.489971 CTACTCCCACACAAGCGAAAA 58.510 47.619 0.00 0.00 0.00 2.29
253 254 1.981256 ACTCCCACACAAGCGAAAAT 58.019 45.000 0.00 0.00 0.00 1.82
254 255 1.608590 ACTCCCACACAAGCGAAAATG 59.391 47.619 0.00 0.00 0.00 2.32
255 256 0.313672 TCCCACACAAGCGAAAATGC 59.686 50.000 0.00 0.00 0.00 3.56
257 258 1.539388 CCCACACAAGCGAAAATGCTA 59.461 47.619 0.00 0.00 46.60 3.49
258 259 2.584791 CCACACAAGCGAAAATGCTAC 58.415 47.619 0.00 0.00 46.60 3.58
259 260 2.226437 CCACACAAGCGAAAATGCTACT 59.774 45.455 0.00 0.00 46.60 2.57
260 261 3.304659 CCACACAAGCGAAAATGCTACTT 60.305 43.478 0.00 0.00 46.60 2.24
261 262 4.083537 CCACACAAGCGAAAATGCTACTTA 60.084 41.667 0.00 0.00 46.60 2.24
262 263 5.082059 CACACAAGCGAAAATGCTACTTAG 58.918 41.667 0.00 0.00 46.60 2.18
263 264 4.091424 CACAAGCGAAAATGCTACTTAGC 58.909 43.478 0.98 0.98 46.60 3.09
273 274 2.981859 GCTACTTAGCCAGGCAGTAA 57.018 50.000 15.80 3.41 43.39 2.24
274 275 3.477210 GCTACTTAGCCAGGCAGTAAT 57.523 47.619 15.80 0.00 43.39 1.89
275 276 3.809905 GCTACTTAGCCAGGCAGTAATT 58.190 45.455 15.80 1.38 43.39 1.40
276 277 4.200092 GCTACTTAGCCAGGCAGTAATTT 58.800 43.478 15.80 0.00 43.39 1.82
277 278 4.273724 GCTACTTAGCCAGGCAGTAATTTC 59.726 45.833 15.80 0.28 43.39 2.17
278 279 4.301072 ACTTAGCCAGGCAGTAATTTCA 57.699 40.909 15.80 0.00 0.00 2.69
279 280 4.662278 ACTTAGCCAGGCAGTAATTTCAA 58.338 39.130 15.80 0.00 0.00 2.69
280 281 5.264395 ACTTAGCCAGGCAGTAATTTCAAT 58.736 37.500 15.80 0.00 0.00 2.57
281 282 5.126061 ACTTAGCCAGGCAGTAATTTCAATG 59.874 40.000 15.80 0.00 0.00 2.82
282 283 3.434309 AGCCAGGCAGTAATTTCAATGT 58.566 40.909 15.80 0.00 0.00 2.71
283 284 3.834231 AGCCAGGCAGTAATTTCAATGTT 59.166 39.130 15.80 0.00 0.00 2.71
284 285 5.016173 AGCCAGGCAGTAATTTCAATGTTA 58.984 37.500 15.80 0.00 0.00 2.41
285 286 5.126061 AGCCAGGCAGTAATTTCAATGTTAG 59.874 40.000 15.80 0.00 0.00 2.34
286 287 5.679638 GCCAGGCAGTAATTTCAATGTTAGG 60.680 44.000 6.55 0.00 0.00 2.69
287 288 5.343249 CAGGCAGTAATTTCAATGTTAGGC 58.657 41.667 0.00 0.00 0.00 3.93
288 289 5.126061 CAGGCAGTAATTTCAATGTTAGGCT 59.874 40.000 0.00 0.00 0.00 4.58
289 290 5.716703 AGGCAGTAATTTCAATGTTAGGCTT 59.283 36.000 0.00 0.00 0.00 4.35
290 291 5.807011 GGCAGTAATTTCAATGTTAGGCTTG 59.193 40.000 0.00 0.00 0.00 4.01
291 292 6.350110 GGCAGTAATTTCAATGTTAGGCTTGA 60.350 38.462 0.00 0.00 0.00 3.02
292 293 6.749118 GCAGTAATTTCAATGTTAGGCTTGAG 59.251 38.462 0.00 0.00 33.25 3.02
293 294 7.362056 GCAGTAATTTCAATGTTAGGCTTGAGA 60.362 37.037 0.00 0.00 33.25 3.27
294 295 8.514594 CAGTAATTTCAATGTTAGGCTTGAGAA 58.485 33.333 0.00 0.00 33.25 2.87
295 296 9.077885 AGTAATTTCAATGTTAGGCTTGAGAAA 57.922 29.630 0.00 0.00 33.25 2.52
296 297 9.860898 GTAATTTCAATGTTAGGCTTGAGAAAT 57.139 29.630 0.00 0.00 36.38 2.17
297 298 8.992835 AATTTCAATGTTAGGCTTGAGAAATC 57.007 30.769 0.00 0.00 34.46 2.17
298 299 7.765695 TTTCAATGTTAGGCTTGAGAAATCT 57.234 32.000 0.00 0.00 33.25 2.40
299 300 8.862325 TTTCAATGTTAGGCTTGAGAAATCTA 57.138 30.769 0.00 0.00 33.25 1.98
300 301 8.862325 TTCAATGTTAGGCTTGAGAAATCTAA 57.138 30.769 0.00 0.00 33.25 2.10
301 302 8.268850 TCAATGTTAGGCTTGAGAAATCTAAC 57.731 34.615 0.00 0.00 39.80 2.34
302 303 6.910536 ATGTTAGGCTTGAGAAATCTAACG 57.089 37.500 0.00 0.00 41.29 3.18
303 304 5.790593 TGTTAGGCTTGAGAAATCTAACGT 58.209 37.500 0.00 0.00 41.29 3.99
304 305 6.228258 TGTTAGGCTTGAGAAATCTAACGTT 58.772 36.000 5.88 5.88 41.29 3.99
305 306 6.367969 TGTTAGGCTTGAGAAATCTAACGTTC 59.632 38.462 2.82 0.00 41.29 3.95
318 319 4.699637 TCTAACGTTCTTTTGAGGAAGCA 58.300 39.130 2.82 0.00 0.00 3.91
338 339 0.696501 AACCAAACAGGCCCTACGAT 59.303 50.000 0.00 0.00 43.14 3.73
374 383 1.693062 CTCTAGACCATCCAGCATGCT 59.307 52.381 16.30 16.30 31.97 3.79
405 414 2.227089 CTCTGTCCCACCGCCTACAC 62.227 65.000 0.00 0.00 0.00 2.90
463 472 2.838736 ACACAAAGTCAGAAGCACGAT 58.161 42.857 0.00 0.00 0.00 3.73
540 555 4.428615 GCCGTAAGCACCAATAAGAAAA 57.571 40.909 0.00 0.00 42.97 2.29
655 671 6.862711 AAATGATGTATGCAGAGATGAGTG 57.137 37.500 0.00 0.00 0.00 3.51
662 678 8.774890 ATGTATGCAGAGATGAGTGAATAATC 57.225 34.615 0.00 0.00 0.00 1.75
746 762 1.609208 GTGGATATGGATGCCACCAC 58.391 55.000 8.42 8.42 44.86 4.16
747 763 1.133823 GTGGATATGGATGCCACCACA 60.134 52.381 15.77 0.00 43.42 4.17
869 885 1.372251 AGTGCGTTGCGTGAGAGAG 60.372 57.895 0.00 0.00 0.00 3.20
870 886 1.371758 GTGCGTTGCGTGAGAGAGA 60.372 57.895 0.00 0.00 0.00 3.10
871 887 0.939577 GTGCGTTGCGTGAGAGAGAA 60.940 55.000 0.00 0.00 0.00 2.87
872 888 0.664466 TGCGTTGCGTGAGAGAGAAG 60.664 55.000 0.00 0.00 0.00 2.85
873 889 1.347817 GCGTTGCGTGAGAGAGAAGG 61.348 60.000 0.00 0.00 0.00 3.46
874 890 0.039074 CGTTGCGTGAGAGAGAAGGT 60.039 55.000 0.00 0.00 0.00 3.50
875 891 1.423395 GTTGCGTGAGAGAGAAGGTG 58.577 55.000 0.00 0.00 0.00 4.00
876 892 0.319900 TTGCGTGAGAGAGAAGGTGC 60.320 55.000 0.00 0.00 0.00 5.01
877 893 1.290324 GCGTGAGAGAGAAGGTGCA 59.710 57.895 0.00 0.00 0.00 4.57
878 894 1.011451 GCGTGAGAGAGAAGGTGCAC 61.011 60.000 8.80 8.80 0.00 4.57
879 895 0.315251 CGTGAGAGAGAAGGTGCACA 59.685 55.000 20.43 0.00 0.00 4.57
880 896 1.269778 CGTGAGAGAGAAGGTGCACAA 60.270 52.381 20.43 0.00 0.00 3.33
883 899 0.320247 AGAGAGAAGGTGCACAAGCG 60.320 55.000 20.43 0.00 46.23 4.68
884 900 0.601311 GAGAGAAGGTGCACAAGCGT 60.601 55.000 20.43 0.00 46.23 5.07
946 965 1.286501 GCGCGAGAACAACATATCCA 58.713 50.000 12.10 0.00 0.00 3.41
950 969 3.555547 CGCGAGAACAACATATCCAATGA 59.444 43.478 0.00 0.00 0.00 2.57
953 972 4.024556 CGAGAACAACATATCCAATGAGGC 60.025 45.833 0.00 0.00 37.29 4.70
955 974 3.558931 ACAACATATCCAATGAGGCGA 57.441 42.857 0.00 0.00 37.29 5.54
972 991 4.129737 AGTCGTCGCCATCACCCG 62.130 66.667 0.00 0.00 0.00 5.28
1026 1061 2.224209 GGAGACCAGTTCGACCAGAAAA 60.224 50.000 0.00 0.00 41.10 2.29
1321 1362 2.180308 CCTCTACCTCTACAGGGGGAAT 59.820 54.545 0.00 0.00 45.53 3.01
1594 1673 2.557056 TGACGAAGAAGAAGACGGTGAT 59.443 45.455 0.00 0.00 0.00 3.06
1815 1912 2.861462 TGGCTTTTGAGTCAAAACCG 57.139 45.000 23.91 17.16 38.24 4.44
1936 2042 2.232208 GCTTAAGCTTGCCAAGTCCAAT 59.768 45.455 20.38 0.00 38.21 3.16
2137 2267 4.083862 GAGAAGGGCGACGGGCTT 62.084 66.667 0.00 0.00 42.94 4.35
2171 2301 3.228188 AGCTTCAGGGTGATTTTGACA 57.772 42.857 0.00 0.00 0.00 3.58
2233 2375 4.024556 ACAGCGTCTCAACAAGATCAAAAG 60.025 41.667 0.00 0.00 36.11 2.27
2264 2407 6.683974 ACAAAGACATGCATAGATTACCAC 57.316 37.500 0.00 0.00 0.00 4.16
2299 2451 3.681897 ACAACATCATCGTCAAGAAGCTC 59.318 43.478 0.00 0.00 0.00 4.09
2345 2503 6.712547 GGAAAAGGACAAGAAGATTGAAGAGA 59.287 38.462 0.00 0.00 0.00 3.10
2346 2504 7.094848 GGAAAAGGACAAGAAGATTGAAGAGAG 60.095 40.741 0.00 0.00 0.00 3.20
2360 2518 1.935799 AGAGAGAGAAGCTGCCAAGA 58.064 50.000 0.00 0.00 0.00 3.02
2427 2858 3.639561 GAGGGAGGAGGAGAAGTAACATC 59.360 52.174 0.00 0.00 0.00 3.06
2489 3420 1.719378 GGGAGGAGGATATGGAGGAGA 59.281 57.143 0.00 0.00 0.00 3.71
2502 3457 2.046447 TGGAGGAGAGGGAAGGAGAAAT 59.954 50.000 0.00 0.00 0.00 2.17
2504 3459 4.265307 TGGAGGAGAGGGAAGGAGAAATAA 60.265 45.833 0.00 0.00 0.00 1.40
2507 3462 3.780850 GGAGAGGGAAGGAGAAATAACCA 59.219 47.826 0.00 0.00 0.00 3.67
2508 3463 4.413851 GGAGAGGGAAGGAGAAATAACCAT 59.586 45.833 0.00 0.00 0.00 3.55
2509 3464 5.607171 GGAGAGGGAAGGAGAAATAACCATA 59.393 44.000 0.00 0.00 0.00 2.74
2510 3465 6.464607 GGAGAGGGAAGGAGAAATAACCATAC 60.465 46.154 0.00 0.00 0.00 2.39
2511 3466 5.970640 AGAGGGAAGGAGAAATAACCATACA 59.029 40.000 0.00 0.00 0.00 2.29
2512 3467 6.621514 AGAGGGAAGGAGAAATAACCATACAT 59.378 38.462 0.00 0.00 0.00 2.29
2513 3468 7.794683 AGAGGGAAGGAGAAATAACCATACATA 59.205 37.037 0.00 0.00 0.00 2.29
2514 3469 7.978925 AGGGAAGGAGAAATAACCATACATAG 58.021 38.462 0.00 0.00 0.00 2.23
2515 3470 7.017651 AGGGAAGGAGAAATAACCATACATAGG 59.982 40.741 0.00 0.00 0.00 2.57
2517 3472 7.017254 GGAAGGAGAAATAACCATACATAGGGA 59.983 40.741 0.00 0.00 0.00 4.20
2518 3473 7.317722 AGGAGAAATAACCATACATAGGGAC 57.682 40.000 0.00 0.00 0.00 4.46
2520 3475 6.014840 GGAGAAATAACCATACATAGGGACGA 60.015 42.308 0.00 0.00 0.00 4.20
2522 3477 7.442656 AGAAATAACCATACATAGGGACGAAG 58.557 38.462 0.00 0.00 0.00 3.79
2523 3478 6.989155 AATAACCATACATAGGGACGAAGA 57.011 37.500 0.00 0.00 0.00 2.87
2533 3488 0.537653 GGGACGAAGAGGAAGAAGGG 59.462 60.000 0.00 0.00 0.00 3.95
2536 3491 1.222113 CGAAGAGGAAGAAGGGGGC 59.778 63.158 0.00 0.00 0.00 5.80
2539 3494 3.798511 GAGGAAGAAGGGGGCGGG 61.799 72.222 0.00 0.00 0.00 6.13
2540 3495 4.348495 AGGAAGAAGGGGGCGGGA 62.348 66.667 0.00 0.00 0.00 5.14
2556 3511 0.036294 GGGAGAGGAGAAACAACCGG 60.036 60.000 0.00 0.00 0.00 5.28
2568 3804 1.279025 ACAACCGGGCATATGGAGGT 61.279 55.000 6.32 0.00 36.66 3.85
2593 3829 2.237392 AGAAGGAGAAGTGGCCATACAC 59.763 50.000 9.72 0.00 41.63 2.90
2608 3940 3.772025 CCATACACAGGGAGGAGGATATC 59.228 52.174 0.00 0.00 0.00 1.63
2652 4038 3.823061 GCACATAGGGAGGAGGATATGGA 60.823 52.174 0.00 0.00 31.34 3.41
2657 4043 2.113414 AGGGAGGAGGATATGGAAGGAG 59.887 54.545 0.00 0.00 0.00 3.69
2667 4053 6.153924 AGGATATGGAAGGAGAAGTAACCAT 58.846 40.000 0.00 0.00 40.50 3.55
2669 4055 7.235812 AGGATATGGAAGGAGAAGTAACCATAC 59.764 40.741 0.00 0.00 41.18 2.39
2671 4057 5.416271 TGGAAGGAGAAGTAACCATACAC 57.584 43.478 0.00 0.00 34.29 2.90
2673 4059 5.046591 TGGAAGGAGAAGTAACCATACACAG 60.047 44.000 0.00 0.00 34.29 3.66
2693 4124 0.996762 GGAGGAGGAGGAGGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
2734 4171 9.962809 AAAGAAGAAGAAGAAGAAGATGATGAT 57.037 29.630 0.00 0.00 0.00 2.45
2735 4172 8.951787 AGAAGAAGAAGAAGAAGATGATGATG 57.048 34.615 0.00 0.00 0.00 3.07
2736 4173 8.760735 AGAAGAAGAAGAAGAAGATGATGATGA 58.239 33.333 0.00 0.00 0.00 2.92
2737 4174 9.550406 GAAGAAGAAGAAGAAGATGATGATGAT 57.450 33.333 0.00 0.00 0.00 2.45
2738 4175 8.896320 AGAAGAAGAAGAAGATGATGATGATG 57.104 34.615 0.00 0.00 0.00 3.07
2739 4176 8.706521 AGAAGAAGAAGAAGATGATGATGATGA 58.293 33.333 0.00 0.00 0.00 2.92
2740 4177 9.496873 GAAGAAGAAGAAGATGATGATGATGAT 57.503 33.333 0.00 0.00 0.00 2.45
2741 4178 8.840833 AGAAGAAGAAGATGATGATGATGATG 57.159 34.615 0.00 0.00 0.00 3.07
2742 4179 8.652290 AGAAGAAGAAGATGATGATGATGATGA 58.348 33.333 0.00 0.00 0.00 2.92
2743 4180 9.443323 GAAGAAGAAGATGATGATGATGATGAT 57.557 33.333 0.00 0.00 0.00 2.45
2744 4181 8.785329 AGAAGAAGATGATGATGATGATGATG 57.215 34.615 0.00 0.00 0.00 3.07
2745 4182 8.598041 AGAAGAAGATGATGATGATGATGATGA 58.402 33.333 0.00 0.00 0.00 2.92
2746 4183 8.785329 AAGAAGATGATGATGATGATGATGAG 57.215 34.615 0.00 0.00 0.00 2.90
2747 4184 7.334858 AGAAGATGATGATGATGATGATGAGG 58.665 38.462 0.00 0.00 0.00 3.86
2748 4185 6.875972 AGATGATGATGATGATGATGAGGA 57.124 37.500 0.00 0.00 0.00 3.71
2749 4186 7.444703 AGATGATGATGATGATGATGAGGAT 57.555 36.000 0.00 0.00 0.00 3.24
2750 4187 7.278875 AGATGATGATGATGATGATGAGGATG 58.721 38.462 0.00 0.00 0.00 3.51
2751 4188 6.620877 TGATGATGATGATGATGAGGATGA 57.379 37.500 0.00 0.00 0.00 2.92
2752 4189 7.200434 TGATGATGATGATGATGAGGATGAT 57.800 36.000 0.00 0.00 0.00 2.45
2753 4190 7.050377 TGATGATGATGATGATGAGGATGATG 58.950 38.462 0.00 0.00 0.00 3.07
2754 4191 6.620877 TGATGATGATGATGAGGATGATGA 57.379 37.500 0.00 0.00 0.00 2.92
2755 4192 7.200434 TGATGATGATGATGAGGATGATGAT 57.800 36.000 0.00 0.00 0.00 2.45
2756 4193 7.050377 TGATGATGATGATGAGGATGATGATG 58.950 38.462 0.00 0.00 0.00 3.07
2757 4194 6.620877 TGATGATGATGAGGATGATGATGA 57.379 37.500 0.00 0.00 0.00 2.92
2758 4195 7.200434 TGATGATGATGAGGATGATGATGAT 57.800 36.000 0.00 0.00 0.00 2.45
2759 4196 8.319057 TGATGATGATGAGGATGATGATGATA 57.681 34.615 0.00 0.00 0.00 2.15
2760 4197 8.768397 TGATGATGATGAGGATGATGATGATAA 58.232 33.333 0.00 0.00 0.00 1.75
2761 4198 9.785982 GATGATGATGAGGATGATGATGATAAT 57.214 33.333 0.00 0.00 0.00 1.28
2762 4199 8.964476 TGATGATGAGGATGATGATGATAATG 57.036 34.615 0.00 0.00 0.00 1.90
2763 4200 8.768397 TGATGATGAGGATGATGATGATAATGA 58.232 33.333 0.00 0.00 0.00 2.57
2764 4201 9.785982 GATGATGAGGATGATGATGATAATGAT 57.214 33.333 0.00 0.00 0.00 2.45
2765 4202 8.964476 TGATGAGGATGATGATGATAATGATG 57.036 34.615 0.00 0.00 0.00 3.07
2766 4203 8.768397 TGATGAGGATGATGATGATAATGATGA 58.232 33.333 0.00 0.00 0.00 2.92
2767 4204 9.785982 GATGAGGATGATGATGATAATGATGAT 57.214 33.333 0.00 0.00 0.00 2.45
2768 4205 8.964476 TGAGGATGATGATGATAATGATGATG 57.036 34.615 0.00 0.00 0.00 3.07
2769 4206 8.768397 TGAGGATGATGATGATAATGATGATGA 58.232 33.333 0.00 0.00 0.00 2.92
2770 4207 9.614792 GAGGATGATGATGATAATGATGATGAA 57.385 33.333 0.00 0.00 0.00 2.57
2771 4208 9.620259 AGGATGATGATGATAATGATGATGAAG 57.380 33.333 0.00 0.00 0.00 3.02
2772 4209 9.614792 GGATGATGATGATAATGATGATGAAGA 57.385 33.333 0.00 0.00 0.00 2.87
2780 4217 9.727859 ATGATAATGATGATGAAGAAGAAGAGG 57.272 33.333 0.00 0.00 0.00 3.69
2781 4218 8.931568 TGATAATGATGATGAAGAAGAAGAGGA 58.068 33.333 0.00 0.00 0.00 3.71
2782 4219 9.426837 GATAATGATGATGAAGAAGAAGAGGAG 57.573 37.037 0.00 0.00 0.00 3.69
2783 4220 5.611128 TGATGATGAAGAAGAAGAGGAGG 57.389 43.478 0.00 0.00 0.00 4.30
2784 4221 5.275630 TGATGATGAAGAAGAAGAGGAGGA 58.724 41.667 0.00 0.00 0.00 3.71
2785 4222 5.363292 TGATGATGAAGAAGAAGAGGAGGAG 59.637 44.000 0.00 0.00 0.00 3.69
2786 4223 4.029520 TGATGAAGAAGAAGAGGAGGAGG 58.970 47.826 0.00 0.00 0.00 4.30
2787 4224 3.835478 TGAAGAAGAAGAGGAGGAGGA 57.165 47.619 0.00 0.00 0.00 3.71
2788 4225 3.707316 TGAAGAAGAAGAGGAGGAGGAG 58.293 50.000 0.00 0.00 0.00 3.69
2789 4226 2.846665 AGAAGAAGAGGAGGAGGAGG 57.153 55.000 0.00 0.00 0.00 4.30
2790 4227 2.293246 AGAAGAAGAGGAGGAGGAGGA 58.707 52.381 0.00 0.00 0.00 3.71
2791 4228 2.244769 AGAAGAAGAGGAGGAGGAGGAG 59.755 54.545 0.00 0.00 0.00 3.69
2792 4229 1.994399 AGAAGAGGAGGAGGAGGAGA 58.006 55.000 0.00 0.00 0.00 3.71
2793 4230 2.513602 AGAAGAGGAGGAGGAGGAGAT 58.486 52.381 0.00 0.00 0.00 2.75
2794 4231 2.177669 AGAAGAGGAGGAGGAGGAGATG 59.822 54.545 0.00 0.00 0.00 2.90
2795 4232 1.919933 AGAGGAGGAGGAGGAGATGA 58.080 55.000 0.00 0.00 0.00 2.92
2796 4233 1.782752 AGAGGAGGAGGAGGAGATGAG 59.217 57.143 0.00 0.00 0.00 2.90
2797 4234 0.859760 AGGAGGAGGAGGAGATGAGG 59.140 60.000 0.00 0.00 0.00 3.86
2798 4235 0.856982 GGAGGAGGAGGAGATGAGGA 59.143 60.000 0.00 0.00 0.00 3.71
2799 4236 1.203050 GGAGGAGGAGGAGATGAGGAG 60.203 61.905 0.00 0.00 0.00 3.69
2800 4237 0.859760 AGGAGGAGGAGATGAGGAGG 59.140 60.000 0.00 0.00 0.00 4.30
2801 4238 0.856982 GGAGGAGGAGATGAGGAGGA 59.143 60.000 0.00 0.00 0.00 3.71
2802 4239 1.432807 GGAGGAGGAGATGAGGAGGAT 59.567 57.143 0.00 0.00 0.00 3.24
2803 4240 2.528564 GAGGAGGAGATGAGGAGGATG 58.471 57.143 0.00 0.00 0.00 3.51
2804 4241 2.109834 GAGGAGGAGATGAGGAGGATGA 59.890 54.545 0.00 0.00 0.00 2.92
2807 4244 2.109834 GAGGAGATGAGGAGGATGAGGA 59.890 54.545 0.00 0.00 0.00 3.71
2810 4247 2.109834 GAGATGAGGAGGATGAGGAGGA 59.890 54.545 0.00 0.00 0.00 3.71
2827 4264 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
3253 4835 1.191535 TCCGGGATAACAGGTGTGAG 58.808 55.000 0.00 0.00 0.00 3.51
3271 4853 2.124411 GAGTGCCCCCTGTTTATCCTA 58.876 52.381 0.00 0.00 0.00 2.94
3400 4982 5.116084 TCCAGCTGGCTAAAGAATATTGT 57.884 39.130 28.91 0.00 34.44 2.71
3403 4985 6.542370 TCCAGCTGGCTAAAGAATATTGTTAC 59.458 38.462 28.91 0.00 34.44 2.50
3409 4991 6.127101 GGCTAAAGAATATTGTTACCCACCT 58.873 40.000 0.00 0.00 0.00 4.00
3466 5054 3.452264 ACCATGATACAGTGCTCAAGCTA 59.548 43.478 3.32 0.00 42.66 3.32
3598 5186 2.595009 CTAACCCCAAGAGGAGCGGC 62.595 65.000 0.00 0.00 38.24 6.53
3610 5198 1.214589 GAGCGGCGAGGAGTTACAA 59.785 57.895 12.98 0.00 0.00 2.41
3619 5207 2.744202 CGAGGAGTTACAAAAGCTGCAT 59.256 45.455 1.02 0.00 0.00 3.96
3721 5312 5.416013 GCCTAAAGAATACAAGTCCTGCTTT 59.584 40.000 0.00 0.00 34.69 3.51
3773 5364 1.276421 AGATCAGTCGGTCAACCTTGG 59.724 52.381 0.00 0.00 0.00 3.61
3886 5478 0.895100 GGTGCCTTGTTCATCCTGCA 60.895 55.000 0.00 0.00 0.00 4.41
4048 5640 1.965754 ATCTCCAACTCCGCAGCTCC 61.966 60.000 0.00 0.00 0.00 4.70
4075 5667 6.721704 AGAATTGATAAATTCTTCCAGGGC 57.278 37.500 11.77 0.00 44.63 5.19
4099 5691 6.629068 GCCTCTCTAAATCATCTCAAGTGTCA 60.629 42.308 0.00 0.00 0.00 3.58
4141 5736 0.746659 AAGGTTGTCAGTGCTTTGGC 59.253 50.000 0.00 0.00 39.26 4.52
4287 5882 2.906354 ACTGGATATCCGACAAACTGC 58.094 47.619 17.04 0.00 39.43 4.40
4288 5883 2.236146 ACTGGATATCCGACAAACTGCA 59.764 45.455 17.04 0.00 39.43 4.41
4309 5904 1.155889 TACCTCAACATGCAACAGCG 58.844 50.000 0.00 0.00 0.00 5.18
4362 5963 4.022068 GCTTTCTGGTCACATTGATCCAAA 60.022 41.667 0.00 0.00 30.93 3.28
4413 6014 6.425114 CCTCATAGGATCGACAAAATGGTAAG 59.575 42.308 0.00 0.00 37.67 2.34
4451 6052 1.073897 GTCAAGGCCCAGCAGAGTT 59.926 57.895 0.00 0.00 0.00 3.01
4624 6249 0.957395 CACCATGCGAGGCAGAGTTT 60.957 55.000 0.00 0.00 43.65 2.66
4654 6294 4.637977 GTCAAGAACCATCCCAAGATTCTC 59.362 45.833 0.00 0.00 0.00 2.87
4705 6345 2.514458 ATGGGCGTCTTCTTCCATTT 57.486 45.000 0.00 0.00 36.69 2.32
4712 6352 5.449177 GGGCGTCTTCTTCCATTTTTCATAG 60.449 44.000 0.00 0.00 0.00 2.23
4813 6453 0.107116 TGCCCAAGTTACGGTGTGTT 60.107 50.000 0.00 0.00 0.00 3.32
5006 13799 9.660180 GTTCTATTTCTGGAGTTGAGTATCTTT 57.340 33.333 0.00 0.00 34.92 2.52
5009 13802 9.311916 CTATTTCTGGAGTTGAGTATCTTTCTG 57.688 37.037 0.00 0.00 34.92 3.02
5041 13834 2.223665 GCTTGAGTTGAACAGCAGCTTT 60.224 45.455 0.00 0.00 38.26 3.51
5102 13904 1.257743 AGCCAAGCTGACTCTTCGTA 58.742 50.000 0.00 0.00 37.57 3.43
5338 14141 3.450096 TCTGGTCATCTTCCACATCTCTG 59.550 47.826 0.00 0.00 0.00 3.35
5507 14388 5.129155 AGGAGATGAAGAAGAGGATGACAAG 59.871 44.000 0.00 0.00 0.00 3.16
5633 14522 6.458751 GCAATCTGTTCTTCTTGTCTGTTGAA 60.459 38.462 0.00 0.00 0.00 2.69
5681 14570 4.084066 TCTGCGTGCATTACAACTTAAGTG 60.084 41.667 9.34 6.22 0.00 3.16
5769 14658 5.273674 TGCTTGGATTTGAATTTGTGTGA 57.726 34.783 0.00 0.00 0.00 3.58
5777 14666 6.986231 GGATTTGAATTTGTGTGACTTTCCTT 59.014 34.615 0.00 0.00 0.00 3.36
5783 14672 9.126151 TGAATTTGTGTGACTTTCCTTTGTATA 57.874 29.630 0.00 0.00 0.00 1.47
5886 14775 9.813446 ATATACAGTGTGATATCAGTATGCATG 57.187 33.333 18.65 9.55 34.76 4.06
5887 14776 4.753610 ACAGTGTGATATCAGTATGCATGC 59.246 41.667 11.82 11.82 34.76 4.06
5899 14788 3.770933 AGTATGCATGCTTTGATTGGGTT 59.229 39.130 20.33 0.00 0.00 4.11
5901 14790 2.250031 TGCATGCTTTGATTGGGTTCT 58.750 42.857 20.33 0.00 0.00 3.01
5909 14798 2.655090 TGATTGGGTTCTGCAACTCA 57.345 45.000 0.00 0.00 41.59 3.41
6037 15632 7.920160 TTATGCAGATTAAGAATGTGTGACA 57.080 32.000 0.00 0.00 34.84 3.58
6150 16494 1.852895 CATTTGGTAGCTCGCGTAGTC 59.147 52.381 5.77 0.00 0.00 2.59
6256 16620 2.416836 CGGTTCTTCGCTTCCTCATGTA 60.417 50.000 0.00 0.00 0.00 2.29
6258 16622 3.371285 GGTTCTTCGCTTCCTCATGTAAC 59.629 47.826 0.00 0.00 0.00 2.50
6276 16640 6.561737 TGTAACAAACCAAATCGAAGCATA 57.438 33.333 0.00 0.00 0.00 3.14
6290 16654 3.492309 CGAAGCATAAGACCTGCAGAGAT 60.492 47.826 17.39 0.00 42.15 2.75
6354 16724 0.790207 CTCGTCACCCAATTGTCACG 59.210 55.000 4.43 6.98 0.00 4.35
6355 16725 0.389757 TCGTCACCCAATTGTCACGA 59.610 50.000 4.43 9.10 34.08 4.35
6357 16727 0.872388 GTCACCCAATTGTCACGACC 59.128 55.000 4.43 0.00 0.00 4.79
6371 16741 0.036671 ACGACCCGGATCAAAACCTC 60.037 55.000 0.73 0.00 0.00 3.85
6373 16743 0.248289 GACCCGGATCAAAACCTCGA 59.752 55.000 0.73 0.00 0.00 4.04
6374 16744 0.036671 ACCCGGATCAAAACCTCGAC 60.037 55.000 0.73 0.00 0.00 4.20
6375 16745 0.036765 CCCGGATCAAAACCTCGACA 60.037 55.000 0.73 0.00 0.00 4.35
6376 16746 1.359848 CCGGATCAAAACCTCGACAG 58.640 55.000 0.00 0.00 0.00 3.51
6377 16747 0.721718 CGGATCAAAACCTCGACAGC 59.278 55.000 0.00 0.00 0.00 4.40
6378 16748 1.087501 GGATCAAAACCTCGACAGCC 58.912 55.000 0.00 0.00 0.00 4.85
6379 16749 1.610624 GGATCAAAACCTCGACAGCCA 60.611 52.381 0.00 0.00 0.00 4.75
6380 16750 2.151202 GATCAAAACCTCGACAGCCAA 58.849 47.619 0.00 0.00 0.00 4.52
6381 16751 2.270352 TCAAAACCTCGACAGCCAAT 57.730 45.000 0.00 0.00 0.00 3.16
6417 16797 2.169352 TGAGAAGTGCTCCATTAGGCTC 59.831 50.000 0.00 0.00 43.26 4.70
6456 16839 5.799213 AGTCATCTATCCGAAAATCCATCC 58.201 41.667 0.00 0.00 0.00 3.51
6616 17005 4.825422 CATAAGACCTGCAGAGACAGAAA 58.175 43.478 17.39 0.00 40.25 2.52
6686 17078 3.132646 AGTCTCTGCTGCTCTAATTCCTG 59.867 47.826 0.00 0.00 0.00 3.86
6696 17088 5.111989 TGCTCTAATTCCTGTTTGAGATCG 58.888 41.667 0.00 0.00 34.33 3.69
6716 17116 1.224592 CAGATCGGAAGGGGTTGGG 59.775 63.158 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.190587 ACCTATGCTAAAAAGCCTCAGATTT 58.809 36.000 0.00 0.00 31.52 2.17
7 8 5.379706 ACCTATGCTAAAAAGCCTCAGAT 57.620 39.130 0.00 0.00 0.00 2.90
9 10 5.525378 CAGTACCTATGCTAAAAAGCCTCAG 59.475 44.000 0.00 0.00 0.00 3.35
10 11 5.045869 ACAGTACCTATGCTAAAAAGCCTCA 60.046 40.000 0.00 0.00 0.00 3.86
15 16 8.723942 AGATGAACAGTACCTATGCTAAAAAG 57.276 34.615 0.00 0.00 0.00 2.27
16 17 9.515226 AAAGATGAACAGTACCTATGCTAAAAA 57.485 29.630 0.00 0.00 0.00 1.94
20 21 9.817809 CTTTAAAGATGAACAGTACCTATGCTA 57.182 33.333 9.77 0.00 0.00 3.49
21 22 8.322091 ACTTTAAAGATGAACAGTACCTATGCT 58.678 33.333 21.92 0.00 0.00 3.79
22 23 8.494016 ACTTTAAAGATGAACAGTACCTATGC 57.506 34.615 21.92 0.00 0.00 3.14
23 24 9.877178 AGACTTTAAAGATGAACAGTACCTATG 57.123 33.333 21.92 0.00 0.00 2.23
26 27 9.877178 CATAGACTTTAAAGATGAACAGTACCT 57.123 33.333 21.92 0.00 0.00 3.08
27 28 9.871238 TCATAGACTTTAAAGATGAACAGTACC 57.129 33.333 21.92 0.00 0.00 3.34
70 71 3.764885 ATACCTTGAATTGCGAACTGC 57.235 42.857 0.00 0.00 46.70 4.40
71 72 5.698832 TGAAATACCTTGAATTGCGAACTG 58.301 37.500 0.00 0.00 0.00 3.16
72 73 5.957842 TGAAATACCTTGAATTGCGAACT 57.042 34.783 0.00 0.00 0.00 3.01
73 74 5.743872 GGATGAAATACCTTGAATTGCGAAC 59.256 40.000 0.00 0.00 0.00 3.95
74 75 5.652014 AGGATGAAATACCTTGAATTGCGAA 59.348 36.000 0.00 0.00 31.95 4.70
75 76 5.066375 CAGGATGAAATACCTTGAATTGCGA 59.934 40.000 0.00 0.00 39.69 5.10
76 77 5.066375 TCAGGATGAAATACCTTGAATTGCG 59.934 40.000 0.00 0.00 45.97 4.85
77 78 6.455360 TCAGGATGAAATACCTTGAATTGC 57.545 37.500 0.00 0.00 45.97 3.56
92 93 8.081633 GTGTATGTGTGAAAAATTTCAGGATGA 58.918 33.333 8.76 0.00 46.80 2.92
93 94 8.084073 AGTGTATGTGTGAAAAATTTCAGGATG 58.916 33.333 8.76 0.00 46.80 3.51
94 95 8.181904 AGTGTATGTGTGAAAAATTTCAGGAT 57.818 30.769 8.76 4.68 46.80 3.24
95 96 7.581213 AGTGTATGTGTGAAAAATTTCAGGA 57.419 32.000 8.76 0.00 46.80 3.86
96 97 8.647143 AAAGTGTATGTGTGAAAAATTTCAGG 57.353 30.769 8.76 0.00 46.80 3.86
101 102 9.691362 GGATGTAAAGTGTATGTGTGAAAAATT 57.309 29.630 0.00 0.00 0.00 1.82
102 103 9.077885 AGGATGTAAAGTGTATGTGTGAAAAAT 57.922 29.630 0.00 0.00 0.00 1.82
103 104 8.458573 AGGATGTAAAGTGTATGTGTGAAAAA 57.541 30.769 0.00 0.00 0.00 1.94
104 105 8.349245 CAAGGATGTAAAGTGTATGTGTGAAAA 58.651 33.333 0.00 0.00 0.00 2.29
105 106 7.521423 GCAAGGATGTAAAGTGTATGTGTGAAA 60.521 37.037 0.00 0.00 0.00 2.69
106 107 6.072728 GCAAGGATGTAAAGTGTATGTGTGAA 60.073 38.462 0.00 0.00 0.00 3.18
107 108 5.411361 GCAAGGATGTAAAGTGTATGTGTGA 59.589 40.000 0.00 0.00 0.00 3.58
108 109 5.181056 TGCAAGGATGTAAAGTGTATGTGTG 59.819 40.000 0.00 0.00 0.00 3.82
109 110 5.312895 TGCAAGGATGTAAAGTGTATGTGT 58.687 37.500 0.00 0.00 0.00 3.72
110 111 5.878332 TGCAAGGATGTAAAGTGTATGTG 57.122 39.130 0.00 0.00 0.00 3.21
111 112 7.109501 TGTATGCAAGGATGTAAAGTGTATGT 58.890 34.615 0.00 0.00 0.00 2.29
112 113 7.552458 TGTATGCAAGGATGTAAAGTGTATG 57.448 36.000 0.00 0.00 0.00 2.39
113 114 7.775093 ACATGTATGCAAGGATGTAAAGTGTAT 59.225 33.333 0.00 0.00 0.00 2.29
114 115 7.065683 CACATGTATGCAAGGATGTAAAGTGTA 59.934 37.037 0.00 0.00 0.00 2.90
115 116 5.945784 ACATGTATGCAAGGATGTAAAGTGT 59.054 36.000 0.00 0.00 0.00 3.55
116 117 6.127925 ACACATGTATGCAAGGATGTAAAGTG 60.128 38.462 0.00 0.00 0.00 3.16
117 118 5.945784 ACACATGTATGCAAGGATGTAAAGT 59.054 36.000 0.00 1.15 0.00 2.66
118 119 6.441093 ACACATGTATGCAAGGATGTAAAG 57.559 37.500 0.00 0.66 0.00 1.85
119 120 7.929941 TTACACATGTATGCAAGGATGTAAA 57.070 32.000 0.00 3.99 30.53 2.01
120 121 8.518430 AATTACACATGTATGCAAGGATGTAA 57.482 30.769 0.00 11.55 36.16 2.41
121 122 8.518430 AAATTACACATGTATGCAAGGATGTA 57.482 30.769 0.00 2.28 0.00 2.29
122 123 7.408756 AAATTACACATGTATGCAAGGATGT 57.591 32.000 0.00 0.00 0.00 3.06
123 124 8.706492 AAAAATTACACATGTATGCAAGGATG 57.294 30.769 0.00 0.00 0.00 3.51
183 184 6.098982 TGGAGCCCTTTACTTTGAAAAATTCA 59.901 34.615 0.00 0.00 38.04 2.57
184 185 6.521162 TGGAGCCCTTTACTTTGAAAAATTC 58.479 36.000 0.00 0.00 0.00 2.17
185 186 6.493189 TGGAGCCCTTTACTTTGAAAAATT 57.507 33.333 0.00 0.00 0.00 1.82
186 187 6.466812 CATGGAGCCCTTTACTTTGAAAAAT 58.533 36.000 0.00 0.00 0.00 1.82
187 188 5.221621 CCATGGAGCCCTTTACTTTGAAAAA 60.222 40.000 5.56 0.00 0.00 1.94
188 189 4.283212 CCATGGAGCCCTTTACTTTGAAAA 59.717 41.667 5.56 0.00 0.00 2.29
189 190 3.831911 CCATGGAGCCCTTTACTTTGAAA 59.168 43.478 5.56 0.00 0.00 2.69
190 191 3.075283 TCCATGGAGCCCTTTACTTTGAA 59.925 43.478 11.44 0.00 0.00 2.69
191 192 2.647299 TCCATGGAGCCCTTTACTTTGA 59.353 45.455 11.44 0.00 0.00 2.69
192 193 3.019564 CTCCATGGAGCCCTTTACTTTG 58.980 50.000 28.45 1.40 35.31 2.77
193 194 3.372440 CTCCATGGAGCCCTTTACTTT 57.628 47.619 28.45 0.00 35.31 2.66
204 205 1.739049 GAGACCGAGCTCCATGGAG 59.261 63.158 33.73 33.73 44.56 3.86
205 206 3.941081 GAGACCGAGCTCCATGGA 58.059 61.111 15.27 15.27 0.00 3.41
211 212 0.729690 GCATTTTGGAGACCGAGCTC 59.270 55.000 2.73 2.73 0.00 4.09
212 213 0.678048 GGCATTTTGGAGACCGAGCT 60.678 55.000 0.00 0.00 0.00 4.09
213 214 1.657751 GGGCATTTTGGAGACCGAGC 61.658 60.000 0.00 0.00 0.00 5.03
214 215 0.035056 AGGGCATTTTGGAGACCGAG 60.035 55.000 0.00 0.00 0.00 4.63
215 216 1.065709 GTAGGGCATTTTGGAGACCGA 60.066 52.381 0.00 0.00 0.00 4.69
216 217 1.065418 AGTAGGGCATTTTGGAGACCG 60.065 52.381 0.00 0.00 0.00 4.79
217 218 2.644676 GAGTAGGGCATTTTGGAGACC 58.355 52.381 0.00 0.00 0.00 3.85
218 219 2.644676 GGAGTAGGGCATTTTGGAGAC 58.355 52.381 0.00 0.00 0.00 3.36
219 220 1.564348 GGGAGTAGGGCATTTTGGAGA 59.436 52.381 0.00 0.00 0.00 3.71
220 221 1.284785 TGGGAGTAGGGCATTTTGGAG 59.715 52.381 0.00 0.00 0.00 3.86
221 222 1.005450 GTGGGAGTAGGGCATTTTGGA 59.995 52.381 0.00 0.00 0.00 3.53
222 223 1.272425 TGTGGGAGTAGGGCATTTTGG 60.272 52.381 0.00 0.00 0.00 3.28
223 224 1.818674 GTGTGGGAGTAGGGCATTTTG 59.181 52.381 0.00 0.00 0.00 2.44
224 225 1.427368 TGTGTGGGAGTAGGGCATTTT 59.573 47.619 0.00 0.00 0.00 1.82
225 226 1.072266 TGTGTGGGAGTAGGGCATTT 58.928 50.000 0.00 0.00 0.00 2.32
226 227 1.004745 CTTGTGTGGGAGTAGGGCATT 59.995 52.381 0.00 0.00 0.00 3.56
227 228 0.620556 CTTGTGTGGGAGTAGGGCAT 59.379 55.000 0.00 0.00 0.00 4.40
228 229 2.066340 CTTGTGTGGGAGTAGGGCA 58.934 57.895 0.00 0.00 0.00 5.36
229 230 1.377333 GCTTGTGTGGGAGTAGGGC 60.377 63.158 0.00 0.00 0.00 5.19
230 231 1.079127 CGCTTGTGTGGGAGTAGGG 60.079 63.158 0.00 0.00 0.00 3.53
231 232 0.320374 TTCGCTTGTGTGGGAGTAGG 59.680 55.000 0.00 0.00 0.00 3.18
232 233 2.163818 TTTCGCTTGTGTGGGAGTAG 57.836 50.000 0.00 0.00 0.00 2.57
233 234 2.623878 TTTTCGCTTGTGTGGGAGTA 57.376 45.000 0.00 0.00 0.00 2.59
234 235 1.608590 CATTTTCGCTTGTGTGGGAGT 59.391 47.619 0.00 0.00 0.00 3.85
235 236 1.666888 GCATTTTCGCTTGTGTGGGAG 60.667 52.381 0.00 0.00 0.00 4.30
236 237 0.313672 GCATTTTCGCTTGTGTGGGA 59.686 50.000 0.00 0.00 0.00 4.37
237 238 0.314935 AGCATTTTCGCTTGTGTGGG 59.685 50.000 0.00 0.00 39.99 4.61
238 239 2.226437 AGTAGCATTTTCGCTTGTGTGG 59.774 45.455 0.00 0.00 43.56 4.17
239 240 3.542712 AGTAGCATTTTCGCTTGTGTG 57.457 42.857 0.00 0.00 43.56 3.82
240 241 5.283060 CTAAGTAGCATTTTCGCTTGTGT 57.717 39.130 0.00 0.00 43.56 3.72
255 256 5.428253 TGAAATTACTGCCTGGCTAAGTAG 58.572 41.667 21.03 10.80 0.00 2.57
256 257 5.429681 TGAAATTACTGCCTGGCTAAGTA 57.570 39.130 21.03 16.62 0.00 2.24
257 258 4.301072 TGAAATTACTGCCTGGCTAAGT 57.699 40.909 21.03 17.67 0.00 2.24
258 259 5.126061 ACATTGAAATTACTGCCTGGCTAAG 59.874 40.000 21.03 12.36 0.00 2.18
259 260 5.016173 ACATTGAAATTACTGCCTGGCTAA 58.984 37.500 21.03 11.40 0.00 3.09
260 261 4.599041 ACATTGAAATTACTGCCTGGCTA 58.401 39.130 21.03 1.37 0.00 3.93
261 262 3.434309 ACATTGAAATTACTGCCTGGCT 58.566 40.909 21.03 2.51 0.00 4.75
262 263 3.874392 ACATTGAAATTACTGCCTGGC 57.126 42.857 12.87 12.87 0.00 4.85
263 264 5.679638 GCCTAACATTGAAATTACTGCCTGG 60.680 44.000 0.00 0.00 0.00 4.45
264 265 5.126061 AGCCTAACATTGAAATTACTGCCTG 59.874 40.000 0.00 0.00 0.00 4.85
265 266 5.264395 AGCCTAACATTGAAATTACTGCCT 58.736 37.500 0.00 0.00 0.00 4.75
266 267 5.582689 AGCCTAACATTGAAATTACTGCC 57.417 39.130 0.00 0.00 0.00 4.85
267 268 6.620678 TCAAGCCTAACATTGAAATTACTGC 58.379 36.000 0.00 0.00 32.66 4.40
268 269 8.044060 TCTCAAGCCTAACATTGAAATTACTG 57.956 34.615 0.00 0.00 35.14 2.74
269 270 8.635765 TTCTCAAGCCTAACATTGAAATTACT 57.364 30.769 0.00 0.00 35.14 2.24
270 271 9.860898 ATTTCTCAAGCCTAACATTGAAATTAC 57.139 29.630 0.00 0.00 35.14 1.89
272 273 8.810041 AGATTTCTCAAGCCTAACATTGAAATT 58.190 29.630 0.00 0.00 35.14 1.82
273 274 8.358582 AGATTTCTCAAGCCTAACATTGAAAT 57.641 30.769 0.00 0.00 35.14 2.17
274 275 7.765695 AGATTTCTCAAGCCTAACATTGAAA 57.234 32.000 0.00 0.00 35.14 2.69
275 276 8.730680 GTTAGATTTCTCAAGCCTAACATTGAA 58.269 33.333 0.00 0.00 39.09 2.69
276 277 7.064609 CGTTAGATTTCTCAAGCCTAACATTGA 59.935 37.037 0.00 0.00 39.17 2.57
277 278 7.148407 ACGTTAGATTTCTCAAGCCTAACATTG 60.148 37.037 0.00 0.00 39.17 2.82
278 279 6.879458 ACGTTAGATTTCTCAAGCCTAACATT 59.121 34.615 0.00 0.00 39.17 2.71
279 280 6.407202 ACGTTAGATTTCTCAAGCCTAACAT 58.593 36.000 0.00 0.00 39.17 2.71
280 281 5.790593 ACGTTAGATTTCTCAAGCCTAACA 58.209 37.500 0.00 0.00 39.17 2.41
281 282 6.590677 AGAACGTTAGATTTCTCAAGCCTAAC 59.409 38.462 0.00 0.00 37.12 2.34
282 283 6.698380 AGAACGTTAGATTTCTCAAGCCTAA 58.302 36.000 0.00 0.00 0.00 2.69
283 284 6.282199 AGAACGTTAGATTTCTCAAGCCTA 57.718 37.500 0.00 0.00 0.00 3.93
284 285 5.153950 AGAACGTTAGATTTCTCAAGCCT 57.846 39.130 0.00 0.00 0.00 4.58
285 286 5.864628 AAGAACGTTAGATTTCTCAAGCC 57.135 39.130 0.00 0.00 30.55 4.35
286 287 7.352739 TCAAAAGAACGTTAGATTTCTCAAGC 58.647 34.615 0.00 0.00 30.55 4.01
287 288 8.012241 CCTCAAAAGAACGTTAGATTTCTCAAG 58.988 37.037 0.00 0.44 30.55 3.02
288 289 7.713507 TCCTCAAAAGAACGTTAGATTTCTCAA 59.286 33.333 0.00 0.00 30.55 3.02
289 290 7.214381 TCCTCAAAAGAACGTTAGATTTCTCA 58.786 34.615 0.00 0.00 30.55 3.27
290 291 7.653767 TCCTCAAAAGAACGTTAGATTTCTC 57.346 36.000 0.00 0.00 30.55 2.87
291 292 7.308049 GCTTCCTCAAAAGAACGTTAGATTTCT 60.308 37.037 0.00 0.00 33.32 2.52
292 293 6.797513 GCTTCCTCAAAAGAACGTTAGATTTC 59.202 38.462 0.00 0.00 0.00 2.17
293 294 6.262273 TGCTTCCTCAAAAGAACGTTAGATTT 59.738 34.615 0.00 0.00 0.00 2.17
294 295 5.763204 TGCTTCCTCAAAAGAACGTTAGATT 59.237 36.000 0.00 0.00 0.00 2.40
295 296 5.305585 TGCTTCCTCAAAAGAACGTTAGAT 58.694 37.500 0.00 0.00 0.00 1.98
296 297 4.699637 TGCTTCCTCAAAAGAACGTTAGA 58.300 39.130 0.00 0.00 0.00 2.10
297 298 5.418310 TTGCTTCCTCAAAAGAACGTTAG 57.582 39.130 0.00 0.00 0.00 2.34
298 299 5.449451 GGTTTGCTTCCTCAAAAGAACGTTA 60.449 40.000 0.00 0.00 37.65 3.18
299 300 4.421058 GTTTGCTTCCTCAAAAGAACGTT 58.579 39.130 0.00 0.00 37.65 3.99
300 301 3.181490 GGTTTGCTTCCTCAAAAGAACGT 60.181 43.478 0.00 0.00 37.65 3.99
301 302 3.181491 TGGTTTGCTTCCTCAAAAGAACG 60.181 43.478 0.00 0.00 37.65 3.95
302 303 4.385358 TGGTTTGCTTCCTCAAAAGAAC 57.615 40.909 0.00 0.00 37.65 3.01
303 304 5.175127 GTTTGGTTTGCTTCCTCAAAAGAA 58.825 37.500 0.00 0.00 37.65 2.52
304 305 4.221703 TGTTTGGTTTGCTTCCTCAAAAGA 59.778 37.500 0.00 0.00 37.65 2.52
305 306 4.502962 TGTTTGGTTTGCTTCCTCAAAAG 58.497 39.130 0.00 0.00 37.65 2.27
318 319 0.475044 TCGTAGGGCCTGTTTGGTTT 59.525 50.000 18.53 0.00 38.35 3.27
374 383 3.003173 ACAGAGGCCGGCTAAGCA 61.003 61.111 28.56 0.00 0.00 3.91
405 414 2.078849 TACAGCAGTGACATCCGTTG 57.921 50.000 0.00 0.00 0.00 4.10
493 505 5.814481 TGATGTGAACCATTTGGACTATGA 58.186 37.500 3.01 0.00 38.94 2.15
540 555 3.255149 CCACTGAAAGAAGCAAGCTCATT 59.745 43.478 0.00 0.00 37.43 2.57
655 671 6.425417 GTCAGCTAAGTGGCCTAAGATTATTC 59.575 42.308 3.32 0.00 0.00 1.75
662 678 1.204941 ACGTCAGCTAAGTGGCCTAAG 59.795 52.381 3.32 0.00 0.00 2.18
869 885 0.110192 GCTTACGCTTGTGCACCTTC 60.110 55.000 15.69 1.68 39.64 3.46
870 886 1.841663 CGCTTACGCTTGTGCACCTT 61.842 55.000 15.69 0.00 39.64 3.50
871 887 2.317609 CGCTTACGCTTGTGCACCT 61.318 57.895 15.69 0.00 39.64 4.00
872 888 2.173382 CGCTTACGCTTGTGCACC 59.827 61.111 15.69 0.00 39.64 5.01
873 889 1.438710 CACGCTTACGCTTGTGCAC 60.439 57.895 10.75 10.75 45.53 4.57
874 890 1.885388 ACACGCTTACGCTTGTGCA 60.885 52.632 2.37 0.00 45.55 4.57
875 891 2.935955 ACACGCTTACGCTTGTGC 59.064 55.556 2.37 0.00 45.55 4.57
878 894 0.111266 GTCACACACGCTTACGCTTG 60.111 55.000 0.00 0.00 45.53 4.01
879 895 1.545614 CGTCACACACGCTTACGCTT 61.546 55.000 0.00 0.00 42.87 4.68
880 896 2.014554 CGTCACACACGCTTACGCT 61.015 57.895 0.00 0.00 42.87 5.07
938 957 2.288457 CGACTCGCCTCATTGGATATGT 60.288 50.000 0.00 0.00 38.35 2.29
953 972 2.579787 GGTGATGGCGACGACTCG 60.580 66.667 0.65 0.00 43.28 4.18
955 974 4.129737 CGGGTGATGGCGACGACT 62.130 66.667 0.65 0.00 0.00 4.18
1321 1362 4.451150 GCGCGGTGGATGTCAGGA 62.451 66.667 8.83 0.00 0.00 3.86
1594 1673 1.724148 TTGCCCCCATGAGTTGACCA 61.724 55.000 0.00 0.00 0.00 4.02
1815 1912 2.056906 AATGCGATGGTAGCCCCTCC 62.057 60.000 0.00 0.00 0.00 4.30
1918 2024 2.446435 GGATTGGACTTGGCAAGCTTA 58.554 47.619 26.45 10.23 0.00 3.09
1930 2036 0.394899 CTTGCTCCTGGGGATTGGAC 60.395 60.000 0.00 0.00 0.00 4.02
1936 2042 3.650950 GTGCCTTGCTCCTGGGGA 61.651 66.667 0.00 0.00 0.00 4.81
2137 2267 2.748058 GAAGCTTGTCGCCCTTGGGA 62.748 60.000 2.10 0.00 40.39 4.37
2155 2285 3.636300 CCAACTTGTCAAAATCACCCTGA 59.364 43.478 0.00 0.00 0.00 3.86
2171 2301 4.916183 AGTAGTACGTCTAGGTCCAACTT 58.084 43.478 0.00 0.00 0.00 2.66
2233 2375 2.238521 TGCATGTCTTTGTTCTTCCCC 58.761 47.619 0.00 0.00 0.00 4.81
2264 2407 0.250727 ATGTTGTCCTTGTCCCACGG 60.251 55.000 0.00 0.00 0.00 4.94
2276 2419 3.681897 AGCTTCTTGACGATGATGTTGTC 59.318 43.478 0.00 0.00 40.99 3.18
2299 2451 4.590647 TCCTCTACTTCCATATGCTCCTTG 59.409 45.833 0.00 0.00 0.00 3.61
2316 2468 7.316393 TCAATCTTCTTGTCCTTTTCCTCTA 57.684 36.000 0.00 0.00 0.00 2.43
2345 2503 3.434739 CCCATATTCTTGGCAGCTTCTCT 60.435 47.826 0.00 0.00 35.29 3.10
2346 2504 2.883386 CCCATATTCTTGGCAGCTTCTC 59.117 50.000 0.00 0.00 35.29 2.87
2360 2518 2.605825 TCTCCTTCCACCCCCATATT 57.394 50.000 0.00 0.00 0.00 1.28
2427 2858 1.145738 CCCCCTCCTCCATATGTTTGG 59.854 57.143 1.24 1.06 38.18 3.28
2459 3378 2.327325 TCCTCCTCCCTATGTATGGC 57.673 55.000 0.00 0.00 0.00 4.40
2489 3420 6.848562 ATGTATGGTTATTTCTCCTTCCCT 57.151 37.500 0.00 0.00 0.00 4.20
2502 3457 4.831155 CCTCTTCGTCCCTATGTATGGTTA 59.169 45.833 0.00 0.00 0.00 2.85
2504 3459 3.117246 TCCTCTTCGTCCCTATGTATGGT 60.117 47.826 0.00 0.00 0.00 3.55
2507 3462 5.063017 TCTTCCTCTTCGTCCCTATGTAT 57.937 43.478 0.00 0.00 0.00 2.29
2508 3463 4.515028 TCTTCCTCTTCGTCCCTATGTA 57.485 45.455 0.00 0.00 0.00 2.29
2509 3464 3.383698 TCTTCCTCTTCGTCCCTATGT 57.616 47.619 0.00 0.00 0.00 2.29
2510 3465 3.068873 CCTTCTTCCTCTTCGTCCCTATG 59.931 52.174 0.00 0.00 0.00 2.23
2511 3466 3.301274 CCTTCTTCCTCTTCGTCCCTAT 58.699 50.000 0.00 0.00 0.00 2.57
2512 3467 2.623502 CCCTTCTTCCTCTTCGTCCCTA 60.624 54.545 0.00 0.00 0.00 3.53
2513 3468 1.562783 CCTTCTTCCTCTTCGTCCCT 58.437 55.000 0.00 0.00 0.00 4.20
2514 3469 0.537653 CCCTTCTTCCTCTTCGTCCC 59.462 60.000 0.00 0.00 0.00 4.46
2515 3470 0.537653 CCCCTTCTTCCTCTTCGTCC 59.462 60.000 0.00 0.00 0.00 4.79
2517 3472 1.554583 GCCCCCTTCTTCCTCTTCGT 61.555 60.000 0.00 0.00 0.00 3.85
2518 3473 1.222113 GCCCCCTTCTTCCTCTTCG 59.778 63.158 0.00 0.00 0.00 3.79
2520 3475 2.301738 CCGCCCCCTTCTTCCTCTT 61.302 63.158 0.00 0.00 0.00 2.85
2522 3477 3.798511 CCCGCCCCCTTCTTCCTC 61.799 72.222 0.00 0.00 0.00 3.71
2523 3478 4.348495 TCCCGCCCCCTTCTTCCT 62.348 66.667 0.00 0.00 0.00 3.36
2533 3488 1.838073 TTGTTTCTCCTCTCCCGCCC 61.838 60.000 0.00 0.00 0.00 6.13
2536 3491 0.389948 CGGTTGTTTCTCCTCTCCCG 60.390 60.000 0.00 0.00 0.00 5.14
2539 3494 0.673956 GCCCGGTTGTTTCTCCTCTC 60.674 60.000 0.00 0.00 0.00 3.20
2540 3495 1.375326 GCCCGGTTGTTTCTCCTCT 59.625 57.895 0.00 0.00 0.00 3.69
2556 3511 1.072965 CTTCTCCCACCTCCATATGCC 59.927 57.143 0.00 0.00 0.00 4.40
2568 3804 1.201429 GGCCACTTCTCCTTCTCCCA 61.201 60.000 0.00 0.00 0.00 4.37
2593 3829 1.618345 CCCTCGATATCCTCCTCCCTG 60.618 61.905 0.00 0.00 0.00 4.45
2652 4038 4.225267 CCCTGTGTATGGTTACTTCTCCTT 59.775 45.833 0.00 0.00 0.00 3.36
2657 4043 3.773119 TCCTCCCTGTGTATGGTTACTTC 59.227 47.826 0.00 0.00 0.00 3.01
2667 4053 0.631753 CTCCTCCTCCTCCCTGTGTA 59.368 60.000 0.00 0.00 0.00 2.90
2669 4055 1.382420 CCTCCTCCTCCTCCCTGTG 60.382 68.421 0.00 0.00 0.00 3.66
2671 4057 1.232792 CTCCTCCTCCTCCTCCCTG 59.767 68.421 0.00 0.00 0.00 4.45
2673 4059 2.015726 TCCTCCTCCTCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
2734 4171 6.620877 TCATCATCATCCTCATCATCATCA 57.379 37.500 0.00 0.00 0.00 3.07
2735 4172 9.785982 ATTATCATCATCATCCTCATCATCATC 57.214 33.333 0.00 0.00 0.00 2.92
2736 4173 9.566432 CATTATCATCATCATCCTCATCATCAT 57.434 33.333 0.00 0.00 0.00 2.45
2737 4174 8.768397 TCATTATCATCATCATCCTCATCATCA 58.232 33.333 0.00 0.00 0.00 3.07
2738 4175 9.785982 ATCATTATCATCATCATCCTCATCATC 57.214 33.333 0.00 0.00 0.00 2.92
2739 4176 9.566432 CATCATTATCATCATCATCCTCATCAT 57.434 33.333 0.00 0.00 0.00 2.45
2740 4177 8.768397 TCATCATTATCATCATCATCCTCATCA 58.232 33.333 0.00 0.00 0.00 3.07
2741 4178 9.785982 ATCATCATTATCATCATCATCCTCATC 57.214 33.333 0.00 0.00 0.00 2.92
2742 4179 9.566432 CATCATCATTATCATCATCATCCTCAT 57.434 33.333 0.00 0.00 0.00 2.90
2743 4180 8.768397 TCATCATCATTATCATCATCATCCTCA 58.232 33.333 0.00 0.00 0.00 3.86
2744 4181 9.614792 TTCATCATCATTATCATCATCATCCTC 57.385 33.333 0.00 0.00 0.00 3.71
2745 4182 9.620259 CTTCATCATCATTATCATCATCATCCT 57.380 33.333 0.00 0.00 0.00 3.24
2746 4183 9.614792 TCTTCATCATCATTATCATCATCATCC 57.385 33.333 0.00 0.00 0.00 3.51
2754 4191 9.727859 CCTCTTCTTCTTCATCATCATTATCAT 57.272 33.333 0.00 0.00 0.00 2.45
2755 4192 8.931568 TCCTCTTCTTCTTCATCATCATTATCA 58.068 33.333 0.00 0.00 0.00 2.15
2756 4193 9.426837 CTCCTCTTCTTCTTCATCATCATTATC 57.573 37.037 0.00 0.00 0.00 1.75
2757 4194 8.377034 CCTCCTCTTCTTCTTCATCATCATTAT 58.623 37.037 0.00 0.00 0.00 1.28
2758 4195 7.566509 TCCTCCTCTTCTTCTTCATCATCATTA 59.433 37.037 0.00 0.00 0.00 1.90
2759 4196 6.386342 TCCTCCTCTTCTTCTTCATCATCATT 59.614 38.462 0.00 0.00 0.00 2.57
2760 4197 5.904169 TCCTCCTCTTCTTCTTCATCATCAT 59.096 40.000 0.00 0.00 0.00 2.45
2761 4198 5.275630 TCCTCCTCTTCTTCTTCATCATCA 58.724 41.667 0.00 0.00 0.00 3.07
2762 4199 5.221501 CCTCCTCCTCTTCTTCTTCATCATC 60.222 48.000 0.00 0.00 0.00 2.92
2763 4200 4.655186 CCTCCTCCTCTTCTTCTTCATCAT 59.345 45.833 0.00 0.00 0.00 2.45
2764 4201 4.029520 CCTCCTCCTCTTCTTCTTCATCA 58.970 47.826 0.00 0.00 0.00 3.07
2765 4202 4.285863 TCCTCCTCCTCTTCTTCTTCATC 58.714 47.826 0.00 0.00 0.00 2.92
2766 4203 4.289245 CTCCTCCTCCTCTTCTTCTTCAT 58.711 47.826 0.00 0.00 0.00 2.57
2767 4204 3.565449 CCTCCTCCTCCTCTTCTTCTTCA 60.565 52.174 0.00 0.00 0.00 3.02
2768 4205 3.031013 CCTCCTCCTCCTCTTCTTCTTC 58.969 54.545 0.00 0.00 0.00 2.87
2769 4206 2.657459 TCCTCCTCCTCCTCTTCTTCTT 59.343 50.000 0.00 0.00 0.00 2.52
2770 4207 2.244769 CTCCTCCTCCTCCTCTTCTTCT 59.755 54.545 0.00 0.00 0.00 2.85
2771 4208 2.243736 TCTCCTCCTCCTCCTCTTCTTC 59.756 54.545 0.00 0.00 0.00 2.87
2772 4209 2.293246 TCTCCTCCTCCTCCTCTTCTT 58.707 52.381 0.00 0.00 0.00 2.52
2773 4210 1.994399 TCTCCTCCTCCTCCTCTTCT 58.006 55.000 0.00 0.00 0.00 2.85
2774 4211 2.176798 TCATCTCCTCCTCCTCCTCTTC 59.823 54.545 0.00 0.00 0.00 2.87
2775 4212 2.177669 CTCATCTCCTCCTCCTCCTCTT 59.822 54.545 0.00 0.00 0.00 2.85
2776 4213 1.782752 CTCATCTCCTCCTCCTCCTCT 59.217 57.143 0.00 0.00 0.00 3.69
2777 4214 1.203050 CCTCATCTCCTCCTCCTCCTC 60.203 61.905 0.00 0.00 0.00 3.71
2778 4215 0.859760 CCTCATCTCCTCCTCCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
2779 4216 0.856982 TCCTCATCTCCTCCTCCTCC 59.143 60.000 0.00 0.00 0.00 4.30
2780 4217 1.203050 CCTCCTCATCTCCTCCTCCTC 60.203 61.905 0.00 0.00 0.00 3.71
2781 4218 0.859760 CCTCCTCATCTCCTCCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
2782 4219 0.856982 TCCTCCTCATCTCCTCCTCC 59.143 60.000 0.00 0.00 0.00 4.30
2783 4220 2.109834 TCATCCTCCTCATCTCCTCCTC 59.890 54.545 0.00 0.00 0.00 3.71
2784 4221 2.110543 CTCATCCTCCTCATCTCCTCCT 59.889 54.545 0.00 0.00 0.00 3.69
2785 4222 2.528564 CTCATCCTCCTCATCTCCTCC 58.471 57.143 0.00 0.00 0.00 4.30
2786 4223 2.109834 TCCTCATCCTCCTCATCTCCTC 59.890 54.545 0.00 0.00 0.00 3.71
2787 4224 2.110543 CTCCTCATCCTCCTCATCTCCT 59.889 54.545 0.00 0.00 0.00 3.69
2788 4225 2.528564 CTCCTCATCCTCCTCATCTCC 58.471 57.143 0.00 0.00 0.00 3.71
2789 4226 2.109834 TCCTCCTCATCCTCCTCATCTC 59.890 54.545 0.00 0.00 0.00 2.75
2790 4227 2.110543 CTCCTCCTCATCCTCCTCATCT 59.889 54.545 0.00 0.00 0.00 2.90
2791 4228 2.528564 CTCCTCCTCATCCTCCTCATC 58.471 57.143 0.00 0.00 0.00 2.92
2792 4229 1.149711 CCTCCTCCTCATCCTCCTCAT 59.850 57.143 0.00 0.00 0.00 2.90
2793 4230 0.560193 CCTCCTCCTCATCCTCCTCA 59.440 60.000 0.00 0.00 0.00 3.86
2794 4231 0.856982 TCCTCCTCCTCATCCTCCTC 59.143 60.000 0.00 0.00 0.00 3.71
2795 4232 0.859760 CTCCTCCTCCTCATCCTCCT 59.140 60.000 0.00 0.00 0.00 3.69
2796 4233 0.178935 CCTCCTCCTCCTCATCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
2797 4234 0.856982 TCCTCCTCCTCCTCATCCTC 59.143 60.000 0.00 0.00 0.00 3.71
2798 4235 0.859760 CTCCTCCTCCTCCTCATCCT 59.140 60.000 0.00 0.00 0.00 3.24
2799 4236 0.178935 CCTCCTCCTCCTCCTCATCC 60.179 65.000 0.00 0.00 0.00 3.51
2800 4237 0.856982 TCCTCCTCCTCCTCCTCATC 59.143 60.000 0.00 0.00 0.00 2.92
2801 4238 0.859760 CTCCTCCTCCTCCTCCTCAT 59.140 60.000 0.00 0.00 0.00 2.90
2802 4239 1.292941 CCTCCTCCTCCTCCTCCTCA 61.293 65.000 0.00 0.00 0.00 3.86
2803 4240 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
2804 4241 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
2807 4244 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
2810 4247 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
2827 4264 1.146358 GCTGAATCCGTGGCGTACTC 61.146 60.000 0.00 0.00 0.00 2.59
3123 4696 3.351416 GGTCCACGAAACCGGCAC 61.351 66.667 0.00 0.00 0.00 5.01
3244 4826 3.252284 AGGGGGCACTCACACCTG 61.252 66.667 0.00 0.00 0.00 4.00
3246 4828 2.640581 AAACAGGGGGCACTCACACC 62.641 60.000 0.00 0.00 0.00 4.16
3253 4835 3.375647 TTTAGGATAAACAGGGGGCAC 57.624 47.619 0.00 0.00 0.00 5.01
3271 4853 5.014858 ACATCCATCAGCTCATCAACTTTT 58.985 37.500 0.00 0.00 0.00 2.27
3409 4991 5.455872 AGAGAATAGTCTATTGGTTCCCGA 58.544 41.667 9.90 0.00 32.80 5.14
3418 5006 4.657969 AGGCCAGCAAGAGAATAGTCTATT 59.342 41.667 5.01 4.71 35.67 1.73
3466 5054 6.162777 GTCTTCATTCTTCTGCTGACTAGTT 58.837 40.000 0.00 0.00 0.00 2.24
3598 5186 2.143122 TGCAGCTTTTGTAACTCCTCG 58.857 47.619 0.00 0.00 0.00 4.63
3721 5312 5.511716 CGGAGAGAAGATAGCTAGGTACAGA 60.512 48.000 3.24 0.00 0.00 3.41
3773 5364 3.483235 CTGCAACCCACCGTGCAAC 62.483 63.158 0.00 0.00 36.81 4.17
3878 5470 4.067896 GTGGTACCAATATCTGCAGGATG 58.932 47.826 18.31 7.83 40.87 3.51
3886 5478 6.327386 ACATTTCCTGTGGTACCAATATCT 57.673 37.500 18.31 0.00 36.48 1.98
4075 5667 6.756074 GTGACACTTGAGATGATTTAGAGAGG 59.244 42.308 0.00 0.00 0.00 3.69
4099 5691 2.465813 AGATCTAGCACCTTGAGCAGT 58.534 47.619 0.00 0.00 0.00 4.40
4141 5736 1.447314 GTACCGCTGGTTCTTCCCG 60.447 63.158 5.57 0.00 37.09 5.14
4287 5882 3.504863 GCTGTTGCATGTTGAGGTATTG 58.495 45.455 0.00 0.00 39.41 1.90
4288 5883 2.162208 CGCTGTTGCATGTTGAGGTATT 59.838 45.455 0.00 0.00 39.64 1.89
4343 5938 4.097551 TGTTTGGATCAATGTGACCAGA 57.902 40.909 0.00 0.00 32.22 3.86
4362 5963 6.540438 TCCGACTACTAGATCCAAAATTGT 57.460 37.500 0.00 0.00 0.00 2.71
4413 6014 4.202357 TGACATTGGATAGTACCTCCATGC 60.202 45.833 13.90 10.84 42.26 4.06
4624 6249 2.239654 GGGATGGTTCTTGACATCTGGA 59.760 50.000 0.00 0.00 42.34 3.86
4654 6294 2.690497 TCCCTTGATGCTTAGAGACTCG 59.310 50.000 0.00 0.00 0.00 4.18
4684 6324 2.514458 ATGGAAGAAGACGCCCATTT 57.486 45.000 0.00 0.00 36.05 2.32
4712 6352 6.508777 TGGCAAGTTTGTTGTTATTACCTTC 58.491 36.000 0.00 0.00 0.00 3.46
4813 6453 3.278574 GCATACAATGTGTTGGAGCCTA 58.721 45.455 0.00 0.00 39.70 3.93
5006 13799 6.057533 TCAACTCAAGCTCTTTCAATTCAGA 58.942 36.000 0.00 0.00 0.00 3.27
5009 13802 6.498304 TGTTCAACTCAAGCTCTTTCAATTC 58.502 36.000 0.00 0.00 0.00 2.17
5286 14089 1.305381 AGCCTAGAAGCAGACCCGT 60.305 57.895 0.00 0.00 34.23 5.28
5338 14141 0.442699 GAAGTTTGTCGATGCCGGAC 59.557 55.000 5.05 0.00 36.24 4.79
5413 14240 6.238593 GCTTGTTTTTATGGTTTTCAATGGCA 60.239 34.615 0.00 0.00 0.00 4.92
5507 14388 3.442977 AGAAAGAGAATGTTGCAGCATCC 59.557 43.478 16.91 3.67 0.00 3.51
5644 14533 1.871039 ACGCAGAACTTAAACACGCAT 59.129 42.857 0.00 0.00 0.00 4.73
5681 14570 3.645884 TGTAGAGCAAGTAAACGGACAC 58.354 45.455 0.00 0.00 0.00 3.67
5777 14666 9.283420 CACAAATGCATACGATGTTTTATACAA 57.717 29.630 0.00 0.00 40.89 2.41
5783 14672 6.673106 TGTACACAAATGCATACGATGTTTT 58.327 32.000 0.00 0.00 0.00 2.43
5884 14773 2.250031 TGCAGAACCCAATCAAAGCAT 58.750 42.857 0.00 0.00 0.00 3.79
5885 14774 1.702182 TGCAGAACCCAATCAAAGCA 58.298 45.000 0.00 0.00 0.00 3.91
5886 14775 2.036346 AGTTGCAGAACCCAATCAAAGC 59.964 45.455 0.00 0.00 31.81 3.51
5887 14776 3.318839 TGAGTTGCAGAACCCAATCAAAG 59.681 43.478 0.00 0.00 31.81 2.77
5899 14788 3.817084 CCAGTTCATCTTTGAGTTGCAGA 59.183 43.478 0.00 0.00 32.27 4.26
5901 14790 3.819368 TCCAGTTCATCTTTGAGTTGCA 58.181 40.909 0.00 0.00 32.27 4.08
5934 15495 3.609103 GCAAACGGATGCCTACATTAG 57.391 47.619 3.53 0.00 40.49 1.73
6091 16409 5.346011 GCTGAAAACAATTTCGATTCTTCCC 59.654 40.000 0.00 0.00 46.47 3.97
6150 16494 1.542915 CACCAGCAAACAATGGGAGAG 59.457 52.381 0.00 0.00 41.13 3.20
6256 16620 6.149633 GTCTTATGCTTCGATTTGGTTTGTT 58.850 36.000 0.00 0.00 0.00 2.83
6258 16622 5.095490 GGTCTTATGCTTCGATTTGGTTTG 58.905 41.667 0.00 0.00 0.00 2.93
6276 16640 3.102972 TGCTTCTATCTCTGCAGGTCTT 58.897 45.455 15.13 0.00 0.00 3.01
6322 16686 2.362120 ACGAGGTACCCTGTCCGG 60.362 66.667 8.74 0.00 31.76 5.14
6324 16688 1.602327 GGTGACGAGGTACCCTGTCC 61.602 65.000 24.01 17.18 33.74 4.02
6354 16724 0.248289 TCGAGGTTTTGATCCGGGTC 59.752 55.000 8.12 8.12 0.00 4.46
6355 16725 0.036671 GTCGAGGTTTTGATCCGGGT 60.037 55.000 0.00 0.00 0.00 5.28
6357 16727 1.359848 CTGTCGAGGTTTTGATCCGG 58.640 55.000 0.00 0.00 0.00 5.14
6371 16741 2.093306 TAGTTCCACATTGGCTGTCG 57.907 50.000 0.00 0.00 37.47 4.35
6373 16743 3.561143 TGTTTAGTTCCACATTGGCTGT 58.439 40.909 0.00 0.00 37.47 4.40
6374 16744 3.569701 ACTGTTTAGTTCCACATTGGCTG 59.430 43.478 0.00 0.00 37.47 4.85
6375 16745 3.569701 CACTGTTTAGTTCCACATTGGCT 59.430 43.478 0.00 0.00 34.12 4.75
6376 16746 3.568007 TCACTGTTTAGTTCCACATTGGC 59.432 43.478 0.00 0.00 34.12 4.52
6377 16747 5.063204 TCTCACTGTTTAGTTCCACATTGG 58.937 41.667 0.00 0.00 35.01 3.16
6378 16748 6.260936 ACTTCTCACTGTTTAGTTCCACATTG 59.739 38.462 0.00 0.00 34.07 2.82
6379 16749 6.260936 CACTTCTCACTGTTTAGTTCCACATT 59.739 38.462 0.00 0.00 34.07 2.71
6380 16750 5.760253 CACTTCTCACTGTTTAGTTCCACAT 59.240 40.000 0.00 0.00 34.07 3.21
6381 16751 5.116180 CACTTCTCACTGTTTAGTTCCACA 58.884 41.667 0.00 0.00 34.07 4.17
6480 16865 7.122204 TCTCCACCCATATACATCGTTATACAG 59.878 40.741 0.00 0.00 0.00 2.74
6635 17027 5.016051 TCTTGATGATTTTCCTCCTCGAG 57.984 43.478 5.13 5.13 0.00 4.04
6686 17078 1.202417 TCCGATCTGCCGATCTCAAAC 60.202 52.381 15.09 0.00 43.14 2.93
6696 17088 1.452108 CAACCCCTTCCGATCTGCC 60.452 63.158 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.